BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1289
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608429|ref|NP_215805.1| hypothetical protein Rv1289 [Mycoba... 430 5e-119
gi|308370682|ref|ZP_07422332.2| hypothetical protein TMCG_00919 ... 424 6e-117
gi|183984094|ref|YP_001852385.1| hypothetical protein MMAR_4123 ... 365 3e-99
gi|240169527|ref|ZP_04748186.1| hypothetical protein MkanA1_0945... 351 4e-95
gi|110833708|ref|YP_692567.1| hypothetical protein ABO_0847 [Alc... 63.5 2e-08
gi|54302873|ref|YP_132866.1| hypothetical protein PBPRB1194 [Pho... 53.9 1e-05
gi|94499083|ref|ZP_01305621.1| hypothetical protein RED65_09854 ... 45.4 0.005
gi|163783523|ref|ZP_02178513.1| hypothetical protein HG1285_1463... 37.0 1.9
gi|242777835|ref|XP_002479114.1| hypothetical protein TSTA_09397... 35.8 3.7
gi|344924974|ref|ZP_08778435.1| hypothetical protein COdytL_1005... 35.8 4.6
>gi|15608429|ref|NP_215805.1| hypothetical protein Rv1289 [Mycobacterium tuberculosis H37Rv]
gi|15840737|ref|NP_335774.1| hypothetical protein MT1327 [Mycobacterium tuberculosis CDC1551]
gi|31792481|ref|NP_854974.1| hypothetical protein Mb1320 [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=210
Score = 430 bits (1106), Expect = 5e-119, Method: Compositional matrix adjust.
Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)
Query 1 MCVSVGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIY 60
MCVSVGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIY
Sbjct 1 MCVSVGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIY 60
Query 61 GVMATPGVDLEKTRFPVGVRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVN 120
GVMATPGVDLEKTRFPVGVRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVN
Sbjct 61 GVMATPGVDLEKTRFPVGVRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVN 120
Query 121 ASAALRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQ 180
ASAALRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQ
Sbjct 121 ASAALRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQ 180
Query 181 DHFREIVNVDRASLVALDFGDLWNGWTPVG 210
DHFREIVNVDRASLVALDFGDLWNGWTPVG
Sbjct 181 DHFREIVNVDRASLVALDFGDLWNGWTPVG 210
>gi|308370682|ref|ZP_07422332.2| hypothetical protein TMCG_00919 [Mycobacterium tuberculosis SUMu003]
gi|308371931|ref|ZP_07426695.2| hypothetical protein TMDG_01167 [Mycobacterium tuberculosis SUMu004]
gi|308373101|ref|ZP_07431002.2| hypothetical protein TMEG_01185 [Mycobacterium tuberculosis SUMu005]
16 more sequence titles
Length=208
Score = 424 bits (1089), Expect = 6e-117, Method: Compositional matrix adjust.
Identities = 207/208 (99%), Positives = 208/208 (100%), Gaps = 0/208 (0%)
Query 3 VSVGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIYGV 62
+SVGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIYGV
Sbjct 1 MSVGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIYGV 60
Query 63 MATPGVDLEKTRFPVGVRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVNAS 122
MATPGVDLEKTRFPVGVRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVNAS
Sbjct 61 MATPGVDLEKTRFPVGVRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVNAS 120
Query 123 AALRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQDH 182
AALRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQDH
Sbjct 121 AALRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQDH 180
Query 183 FREIVNVDRASLVALDFGDLWNGWTPVG 210
FREIVNVDRASLVALDFGDLWNGWTPVG
Sbjct 181 FREIVNVDRASLVALDFGDLWNGWTPVG 208
>gi|183984094|ref|YP_001852385.1| hypothetical protein MMAR_4123 [Mycobacterium marinum M]
gi|183177420|gb|ACC42530.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=208
Score = 365 bits (936), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 169/208 (82%), Positives = 190/208 (92%), Gaps = 0/208 (0%)
Query 3 VSVGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIYGV 62
++VG SV QSL+QWDRK+WDVAMLHACNAVD+T RKRYP+LG GTRFR +RD++DIYGV
Sbjct 1 MTVGASVKQSLEQWDRKMWDVAMLHACNAVDDTSRKRYPSLGAGTRFRRVIRDAVDIYGV 60
Query 63 MATPGVDLEKTRFPVGVRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVNAS 122
MATPGVDLE TRFPV VRSDL P+ RPDIADVLYGIHRWLHGH +ES+ FEVSPYVN S
Sbjct 61 MATPGVDLENTRFPVAVRSDLTPEMRPDIADVLYGIHRWLHGHDEESATGFEVSPYVNGS 120
Query 123 AALRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQDH 182
AALR+A+DGKIQLPK+AILGLLA+AVFAPENKGEVIPPDYQLSW+DHVFF+S WWGWQDH
Sbjct 121 AALRVASDGKIQLPKTAILGLLAIAVFAPENKGEVIPPDYQLSWFDHVFFVSAWWGWQDH 180
Query 183 FREIVNVDRASLVALDFGDLWNGWTPVG 210
FREIVNVDR+SLVALDFG+ W+ W PVG
Sbjct 181 FREIVNVDRSSLVALDFGNSWSDWAPVG 208
>gi|240169527|ref|ZP_04748186.1| hypothetical protein MkanA1_09451 [Mycobacterium kansasii ATCC
12478]
Length=212
Score = 351 bits (900), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 169/207 (82%), Positives = 185/207 (90%), Gaps = 1/207 (0%)
Query 3 VSVGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIYGV 62
++VGESVAQSLQQWDRKLWDVAMLHACNAVD T RKRYP LGVGTRFR +RDSLDI+GV
Sbjct 1 MTVGESVAQSLQQWDRKLWDVAMLHACNAVDGTARKRYPALGVGTRFRRVIRDSLDIFGV 60
Query 63 MATPGVDLEKTRFPVGVRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVNAS 122
MATPGV+LE+TRFPV VRSDL PDKRPDIADVL+GIHRWLHGH DE FEV+PYVN+
Sbjct 61 MATPGVNLEETRFPVAVRSDL-PDKRPDIADVLFGIHRWLHGHIDEGPDGFEVTPYVNSG 119
Query 123 AALRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQDH 182
A LR ANDGKIQL K AILG+LAVAVFAPENKGE IP DYQLSW+DHVF+ISVWWGWQDH
Sbjct 120 AVLRTANDGKIQLTKFAILGMLAVAVFAPENKGESIPADYQLSWFDHVFYISVWWGWQDH 179
Query 183 FREIVNVDRASLVALDFGDLWNGWTPV 209
FREIVNVD +SLV L+FGD+W+ WTPV
Sbjct 180 FREIVNVDPSSLVTLNFGDMWDRWTPV 206
>gi|110833708|ref|YP_692567.1| hypothetical protein ABO_0847 [Alcanivorax borkumensis SK2]
gi|110646819|emb|CAL16295.1| hypothetical protein ABO_0847 [Alcanivorax borkumensis SK2]
Length=163
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/167 (28%), Positives = 72/167 (44%), Gaps = 19/167 (11%)
Query 19 KLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIYGVMATPGVDLEKTRFPVG 78
K ++ A++H A+D+T +KR P VG R R L D L+I +AT + F V
Sbjct 3 KDFEAALVHYFPALDKTAKKRRPAAKVGERIRAFLDDELEIISDIATKNI------FIVN 56
Query 79 VRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVNASAALRIANDGKIQLPKS 138
P + +Y R H E E+ P +N + + LP S
Sbjct 57 CNGVSFP-------EAIYKFGRTSIAH------EGELDPRLNFNNNSGMEIGDTWNLPPS 103
Query 139 AILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQDHFRE 185
I GL + APEN E DY+++ ++ F ++ WG + R+
Sbjct 104 FITGLSIAVILAPENTAERFQKDYEVAIHEERFSVNALWGQRQLIRD 150
>gi|54302873|ref|YP_132866.1| hypothetical protein PBPRB1194 [Photobacterium profundum SS9]
gi|46916297|emb|CAG23066.1| hypothetical protein PBPRB1194 [Photobacterium profundum SS9]
Length=251
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/190 (27%), Positives = 75/190 (40%), Gaps = 22/190 (11%)
Query 5 VGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLGVGTRFRTALRDSLDIYGVMA 64
V V QS++ ++ A+++ A+D+T ++R P GVG R + L D + +A
Sbjct 79 VSRRVLQSIKHLQTDDFEGALVNLFPAIDQTAKRRRPKDGVGKRIKAFLEDEEKLISSIA 138
Query 65 TPGVDLEKTRFPVGVRSDLLPDKRPDIADVLYGIHRWLHGHADESSVEFEVSPYVNASAA 124
T D L D I D LY R H E E N + +
Sbjct 139 T---------------GDCLCDG-ISITDALYKFGRTSIAHEGELDPRLE----FNLNGS 178
Query 125 LRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHVFFISVWWGWQDHFR 184
++I +D K LP I G+ A + A EN+ E + + F I WG +
Sbjct 179 IQIGSD-KWNLPIGYITGMCAAVIVAEENEAENFDDQLAIPLFGKQFPIESLWGNSHQIK 237
Query 185 -EIVNVDRAS 193
I N R S
Sbjct 238 THICNEFRNS 247
>gi|94499083|ref|ZP_01305621.1| hypothetical protein RED65_09854 [Oceanobacter sp. RED65]
gi|94428715|gb|EAT13687.1| hypothetical protein RED65_09854 [Oceanobacter sp. RED65]
Length=184
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/199 (22%), Positives = 86/199 (44%), Gaps = 27/199 (13%)
Query 4 SVGESVAQSLQQWDRKLWDVAMLHACNAVDETGRKRYPTLG-VGTRFRTALRDSLDIYGV 62
+VG + +++Q+ + A++ A+D + ++++P VG R++ +R+ +
Sbjct 3 AVGCRLDEAIQKISAGDLENALIQVSIAIDVSSKRKWPKQKKVGERYKNFIREHESLIYF 62
Query 63 MATPGVDLEKTRFPVGVRSDLLP--------DKRPDIADVLYGIHRWLHGHADESSVEFE 114
M+ +G++ D P R DIA V Y R H E S
Sbjct 63 MS------------LGIKGDTKPLVSFPNPNGDRYDIAHVYYKAVRNGLLHDGEISENLS 110
Query 115 VSPYVNASAALRIANDGKIQLPKSAILGLLAVAVFAPENKGEVIPPDYQLSWYDHV-FFI 173
V + I DGKI + K ++ L+ + P N E + +Y +++ + + +
Sbjct 111 V-----VDENVLIYKDGKITISKMILMALMLAVICEPVNCNERLSKNYTVTFTNDIDINL 165
Query 174 SVWWGWQDHFREIVNVDRA 192
+ +WG +D + + D+A
Sbjct 166 NDFWGKRDLLYQKIGHDKA 184
>gi|163783523|ref|ZP_02178513.1| hypothetical protein HG1285_14634 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881143|gb|EDP74657.1| hypothetical protein HG1285_14634 [Hydrogenivirga sp. 128-5-R1-1]
Length=248
Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (31%), Positives = 33/73 (46%), Gaps = 0/73 (0%)
Query 36 GRKRYPTLGVGTRFRTALRDSLDIYGVMATPGVDLEKTRFPVGVRSDLLPDKRPDIADVL 95
GR Y + G R R R ++ V + PG+DL ++ + L+ +R D A L
Sbjct 112 GRISYDKVKYGKRLRELKRKAVSGKPVFSKPGIDLTESEKESVLMQKLIALQRGDSAKTL 171
Query 96 YGIHRWLHGHADE 108
Y + L H DE
Sbjct 172 YDVALILEEHGDE 184
>gi|242777835|ref|XP_002479114.1| hypothetical protein TSTA_093970 [Talaromyces stipitatus ATCC
10500]
gi|218722733|gb|EED22151.1| hypothetical protein TSTA_093970 [Talaromyces stipitatus ATCC
10500]
Length=367
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (47%), Gaps = 9/84 (10%)
Query 77 VGVRSDLLPDKRPDIADVLYGIHRWLHGHADES---SVEFEVSPYVNASAALRIANDGKI 133
+ S L ++ + D+L+G ++WL H E+ S ++E S AL +N+ +
Sbjct 136 IFYHSQALLSEKATVNDILFGFYKWLDDHPSETLFLSFQYE------GSTALHASNNAAV 189
Query 134 QLPKSAILGLLAVAVFAPENKGEV 157
QL L + A + + K E+
Sbjct 190 QLQLYEALTMPAARAYFVQTKDEL 213
>gi|344924974|ref|ZP_08778435.1| hypothetical protein COdytL_10056 [Candidatus Odyssella thessalonicensis
L13]
Length=291
Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/49 (41%), Positives = 26/49 (54%), Gaps = 4/49 (8%)
Query 15 QWDRKLWDVAMLHACNAVDETGRKR-YPTLGVGTRFRTALRDSLDIYGV 62
W + D LH N VD TG+ YPT G RF A+RD+ D+Y +
Sbjct 227 NWKSSICD---LHVDNKVDGTGKYCCYPTRGFNRRFEGAIRDAGDLYNL 272
Lambda K H
0.322 0.138 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 245963417238
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40