BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1290A
Length=104
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840739|ref|NP_335776.1| hypothetical protein MT1329 [Mycoba... 204 5e-51
gi|31792483|ref|NP_854976.1| hypothetical protein Mb1322 [Mycoba... 203 7e-51
gi|340626306|ref|YP_004744758.1| hypothetical protein MCAN_13071... 152 2e-35
gi|254550297|ref|ZP_05140744.1| hypothetical protein Mtube_07534... 103 9e-21
gi|294993158|ref|ZP_06798849.1| hypothetical protein Mtub2_01273... 101 3e-20
gi|167969615|ref|ZP_02551892.1| hypothetical protein MtubH3_1697... 99.4 2e-19
gi|162951005|gb|ABY21541.1| AngAIV [Streptomyces eurythermus] 35.0 3.3
>gi|15840739|ref|NP_335776.1| hypothetical protein MT1329 [Mycobacterium tuberculosis CDC1551]
gi|13880930|gb|AAK45590.1| hypothetical protein MT1329 [Mycobacterium tuberculosis CDC1551]
Length=122
Score = 204 bits (518), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 1 VLALHGLSEGVSGSGGSGGRWGAGEVLEGARIGVIADGVSCFPTKADCRRIRGVPVFDGY 60
VLALHGLSEGVSGSGGSGGRWGAGEVLEGARIGVIADGVSCFPTKADCRRIRGVPVFDGY
Sbjct 19 VLALHGLSEGVSGSGGSGGRWGAGEVLEGARIGVIADGVSCFPTKADCRRIRGVPVFDGY 78
Query 61 TRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 104
TRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG
Sbjct 79 TRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 122
>gi|31792483|ref|NP_854976.1| hypothetical protein Mb1322 [Mycobacterium bovis AF2122/97]
gi|57116846|ref|YP_177642.1| hypothetical protein Rv1290A [Mycobacterium tuberculosis H37Rv]
gi|121637219|ref|YP_977442.1| hypothetical protein BCG_1350 [Mycobacterium bovis BCG str. Pasteur
1173P2]
71 more sequence titles
Length=104
Score = 203 bits (516), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 103/104 (99%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 1 VLALHGLSEGVSGSGGSGGRWGAGEVLEGARIGVIADGVSCFPTKADCRRIRGVPVFDGY 60
+LALHGLSEGVSGSGGSGGRWGAGEVLEGARIGVIADGVSCFPTKADCRRIRGVPVFDGY
Sbjct 1 MLALHGLSEGVSGSGGSGGRWGAGEVLEGARIGVIADGVSCFPTKADCRRIRGVPVFDGY 60
Query 61 TRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 104
TRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG
Sbjct 61 TRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 104
>gi|340626306|ref|YP_004744758.1| hypothetical protein MCAN_13071 [Mycobacterium canettii CIPT
140010059]
gi|340004496|emb|CCC43639.1| hypothetical protein MCAN_13071 [Mycobacterium canettii CIPT
140010059]
Length=104
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/104 (97%), Positives = 101/104 (98%), Gaps = 0/104 (0%)
Query 1 VLALHGLSEGVSGSGGSGGRWGAGEVLEGARIGVIADGVSCFPTKADCRRIRGVPVFDGY 60
+LALHGLSEGVSGSGGSGGRWGAGEVLEGARIGVIADGV FPTKADCRRIRGVPVFDG
Sbjct 1 MLALHGLSEGVSGSGGSGGRWGAGEVLEGARIGVIADGVLGFPTKADCRRIRGVPVFDGD 60
Query 61 TRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 104
TRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG
Sbjct 61 TRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 104
>gi|254550297|ref|ZP_05140744.1| hypothetical protein Mtube_07534 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=51
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/51 (99%), Positives = 51/51 (100%), Gaps = 0/51 (0%)
Query 54 VPVFDGYTRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 104
+PVFDGYTRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG
Sbjct 1 MPVFDGYTRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 51
>gi|294993158|ref|ZP_06798849.1| hypothetical protein Mtub2_01273 [Mycobacterium tuberculosis
210]
Length=53
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/50 (98%), Positives = 49/50 (98%), Gaps = 0/50 (0%)
Query 55 PVFDGYTRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 104
PVFDGYTRMVARLMGSL VLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG
Sbjct 4 PVFDGYTRMVARLMGSLTVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 53
>gi|167969615|ref|ZP_02551892.1| hypothetical protein MtubH3_16976 [Mycobacterium tuberculosis
H37Ra]
Length=49
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/49 (98%), Positives = 49/49 (100%), Gaps = 0/49 (0%)
Query 56 VFDGYTRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 104
+FDGYTRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG
Sbjct 1 MFDGYTRMVARLMGSLAVLRSVSIPKGYRDFGFGSLRAVAPKNCPDVSG 49
>gi|162951005|gb|ABY21541.1| AngAIV [Streptomyces eurythermus]
Length=1576
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/84 (35%), Positives = 43/84 (52%), Gaps = 8/84 (9%)
Query 11 VSGSGGSGGRWGAGEVLEGARIGVIADGVSCFPTKADCRRIRGVPVFDGYTRMVARLMGS 70
++G+GG+G R+G GE G + G +A +C P + R + D R VA ++G
Sbjct 1376 LAGTGGAGERYGDGEESTGDQ-GFLARYTACGPVE------RREMLLDLVRRQVAAVLGH 1428
Query 71 LAVLRSVSIPKGYRDFGFGSLRAV 94
A V + +RD GF SL AV
Sbjct 1429 -AGPEEVPADQAFRDLGFSSLTAV 1451
Lambda K H
0.322 0.142 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127350764394
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40