BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1283c Length=325 Score E Sequences producing significant alignments: (Bits) Value gi|15608423|ref|NP_215799.1| oligopeptide-transport integral mem... 639 0.0 gi|183984107|ref|YP_001852398.1| oligopeptide-transport integral... 572 2e-161 gi|118619200|ref|YP_907532.1| oligopeptide-transport integral me... 568 3e-160 gi|240173019|ref|ZP_04751677.1| oligopeptide-transport integral ... 565 3e-159 gi|342858071|ref|ZP_08714727.1| ABC transporter permease [Mycoba... 548 4e-154 gi|333989917|ref|YP_004522531.1| peptide ABC transporter transme... 546 2e-153 gi|15827557|ref|NP_301820.1| binding-protein dependent transport... 537 8e-151 gi|108800892|ref|YP_641089.1| binding-protein-dependent transpor... 533 1e-149 gi|126436518|ref|YP_001072209.1| binding-protein-dependent trans... 533 2e-149 gi|296170190|ref|ZP_06851784.1| oligopeptide ABC superfamily ATP... 522 3e-146 gi|254821264|ref|ZP_05226265.1| ABC transporter, permease protei... 517 8e-145 gi|120405383|ref|YP_955212.1| binding-protein-dependent transpor... 505 4e-141 gi|118465746|ref|YP_880675.1| ABC transporter permease [Mycobact... 499 2e-139 gi|41408586|ref|NP_961422.1| hypothetical protein MAP2488 [Mycob... 499 2e-139 gi|145222849|ref|YP_001133527.1| binding-protein-dependent trans... 499 3e-139 gi|118468691|ref|YP_889246.1| oligopeptide transporter permease ... 496 2e-138 gi|226364862|ref|YP_002782644.1| ABC transporter permease protei... 448 7e-124 gi|111022318|ref|YP_705290.1| peptide ABC transporter permease [... 442 3e-122 gi|54022133|ref|YP_116375.1| putative ABC transporter permease [... 411 7e-113 gi|317506570|ref|ZP_07964363.1| inner membrane transporter [Segn... 359 3e-97 gi|296393469|ref|YP_003658353.1| binding-protein-dependent trans... 347 1e-93 gi|302525741|ref|ZP_07278083.1| nickel ABC transporter, permease... 341 1e-91 gi|256394726|ref|YP_003116290.1| binding-protein-dependent trans... 340 1e-91 gi|29829589|ref|NP_824223.1| peptide ABC transporter permease [S... 339 4e-91 gi|271963486|ref|YP_003337682.1| binding-protein-dependent trans... 338 6e-91 gi|271968343|ref|YP_003342539.1| binding-protein-dependent trans... 331 1e-88 gi|297198903|ref|ZP_06916300.1| peptide ABC transporter permease... 330 2e-88 gi|295837651|ref|ZP_06824584.1| peptide ABC transporter, permeas... 318 1e-84 gi|318061431|ref|ZP_07980152.1| peptide ABC transporter permease... 316 3e-84 gi|302520635|ref|ZP_07272977.1| peptide ABC transporter permease... 316 3e-84 gi|297559512|ref|YP_003678486.1| binding-protein-dependent trans... 299 5e-79 gi|227494777|ref|ZP_03925093.1| peptide ABC superfamily ATP bind... 285 6e-75 gi|227497852|ref|ZP_03928037.1| oligopeptide ABC superfamily ATP... 284 2e-74 gi|311894070|dbj|BAJ26478.1| putative peptide ABC transporter pe... 282 6e-74 gi|343523766|ref|ZP_08760727.1| ABC transporter, permease protei... 281 7e-74 gi|269127485|ref|YP_003300855.1| binding-protein-dependent trans... 278 7e-73 gi|256397417|ref|YP_003118981.1| binding-protein-dependent trans... 275 5e-72 gi|260904902|ref|ZP_05913224.1| ABC-type dipeptide/oligopeptide/... 273 2e-71 gi|257068037|ref|YP_003154292.1| ABC-type dipeptide/oligopeptide... 273 2e-71 gi|326772213|ref|ZP_08231498.1| peptide ABC transporter, permeas... 271 1e-70 gi|314924164|gb|EFS87995.1| ABC transporter, permease protein [P... 271 1e-70 gi|282855188|ref|ZP_06264520.1| ABC transporter, permease protei... 271 1e-70 gi|325067462|ref|ZP_08126135.1| binding-protein-dependent transp... 270 2e-70 gi|340360823|ref|ZP_08683288.1| oligopeptide ABC superfamily ATP... 270 2e-70 gi|320531723|ref|ZP_08032659.1| ABC transporter, permease protei... 269 4e-70 gi|327326691|gb|EGE68477.1| peptide ABC transporter, permease pr... 269 4e-70 gi|333918765|ref|YP_004492346.1| oligopeptide ABC transporter pe... 266 3e-69 gi|297571991|ref|YP_003697765.1| binding-protein-dependent trans... 236 3e-60 gi|302530053|ref|ZP_07282395.1| nickel ABC transporter, permease... 234 2e-59 gi|256396879|ref|YP_003118443.1| binding-protein-dependent trans... 232 5e-59 >gi|15608423|ref|NP_215799.1| oligopeptide-transport integral membrane protein ABC transporter OppB [Mycobacterium tuberculosis H37Rv] gi|15840730|ref|NP_335767.1| peptide ABC transporter, permease protein [Mycobacterium tuberculosis CDC1551] gi|31792475|ref|NP_854968.1| oligopeptide-transport integral membrane protein ABC transporter OppB [Mycobacterium bovis AF2122/97] 82 more sequence titles Length=325 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/325 (100%), Positives = 325/325 (100%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR Sbjct 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG Sbjct 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG Sbjct 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK Sbjct 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS Sbjct 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GAVVLLAGLLSDVIYAALDPRVRVS Sbjct 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 >gi|183984107|ref|YP_001852398.1| oligopeptide-transport integral membrane protein ABC transporter OppB [Mycobacterium marinum M] gi|183177433|gb|ACC42543.1| oligopeptide-transport integral membrane protein ABC transporter OppB [Mycobacterium marinum M] Length=325 Score = 572 bits (1475), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 285/325 (88%), Positives = 303/325 (94%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNY+VLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKA +LGL++ Sbjct 1 MTRFLARRLLNYVVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAAELGLNK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA+WV+HAVRGDFG TI+GQPV ELGRRIG SLRLL++GSV GT GV IGAWG Sbjct 61 PIPVRYAHWVTHAVRGDFGVTISGQPVSAELGRRIGTSLRLLLIGSVVGTALGVAIGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYR SDRV+T LALLVLSTPTFVVANLLILGALRVNWA+G QLFDYTGETSPGV GG Sbjct 121 AIRQYRFSDRVITMLALLVLSTPTFVVANLLILGALRVNWALGFQLFDYTGETSPGVDGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W GDRL+HL+LPSLTLAL AAAG+SRYQRNAMLDVLGQDFIRTARAKGLTRRRAL+K Sbjct 181 TWAAFGDRLKHLVLPSLTLALGAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALIK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEW VRGI+TQDTNIVAAITVFS Sbjct 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWAVRGIATQDTNIVAAITVFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GAVVLLAGLLSD+ YAALDPRVRVS Sbjct 301 GAVVLLAGLLSDIFYAALDPRVRVS 325 >gi|118619200|ref|YP_907532.1| oligopeptide-transport integral membrane protein ABC transporter OppB [Mycobacterium ulcerans Agy99] gi|118571310|gb|ABL06061.1| oligopeptide-transport integral membrane protein ABC transporter OppB [Mycobacterium ulcerans Agy99] Length=325 Score = 568 bits (1465), Expect = 3e-160, Method: Compositional matrix adjust. Identities = 283/325 (88%), Positives = 301/325 (93%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNY+VLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKA +LGL++ Sbjct 1 MTRFLARRLLNYVVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAAELGLNK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA+WV+HAVRGDFG TI+GQPV ELGRRIG SLRLL++GSV G GV IGAWG Sbjct 61 PIPVRYAHWVTHAVRGDFGVTISGQPVSAELGRRIGTSLRLLLIGSVVGAALGVAIGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYR SDRV+T LALLVLSTPTFVVANLLILGALRVNWA+G QLFDYTGETSPGV GG Sbjct 121 AIRQYRFSDRVITMLALLVLSTPTFVVANLLILGALRVNWALGFQLFDYTGETSPGVDGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W GDRL+HL+LPSLTLAL AAAG+SRYQRNAMLDVLGQDFIRTARAKGLTRRRAL+K Sbjct 181 TWAAFGDRLKHLVLPSLTLALGAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALIK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEW VRGI+TQDTNIVAAITVFS Sbjct 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWAVRGIATQDTNIVAAITVFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GA VLLAGLLSD+ YAALDPRVRVS Sbjct 301 GAAVLLAGLLSDIFYAALDPRVRVS 325 >gi|240173019|ref|ZP_04751677.1| oligopeptide-transport integral membrane protein ABC transporter OppB [Mycobacterium kansasii ATCC 12478] Length=325 Score = 565 bits (1457), Expect = 3e-159, Method: Compositional matrix adjust. Identities = 293/325 (91%), Positives = 308/325 (95%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKA LGL+R Sbjct 1 MTRFLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAAQLGLNR 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYANWVSHAVRGDFG TITGQPVG ELGRRIG SLRLL++GSV GT+ GV IGAWG Sbjct 61 PIPIRYANWVSHAVRGDFGVTITGQPVGAELGRRIGTSLRLLIIGSVVGTILGVAIGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRV+T LALLVLSTPTFVVANLLILGALRVNWA+G+QLFDYTGET+PGVA G Sbjct 121 AIRQYRLSDRVITMLALLVLSTPTFVVANLLILGALRVNWALGLQLFDYTGETAPGVAAG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W+ DRL+HL+LPSLTLAL AAAG+SRYQRNAMLDVLGQDFIRTARAKGLTRRRAL+K Sbjct 181 TWEAFADRLKHLVLPSLTLALGAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALIK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS Sbjct 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GAVVLLAGLLSDVIYAALDPRVRV+ Sbjct 301 GAVVLLAGLLSDVIYAALDPRVRVA 325 >gi|342858071|ref|ZP_08714727.1| ABC transporter permease [Mycobacterium colombiense CECT 3035] gi|342135404|gb|EGT88570.1| ABC transporter permease [Mycobacterium colombiense CECT 3035] Length=325 Score = 548 bits (1413), Expect = 4e-154, Method: Compositional matrix adjust. Identities = 273/325 (84%), Positives = 303/325 (94%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNY+VLLALASFLT+CLTS+AF PL+SL+QRSPRPPQAVIDAKAH LGLD Sbjct 1 MTRFLARRLLNYVVLLALASFLTFCLTSVAFRPLDSLLQRSPRPPQAVIDAKAHTLGLDE 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA+W SHAVRGDFG TITGQPVGT L RR+GV+LRLL++GS+ GT+ G+ GAWG Sbjct 61 PIPIRYAHWASHAVRGDFGKTITGQPVGTTLWRRVGVTLRLLIIGSLAGTLLGIAAGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRV+T +ALLVLSTPTFV+A+LLILGALRVNWAVGI +FDYTGETSPGV GG Sbjct 121 AIRQYRLSDRVVTMVALLVLSTPTFVIASLLILGALRVNWAVGIHIFDYTGETSPGVTGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 +L DRL+HL+LPSLTLAL AAAG+SRYQRNAMLDVLGQDFIRTARAKGLTRRRAL+K Sbjct 181 AGAQLLDRLRHLVLPSLTLALGAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIP+ATLFAYGVAGLVTGAVFVEKIFGWHGMGEW+V+GI+TQDTNI+AAIT+FS Sbjct 241 HGLRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGIATQDTNIIAAITLFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GAVVLLAGLLSDV YAALDPRVRVS Sbjct 301 GAVVLLAGLLSDVFYAALDPRVRVS 325 >gi|333989917|ref|YP_004522531.1| peptide ABC transporter transmembrane protein [Mycobacterium sp. JDM601] gi|333485885|gb|AEF35277.1| oligopeptide-transport integral membrane protein ABC transporter OppB [Mycobacterium sp. JDM601] Length=325 Score = 546 bits (1406), Expect = 2e-153, Method: Compositional matrix adjust. Identities = 275/325 (85%), Positives = 297/325 (92%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M R+LA R LNYLVLL LASFLT+CLTSLAF+PL+SLMQR+PRPPQAVIDAKA +LGLD+ Sbjct 1 MMRFLAGRALNYLVLLGLASFLTFCLTSLAFAPLDSLMQRNPRPPQAVIDAKAAELGLDK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA+W SHAVRGDFG T+TGQPV ELGRRIGVSLRLL+VGS+ GTV GVV GAWG Sbjct 61 PIPLRYAHWASHAVRGDFGVTVTGQPVSDELGRRIGVSLRLLLVGSLAGTVIGVVAGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 A+RQYRLSDRV+T ALLVLS PTFV+ANL+ILGALRVNWA+G QLFDYTGETSPG+ G Sbjct 121 AVRQYRLSDRVITMAALLVLSVPTFVLANLVILGALRVNWALGAQLFDYTGETSPGLVTG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W L DRLQHL+LPSLTLAL AAA FSRYQRNAMLDVLGQDFIRTARAKGLTRRRAL K Sbjct 181 FWPGLLDRLQHLVLPSLTLALGAAASFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALFK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEW+V+G++TQDTNIVAAITVFS Sbjct 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWVVQGVATQDTNIVAAITVFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GAVVLLAGLLSDVIYA LDPRVRVS Sbjct 301 GAVVLLAGLLSDVIYALLDPRVRVS 325 >gi|15827557|ref|NP_301820.1| binding-protein dependent transport protein [Mycobacterium leprae TN] gi|221230034|ref|YP_002503450.1| putative binding-protein dependent transport protein [Mycobacterium leprae Br4923] gi|13093107|emb|CAC31505.1| probable binding-protein dependent transport protein [Mycobacterium leprae] gi|219933141|emb|CAR71219.1| probable binding-protein dependent transport protein [Mycobacterium leprae Br4923] Length=325 Score = 537 bits (1384), Expect = 8e-151, Method: Compositional matrix adjust. Identities = 271/325 (84%), Positives = 300/325 (93%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M R+LARRLLNY+VLLALASFLTYCLTS+AF+PL+SL+QRSP PPQA++DAKAH LGLD+ Sbjct 1 MMRFLARRLLNYVVLLALASFLTYCLTSMAFAPLDSLLQRSPHPPQAMVDAKAHALGLDK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYANW SHA+RGDFGTTITGQPVG+ LGRR+GVSLRLL++GS+ GTV GV GAWG Sbjct 61 PIPIRYANWASHAIRGDFGTTITGQPVGSTLGRRVGVSLRLLIIGSLTGTVLGVTAGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQY+LSDRV+T LALLVLSTPTFV+ANLLIL ALRVNWA GIQLFDYTGETSPGV GG Sbjct 121 AIRQYQLSDRVVTLLALLVLSTPTFVIANLLILSALRVNWAFGIQLFDYTGETSPGVYGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W + DRL+HLILP+LTLAL AAG+SRYQRNAMLDVL QDFIR ARAKGLTRRRALLK Sbjct 181 AWAHVIDRLRHLILPTLTLALVGAAGYSRYQRNAMLDVLSQDFIRAARAKGLTRRRALLK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYGVAGLVTGA+FVEKIFGWHGMGEWMV+G++TQDTNI+AAIT+F Sbjct 241 HGLRTALIPMATLFAYGVAGLVTGALFVEKIFGWHGMGEWMVQGVATQDTNIIAAITIFF 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 G V+LLAGLLSDVIYAALDPRVRVS Sbjct 301 GTVILLAGLLSDVIYAALDPRVRVS 325 >gi|108800892|ref|YP_641089.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. MCS] gi|119870032|ref|YP_939984.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. KMS] gi|108771311|gb|ABG10033.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. MCS] gi|119696121|gb|ABL93194.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. KMS] Length=325 Score = 533 bits (1374), Expect = 1e-149, Method: Compositional matrix adjust. Identities = 265/325 (82%), Positives = 295/325 (91%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNY+VLLALASFLT+ LTSL F PL+SL+QR+PRPPQ+ IDAKA +L LD+ Sbjct 1 MTRFLARRLLNYVVLLALASFLTFTLTSLTFEPLDSLLQRNPRPPQSTIDAKAAELNLDK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA W+ AVRGDFGTTITGQPV ELGRRIGVSLRLLV+GSV GTV GVV+GAWG Sbjct 61 PIPVRYAQWLGDAVRGDFGTTITGQPVSDELGRRIGVSLRLLVIGSVLGTVIGVVVGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRV+T L+LLVLS PTFV+ANLLILGAL N +G+QLF+YTGETSP GG Sbjct 121 AIRQYRLSDRVITLLSLLVLSAPTFVIANLLILGALNANSWLGVQLFEYTGETSPDAVGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 +D+ DRLQHLILP++TLALAA AGFSRYQRNAMLDVLGQDFIRTARAKGLTRR+AL K Sbjct 181 PFDQFVDRLQHLILPTVTLALAAIAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRQALFK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYGV+GLVTGAVFVEKIFGWHGMGEW+V+GI+TQDTNI+AAITVFS Sbjct 241 HGLRTALIPMATLFAYGVSGLVTGAVFVEKIFGWHGMGEWVVQGIATQDTNIIAAITVFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GA++LLAGLLSDVIYAALDPRVRV Sbjct 301 GAMILLAGLLSDVIYAALDPRVRVQ 325 >gi|126436518|ref|YP_001072209.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. JLS] gi|126236318|gb|ABN99718.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. JLS] Length=325 Score = 533 bits (1373), Expect = 2e-149, Method: Compositional matrix adjust. Identities = 265/325 (82%), Positives = 295/325 (91%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNY+VLLALASFLT+ LTSL F PL+SL+QR+PRPPQ+ IDAKA +L LD+ Sbjct 1 MTRFLARRLLNYVVLLALASFLTFTLTSLTFEPLDSLLQRNPRPPQSTIDAKAAELNLDK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA W+ AVRGDFGTTITGQPV ELGRRIGVSLRLLV+GSV GTV GVV+GAWG Sbjct 61 PIPVRYARWLGDAVRGDFGTTITGQPVSDELGRRIGVSLRLLVIGSVLGTVIGVVVGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRV+T L+LLVLS PTFV+ANLLILGAL N +G+QLF+YTGETSP GG Sbjct 121 AIRQYRLSDRVITLLSLLVLSAPTFVIANLLILGALNANSWLGVQLFEYTGETSPDAVGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 +D+ DRLQHLILP++TLALAA AGFSRYQRNAMLDVLGQDFIRTARAKGLTRR+AL K Sbjct 181 PFDQFVDRLQHLILPTVTLALAAIAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRQALFK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYGV+GLVTGAVFVEKIFGWHGMGEW+V+GI+TQDTNI+AAITVFS Sbjct 241 HGLRTALIPMATLFAYGVSGLVTGAVFVEKIFGWHGMGEWVVQGIATQDTNIIAAITVFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GA++LLAGLLSDVIYAALDPRVRV Sbjct 301 GAMILLAGLLSDVIYAALDPRVRVQ 325 >gi|296170190|ref|ZP_06851784.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895142|gb|EFG74859.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=325 Score = 522 bits (1344), Expect = 3e-146, Method: Compositional matrix adjust. Identities = 268/325 (83%), Positives = 298/325 (92%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M R+LARRLLNY+VLLALASFLT+CLTS+AF PL+SL+QRSPRPPQ+VIDAKAH L LDR Sbjct 1 MIRFLARRLLNYVVLLALASFLTFCLTSVAFRPLDSLLQRSPRPPQSVIDAKAHALNLDR 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA W SHAVRGDFG TITGQPVG L RR+GV+LRLLV+GS+ GT G+V GAWG Sbjct 61 PIPIRYAQWASHAVRGDFGKTITGQPVGATLWRRVGVTLRLLVIGSLAGTALGIVAGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDR++T +ALL+LSTPTFV+A+LLILGALRVNWA+G+QLFDYTGETSPGV GG Sbjct 121 AIRQYRLSDRLVTMVALLILSTPTFVIASLLILGALRVNWALGVQLFDYTGETSPGVVGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 L DRL+HLILP+LTL LAAAAG+SRYQRNAMLDVLGQDFIRTARAKGLTRRRAL+K Sbjct 181 FGHHLMDRLRHLILPTLTLTLAAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIP+ATLFAYGVAGLVTGAVFVEKIFGWHGMGEW+V+GI+TQDT I+AAIT+FS Sbjct 241 HGLRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGIATQDTYIIAAITLFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 G VVLLAGLLSDV YAALDPRVRVS Sbjct 301 GTVVLLAGLLSDVFYAALDPRVRVS 325 >gi|254821264|ref|ZP_05226265.1| ABC transporter, permease protein OppB [Mycobacterium intracellulare ATCC 13950] Length=325 Score = 517 bits (1332), Expect = 8e-145, Method: Compositional matrix adjust. Identities = 274/325 (85%), Positives = 302/325 (93%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNY+VLLALASFLT+CLTS+AF PL+SL+QR+PRPPQAVIDAKAH LGLD Sbjct 1 MTRFLARRLLNYVVLLALASFLTFCLTSVAFKPLDSLLQRNPRPPQAVIDAKAHALGLDE 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 I RYA+W SHAVRGDFG T+TGQPVG L RR+GV+LRLLV+GS+ GTVAG+ GAWG Sbjct 61 AIPIRYAHWASHAVRGDFGKTVTGQPVGESLWRRVGVTLRLLVIGSLVGTVAGIAAGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRV+T +ALLVLSTPTFV+ANLLIL ALRVNWAVG+Q+FDYTGETSPGV+GG Sbjct 121 AIRQYRLSDRVVTMVALLVLSTPTFVIANLLILAALRVNWAVGLQIFDYTGETSPGVSGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 DRL+HL+LPSLTLALAAAAG+SRYQRNAMLDVLGQDFIRTARAKGLTRRRAL+K Sbjct 181 AGAHFFDRLRHLVLPSLTLALAAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIP+ATLFAYGVAGLVTGAVFVEKIFGWHGMGEW+V+GI+TQDTNIVAAITVFS Sbjct 241 HGLRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGIATQDTNIVAAITVFS 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GAVVLLAGLLSDV YAALDPRVRVS Sbjct 301 GAVVLLAGLLSDVFYAALDPRVRVS 325 >gi|120405383|ref|YP_955212.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium vanbaalenii PYR-1] gi|119958201|gb|ABM15206.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium vanbaalenii PYR-1] Length=325 Score = 505 bits (1300), Expect = 4e-141, Method: Compositional matrix adjust. Identities = 250/325 (77%), Positives = 283/325 (88%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNY+VLL LASFLT+ LTS+ FSPL+SL++R+PRPPQAVIDAKA +L LD+ Sbjct 1 MTRFLARRLLNYVVLLGLASFLTFTLTSMTFSPLDSLLERNPRPPQAVIDAKAAELNLDK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RY +WV+ AVRGDFGTT+ GQPV EL RRIGVSLRL+++GS+ GT GVV GAWG Sbjct 61 PIPVRYGDWVAGAVRGDFGTTVGGQPVTDELWRRIGVSLRLVIIGSIVGTFLGVVAGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 A+RQYRLSDRV+TTLALL LS PTFV+ANLLIL AL VN +G+Q+F+YTGETS GG Sbjct 121 AVRQYRLSDRVITTLALLTLSAPTFVIANLLILAALNVNSFLGLQVFEYTGETSSDAVGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W++ DRLQHL+LP+ TLAL A AGFSRYQRNAMLDVL QDFIRTARAKGLTRRRAL K Sbjct 181 GWNQFVDRLQHLVLPTFTLALGAIAGFSRYQRNAMLDVLSQDFIRTARAKGLTRRRALFK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYGV GL TGAVFVEKIFGWHG+GEW V+GI +QDTNIV AITVF+ Sbjct 241 HGLRTALIPMATLFAYGVGGLFTGAVFVEKIFGWHGIGEWFVQGIGSQDTNIVVAITVFT 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 G VLLAGLLSDV+YAALDPRVRVS Sbjct 301 GVTVLLAGLLSDVLYAALDPRVRVS 325 >gi|118465746|ref|YP_880675.1| ABC transporter permease [Mycobacterium avium 104] gi|254774310|ref|ZP_05215826.1| ABC transporter, permease protein OppB [Mycobacterium avium subsp. avium ATCC 25291] gi|118167033|gb|ABK67930.1| ABC transporter, permease protein OppB [Mycobacterium avium 104] Length=324 Score = 499 bits (1286), Expect = 2e-139, Method: Compositional matrix adjust. Identities = 276/325 (85%), Positives = 304/325 (94%), Gaps = 1/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNYLVLLALASFLT+CLTS+AF PL+SL+QRSPRPPQAVIDAKAH LGLD Sbjct 1 MTRFLARRLLNYLVLLALASFLTFCLTSVAFKPLDSLLQRSPRPPQAVIDAKAHSLGLDE 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA+W SHAVRGDFG T+TGQPVG LGRR+GV+LRLLV+GS+ GTVAG+ GAWG Sbjct 61 PIPIRYAHWASHAVRGDFGKTVTGQPVGASLGRRVGVTLRLLVIGSLIGTVAGIAAGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRV+T LALLVLSTPTFV+A+LLIL ALRVNWA+G+Q+FDYTGETSPGV GG Sbjct 121 AIRQYRLSDRVVTMLALLVLSTPTFVIASLLILAALRVNWALGVQVFDYTGETSPGVTGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 L DRL+HL+LPSLTLALAAAAG+SRYQRNAMLDVLGQDFIRTARAKGLTRRRAL+K Sbjct 181 AAALL-DRLRHLVLPSLTLALAAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVK 239 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIP+ATLFAYGVAGLVTGAVFVEKIFGWHGMGEW+V+G++TQDTNIVAAIT+FS Sbjct 240 HGLRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGVATQDTNIVAAITLFS 299 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GAVVLLAGLLSDV YAALDPRVRVS Sbjct 300 GAVVLLAGLLSDVFYAALDPRVRVS 324 >gi|41408586|ref|NP_961422.1| hypothetical protein MAP2488 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396944|gb|AAS04805.1| OppB [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458534|gb|EGO37504.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Mycobacterium avium subsp. paratuberculosis S397] Length=324 Score = 499 bits (1286), Expect = 2e-139, Method: Compositional matrix adjust. Identities = 276/325 (85%), Positives = 304/325 (94%), Gaps = 1/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNYLVLLALASFLT+CLTS+AF PL+SL+QRSPRPPQAVIDAKAH LGLD Sbjct 1 MTRFLARRLLNYLVLLALASFLTFCLTSVAFKPLDSLLQRSPRPPQAVIDAKAHSLGLDE 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA+W SHAVRGDFG T+TGQPVG LGRR+GV+LRLLV+GS+ GTVAG+ GAWG Sbjct 61 PIPIRYAHWASHAVRGDFGKTVTGQPVGASLGRRVGVTLRLLVIGSLIGTVAGIAAGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRV+T LALLVLSTPTFV+A+LLIL ALRVNWA+G+Q+FDYTGETSPGV GG Sbjct 121 AIRQYRLSDRVVTMLALLVLSTPTFVIASLLILAALRVNWALGVQVFDYTGETSPGVTGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 L DRL+HL+LPSLTLALAAAAG+SRYQRNAMLDVLGQDFIRTARAKGLTRRRAL+K Sbjct 181 A-AALVDRLRHLVLPSLTLALAAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVK 239 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIP+ATLFAYGVAGLVTGAVFVEKIFGWHGMGEW+V+G++TQDTNIVAAIT+FS Sbjct 240 HGLRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGVATQDTNIVAAITLFS 299 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GAVVLLAGLLSDV YAALDPRVRVS Sbjct 300 GAVVLLAGLLSDVFYAALDPRVRVS 324 >gi|145222849|ref|YP_001133527.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium gilvum PYR-GCK] gi|315443316|ref|YP_004076195.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease [Mycobacterium sp. Spyr1] gi|145215335|gb|ABP44739.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium gilvum PYR-GCK] gi|315261619|gb|ADT98360.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Mycobacterium sp. Spyr1] Length=325 Score = 499 bits (1285), Expect = 3e-139, Method: Compositional matrix adjust. Identities = 246/325 (76%), Positives = 283/325 (88%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+L RRLL +++LL +ASFLT+ LTS+ F PL+SL++R+PRPPQAVIDAKA +L L+ Sbjct 1 MTRFLVRRLLKFVILLGVASFLTFALTSVMFQPLDSLLERNPRPPQAVIDAKAEELNLNA 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYA+WVS AVRGDFGTT+ GQPV EL RRIGVSLRL+++GSV GTV GVV GAWG Sbjct 61 PIPVRYADWVSGAVRGDFGTTVGGQPVSDELWRRIGVSLRLVLIGSVIGTVLGVVAGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRV+T LALL+LS PTFV+ANLLILGAL+ N A+G+QLF+YTGE+SP GG Sbjct 121 AIRQYRLSDRVITALALLILSAPTFVIANLLILGALQANSALGVQLFEYTGESSPDAVGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W++ DR QHL+LP+ TLAL A AG+SRYQRNAMLDVLGQDFIRTARAKGLTRR+AL K Sbjct 181 GWNQFVDRAQHLLLPTFTLALTAMAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRQALFK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAY V GL TGAVFVEKIFGWHG+GEW V GI+ QDTNI+ AITVF+ Sbjct 241 HGLRTALIPMATLFAYSVGGLFTGAVFVEKIFGWHGVGEWFVLGIAAQDTNIIVAITVFT 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 GA VLLAGLLSDV+YAALDPRVRVS Sbjct 301 GATVLLAGLLSDVLYAALDPRVRVS 325 >gi|118468691|ref|YP_889246.1| oligopeptide transporter permease AppB [Mycobacterium smegmatis str. MC2 155] gi|118169978|gb|ABK70874.1| oligopeptide transport system permease protein AppB [Mycobacterium smegmatis str. MC2 155] Length=325 Score = 496 bits (1277), Expect = 2e-138, Method: Compositional matrix adjust. Identities = 255/325 (79%), Positives = 291/325 (90%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MTR+LARRLLNY++LLALAS LT+ LTSL+F PL+SL+QR+PRPPQ+ IDAKA +LGLD+ Sbjct 1 MTRFLARRLLNYVILLALASVLTFTLTSLSFDPLDSLLQRNPRPPQSTIDAKAAELGLDK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RY +W S AVRGDFGTT+TGQPV EL RRIGVSLRLL++GS+ GTV GVV+GAWG Sbjct 61 PIPLRYLHWASGAVRGDFGTTVTGQPVSEELWRRIGVSLRLLLLGSILGTVIGVVVGAWG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYRLSDRV+T ++LL+LSTPTFV+ANLLILGAL VN +G++LF+YTGETSP GG Sbjct 121 AIRQYRLSDRVVTVVSLLILSTPTFVIANLLILGALDVNSVLGVRLFEYTGETSPDAVGG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W + DRLQHL+LP+LTLAL AGFSRYQRNAMLDVL QD+IRTARAKGLTRRRAL K Sbjct 181 SWAQFVDRLQHLVLPTLTLALGGIAGFSRYQRNAMLDVLSQDYIRTARAKGLTRRRALFK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAY VAGLVTGAVFVEKIFGWHGMGEW+V+GI+TQDTNI+AAITVF+ Sbjct 241 HGLRTALIPMATLFAYTVAGLVTGAVFVEKIFGWHGMGEWVVQGIATQDTNIIAAITVFT 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 G VVLLAGLLSDVIYA LDPRVRV+ Sbjct 301 GTVVLLAGLLSDVIYAMLDPRVRVT 325 >gi|226364862|ref|YP_002782644.1| ABC transporter permease protein [Rhodococcus opacus B4] gi|226243351|dbj|BAH53699.1| putative ABC transporter permease protein [Rhodococcus opacus B4] Length=325 Score = 448 bits (1152), Expect = 7e-124, Method: Compositional matrix adjust. Identities = 226/324 (70%), Positives = 260/324 (81%), Gaps = 0/324 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MT +L RR LNY VLL LASFLT+ LTSL F PL+SL QR+PRPPQ+VIDAKA +L LD Sbjct 1 MTGFLLRRALNYAVLLLLASFLTFSLTSLTFRPLDSLEQRNPRPPQSVIDAKAAELHLDD 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYANW+ V GDFGTTITGQPV ELGRRI VS+RLL++GSV G V GV+IGA G Sbjct 61 PIPVRYANWLGGVVHGDFGTTITGQPVSDELGRRILVSMRLLILGSVIGAVLGVLIGAAG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQY+ SD T ++LL+LS P F+VA LL GAL++N A G Q+F YTGE+S G Sbjct 121 AIRQYKFSDYFSTVVSLLILSAPVFLVATLLKYGALQINSATGNQIFLYTGESSASTITG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W + DR+QHL+LP++ LAL + AG+SRYQRNAMLDVLG DFIRTARAKGLTRR ALL+ Sbjct 181 FWPQFVDRIQHLVLPTVALALGSIAGYSRYQRNAMLDVLGSDFIRTARAKGLTRRAALLE 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYG LV GA F EKIFGWHG+GEW+V GI TQDTNIV AIT F+ Sbjct 241 HGLRTALIPMATLFAYGFGALVVGATFTEKIFGWHGIGEWIVIGIDTQDTNIVVAITSFT 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRV 324 G +VLL+GLLSDV+YAALDPRVRV Sbjct 301 GLIVLLSGLLSDVVYAALDPRVRV 324 >gi|111022318|ref|YP_705290.1| peptide ABC transporter permease [Rhodococcus jostii RHA1] gi|110821848|gb|ABG97132.1| ABC oligopeptide transporter, permease component [Rhodococcus jostii RHA1] Length=325 Score = 442 bits (1138), Expect = 3e-122, Method: Compositional matrix adjust. Identities = 223/324 (69%), Positives = 257/324 (80%), Gaps = 0/324 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M +L RR LNY+VLL LASFLT+ L SL F PL+SL QR+PRPPQ+VIDAKA +L LD Sbjct 1 MAGFLLRRALNYVVLLLLASFLTFSLASLTFRPLDSLEQRNPRPPQSVIDAKAAELHLDD 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RYANW+ V GDFGTTITGQPV ELGRRI VS+RLL++GSV G V GV+IGA G Sbjct 61 PIPVRYANWLGGVVHGDFGTTITGQPVSDELGRRILVSMRLLILGSVIGAVLGVLIGAAG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQY+ SD T ++LL+LS P F+VA LL GAL++N A G Q+F YTGE+S G Sbjct 121 AIRQYKFSDYFSTVVSLLILSAPVFLVATLLKYGALQINSATGNQIFLYTGESSASTITG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W + DR+QHL+LP++ LAL + AG+SRYQRNAMLDVLG DFIRTARAKGLTRR ALLK Sbjct 181 FWPQFVDRVQHLVLPTIALALGSIAGYSRYQRNAMLDVLGSDFIRTARAKGLTRRAALLK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAYG LV GA F E IFGWHG+GEW+V GI QDTNIV AIT F+ Sbjct 241 HGLRTALIPMATLFAYGFGALVVGATFTETIFGWHGIGEWIVIGIDNQDTNIVVAITSFT 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRV 324 G +VLL+GLLSDV+YAALDPRVRV Sbjct 301 GLIVLLSGLLSDVVYAALDPRVRV 324 >gi|54022133|ref|YP_116375.1| putative ABC transporter permease [Nocardia farcinica IFM 10152] gi|54013641|dbj|BAD55011.1| putative ABC transporter permease [Nocardia farcinica IFM 10152] Length=325 Score = 411 bits (1057), Expect = 7e-113, Method: Compositional matrix adjust. Identities = 218/324 (68%), Positives = 254/324 (79%), Gaps = 0/324 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M +L RR NY+VLL LASFLT+ + L F PL+SL QR+PRPPQAVIDAKA L LD Sbjct 1 MIGFLLRRAANYVVLLLLASFLTFAVAGLTFRPLDSLEQRNPRPPQAVIDAKAEQLHLDE 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PI RY WVS AVRGDFGTT+ GQPV ELGRRIGVSLRLLV+GSV GTV GV+IGA G Sbjct 61 PIPQRYLTWVSGAVRGDFGTTLAGQPVSEELGRRIGVSLRLLVIGSVLGTVLGVLIGAAG 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 AIRQYR SD T ++L++LSTP F++A LL GAL +N G ++F YTGETS G Sbjct 121 AIRQYRFSDYFTTIVSLVLLSTPIFLLATLLKYGALEINSLTGQRIFLYTGETSAHRIEG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 +W +L DRLQHL+LP+L LAL AG+SRYQRNAMLDVL DFIRTARAKGLTR RAL K Sbjct 181 LWPQLLDRLQHLVLPTLALALGGMAGYSRYQRNAMLDVLQSDFIRTARAKGLTRGRALYK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPMATLFAY + GL+TGA F EKIFGWHG+GEW+V ++ QD +V +TVF+ Sbjct 241 HGLRTALIPMATLFAYSLGGLITGATFTEKIFGWHGVGEWLVDAVNAQDIYVVVTVTVFT 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRV 324 G VVL++GLLSD++YA LDPRVRV Sbjct 301 GLVVLVSGLLSDIVYAILDPRVRV 324 >gi|317506570|ref|ZP_07964363.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974] gi|316255132|gb|EFV14409.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974] Length=325 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 185/325 (57%), Positives = 232/325 (72%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M +L +RL +VLL LA+FLT+ L S F P+ + QR+P PP A I AK H+L LD+ Sbjct 1 MLFFLGKRLAGAIVLLFLATFLTFVLASETFDPMAAYKQRNPPPPAAAIQAKEHELRLDK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 P+L RYA W+ RG FG TIT PV ELG R+GV+LRL+++G++ GT GV++G Sbjct 61 PVLERYALWLGDISRGSFGNTITDTPVAPELGHRVGVTLRLVLLGALIGTFFGVLLGVLS 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 A+RQY+ +DR T A +VLS PTF+VA + L AL+ N VG Q+F YTGE S G Sbjct 121 AVRQYKFTDRATTFAAFVVLSAPTFLVATIFKLLALKANSVVGEQVFLYTGEQSAIPPEG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W D QHL+LP+LTLA+ AA FSRYQRNAMLDVLG DF+RTARAKGLT+ RAL K Sbjct 181 FWAGFADSGQHLVLPTLTLAVIEAAMFSRYQRNAMLDVLGSDFLRTARAKGLTKTRALFK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPM TLFA+G GL+ GA F E++FGW+G+G W++ GI QDTNIV AIT F+ Sbjct 241 HGLRTALIPMTTLFAFGFGGLIAGATFTERVFGWNGVGSWLIDGIGRQDTNIVTAITFFA 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 V+LLAGL++D+ LDPRVRVS Sbjct 301 AVVILLAGLVADIAQGVLDPRVRVS 325 >gi|296393469|ref|YP_003658353.1| binding-protein-dependent transporter inner membrane component [Segniliparus rotundus DSM 44985] gi|296180616|gb|ADG97522.1| binding-protein-dependent transport systems inner membrane component [Segniliparus rotundus DSM 44985] Length=325 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 178/325 (55%), Positives = 226/325 (70%), Gaps = 0/325 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M +L +RL +VLL A+FLT+ L S F P+ + QR+P PP I AK H+L LD+ Sbjct 1 MLFFLGKRLAGAVVLLVFATFLTFVLASETFDPMAAYKQRNPPPPAEAIHAKEHELRLDK 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 P+L RYA W+ FG T+ PV ELG RIGV+LRL+++G++ GT GV++G Sbjct 61 PVLERYALWLGDIGHASFGNTVADTPVAPELGHRIGVTLRLVLLGALLGTFFGVLLGVAS 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 A+RQY+ +DR T A +VLS P F+VA + L AL N +G Q+F YTGE S G Sbjct 121 AVRQYKFTDRATTFAAFVVLSAPAFLVATIFKLLALTANSLIGRQVFLYTGEQSATAPQG 180 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W D QHL+LP+LTLA+ AA FSRYQRNAMLDVLG DF+RTARAKGLT+ +AL K Sbjct 181 FWAGFADSGQHLVLPTLTLAVIEAAMFSRYQRNAMLDVLGSDFLRTARAKGLTKTKALFK 240 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 HGLRTALIPM TLFA+G GL+ GA F E+IFGW+G+G W++ GI +QDTNIV A+T F+ Sbjct 241 HGLRTALIPMTTLFAFGFGGLIAGATFTEQIFGWNGVGRWLIDGIGSQDTNIVTAVTFFA 300 Query 301 GAVVLLAGLLSDVIYAALDPRVRVS 325 V+LLAGL++DV LDPRVRVS Sbjct 301 AVVILLAGLVADVAQGVLDPRVRVS 325 >gi|302525741|ref|ZP_07278083.1| nickel ABC transporter, permease subunit NikB [Streptomyces sp. AA4] gi|302434636|gb|EFL06452.1| nickel ABC transporter, permease subunit NikB [Streptomyces sp. AA4] Length=325 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 181/326 (56%), Positives = 232/326 (72%), Gaps = 3/326 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M +L RRL+NY+ L +A+F + L SL+FSPL++L R+P PQA IDAKA +L LD+ Sbjct 1 MIGFLLRRLVNYIALCLVATFAAFSLASLSFSPLDALKLRNPPAPQATIDAKAAELHLDQ 60 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 I R+ W+ +G+FG T+ Q + EL RR GVSLRL ++G G + GV++G Sbjct 61 AIPHRFFTWLGGVFQGNFGRTVADQAITDELFRRAGVSLRLFLLGITIGIIIGVLVGVVS 120 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAV--GIQLFDYTGETSPGVA 178 AIRQY++SD + TT + +VLSTP FV+A +L GA VN + G Q F GE + Sbjct 121 AIRQYKISDYLATTFSFVVLSTPVFVIATILKAGAQSVNDNLLDGYQFFIVQGEGG-AID 179 Query 179 GGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRAL 238 GG + L DRLQH+I+P+L + L A +SRYQR+AMLDVLG DF+RTA+AKGLTRRRAL Sbjct 180 GGFGEVLLDRLQHIIVPTLAIVLTQVAYYSRYQRSAMLDVLGSDFLRTAQAKGLTRRRAL 239 Query 239 LKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITV 298 KHGLRTALIPMATLFA+G L+TG VF EKIFGW+GMG+W+V GI QDTNIV +T+ Sbjct 240 FKHGLRTALIPMATLFAFGFGLLITGGVFTEKIFGWYGMGDWLVTGIQKQDTNIVTTVTL 299 Query 299 FSGAVVLLAGLLSDVIYAALDPRVRV 324 F VLLAG L+DV+YAALDPRVR+ Sbjct 300 FIAICVLLAGWLADVLYAALDPRVRI 325 >gi|256394726|ref|YP_003116290.1| binding-protein-dependent transporters inner membrane component [Catenulispora acidiphila DSM 44928] gi|256360952|gb|ACU74449.1| binding-protein-dependent transport systems inner membrane component [Catenulispora acidiphila DSM 44928] Length=326 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 178/326 (55%), Positives = 228/326 (70%), Gaps = 2/326 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M +L RR++NYLVL+ LA+ L Y L + + SP E +R P PP A ++A L L+ Sbjct 1 MGPFLLRRIVNYLVLITLATCLGYLLAASSLSPREYFSRRQPPPPAASVNATLTQLNLND 60 Query 61 --PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGA 118 P+ R+ +W + GD G TI V E+GRRIGV+LRL++VG++ G + GV +G Sbjct 61 KTPLPDRFEHWAGGVLTGDLGKTIDDTSVSAEMGRRIGVTLRLVLVGTISGALVGVALGF 120 Query 119 WGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVA 178 AIRQYR SD +T L+ LVLSTP F++A LL +G ++VN A G L YT ET+PG+A Sbjct 121 VSAIRQYRPSDHAITFLSFLVLSTPVFLLAVLLKIGTVKVNQAAGTTLLPYTNETTPGLA 180 Query 179 GGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRAL 238 GG L DR QHL++P+L+L L AA FSRYQR+AMLDVLG D+IRTARA G+ R AL Sbjct 181 GGWLRHLTDRAQHLVVPTLSLMLGQAALFSRYQRSAMLDVLGADYIRTARATGMRRGPAL 240 Query 239 LKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITV 298 +KHGLRTALIPMATLFAY + L+TG F EKIFGWHGMGEW V I +D N VAA+ + Sbjct 241 VKHGLRTALIPMATLFAYQMGLLLTGVTFTEKIFGWHGMGEWFVDSIGREDVNSVAAMVL 300 Query 299 FSGAVVLLAGLLSDVIYAALDPRVRV 324 F+ +VL+AGLLSD+ +A LDPRVRV Sbjct 301 FTAVLVLIAGLLSDIAHALLDPRVRV 326 >gi|29829589|ref|NP_824223.1| peptide ABC transporter permease [Streptomyces avermitilis MA-4680] gi|29606697|dbj|BAC70758.1| putative peptide ABC transporter permease protein [Streptomyces avermitilis MA-4680] Length=331 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 176/322 (55%), Positives = 219/322 (69%), Gaps = 2/322 (0%) Query 4 YLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR--P 61 YLA+RL Y VLL A L+Y L S A P R P + ++ ++G++ Sbjct 7 YLAKRLGYYAVLLLAAVCLSYLLASFALDPRAYYEGRQPPVSASAVNHHLTEIGVNDHAS 66 Query 62 ILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWGA 121 +LAR+ W HAVRGD G TI G V E GRRIGVSLRLL+ G+V GTVAGV+IGAW A Sbjct 67 LLARFLRWAGHAVRGDLGRTIDGTSVNAEFGRRIGVSLRLLLAGTVLGTVAGVLIGAWTA 126 Query 122 IRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGGV 181 +RQYR SDR +T + +LSTP F++A LL GA+ N G L +TGE SPG+ GG Sbjct 127 VRQYRFSDRTVTFASFALLSTPVFLLAILLKTGAIWFNRTTGTDLIQFTGEKSPGLTGGF 186 Query 182 WDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLKH 241 L DR HL+LP+L++AL A AG+SRYQR+ MLDVLG D++RTARAKGL RR LLKH Sbjct 187 GAVLQDRAVHLLLPTLSVALFAIAGYSRYQRSTMLDVLGSDYLRTARAKGLGRRAVLLKH 246 Query 242 GLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFSG 301 GLRTALIPM+T F+YG L TGA+F E IFGWHGMGEW + I D N V A+ +F+ Sbjct 247 GLRTALIPMSTYFSYGFLALFTGAIFTETIFGWHGMGEWFISSIGKNDVNSVVAVNLFAA 306 Query 302 AVVLLAGLLSDVIYAALDPRVR 323 VLL+G L+DV++AALDPR+R Sbjct 307 VTVLLSGFLADVLHAALDPRIR 328 >gi|271963486|ref|YP_003337682.1| binding-protein-dependent transporter inner membrane component [Streptosporangium roseum DSM 43021] gi|270506661|gb|ACZ84939.1| binding-protein-dependent transport systems inner membrane component [Streptosporangium roseum DSM 43021] Length=325 Score = 338 bits (867), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 167/327 (52%), Positives = 230/327 (71%), Gaps = 4/327 (1%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M YL +RL++ ++L+A+A+ + Y L + + +P R P +AV+D D L+ Sbjct 1 MGSYLLKRLISNVLLVAIAASMAYFLAATSLNPRAKYEGRQPPVAEAVVDGLLDDYNLND 60 Query 61 --PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGA 118 P+ RY WVS V+GD G T G+ V E+GRRIGVSLRLL++G++ G+ GV +GA Sbjct 61 KTPVFERYVTWVSGVVQGDLGRTWEGKEVNGEMGRRIGVSLRLLLIGTIVGSGIGVAVGA 120 Query 119 WGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVA 178 + A+RQY +SDRV+ + ++++ P FV+A +L + A+ +N A+G L +YTGE +PG++ Sbjct 121 YAAVRQYTISDRVIGVTSFVIMAIPVFVIATMLTIAAVGLNGALGFTLLEYTGEYTPGLS 180 Query 179 GGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRAL 238 G W++ RL HLILP+++L L A +SR QRN MLDVLGQDF+RTARAKGL+RR+AL Sbjct 181 G--WEQFTSRLNHLILPTISLCLGQIAFYSRIQRNMMLDVLGQDFVRTARAKGLSRRKAL 238 Query 239 LKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITV 298 KH LRTALIP AT FA+ L+TGA+F EKIFGWHGMG W+V I DTN VAA+++ Sbjct 239 FKHALRTALIPAATYFAFAFGTLLTGAIFTEKIFGWHGMGAWLVDSIQQNDTNAVAAVSL 298 Query 299 FSGAVVLLAGLLSDVIYAALDPRVRVS 325 F+ VL+AGLLSD+ AALDPRVRVS Sbjct 299 FAAVCVLVAGLLSDLAVAALDPRVRVS 325 >gi|271968343|ref|YP_003342539.1| binding-protein-dependent transporter inner membrane component [Streptosporangium roseum DSM 43021] gi|270511518|gb|ACZ89796.1| binding-protein-dependent transport systems inner membrane component [Streptosporangium roseum DSM 43021] Length=327 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 174/326 (54%), Positives = 224/326 (69%), Gaps = 2/326 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGL-D 59 M +L RRLLNYLVL+ +A+ L Y L + A +P + R+P PQAVIDA+ +L L D Sbjct 1 MAGFLLRRLLNYLVLIVVATSLAYMLAASALNPRSNYEGRNPPIPQAVIDARLTELNLND 60 Query 60 R-PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGA 118 R P+ RY W V GDFG T+ G VG +LGRR GV+LRL+ +G + G+V GV +GA Sbjct 61 RTPLFERYLTWAGDVVHGDFGKTVAGGSVGQDLGRRAGVTLRLITIGLILGSVTGVFVGA 120 Query 119 WGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVA 178 + A++QY + DR+ T + +VL+ PT V+AN+LI+ + N VG Q+F +GE +PG+ Sbjct 121 YAAVKQYGVFDRLSTGASFVVLAVPTVVLANILIITGVWFNELVGAQVFLVSGEATPGLR 180 Query 179 GGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRAL 238 GG ++ DR+QHLILP+L+L+L A +SRYQRN MLDVLG DFIRTA AKGL RR AL Sbjct 181 GGFPTQVVDRVQHLILPTLSLSLGLIAVYSRYQRNMMLDVLGADFIRTAMAKGLRRRTAL 240 Query 239 LKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITV 298 +H LRTALIP T FA+ L+ G F EKIFGWHGMGE +V IST D N VAAI+ Sbjct 241 TRHALRTALIPAVTYFAFTFGSLLVGTTFTEKIFGWHGMGEQLVNSISTNDVNTVAAISC 300 Query 299 FSGAVVLLAGLLSDVIYAALDPRVRV 324 F+ VL A L SDV++A LDPRVRV Sbjct 301 FAAFAVLAASLASDVLHAVLDPRVRV 326 >gi|297198903|ref|ZP_06916300.1| peptide ABC transporter permease [Streptomyces sviceus ATCC 29083] gi|197711177|gb|EDY55211.1| peptide ABC transporter permease [Streptomyces sviceus ATCC 29083] Length=326 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 173/327 (53%), Positives = 234/327 (72%), Gaps = 3/327 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGL-- 58 M R++ RR +NYL L+ +A+ LTY L +++ +P + R+P+P A + + +D L Sbjct 1 MGRFMLRRFVNYLALVIIAASLTYALAAISLNPRANFEGRNPKPSAASVTSTLNDYNLNP 60 Query 59 DRPILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGA 118 D+P+L R+ +W + GD G T+TG V E GRR+GVS RLL++ ++ G+V GV++GA Sbjct 61 DKPLLVRFGHWANGVAHGDLGRTVTGGQVNDEFGRRVGVSTRLLLISTLLGSVGGVMVGA 120 Query 119 WGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVA 178 WGAIRQYR SDR+ T + VL+ P FV+A L L A+ +N A G ++ +YTGE PG++ Sbjct 121 WGAIRQYRASDRISTLASFGVLAMPVFVIAVTLKLWAIDLNDAAGHKVIEYTGEYDPGLS 180 Query 179 GGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRAL 238 G D L RLQHL+LPSLTL + A +SRYQR++MLDVLG DF+RTARAKGL+RR AL Sbjct 181 G-TGDILLSRLQHLLLPSLTLIIIQIALYSRYQRSSMLDVLGSDFLRTARAKGLSRRAAL 239 Query 239 LKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITV 298 +KHGLRTA++P+ L Y V L TGA F EKIFGWHGMGEW++ IST D N AA+ + Sbjct 240 MKHGLRTAVLPVVPLLVYNVVLLFTGATFTEKIFGWHGMGEWLINSISTNDVNATAAVGL 299 Query 299 FSGAVVLLAGLLSDVIYAALDPRVRVS 325 F+ +VL+AGLLSD++YAALDPRVRVS Sbjct 300 FTAVIVLIAGLLSDLLYAALDPRVRVS 326 >gi|295837651|ref|ZP_06824584.1| peptide ABC transporter, permease [Streptomyces sp. SPB74] gi|197695985|gb|EDY42918.1| peptide ABC transporter, permease [Streptomyces sp. SPB74] Length=326 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 163/294 (56%), Positives = 207/294 (71%), Gaps = 2/294 (0%) Query 32 SPLESLMQRSPRPPQAVIDAKAHDLGLDR--PILARYANWVSHAVRGDFGTTITGQPVGT 89 P R P P A + A LGLD P+ AR A+W + GD G T+ V Sbjct 32 DPRAYFEGRRPPPDPAAVTAHLRALGLDEGTPLPARLAHWFGGLLHGDLGRTLDDTSVAA 91 Query 90 ELGRRIGVSLRLLVVGSVFGTVAGVVIGAWGAIRQYRLSDRVMTTLALLVLSTPTFVVAN 149 ELGRRIGVSLRLL+VG+V GT+ GV+ GAW A+RQYRLSDRV+T ++ L+LSTPTF++A Sbjct 92 ELGRRIGVSLRLLLVGTVLGTLGGVLAGAWTAVRQYRLSDRVVTLVSFLLLSTPTFLLAV 151 Query 150 LLILGALRVNWAVGIQLFDYTGETSPGVAGGVWDRLGDRLQHLILPSLTLALAAAAGFSR 209 LL +GA+++N +G L +TGE PG G+ LGDR HL+LP+L++ L AA +SR Sbjct 152 LLKIGAIKLNSVLGTDLIRFTGERDPGPHPGLLATLGDRSVHLLLPTLSMGLVTAASYSR 211 Query 210 YQRNAMLDVLGQDFIRTARAKGLTRRRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVE 269 YQRN MLDVLG D++RTARAKGL RR LL+HGLRTALIPMAT F+YG L TGA F E Sbjct 212 YQRNTMLDVLGADYLRTARAKGLGRRATLLRHGLRTALIPMATYFSYGFLALFTGATFTE 271 Query 270 KIFGWHGMGEWMVRGISTQDTNIVAAITVFSGAVVLLAGLLSDVIYAALDPRVR 323 +FGWHGMGEW++ ++ D N V A++ F+ VVLL+G L+DV++AALDPRVR Sbjct 272 IVFGWHGMGEWLIASVADNDVNAVVAVSGFAAVVVLLSGFLADVLHAALDPRVR 325 >gi|318061431|ref|ZP_07980152.1| peptide ABC transporter permease protein [Streptomyces sp. SA3_actG] gi|318078262|ref|ZP_07985594.1| peptide ABC transporter permease protein [Streptomyces sp. SA3_actF] Length=326 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 163/294 (56%), Positives = 206/294 (71%), Gaps = 2/294 (0%) Query 32 SPLESLMQRSPRPPQAVIDAKAHDLGLDR--PILARYANWVSHAVRGDFGTTITGQPVGT 89 P R P P A + A LGLD P+ AR A+W + GD G T+ V Sbjct 32 DPRAYFEGRRPPPDPAAVTAHLRTLGLDDTTPLPARLAHWSGGLLHGDLGRTLDDTSVAA 91 Query 90 ELGRRIGVSLRLLVVGSVFGTVAGVVIGAWGAIRQYRLSDRVMTTLALLVLSTPTFVVAN 149 ELGRRIGVSLRLL+ G+V GT+ GV+ GAW A+RQYRLSDRV+T ++ L+LSTPTF++A Sbjct 92 ELGRRIGVSLRLLLAGTVLGTLGGVLAGAWTAVRQYRLSDRVVTLVSFLLLSTPTFLLAV 151 Query 150 LLILGALRVNWAVGIQLFDYTGETSPGVAGGVWDRLGDRLQHLILPSLTLALAAAAGFSR 209 LL +GA+++N +G L +TGE PG GV LGDR HL+LP+L++ L AA +SR Sbjct 152 LLKIGAIKLNSVLGTDLIRFTGERDPGPHPGVLATLGDRGVHLLLPTLSMGLVTAASYSR 211 Query 210 YQRNAMLDVLGQDFIRTARAKGLTRRRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVE 269 YQRN MLDVLG D++RTARAKGL RR LL+HGLRTALIPMAT F+YG L TGA F E Sbjct 212 YQRNTMLDVLGADYLRTARAKGLGRRATLLRHGLRTALIPMATYFSYGFLALFTGATFTE 271 Query 270 KIFGWHGMGEWMVRGISTQDTNIVAAITVFSGAVVLLAGLLSDVIYAALDPRVR 323 +FGWHGMGEW++ ++ D N V A++ F+ VVLL+G L+DV++AALDPRVR Sbjct 272 IVFGWHGMGEWLIDSVADNDVNSVVAVSGFAAVVVLLSGFLADVLHAALDPRVR 325 >gi|302520635|ref|ZP_07272977.1| peptide ABC transporter permease [Streptomyces sp. SPB78] gi|302429530|gb|EFL01346.1| peptide ABC transporter permease [Streptomyces sp. SPB78] Length=326 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 163/294 (56%), Positives = 206/294 (71%), Gaps = 2/294 (0%) Query 32 SPLESLMQRSPRPPQAVIDAKAHDLGLDR--PILARYANWVSHAVRGDFGTTITGQPVGT 89 P R P P A + A LGLD P+ AR A+W + GD G T+ V Sbjct 32 DPRAYFEGRRPPPDPAAVTAHLRTLGLDDTTPLPARLAHWSGGLLHGDLGRTLDDTSVAA 91 Query 90 ELGRRIGVSLRLLVVGSVFGTVAGVVIGAWGAIRQYRLSDRVMTTLALLVLSTPTFVVAN 149 ELGRRIGVSLRLL+ G+V GT+ GV+ GAW A+RQYRLSDRV+T ++ L+LSTPTF++A Sbjct 92 ELGRRIGVSLRLLLAGTVLGTLGGVLAGAWTAVRQYRLSDRVVTLVSFLLLSTPTFLLAV 151 Query 150 LLILGALRVNWAVGIQLFDYTGETSPGVAGGVWDRLGDRLQHLILPSLTLALAAAAGFSR 209 LL +GA+++N +G L +TGE PG GV LGDR HL+LP+L++ L AA +SR Sbjct 152 LLKIGAIKLNSVLGTDLIRFTGERDPGPHPGVLATLGDRGVHLLLPTLSMGLVTAASYSR 211 Query 210 YQRNAMLDVLGQDFIRTARAKGLTRRRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVE 269 YQRN MLDVLG D++RTARAKGL RR LL+HGLRTALIPMAT F+YG L TGA F E Sbjct 212 YQRNTMLDVLGADYLRTARAKGLGRRATLLRHGLRTALIPMATYFSYGFLALFTGATFTE 271 Query 270 KIFGWHGMGEWMVRGISTQDTNIVAAITVFSGAVVLLAGLLSDVIYAALDPRVR 323 +FGWHGMGEW++ ++ D N V A++ F+ VVLL+G L+DV++AALDPRVR Sbjct 272 IVFGWHGMGEWLIDSVADNDVNSVVAVSGFAAVVVLLSGFLADVLHAALDPRVR 325 >gi|297559512|ref|YP_003678486.1| binding-protein-dependent transporters inner membrane component [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843960|gb|ADH65980.1| binding-protein-dependent transport systems inner membrane component [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=328 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 151/324 (47%), Positives = 208/324 (65%), Gaps = 2/324 (0%) Query 3 RYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR-- 60 ++LARRLLNY+VL+ LA+ Y L + P Q P P ++A+ L L+ Sbjct 5 KFLARRLLNYVVLIFLATSFAYLLAATNLYPRGYFEQMQPPPTPEAVNAQLDALNLNDQA 64 Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 P+ RY W+ V+GDFG TI G V ++ + GV+LRL+ V +V G+V G+ +GA+ Sbjct 65 PLAERYVTWLGGVVQGDFGKTIQGGDVTDQMWMKAGVTLRLITVATVLGSVIGIAVGAYA 124 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 A+RQYR D+ T + VLS PT V+A ++ + A+ +N +G QL Y+GE + G G Sbjct 125 AVRQYRRFDKAATAASFFVLSVPTVVIAIVVQVLAVTINDGLGFQLLRYSGEYAAGFDGT 184 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 W+ L +R+ H ILP++ LA+A A F+RYQRN MLDVL DF+RTA AKGLTRR+AL K Sbjct 185 WWELLLNRVHHAILPTIVLAVALFASFARYQRNMMLDVLNADFVRTAMAKGLTRRKALFK 244 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 H LRTALIP T F + LV+GA F EKI+GWHGMG W++ I D ++VAA++ F Sbjct 245 HALRTALIPTITYFTFTFGALVSGATFTEKIYGWHGMGAWLIDSIFRHDVHVVAAVSWFM 304 Query 301 GAVVLLAGLLSDVIYAALDPRVRV 324 ++ A LSD++YA LDPRVRV Sbjct 305 AITIMAASFLSDILYAWLDPRVRV 328 >gi|227494777|ref|ZP_03925093.1| peptide ABC superfamily ATP binding cassette transporter permease protein [Actinomyces coleocanis DSM 15436] gi|226831777|gb|EEH64160.1| peptide ABC superfamily ATP binding cassette transporter permease protein [Actinomyces coleocanis DSM 15436] Length=327 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 149/329 (46%), Positives = 211/329 (65%), Gaps = 6/329 (1%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M YLARRL NY +LL +A L Y + S++ +P + +P A I+ ++++ Sbjct 1 MFYYLARRLANYALLLFVAVSLAYLIASISMNPRSAYDITNPTLDWAAIERTLVSYNISD 60 Query 59 DRPILARYANWVSHA-VRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 P+ RY W+++ D+G G V E+GRR+ VS+RL+++GS G + GVVIG Sbjct 61 TIPLTQRYTTWLTNIFTEWDWGRGPKGAFVNEEIGRRMWVSVRLIIIGSFMGMIGGVVIG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSP-G 176 AW A +QY DR +T +AL+VLSTP V+ANLL +GA + N G F++ GET G Sbjct 121 AWTATKQYTWIDRTITMIALVVLSTPVVVMANLLQIGATQFNLTTGTNFFEFIGETGQIG 180 Query 177 VAGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRR 236 G W + DR QHL+LP+ +++L A +SRYQRN MLD LG D++RTARAKGL + + Sbjct 181 DYPGAW--IVDRAQHLLLPTFSMSLGGMASYSRYQRNLMLDTLGADYVRTARAKGLRKSQ 238 Query 237 ALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAI 296 A+++H LRT+L+PMAT FA+ +AGL GA E+++GWHG+GE+ V I+ QD N AA+ Sbjct 239 AVIRHALRTSLVPMATFFAFAIAGLFLGATVTERVYGWHGLGEYSVNSITGQDINATAAV 298 Query 297 TVFSGAVVLLAGLLSDVIYAALDPRVRVS 325 FSG L LLSD++ +DPRVRVS Sbjct 299 VAFSGVSTLTGALLSDILIVVVDPRVRVS 327 >gi|227497852|ref|ZP_03928037.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Actinomyces urogenitalis DSM 15434] gi|226832736|gb|EEH65119.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Actinomyces urogenitalis DSM 15434] Length=319 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 150/328 (46%), Positives = 208/328 (64%), Gaps = 12/328 (3%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M YLARR+ NY +LL LA+ L Y L S + P+ + + P I A +++ Sbjct 1 MLPYLARRIANYALLLFLATSLAYILASASLDPINNWNREDPTLNWDAIRANLIEYNISS 60 Query 59 DRPILARYANWVSHAVRG-DFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 + P+ RY W+ V D+G T G+ V + +IG S+RL+ G+ G GV +G Sbjct 61 EIPVWDRYVTWLHSIVTSWDWGVTPKGESVNGLISTKIGASIRLVFAGAAIGMTGGVALG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGV 177 AW A RQY+ SDR ++ A++++STP V+A LL + A+++N + G Q+F++TGE S G Sbjct 121 AWTATRQYKFSDRAVSLFAMIIISTPAMVIAILLQVLAVQINRSTGYQIFEFTGEGS-GF 179 Query 178 AGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRA 237 AG RLQHL+LP+L+++L A +SRYQRN MLD LG D++RTARAKGL +R+A Sbjct 180 AG--------RLQHLVLPTLSMSLGGLASYSRYQRNLMLDTLGADYVRTARAKGLIKRKA 231 Query 238 LLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAIT 297 + +H LRTALIPMAT FA+ +AGL TGA E+++GWHGMGE+ V I+ D N A+ Sbjct 232 VTRHALRTALIPMATYFAFALAGLFTGAAITERVYGWHGMGEYSVNSIAGYDINGAVAVV 291 Query 298 VFSGAVVLLAGLLSDVIYAALDPRVRVS 325 FSG L LLSDV A +DPRVRVS Sbjct 292 AFSGLCTLTGALLSDVFVAVVDPRVRVS 319 >gi|311894070|dbj|BAJ26478.1| putative peptide ABC transporter permease protein [Kitasatospora setae KM-6054] Length=327 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 174/327 (54%), Positives = 222/327 (68%), Gaps = 2/327 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGL-D 59 MTRYLA RL Y LL A FL+Y LT A P + PRP A +D + L L D Sbjct 1 MTRYLAGRLGYYAALLLAAVFLSYVLTGSALGPRAYFEAKQPRPSAASVDRQLTALNLND 60 Query 60 R-PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGA 118 R P++ R+ W +RGD G TI G V E GRRI VSLRLL+VGS+ G + GV GA Sbjct 61 RTPVVERFGTWAGGLLRGDLGRTIHGTAVNDEFGRRIWVSLRLLLVGSLLGMLLGVAAGA 120 Query 119 WGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVA 178 W A+RQYR+SDR++T + ++LSTP F+VA LL GA+ A G ++ +TG +P +A Sbjct 121 WSAVRQYRISDRLLTVFSFVLLSTPVFLVALLLKNGAIAAKDAAGHEVVPFTGYETPNLA 180 Query 179 GGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRAL 238 GG+ L D HL+LP+L+LAL A +SRYQR MLDVLG D++RTARAKGLTR RAL Sbjct 181 GGLGTHLADWALHLLLPTLSLALGGLAAYSRYQRATMLDVLGADYLRTARAKGLTRGRAL 240 Query 239 LKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITV 298 ++HGLRTA+IPM T+FAY GL TGA E +FGWHGMGEW ++ ++ QD N VAA+ + Sbjct 241 VRHGLRTAVIPMTTMFAYAFLGLFTGAAITETVFGWHGMGEWFIQAVNEQDVNSVAAVNL 300 Query 299 FSGAVVLLAGLLSDVIYAALDPRVRVS 325 F+ VVL AGLL+D ++AALDPRVR + Sbjct 301 FAAVVVLAAGLLADTLHAALDPRVRTA 327 >gi|343523766|ref|ZP_08760727.1| ABC transporter, permease protein [Actinomyces sp. oral taxon 175 str. F0384] gi|343399983|gb|EGV12504.1| ABC transporter, permease protein [Actinomyces sp. oral taxon 175 str. F0384] Length=319 Score = 281 bits (720), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 151/328 (47%), Positives = 211/328 (65%), Gaps = 12/328 (3%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M YLARR+ NY VLL +A+ L Y L S + P ++ P I A +++ Sbjct 1 MLPYLARRIANYAVLLFIATSLAYLLASASLDPSALWNRQDPSLNWDAIHANLVKYNISH 60 Query 59 DRPILARYANWVSHAV-RGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 D P+ RY W+ + + D+G T G+ + T +G +I VS+RL+ +G+ G V GV +G Sbjct 61 DLPVWDRYVTWLRNVLFHWDWGRTPKGELINTLIGTKIFVSVRLVFLGAAIGMVGGVALG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGV 177 AW A RQYR SDRV + ++++++STP V+A LL + A+++N + G Q+F++TGE G Sbjct 121 AWTATRQYRFSDRVTSLISMIIISTPAMVIAILLQVLAVQINRSSGFQIFEFTGE-GEGA 179 Query 178 AGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRA 237 G RLQHL+LP+L+++L A +SR+QRN MLD LG D++RTARAKGL +R+A Sbjct 180 LG--------RLQHLLLPTLSMSLGGIASYSRFQRNLMLDTLGADYVRTARAKGLIKRKA 231 Query 238 LLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAIT 297 L +H LRTALIPMAT FA+ +A L TGA E+++GWHGMGE+ + IS D N V A+ Sbjct 232 LTRHALRTALIPMATYFAFALATLFTGAAITERVYGWHGMGEYSISAISGMDINGVTAVV 291 Query 298 VFSGAVVLLAGLLSDVIYAALDPRVRVS 325 FSG L LLSDV A +DPRVRVS Sbjct 292 AFSGLCTLTGALLSDVFVAIVDPRVRVS 319 >gi|269127485|ref|YP_003300855.1| binding-protein-dependent transport systems inner membrane component [Thermomonospora curvata DSM 43183] gi|268312443|gb|ACY98817.1| binding-protein-dependent transport systems inner membrane component [Thermomonospora curvata DSM 43183] Length=325 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 169/323 (53%), Positives = 220/323 (69%), Gaps = 5/323 (1%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGL-D 59 M +L RRLL+ +VL+ LA+ LTY L + A P QR+PRPP AV+DA+ L L D Sbjct 1 MAGFLVRRLLHGVVLVVLAASLTYLLAASALRPRAHFEQRNPRPPDAVVDAELTALNLND 60 Query 60 R-PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGA 118 R P+ RYA W AVRGD G T+ G+PV EL RR VSLRLL G + G GV+ GA Sbjct 61 RTPLFRRYATWARAAVRGDLGRTLEGEPVAPELRRRALVSLRLLAAGVLLGGALGVLAGA 120 Query 119 WGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVA 178 AIR+ DR++T + ++LSTP FV+A LL LGA R+N G+QLF++ GE +PG Sbjct 121 GTAIRRNGAGDRLITVCSFVLLSTPVFVLAVLLQLGAERINRLTGVQLFEWVGEYTPGHG 180 Query 179 GGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRAL 238 G RLG+RL+HL+LP++T+ L AA SRYQR+ MLDVLG DF+R A A+GLTRRRAL Sbjct 181 GA---RLGERLRHLLLPTVTVVLVQAAVISRYQRHLMLDVLGADFVRAAMARGLTRRRAL 237 Query 239 LKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITV 298 L+HGLRT L P+ T AY ++ GA F EKIFGWHG+GEW++ + D N+VAA+ + Sbjct 238 LRHGLRTVLAPVTTYLAYTFGAVLLGAFFTEKIFGWHGVGEWLIDSLHRGDVNVVAAVGL 297 Query 299 FSGAVVLLAGLLSDVIYAALDPR 321 + +VLLAGL++DV + LDPR Sbjct 298 LAALLVLLAGLVADVAHRLLDPR 320 >gi|256397417|ref|YP_003118981.1| binding-protein-dependent transporters inner membrane component [Catenulispora acidiphila DSM 44928] gi|256363643|gb|ACU77140.1| binding-protein-dependent transport systems inner membrane component [Catenulispora acidiphila DSM 44928] Length=327 Score = 275 bits (704), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 147/328 (45%), Positives = 206/328 (63%), Gaps = 5/328 (1%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVI--DAKAHDLGL 58 M ++ RRLLNY+VL+ +A+ L Y S AF P + +Q++P P V+ + + Sbjct 1 MGAFIVRRLLNYVVLVFVATSLAYLGASSAFHPKDMYLQKNPPTPAVVMYHELDQRNENP 60 Query 59 DRPILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGA 118 +P+L RYA+WV GDFG T VG + V++RL+ V ++ V G++IG+ Sbjct 61 QKPVLERYAHWVGGVAHGDFGQTWQLDSVGKHFSISVWVTVRLVSVAAILSAVLGILIGS 120 Query 119 WGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVG--IQLFDYTGETSPG 176 + A+RQY+ SD +T + +V + P FV+A LL L A++VN AVG Y GE P Sbjct 121 FQAVRQYKFSDHAITFGSYIVFAMPVFVLAPLLKLIAVQVNKAVGGDTPFLQYQGEIDPN 180 Query 177 VAGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRR 236 A G + +L R HL+LP+++L L A +SRYQR MLDVLG DF+RTARAKGLT+ R Sbjct 181 -ASGFFGQLFSRADHLLLPTISLTLGLIAFYSRYQRGQMLDVLGSDFLRTARAKGLTKGR 239 Query 237 ALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAI 296 A+LKHG+RTA+IP+ TL Y GA+ E++FGW+G+G W + D N VA I Sbjct 240 AILKHGVRTAVIPVMTLVTYSTILTFAGAIITERVFGWNGLGSWFTDATNHSDVNSVAVI 299 Query 297 TVFSGAVVLLAGLLSDVIYAALDPRVRV 324 T+FS +VL+AG+LSDVI A LDPRVR+ Sbjct 300 TLFSAVLVLIAGMLSDVITAVLDPRVRL 327 >gi|260904902|ref|ZP_05913224.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Brevibacterium linens BL2] Length=327 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 137/327 (42%), Positives = 204/327 (63%), Gaps = 3/327 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDA--KAHDLGL 58 M +Y+ RR +NY +L +A+ Y +S P ++P +A I + H Sbjct 1 MGKYVLRRFVNYFILAFIATVTAYITSSAFMDPAARYRGQNPPLSEASIKSILNGHGTNP 60 Query 59 DRPILARYANWVSHA-VRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 D PI+ R W++ + GDF TT+ PV E+ R GVSL+LL++GS+ G + GVV+G Sbjct 61 DVPIIERTWAWLTGIFLHGDFSTTVHNNPVFQEIMTRAGVSLKLLLIGSILGAILGVVLG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGV 177 WGA++QY+ SD+ +T + L+++TPTFV+ +L++ A N +G L ++GE + + Sbjct 121 VWGAVKQYKASDQTVTYASYLIIATPTFVIGVVLMIIATAFNGLIGTTLIRFSGEYTADI 180 Query 178 AGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRA 237 G + D+L H++LP+L L + AA +SRYQR+ MLDVL DFIRTAR+KG TR+ A Sbjct 181 PPGFFPWFTDQLSHMLLPTLALVMMGAATYSRYQRSVMLDVLASDFIRTARSKGRTRKTA 240 Query 238 LLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAIT 297 L+KHG+R ALIPM+T FAY LV G+ +E +F WHGMGE+ + I D N A Sbjct 241 LVKHGVRVALIPMSTYFAYAFGTLVAGSAMLEVVFSWHGMGEFTINSILQSDINAAAGSV 300 Query 298 VFSGAVVLLAGLLSDVIYAALDPRVRV 324 +F + L++ LS+++YAALDPRVR+ Sbjct 301 LFIAVLTLISSTLSEILYAALDPRVRI 327 >gi|257068037|ref|YP_003154292.1| ABC-type dipeptide/oligopeptide/nickel transporter permease [Brachybacterium faecium DSM 4810] gi|256558855|gb|ACU84702.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Brachybacterium faecium DSM 4810] Length=344 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 156/345 (46%), Positives = 210/345 (61%), Gaps = 22/345 (6%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 MT+YL RR ++Y +L ALA+ Y S F P P ++ IDA D G++ Sbjct 1 MTKYLLRRFVSYAILTALATVFAYIAASSFFRPRNRYEGIQPPISESSIDAILSDYGVND 60 Query 61 --PILARYANWVSHAVRG----DFGTTITGQPVGTE-LGR--------------RIGVSL 99 P+L R W+ V G +T + V E LG R GVSL Sbjct 61 KDPVLLRTWEWLERIVTAPLPEKLGQDLTNKWVLPEMLGDPTRWLFFWEQGWMGRAGVSL 120 Query 100 RLLVVGSVFGTVAGVVIGAWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVN 159 RLL++G+V V GV G WGA+RQY+ SD+V++ + +++STPTFV LL++ A ++N Sbjct 121 RLLIIGAVLAAVLGVAAGVWGAVRQYKASDQVISYASYVLISTPTFVGGVLLMILATKLN 180 Query 160 WAVGIQLFDYTGETSPGVAGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVL 219 A+G QL +TG + G+ G W + D L HL+LP++ L L AAG+SRYQR+ MLDVL Sbjct 181 SALGFQLIRFTGAYTAGITG-FWAGIWDWLSHLLLPTIALVLFGAAGYSRYQRSVMLDVL 239 Query 220 GQDFIRTARAKGLTRRRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGE 279 G DFIRTARAKG TR RAL+KHGLR ALIPM+T FAY LV G+ F+E +F W GMG+ Sbjct 240 GSDFIRTARAKGTTRTRALVKHGLRVALIPMSTYFAYSFGTLVAGSAFLEIVFSWSGMGQ 299 Query 280 WMVRGISTQDTNIVAAITVFSGAVVLLAGLLSDVIYAALDPRVRV 324 + ++ + T D N V +FS ++L A LS+V+YAALDPRVRV Sbjct 300 YGIQAVQTSDINAVTGNVLFSAVIILFASTLSEVLYAALDPRVRV 344 >gi|326772213|ref|ZP_08231498.1| peptide ABC transporter, permease protein [Actinomyces viscosus C505] gi|326638346|gb|EGE39247.1| peptide ABC transporter, permease protein [Actinomyces viscosus C505] Length=319 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/328 (46%), Positives = 211/328 (65%), Gaps = 12/328 (3%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M YLARR+ NY VLL +A+ L Y L S + P ++ P I A +++ Sbjct 1 MLPYLARRIANYAVLLFIATSLAYLLASASLDPSALWNRQDPSLNWDAIHANLVKYNISH 60 Query 59 DRPILARYANWVSHAV-RGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 D P+ RY W+ + + D+G T G+ + T +G +I VS+RL+ +G+ G V GV +G Sbjct 61 DLPVWDRYVTWLRNVLFHWDWGRTPKGELINTLIGTKIFVSVRLVFLGAAIGMVGGVALG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGV 177 AW A RQYR SDR ++ ++++++STP V+A LL + A+++N + G Q+F++TGE G Sbjct 121 AWTATRQYRFSDRAISLISMIIISTPAMVIAILLQVLAVQINRSSGFQIFEFTGE-GEGA 179 Query 178 AGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRA 237 G RLQHL+LP+L+++L A +SR+QRN MLD LG D++RTARAKGL +R+A Sbjct 180 LG--------RLQHLLLPTLSMSLGGIASYSRFQRNLMLDTLGADYVRTARAKGLIKRKA 231 Query 238 LLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAIT 297 L +H LRTALIPMAT FA+ +A L TGA E+++GWHGMGE+ + IS D N V A+ Sbjct 232 LTRHALRTALIPMATYFAFALATLFTGAAITERVYGWHGMGEYSISAISGMDINGVTAVV 291 Query 298 VFSGAVVLLAGLLSDVIYAALDPRVRVS 325 FSG L LLSDV A +DPRVRVS Sbjct 292 AFSGLCTLTGALLSDVFVAIVDPRVRVS 319 >gi|314924164|gb|EFS87995.1| ABC transporter, permease protein [Propionibacterium acnes HL001PA1] Length=327 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 143/327 (44%), Positives = 202/327 (62%), Gaps = 6/327 (1%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M +Y+ RRL+NY+VLL +A Y L S A P + Q +P+ I+ +++ Sbjct 1 MLKYVVRRLINYVVLLLIAVSFAYVLASYALDPRNAFDQTNPKLNWTAINQSLTNYNINP 60 Query 59 DRPILARYANWVSHA-VRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 D I RY W+ + ++G T G + + +G RIGVS+RL++ G++ G V GV IG Sbjct 61 DTSIWVRYERWLKMVFLHWNWGWTPHGDAINSLIGTRIGVSVRLVICGTIIGMVGGVAIG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGET-SPG 176 AW A+RQY +DR+++ L LL++STPT V+A LL LGA+R N G Q F + GE S G Sbjct 121 AWSAVRQYSAADRIVSFLCLLLISTPTMVLAVLLQLGAIRFNQVTGTQFFQFIGEVGSHG 180 Query 177 VAGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRR 236 G R+QHL+LP+++L+ + A +SRYQRN MLD LG D++RTARAKGL + R Sbjct 181 NYFGA--EFLSRMQHLLLPTISLSALSLASYSRYQRNLMLDTLGADYVRTARAKGLRKGR 238 Query 237 ALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAI 296 A+ H LR A+IPMAT FA+GVA + GA E+++ W+G+G + V I D N A+ Sbjct 239 AIRHHALRNAIIPMATYFAFGVANIFVGATISEQVYAWNGVGSYSVMSIQQNDINGSVAV 298 Query 297 TVFSGAVVLLAGLLSDVIYAALDPRVR 323 FSG L LLSD++ A +DPRVR Sbjct 299 VAFSGLCTLTGALLSDILIAVIDPRVR 325 >gi|282855188|ref|ZP_06264520.1| ABC transporter, permease protein [Propionibacterium acnes J139] gi|282581776|gb|EFB87161.1| ABC transporter, permease protein [Propionibacterium acnes J139] gi|314965074|gb|EFT09173.1| ABC transporter, permease protein [Propionibacterium acnes HL082PA2] gi|314982272|gb|EFT26365.1| ABC transporter, permease protein [Propionibacterium acnes HL110PA3] gi|315090459|gb|EFT62435.1| ABC transporter, permease protein [Propionibacterium acnes HL110PA4] gi|315093694|gb|EFT65670.1| ABC transporter, permease protein [Propionibacterium acnes HL060PA1] gi|315103987|gb|EFT75963.1| ABC transporter, permease protein [Propionibacterium acnes HL050PA2] Length=327 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 143/327 (44%), Positives = 202/327 (62%), Gaps = 6/327 (1%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M +Y+ RRL+NY+VLL +A Y L S A P + Q +P+ I+ +++ Sbjct 1 MLKYVVRRLINYVVLLFIAVSFAYVLASYALDPRNAFDQTNPKLNWTAINQSLTNYNINP 60 Query 59 DRPILARYANWVSHA-VRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 D I RY W+ + ++G T G + + +G RIGVS+RL++ G++ G V GV IG Sbjct 61 DTSIWVRYERWLKMVFLHWNWGWTPHGDAINSLIGTRIGVSVRLVICGTIIGMVGGVAIG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGET-SPG 176 AW A+RQY +DR+++ L LL++STPT V+A LL LGA+R N G Q F + GE S G Sbjct 121 AWSAVRQYSAADRIVSFLCLLLISTPTMVLAVLLQLGAIRFNQVTGTQFFQFIGEVGSHG 180 Query 177 VAGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRR 236 G R+QHL+LP+++L+ + A +SRYQRN MLD LG D++RTARAKGL + R Sbjct 181 NYFGA--EFLSRMQHLLLPTISLSALSLASYSRYQRNLMLDTLGADYVRTARAKGLRKGR 238 Query 237 ALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAI 296 A+ H LR A+IPMAT FA+GVA + GA E+++ W+G+G + V I D N A+ Sbjct 239 AIRHHALRNAIIPMATYFAFGVANIFVGATISEQVYAWNGVGSYSVMSIQQNDINGSVAV 298 Query 297 TVFSGAVVLLAGLLSDVIYAALDPRVR 323 FSG L LLSD++ A +DPRVR Sbjct 299 VAFSGLCTLTGALLSDILIAVIDPRVR 325 >gi|325067462|ref|ZP_08126135.1| binding-protein-dependent transport systems inner membrane component [Actinomyces oris K20] Length=319 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/328 (46%), Positives = 211/328 (65%), Gaps = 12/328 (3%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M YLARR+ NY VLL +A+ L Y L S + P ++ P I A +++ Sbjct 1 MLPYLARRIANYAVLLFIATSLAYLLASASLDPSALWNRQDPSLNWDAIHANLVKYNISH 60 Query 59 DRPILARYANWVSHAV-RGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 D P+ RY W+ + + D+G T G+ + T +G +I VS+RL+ +G+ G V GV +G Sbjct 61 DLPVWDRYVTWLRNVLFHWDWGRTPKGELINTLIGTKIFVSVRLVFLGAAIGMVGGVALG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGV 177 AW A RQYR SDR ++ ++++++STP V+A LL + A+++N + G Q+F++TGE G Sbjct 121 AWTATRQYRFSDRAISLISMIIISTPAMVIAILLQVLAVQINRSSGFQIFEFTGE-GEGA 179 Query 178 AGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRA 237 G RLQHL+LP+L+++L A +SR+QRN MLD LG D++RTARAKGL +R+A Sbjct 180 LG--------RLQHLLLPTLSMSLGGIASYSRFQRNLMLDTLGADYVRTARAKGLIKRKA 231 Query 238 LLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAIT 297 L +H LRTALIPMAT FA+ +A L TGA E+++GWHGMGE+ + I+ D N V A+ Sbjct 232 LTRHALRTALIPMATYFAFALATLFTGAAITERVYGWHGMGEYSISAIAGMDINGVTAVV 291 Query 298 VFSGAVVLLAGLLSDVIYAALDPRVRVS 325 FSG L LLSDV A +DPRVRVS Sbjct 292 AFSGLCTLTGALLSDVFVAIVDPRVRVS 319 >gi|340360823|ref|ZP_08683288.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Actinomyces sp. oral taxon 448 str. F0400] gi|339883015|gb|EGQ72895.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Actinomyces sp. oral taxon 448 str. F0400] Length=319 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 146/327 (45%), Positives = 205/327 (63%), Gaps = 12/327 (3%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M YLARR+ NY +LL +A+ + Y + S P + PR ++A +++ Sbjct 1 MLPYLARRIANYAILLFIATSMAYLMASATLDPATLWDRGDPRLNWDAVNASLAEYNISH 60 Query 59 DRPILARYANWVSHAV-RGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 D P+ RY W+ V D+G T G + +G +I VS+RL+ +G+ G + GV +G Sbjct 61 DLPVWGRYVTWLKGVVLHWDWGMTPKGASINGMMGAKILVSVRLVFLGAFIGMIGGVALG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGV 177 AW A RQY ++DR+ T L++LV+STP V+A LL + A+++N A G QLF++TG GV Sbjct 121 AWTATRQYSVADRIATLLSMLVISTPVMVLAILLQVAAVQINRATGYQLFEFTG-MGDGV 179 Query 178 AGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRA 237 G +LQHL+LP+L+++L A +SRYQRN MLD LG D++RTARAKGL +R+A Sbjct 180 VG--------QLQHLLLPTLSMSLGGIATYSRYQRNLMLDTLGADYVRTARAKGLVKRKA 231 Query 238 LLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAIT 297 + +H LRTALIPMAT FA+ +A L TGA E+++ WHG+GE+ V IS D N A+ Sbjct 232 VTRHALRTALIPMATYFAFALATLFTGAAVTERVYTWHGIGEYSVNSISQMDINGATAVV 291 Query 298 VFSGAVVLLAGLLSDVIYAALDPRVRV 324 FSG L LLSDV A +DPRVRV Sbjct 292 AFSGLCTLTGALLSDVFVAIVDPRVRV 318 >gi|320531723|ref|ZP_08032659.1| ABC transporter, permease protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136062|gb|EFW28074.1| ABC transporter, permease protein [Actinomyces sp. oral taxon 171 str. F0337] Length=319 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 150/328 (46%), Positives = 210/328 (65%), Gaps = 12/328 (3%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M YLARR+ NY VLL +A+ L Y L S + P ++ P I A +++ Sbjct 1 MLPYLARRIANYAVLLFIATSLAYLLASASLDPSALWNRQDPSLNWDAIHANLVKYNISH 60 Query 59 DRPILARYANWVSHAV-RGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 D P+ RY W+ + V D+G T G+ + T +G +I VS+RL+ +G+ G V GV +G Sbjct 61 DLPVWDRYVTWLRNVVLHWDWGRTPKGELINTLIGTKILVSVRLVFLGAAIGMVGGVALG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGV 177 AW A RQYR SDR ++ ++++++STP V+A LL + A+++N + G Q+ ++TGE G Sbjct 121 AWTATRQYRFSDRAISLISMIIISTPAMVIAILLQVLAVQINRSSGYQILEFTGE-GEGT 179 Query 178 AGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRA 237 G RLQHL+LP+L+++L A +SR+QRN MLD LG D++RTARAKGL +R+A Sbjct 180 LG--------RLQHLLLPTLSMSLGGIASYSRFQRNLMLDTLGADYVRTARAKGLIKRKA 231 Query 238 LLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAIT 297 L +H LRTALIPMAT FA+ +A L TGA E+++GWHGMGE+ + IS D N V A+ Sbjct 232 LTRHALRTALIPMATYFAFALATLFTGAAITERVYGWHGMGEYSISAISGMDINGVTAVV 291 Query 298 VFSGAVVLLAGLLSDVIYAALDPRVRVS 325 FSG L LLSDV A +DPRVRVS Sbjct 292 AFSGLCTLTGALLSDVFVAIVDPRVRVS 319 >gi|327326691|gb|EGE68477.1| peptide ABC transporter, permease protein [Propionibacterium acnes HL103PA1] Length=327 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 142/327 (44%), Positives = 201/327 (62%), Gaps = 6/327 (1%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAK--AHDLGL 58 M +Y+ RRL+NY+VLL +A Y L S A P + Q +P+ I+ +++ Sbjct 1 MLKYVVRRLINYVVLLFIAVSFAYVLASYALDPRNAFDQTNPKLNWTAINQSLTNYNINP 60 Query 59 DRPILARYANWVSHA-VRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 D I RY W+ + ++G T G + + +G RIGVS+RL++ G++ G V GV IG Sbjct 61 DTSIWVRYERWLKMVFLHWNWGWTPHGDAINSLIGTRIGVSVRLVICGTIIGMVGGVAIG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGET-SPG 176 AW A+RQY +DR+++ L LL++STPT V+A LL LGA+R N G Q F + GE S G Sbjct 121 AWSAVRQYSAADRIVSFLCLLLISTPTMVLAVLLQLGAIRFNQVTGTQFFQFIGEVGSHG 180 Query 177 VAGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRR 236 G R+QHL+LP+++L+ + A +SRYQRN MLD LG D++RTARAKGL + R Sbjct 181 NYFGA--EFLSRMQHLLLPTISLSALSLASYSRYQRNLMLDTLGADYVRTARAKGLRKGR 238 Query 237 ALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAI 296 + H LR A+IPMAT FA+GVA + GA E+++ W+G+G + V I D N A+ Sbjct 239 VIRHHALRNAIIPMATYFAFGVANIFVGATISEQVYAWNGVGSYSVMSIQQNDINGSVAV 298 Query 297 TVFSGAVVLLAGLLSDVIYAALDPRVR 323 FSG L LLSD++ A +DPRVR Sbjct 299 VAFSGLCTLTGALLSDILIAVIDPRVR 325 >gi|333918765|ref|YP_004492346.1| oligopeptide ABC transporter permease [Amycolicicoccus subflavus DQS3-9A1] gi|333480986|gb|AEF39546.1| ABC oligopeptide transporter, permease component [Amycolicicoccus subflavus DQS3-9A1] Length=334 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 142/322 (45%), Positives = 203/322 (64%), Gaps = 0/322 (0%) Query 2 TRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDRP 61 ++YLA RL ++L A+F + L S+ F P+ L R P P V++A+A L LD P Sbjct 8 SQYLAGRLAGRVLLCLAATFFAFALASMTFDPMAELQMRQPPPAPGVLEAQAARLALDSP 67 Query 62 ILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWGA 121 I R+ W++ GDFGTT+ G+P+G EL R G S+RL GS+ + GVV+G A Sbjct 68 IPLRFLEWIAGFPSGDFGTTVGGRPIGDELWSRAGTSMRLFFAGSIVAILLGVVVGVRSA 127 Query 122 IRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGGV 181 + SD + L +L+ P FV+ LL L L +N A G Q+ ++GE++ G Sbjct 128 LNSRHASDHLTMFWTLALLAIPVFVLGTLLKLLWLPINEAAGTQILYFSGESTVGANYTG 187 Query 182 WDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLKH 241 W+ + DR++H++LP+L +AL A FSRYQR AML++L +F+RTARAKGL R+A+ H Sbjct 188 WEAVLDRMRHMVLPTLAIALPQIAYFSRYQRAAMLEILNSEFVRTARAKGLRWRQAVRIH 247 Query 242 GLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFSG 301 LR ALIPM +LFA+ + G VF E+IFGWHGMG+W++ GI D IVA +T+F G Sbjct 248 ALRVALIPMVSLFAFSFGLHIVGGVFTERIFGWHGMGDWLLTGIHDHDARIVAMVTLFIG 307 Query 302 AVVLLAGLLSDVIYAALDPRVR 323 V+++AG LSD++ LDPR+R Sbjct 308 VVIVIAGWLSDIVLVMLDPRIR 329 >gi|297571991|ref|YP_003697765.1| binding-protein-dependent transporters inner membrane component [Arcanobacterium haemolyticum DSM 20595] gi|296932338|gb|ADH93146.1| binding-protein-dependent transport systems inner membrane component [Arcanobacterium haemolyticum DSM 20595] Length=335 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 120/264 (46%), Positives = 170/264 (65%), Gaps = 0/264 (0%) Query 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 PIL R+ NWV D+G + G V E+ R+ +SL+L+ +G G + GV +GAW Sbjct 71 PILDRFFNWVGMISHWDWGHSPLGNSVNAEIANRVPISLQLVFLGFFIGIIGGVSLGAWA 130 Query 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAGG 180 A+ QY DR++T +A++++STP V+A L +GA N G Q+F++ G TS G Sbjct 131 AVHQYSKRDRLITIIAMVIISTPAMVIAVFLQIGATYANNFAGYQIFNFIGPTSAVPPTG 190 Query 181 VWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALLK 240 + L DR QHL+LP++++ALA+ A +SR QRN MLD LG D++RTARAKG+ A+ K Sbjct 191 FFPALLDRAQHLLLPTISMALASVASYSRIQRNLMLDTLGADYVRTARAKGVRFGTAIRK 250 Query 241 HGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVFS 300 H LRTALIP+AT FA+G+A L+ GA E+++GW+GMG + V I+ D N AA+ F+ Sbjct 251 HALRTALIPIATYFAFGIATLILGAAITEQVYGWNGMGIYSVGTITGSDINGTAAVVAFA 310 Query 301 GAVVLLAGLLSDVIYAALDPRVRV 324 G L LSDV + +DPRVRV Sbjct 311 GTCTLTGAFLSDVAISLVDPRVRV 334 >gi|302530053|ref|ZP_07282395.1| nickel ABC transporter, permease subunit NikB [Streptomyces sp. AA4] gi|302438948|gb|EFL10764.1| nickel ABC transporter, permease subunit NikB [Streptomyces sp. AA4] Length=326 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/324 (40%), Positives = 193/324 (60%), Gaps = 1/324 (0%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M + RRL + +L L++F+ + + SL+ +PL L+ R+P PP I+ + L LD+ Sbjct 1 MLAFALRRLFVSVPILILSTFVVFVMVSLSANPLTPLIARNPPPPPRTIELERIRLHLDQ 60 Query 61 PILARYANWVSHAVRGDFGTTI-TGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAW 119 PIL RY +W++ + GDFG ++ + +G+E+ R GV+LRL+V+ V + V+IG Sbjct 61 PILERYWHWITGVLHGDFGPSVQSTMNIGSEVFGRFGVTLRLIVLAMVVALILAVLIGVI 120 Query 120 GAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGVAG 179 A RQY D T L LS P+F A +L + +N +VG Q+F G +S +G Sbjct 121 SASRQYSKFDYTATFFGFLFLSMPSFWFALVLKQIGIGINESVGDQVFYTIGSSSVVASG 180 Query 180 GVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRALL 239 G W + GD L HLILP+++LAL + A +SRYQR +ML+VL D++R ARAKGL R Sbjct 181 GFWTQFGDVLGHLILPTISLALTSYAAWSRYQRASMLEVLNSDYVRLARAKGLPRWTVTR 240 Query 240 KHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAITVF 299 KH LR ALIP+ T+ A + ++ GAV E +F W G G +++ I D V A + Sbjct 241 KHALRNALIPLTTVTALDIGSILGGAVVTETVFQWQGAGAFLLDAIKRSDVYAVEAWLLI 300 Query 300 SGAVVLLAGLLSDVIYAALDPRVR 323 + ++L L++D++Y LDPR+R Sbjct 301 AATFIILLNLVADLLYGLLDPRIR 324 >gi|256396879|ref|YP_003118443.1| binding-protein-dependent transporters inner membrane component [Catenulispora acidiphila DSM 44928] gi|256363105|gb|ACU76602.1| binding-protein-dependent transport systems inner membrane component [Catenulispora acidiphila DSM 44928] Length=322 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/328 (41%), Positives = 198/328 (61%), Gaps = 9/328 (2%) Query 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 M + RRLL + +L L++FL + L + PL ++P P A + A+ H LGLD Sbjct 1 MIAFTIRRLLVSIPILILSTFLVFLLVAWGADPLGDFKSKNPPPSAAEVAAREHALGLDH 60 Query 61 PILARYANWVSHAV-RGDFGTTITGQ--PVGTELGRRIGVSLRLLVVGSVFGTVAGVVIG 117 +L +Y NW+ + V GDFG ++ G + ELGRR V+ RL++ + + VV+G Sbjct 61 GLLVQYWNWIKNLVLHGDFGPSVQGSAFDINAELGRRTWVTFRLVICAIIIALILAVVVG 120 Query 118 AWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGALRVNWAVGIQLFDYTGETSPGV 177 A++QY ++D V T + LS P F A LL + A +N ++G T + G Sbjct 121 VITAMKQYSITDYVATLIGFFFLSLPVFWFAILLKIWATDINNSLG------TNIKTLGP 174 Query 178 AGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTRRRA 237 GG W +G +L+LP++TLAL++ A ++R+QR +MLDVL D++R ARAKGLT RR Sbjct 175 PGGQWGGIGSWAGYLVLPTITLALSSYATWARFQRASMLDVLNSDYMRLARAKGLTPRRV 234 Query 238 LLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVAAIT 297 +++HGLRTALIPM T VA ++ G V E+IF W G+G + GI TQDTN V A Sbjct 235 MVRHGLRTALIPMTTQVTLDVAAIMGGTVITERIFQWQGLGTMFINGIQTQDTNTVLAWL 294 Query 298 VFSGAVVLLAGLLSDVIYAALDPRVRVS 325 + S +V++ L++D++YA LDPR+R++ Sbjct 295 LISATLVIVFNLIADLLYAVLDPRIRLA 322 Lambda K H 0.327 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 577149478596 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40