BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1297 Length=602 Score E Sequences producing significant alignments: (Bits) Value gi|15608437|ref|NP_215813.1| transcription termination factor Rh... 1207 0.0 gi|289442736|ref|ZP_06432480.1| transcription termination factor... 1202 0.0 gi|308375429|ref|ZP_07443855.2| transcription termination factor... 1133 0.0 gi|289749851|ref|ZP_06509229.1| transcription termination factor... 1113 0.0 gi|289573960|ref|ZP_06454187.1| transcription termination factor... 1039 0.0 gi|221230040|ref|YP_002503456.1| transcription termination facto... 899 0.0 gi|15827563|ref|NP_301826.1| transcription termination factor Rh... 898 0.0 gi|41408562|ref|NP_961398.1| transcription termination factor Rh... 882 0.0 gi|118464927|ref|YP_880752.1| transcription termination factor R... 860 0.0 gi|342858042|ref|ZP_08714698.1| transcription termination factor... 853 0.0 gi|240169517|ref|ZP_04748176.1| transcription termination factor... 852 0.0 gi|183984071|ref|YP_001852362.1| transcription termination facto... 845 0.0 gi|118619171|ref|YP_907503.1| transcription termination factor R... 839 0.0 gi|254821296|ref|ZP_05226297.1| transcription termination factor... 831 0.0 gi|333989936|ref|YP_004522550.1| transcription termination facto... 811 0.0 gi|296170238|ref|ZP_06851831.1| transcription termination factor... 768 0.0 gi|343928055|ref|ZP_08767520.1| transcription termination factor... 756 0.0 gi|118471197|ref|YP_889206.1| transcription termination factor R... 755 0.0 gi|120405299|ref|YP_955128.1| transcription termination factor R... 754 0.0 gi|108800857|ref|YP_641054.1| transcription termination factor R... 753 0.0 gi|54023019|ref|YP_117261.1| transcription termination factor Rh... 753 0.0 gi|226360609|ref|YP_002778387.1| transcription termination facto... 735 0.0 gi|111018486|ref|YP_701458.1| transcription termination factor R... 734 0.0 gi|315443354|ref|YP_004076233.1| transcription termination facto... 732 0.0 gi|145222889|ref|YP_001133567.1| transcription termination facto... 732 0.0 gi|169628529|ref|YP_001702178.1| transcription termination facto... 713 0.0 gi|262201844|ref|YP_003273052.1| transcription termination facto... 712 0.0 gi|333920931|ref|YP_004494512.1| transcription termination facto... 707 0.0 gi|229490044|ref|ZP_04383897.1| transcription termination factor... 704 0.0 gi|226307406|ref|YP_002767366.1| transcription termination facto... 704 0.0 gi|312139164|ref|YP_004006500.1| transcription termination facto... 702 0.0 gi|325673531|ref|ZP_08153222.1| transcription termination factor... 702 0.0 gi|326382079|ref|ZP_08203772.1| transcription termination factor... 692 0.0 gi|296138960|ref|YP_003646203.1| transcription termination facto... 681 0.0 gi|317506164|ref|ZP_07963985.1| transcription termination factor... 677 0.0 gi|257056966|ref|YP_003134798.1| transcription termination facto... 672 0.0 gi|296393114|ref|YP_003657998.1| transcription termination facto... 669 0.0 gi|319948469|ref|ZP_08022605.1| transcription termination factor... 662 0.0 gi|300789611|ref|YP_003769902.1| transcription termination facto... 654 0.0 gi|291007812|ref|ZP_06565785.1| transcription termination factor... 648 0.0 gi|134102731|ref|YP_001108392.1| transcription termination facto... 647 0.0 gi|331695517|ref|YP_004331756.1| transcription termination facto... 640 0.0 gi|330469862|ref|YP_004407605.1| transcription termination facto... 640 0.0 gi|325002818|ref|ZP_08123930.1| transcription termination factor... 639 0.0 gi|256380146|ref|YP_003103806.1| transcription termination facto... 639 0.0 gi|336179681|ref|YP_004585056.1| transcription termination facto... 639 0.0 gi|213964453|ref|ZP_03392653.1| transcription termination factor... 631 9e-179 gi|237785869|ref|YP_002906574.1| transcription termination facto... 631 1e-178 gi|258652309|ref|YP_003201465.1| transcription termination facto... 630 1e-178 gi|172040384|ref|YP_001800098.1| transcription termination facto... 625 7e-177 >gi|15608437|ref|NP_215813.1| transcription termination factor Rho [Mycobacterium tuberculosis H37Rv] gi|15840747|ref|NP_335784.1| transcription termination factor Rho [Mycobacterium tuberculosis CDC1551] gi|31792490|ref|NP_854983.1| transcription termination factor Rho [Mycobacterium bovis AF2122/97] 70 more sequence titles Length=602 Score = 1207 bits (3122), Expect = 0.0, Method: Compositional matrix adjust. Identities = 601/602 (99%), Positives = 602/602 (100%), Gaps = 0/602 (0%) Query 1 VTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 +TDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM Sbjct 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV Sbjct 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 Query 121 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ 180 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ Sbjct 121 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ 180 Query 181 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR 240 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR Sbjct 181 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR 240 Query 241 TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG 300 TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG Sbjct 241 TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG 300 Query 301 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT 360 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT Sbjct 301 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT 360 Query 361 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 420 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL Sbjct 361 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 420 Query 421 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 480 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR Sbjct 421 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 480 Query 481 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 540 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT Sbjct 481 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 540 Query 541 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD Sbjct 541 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 Query 601 SD 602 SD Sbjct 601 SD 602 >gi|289442736|ref|ZP_06432480.1| transcription termination factor Rho [Mycobacterium tuberculosis T46] gi|289569308|ref|ZP_06449535.1| transcription termination factor rho [Mycobacterium tuberculosis T17] gi|289415655|gb|EFD12895.1| transcription termination factor Rho [Mycobacterium tuberculosis T46] gi|289543062|gb|EFD46710.1| transcription termination factor rho [Mycobacterium tuberculosis T17] Length=602 Score = 1202 bits (3111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/602 (99%), Positives = 601/602 (99%), Gaps = 0/602 (0%) Query 1 VTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 +TDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM Sbjct 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV Sbjct 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 Query 121 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ 180 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ Sbjct 121 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ 180 Query 181 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR 240 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR Sbjct 181 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR 240 Query 241 TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG 300 TSGYLPGPHDVYVSMNMVRKNGMR GDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG Sbjct 241 TSGYLPGPHDVYVSMNMVRKNGMRGGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG 300 Query 301 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT 360 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT Sbjct 301 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT 360 Query 361 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 420 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL Sbjct 361 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 420 Query 421 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 480 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR Sbjct 421 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 480 Query 481 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 540 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT Sbjct 481 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 540 Query 541 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD Sbjct 541 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 Query 601 SD 602 SD Sbjct 601 SD 602 >gi|308375429|ref|ZP_07443855.2| transcription termination factor rho [Mycobacterium tuberculosis SUMu007] gi|308346426|gb|EFP35277.1| transcription termination factor rho [Mycobacterium tuberculosis SUMu007] Length=563 Score = 1133 bits (2931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/563 (100%), Positives = 563/563 (100%), Gaps = 0/563 (0%) Query 40 MVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSE 99 MVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSE Sbjct 1 MVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSE 60 Query 100 APATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKT 159 APATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKT Sbjct 61 APATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKT 120 Query 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE Sbjct 121 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 180 Query 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG Sbjct 181 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 240 Query 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL Sbjct 241 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 300 Query 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK Sbjct 301 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 360 Query 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct 361 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 420 Query 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct 421 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 480 Query 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct 481 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 540 Query 580 KTKNNYEFLVQVSKTTPGSMDSD 602 KTKNNYEFLVQVSKTTPGSMDSD Sbjct 541 KTKNNYEFLVQVSKTTPGSMDSD 563 >gi|289749851|ref|ZP_06509229.1| transcription termination factor rho [Mycobacterium tuberculosis T92] gi|289690438|gb|EFD57867.1| transcription termination factor rho [Mycobacterium tuberculosis T92] Length=602 Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/602 (98%), Positives = 590/602 (99%), Gaps = 0/602 (0%) Query 1 VTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 +TDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM Sbjct 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV Sbjct 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 Query 121 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ 180 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ Sbjct 121 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ 180 Query 181 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR 240 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR Sbjct 181 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR 240 Query 241 TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG 300 TS YLPGPHDVYVSMNMVRKNGMR GDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG Sbjct 241 TSSYLPGPHDVYVSMNMVRKNGMRGGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG 300 Query 301 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT 360 SVEDAKKRPEFGKLTPLYPN LRLETSTERLTTRVIDLI+PIGK A IVS + KT Sbjct 301 SVEDAKKRPEFGKLTPLYPNSGLRLETSTERLTTRVIDLILPIGKVNAAFIVSAVQRVKT 360 Query 361 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 420 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL Sbjct 361 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 420 Query 421 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 480 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR Sbjct 421 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 480 Query 481 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 540 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT Sbjct 481 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 540 Query 541 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD Sbjct 541 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 Query 601 SD 602 SD Sbjct 601 SD 602 >gi|289573960|ref|ZP_06454187.1| transcription termination factor Rho [Mycobacterium tuberculosis K85] gi|289538391|gb|EFD42969.1| transcription termination factor Rho [Mycobacterium tuberculosis K85] Length=557 Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/602 (93%), Positives = 557/602 (93%), Gaps = 45/602 (7%) Query 1 VTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 +TDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM Sbjct 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQID Sbjct 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQID------ 114 Query 121 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ 180 EERGTDAGGDQGGDQQASGGQ Sbjct 115 ---------------------------------------EERGTDAGGDQGGDQQASGGQ 135 Query 181 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR 240 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR Sbjct 136 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR 195 Query 241 TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG 300 TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG Sbjct 196 TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG 255 Query 301 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT 360 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT Sbjct 256 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT 315 Query 361 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 420 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL Sbjct 316 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 375 Query 421 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 480 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR Sbjct 376 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 435 Query 481 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 540 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT Sbjct 436 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 495 Query 541 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD Sbjct 496 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 555 Query 601 SD 602 SD Sbjct 556 SD 557 >gi|221230040|ref|YP_002503456.1| transcription termination factor Rho [Mycobacterium leprae Br4923] gi|219933147|emb|CAR71227.1| transcription termination factor Rho [Mycobacterium leprae Br4923] Length=610 Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/616 (81%), Positives = 523/616 (85%), Gaps = 20/616 (3%) Query 1 VTDTDLITAGESTD-GKPSDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 +T+TDLIT GE+TD + ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct 1 MTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 Query 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ + Sbjct 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNY-----AI 115 Query 117 SQQVRPERRSATREAGPSGSGERA--------GTAADDTDNRQGGQQDAKTEERGTDAGG 168 + R ERR A+REA + A GTA DDT QGGQ D KTEERG D G Sbjct 116 VEVSRRERRGASREADVTAGTSTAEATESDCQGTADDDTRTLQGGQSDTKTEERGPDVGN 175 Query 169 DQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG--AEAELREDDVVQPV 226 DQG +QQ+S Q RGD+DGE RQGRRGRRFRDR RR G AEAELREDDVVQPV Sbjct 176 DQGVEQQSSS-LQPRGDDDGEGRQGRRGRRFRDRDRRRRGERSGDGAEAELREDDVVQPV 234 Query 227 AGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQ 286 AGILDVLDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQ Sbjct 235 AGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQ 294 Query 287 KFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKG 346 KFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKG Sbjct 295 KFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKG 354 Query 347 QRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST 406 QRALIVSPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIAST Sbjct 355 QRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIAST 414 Query 407 FDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDS 466 FDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDS Sbjct 415 FDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDS 474 Query 467 TALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAE 526 TALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAE Sbjct 475 TALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAE 534 Query 527 RRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYE 586 RRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYE Sbjct 535 RRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYE 594 Query 587 FLVQVSKTTPGSMDSD 602 FLVQVSKTTPGSMD D Sbjct 595 FLVQVSKTTPGSMDDD 610 >gi|15827563|ref|NP_301826.1| transcription termination factor Rho [Mycobacterium leprae TN] gi|1172928|sp|P45835.1|RHO_MYCLE RecName: Full=Transcription termination factor Rho; AltName: Full=ATP-dependent helicase Rho gi|699332|gb|AAA63093.1| rho [Mycobacterium leprae] gi|13093113|emb|CAC31513.1| transcription termination factor Rho [Mycobacterium leprae] Length=610 Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/616 (81%), Positives = 523/616 (85%), Gaps = 20/616 (3%) Query 1 VTDTDLITAGESTD-GKPSDAAATDPPDLNADEPA---GSLATMVLPELRALANRAGVKG 56 +T+TDLIT GE+TD + ++A TD PD+ A GSL+TMVLPELRALAN+AGVKG Sbjct 1 MTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 Query 57 TSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ 116 TSGMRK+ELIAAIEE R QANG D +++H S+EA A Q EQ + Sbjct 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQEEQNY-----AI 115 Query 117 SQQVRPERRSATREAGPSGSGERA--------GTAADDTDNRQGGQQDAKTEERGTDAGG 168 + R ERR A+REA + A GTA DDT QGGQ D KTEERG D G Sbjct 116 VEVSRRERRGASREADVTAGTSTAEATESDCQGTADDDTRTLQGGQSDTKTEERGPDVGN 175 Query 169 DQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDG--AEAELREDDVVQPV 226 DQG +QQ+S Q RGD+DGE RQGRRGRRFRDR RR G AEAELR+DDVVQPV Sbjct 176 DQGVEQQSSS-LQPRGDDDGEGRQGRRGRRFRDRDRRRRGERSGDGAEAELRQDDVVQPV 234 Query 227 AGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQ 286 AGILDVLDNYAFVRTSGYL GPHDVYVSM+MVRKNG+RRGDAVTGAVRVP+EGEQ +QRQ Sbjct 235 AGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQRQ 294 Query 287 KFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKG 346 KFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKG Sbjct 295 KFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKG 354 Query 347 QRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST 406 QRALIVSPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEVTDMQRSVKGEVIAST Sbjct 355 QRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIAST 414 Query 407 FDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDS 466 FDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDS Sbjct 415 FDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDS 474 Query 467 TALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAE 526 TALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTGNAELKLDRKIAE Sbjct 475 TALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLDRKIAE 534 Query 527 RRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYE 586 RRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYE Sbjct 535 RRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYE 594 Query 587 FLVQVSKTTPGSMDSD 602 FLVQVSKTTPGSMD D Sbjct 595 FLVQVSKTTPGSMDDD 610 >gi|41408562|ref|NP_961398.1| transcription termination factor Rho [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396920|gb|AAS04781.1| Rho [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460912|gb|EGO39795.1| transcription termination factor Rho [Mycobacterium avium subsp. paratuberculosis S397] Length=620 Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/622 (79%), Positives = 528/622 (85%), Gaps = 22/622 (3%) Query 1 VTDTDLITAGESTDG-KPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSG 59 +TDTDL TAGE+TD + S A TD PD P G+L TMVLPELRALAN+ GVKGTSG Sbjct 1 MTDTDLFTAGENTDANQLSTAVTTDTPDAKTHAPVGALTTMVLPELRALANQVGVKGTSG 60 Query 60 MRKNELIAAIEEIRRQANGA----------PAVDR---SAQEHDKGDRPPSSEAPATQGE 106 MRKNELIAAI+E+R QANGA PA D A++ P + +A G Sbjct 61 MRKNELIAAIKEVRGQANGAAPAEQANGAEPAEDSGKPDAKDAKDDTTPDTKDANDHTGA 120 Query 107 QT------PTEQIDSQSQQVRPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTE 160 Q+ P+EQ + ++ R ERRSA+R+AG +G G + A +TD R+ +QD++ + Sbjct 121 QSAAEAPAPSEQNGATAEAPRRERRSASRDAGAAGRG--SDDADRETDGREQSKQDSREQ 178 Query 161 ERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRED 220 + DQ G + D+DGE RQGRRGRRFRDRRRRGERSG+G +AELRED Sbjct 179 SKQDGGDQDQQSSGGQQGRGSNQQDDDGEGRQGRRGRRFRDRRRRGERSGEGGDAELRED 238 Query 221 DVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGE 280 DVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVPK+GE Sbjct 239 DVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPKDGE 298 Query 281 QPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLI 340 QPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLI Sbjct 299 QPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLI 358 Query 341 MPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKG 400 MPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDMQRSVKG Sbjct 359 MPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKG 418 Query 401 EVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRIL 460 EVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRIL Sbjct 419 EVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRIL 478 Query 461 SGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKL 520 SGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKL Sbjct 479 SGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKL 538 Query 521 DRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRK 580 DRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRK Sbjct 539 DRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRK 598 Query 581 TKNNYEFLVQVSKTTPGSMDSD 602 TKNNYEFLVQVSKTTPG+MD+D Sbjct 599 TKNNYEFLVQVSKTTPGAMDND 620 >gi|118464927|ref|YP_880752.1| transcription termination factor Rho [Mycobacterium avium 104] gi|254774336|ref|ZP_05215852.1| transcription termination factor Rho [Mycobacterium avium subsp. avium ATCC 25291] gi|118166214|gb|ABK67111.1| transcription termination factor Rho [Mycobacterium avium 104] Length=596 Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/596 (80%), Positives = 509/596 (86%), Gaps = 18/596 (3%) Query 23 TDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGA--- 79 TD PD P G+L TMVLPELRALAN+ GVKGTSGMRKNELIAAI+E+R QANGA Sbjct 3 TDTPDAKTHAPVGALTTMVLPELRALANQVGVKGTSGMRKNELIAAIKEVRGQANGAAPA 62 Query 80 -------PAVDR---SAQEHDKGDRPPSSEAPATQGEQTPTE---QIDSQSQQVRPERRS 126 PA D A++ P + +A G Q+ E Q + ++ R ERRS Sbjct 63 EQANGAEPAEDSGKPDAKDAKDDTTPDTKDANDHTGAQSAAEAPAQNGATAEAPRRERRS 122 Query 127 ATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQQARGDE 186 A+R+AG +G G A +TD R+ +QD++ + + DQ G + D+ Sbjct 123 ASRDAGAAGRGN--DDADRETDGREQNKQDSREQSKQDGGDQDQQSSGGQQGRGSNQQDD 180 Query 187 DGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVRTSGYLP 246 DGE RQGRRGRRFRDRRRRGERSG+G +AELREDDVVQPVAGILDVLDNYAFVRTSGYL Sbjct 181 DGEGRQGRRGRRFRDRRRRGERSGEGGDAELREDDVVQPVAGILDVLDNYAFVRTSGYLA 240 Query 247 GPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAK 306 GPHDVYVSMNMVRKNG+RRGDAVTGAVRVPK+GEQPNQRQKFNPLVRLDS+NGGSVEDAK Sbjct 241 GPHDVYVSMNMVRKNGLRRGDAVTGAVRVPKDGEQPNQRQKFNPLVRLDSVNGGSVEDAK 300 Query 307 KRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDI 366 KRPEFGKLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDI Sbjct 301 KRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDI 360 Query 367 ANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAK 426 ANAIT+NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAK Sbjct 361 ANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAK 420 Query 427 RLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGG 486 RLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGG Sbjct 421 RLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGG 480 Query 487 SLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELL 546 SLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELL Sbjct 481 SLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELL 540 Query 547 LSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 LSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPG+MD+D Sbjct 541 LSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGAMDND 596 >gi|342858042|ref|ZP_08714698.1| transcription termination factor Rho [Mycobacterium colombiense CECT 3035] gi|342135375|gb|EGT88541.1| transcription termination factor Rho [Mycobacterium colombiense CECT 3035] Length=577 Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/588 (82%), Positives = 513/588 (88%), Gaps = 36/588 (6%) Query 40 MVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPP--- 96 MVLPELRALAN+ GVKGTSGMRKNELIAAI+E+R QANGAPA + + D G +P Sbjct 1 MVLPELRALANQVGVKGTSGMRKNELIAAIKEVRGQANGAPA-NGTKPAEDSG-KPDNKD 58 Query 97 -------SSEAPATQGEQTPTEQIDSQSQQVRPERRSATREAGPSG----------SGER 139 S++APA +G+Q T ++ R ERR A+REAG S SG R Sbjct 59 DDKTDTNSADAPAAKGDQNGT------TEAPRRERRGASREAGSSARGNDEADRESSGSR 112 Query 140 AGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQQARG-----DEDGEARQGR 194 G A ++D R+ +QD + ++RG D GGDQ +Q SGGQQ RG D+DGE RQGR Sbjct 113 EGAAPGESDRREKAKQDNQNDDRGQDGGGDQ---EQNSGGQQNRGGSNQQDDDGEGRQGR 169 Query 195 RGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVS 254 RGRRFRDRRRRGERSG+G + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVS Sbjct 170 RGRRFRDRRRRGERSGEGGDTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVS 229 Query 255 MNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKL 314 MNMVRKNG+RRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDS+NGGSVEDAKKRP+F KL Sbjct 230 MNMVRKNGLRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPDFSKL 289 Query 315 TPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNN 374 TPLYPNQRLRLET+++RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNN Sbjct 290 TPLYPNQRLRLETTSDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNN 349 Query 375 PECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKD 434 PECHLMVVLVDERPEEVTDM RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKD Sbjct 350 PECHLMVVLVDERPEEVTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKD 409 Query 435 VVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATA 494 VVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATA Sbjct 410 VVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATA 469 Query 495 MVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAI 554 MVETGSTGDTVIFEEFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLLSPDEF I Sbjct 470 MVETGSTGDTVIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLSPDEFGI 529 Query 555 VHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 VHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPG+MD+D Sbjct 530 VHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGAMDND 577 >gi|240169517|ref|ZP_04748176.1| transcription termination factor Rho [Mycobacterium kansasii ATCC 12478] Length=619 Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/621 (80%), Positives = 530/621 (86%), Gaps = 21/621 (3%) Query 1 VTDTDLITAGESTDG-KPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSG 59 +TDTDLITA EST K ++ D D+N P GSL+TMVLPELRALANRAGVKGTSG Sbjct 1 MTDTDLITASESTGAEKQPESVTKDTSDVNTMAPGGSLSTMVLPELRALANRAGVKGTSG 60 Query 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 MRKNELIAAI+EI QANGA A S+Q+ D+ + P + A E + DS Q Sbjct 61 MRKNELIAAIQEITGQANGASASSTSSQDSDRSE-PTVTAKAAAGEEAPAEGRSDSGETQ 119 Query 120 VRPERR-------SATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERG--TDAGGDQ 170 R R+ SA + +GE A T +D R G Q A+T+ERG TD GD+ Sbjct 120 RRERRKSSREAGTSAAESGDQAAAGEDAATTDEDAKGRPG-QGGARTDERGDKTDERGDK 178 Query 171 GGDQQ-------ASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVV 223 +++ SGGQQARGDEDGE RQGRRGRRFRDRRRRGERSGDGAEAE+REDDV+ Sbjct 179 TDEREDSGGEQQGSGGQQARGDEDGEGRQGRRGRRFRDRRRRGERSGDGAEAEVREDDVL 238 Query 224 QPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGE--Q 281 QPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EGE Sbjct 239 QPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEAGD 298 Query 282 PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIM 341 N RQKFNPLVRLDS+NGGSVEDAKKRP+F KLTPLYPNQRLRLET+T+RLTTRVIDLIM Sbjct 299 KNPRQKFNPLVRLDSVNGGSVEDAKKRPDFSKLTPLYPNQRLRLETTTDRLTTRVIDLIM 358 Query 342 PIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGE 401 PIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGE Sbjct 359 PIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGE 418 Query 402 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 461 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS Sbjct 419 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 478 Query 462 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD 521 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD Sbjct 479 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD 538 Query 522 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKT 581 RKI+ERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLD+HQAIDLLMSQLRKT Sbjct 539 RKISERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDAHQAIDLLMSQLRKT 598 Query 582 KNNYEFLVQVSKTTPGSMDSD 602 KNNYEFLVQVSKTTPG+MD+D Sbjct 599 KNNYEFLVQVSKTTPGNMDND 619 >gi|183984071|ref|YP_001852362.1| transcription termination factor Rho [Mycobacterium marinum M] gi|183177397|gb|ACC42507.1| transcription termination factor Rho [Mycobacterium marinum M] Length=621 Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/623 (81%), Positives = 534/623 (86%), Gaps = 23/623 (3%) Query 1 VTDTDLITAGESTDG-KPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSG 59 +TDTDLITAGESTD K SD+ D DLN P G+LATMVLPELRALAN+ GVKGTSG Sbjct 1 MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 Query 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQ--GEQTPTEQIDSQS 117 MRKNELIAAI+E R +ANG PA + + S+EAPA + P ++ ++ S Sbjct 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNASS 120 Query 118 ------------QQVRPERRSATREAG--PSGSGERAGTAADDTDNRQGG----QQDAKT 159 + R AG P G+RA A D DN Q Q+DAKT Sbjct 121 GDTVRRERRRSSRDSGTSSRDGADSAGGSPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 Query 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 + ++GGDQG QQ SGGQQ+RG++DGE RQGRRGRRFRDRRRRGERSGDG++AELRE Sbjct 179 DGGAAESGGDQGAGQQGSGGQQSRGEDDGEGRQGRRGRRFRDRRRRGERSGDGSDAELRE 238 Query 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 Query 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQRLRLET+TERLTTRVIDL Sbjct 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTTERLTTRVIDL 358 Query 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 Query 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 Query 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 Query 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 Query 580 KTKNNYEFLVQVSKTTPGSMDSD 602 KTKNNYEFLVQVSKTTPG+MD+D Sbjct 599 KTKNNYEFLVQVSKTTPGNMDND 621 >gi|118619171|ref|YP_907503.1| transcription termination factor Rho [Mycobacterium ulcerans Agy99] gi|118571281|gb|ABL06032.1| transcription termination factor Rho [Mycobacterium ulcerans Agy99] Length=621 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/623 (81%), Positives = 531/623 (86%), Gaps = 23/623 (3%) Query 1 VTDTDLITAGESTDG-KPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSG 59 +TDTDLITAGESTD K SD+ D DLN P G+LATMVLPELRALAN+ GVKGTSG Sbjct 1 MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 Query 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQ--GEQTPTEQIDSQS 117 MRKNELIAAI+E R + NG PA + + S+EAPA + P ++ ++ S Sbjct 61 MRKNELIAAIQEFRDRTNGTPAAAEPTPDSGEQKSSASTEAPAVNEATKDAPQQEQNASS 120 Query 118 ------------QQVRPERRSATREAG--PSGSGERAGTAADDTDNRQGG----QQDAKT 159 + R AG P G+RA A D DN Q Q+DAK Sbjct 121 GDTVRRERRRSSRDSETSSRDGADSAGESPDKRGKRA--AGGDADNNQKAPEKAQEDAKI 178 Query 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 + ++GGDQG QQ SGGQQ+RG++DGE RQGRRGRRFRDRRRRGERSGDG++AELRE Sbjct 179 DGGAAESGGDQGAGQQGSGGQQSRGEDDGEGRQGRRGRRFRDRRRRGERSGDGSDAELRE 238 Query 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 Query 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQRLRLET+TERLTTRVIDL Sbjct 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTTERLTTRVIDL 358 Query 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 Query 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 GEVIASTFDRPPSDHTS AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct 419 GEVIASTFDRPPSDHTSAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 Query 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 Query 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 Query 580 KTKNNYEFLVQVSKTTPGSMDSD 602 KTKNNYEFLVQVSKTTPG+MD+D Sbjct 599 KTKNNYEFLVQVSKTTPGNMDND 621 >gi|254821296|ref|ZP_05226297.1| transcription termination factor Rho [Mycobacterium intracellulare ATCC 13950] Length=601 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/609 (79%), Positives = 510/609 (84%), Gaps = 39/609 (6%) Query 23 TDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAV 82 TD PD + AG+L+TMVLPELRALAN+ GVKGTSGMRKNELIAAI+E+R QANG PA Sbjct 3 TDTPDAKTNASAGALSTMVLPELRALANQVGVKGTSGMRKNELIAAIKEVRGQANGVPAN 62 Query 83 DRSAQEHDKGDRPPS-------------SEAPATQGEQT---PTEQIDSQSQQVRPERRS 126 + E D G +P + ++APA + Q PTE R ERR Sbjct 63 GTKSTE-DSG-KPDTKDDDTKDTKDDNGADAPAAKEGQNGAAPTEA-------PRRERRG 113 Query 127 ATREAGPSG----------SGERAGTAADDTDNRQGGQ-QDAKTEERGTDAGGD--QGGD 173 A+R+AG + +G R G A +TD R+G Q +D + E RG G + QG Sbjct 114 ASRDAGSTDRANEDADRERAGGRDGGATGETDGREGKQDKDNQNENRGQGGGSEDQQGSG 173 Query 174 QQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVL 233 Q G + D+DGE R GRRGRRFRDRRRRGERSG+G +AELREDDVVQPVAGILDVL Sbjct 174 GQQGRGGSNQQDDDGEGRGGRRGRRFRDRRRRGERSGEGGDAELREDDVVQPVAGILDVL 233 Query 234 DNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVR 293 DNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVPKEGEQPNQRQKFNPLVR Sbjct 234 DNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPKEGEQPNQRQKFNPLVR 293 Query 294 LDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVS 353 LDS+NGGSVEDAKKRP+F KLTPLYPNQRLRLET+ +RLTTRVIDLIMPIGKGQRALIVS Sbjct 294 LDSVNGGSVEDAKKRPDFSKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVS 353 Query 354 PPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 413 PPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDMQRSVKGEVI+STFDRPPSD Sbjct 354 PPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPPSD 413 Query 414 HTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPK 473 HT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPK Sbjct 414 HTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPK 473 Query 474 RFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAV 533 RFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKI+ERRVFPAV Sbjct 474 RFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKISERRVFPAV 533 Query 534 DVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSK 593 DVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTK NYEFLVQVSK Sbjct 534 DVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVSK 593 Query 594 TTPGSMDSD 602 TTPG MD+D Sbjct 594 TTPG-MDND 601 >gi|333989936|ref|YP_004522550.1| transcription termination factor Rho [Mycobacterium sp. JDM601] gi|333485904|gb|AEF35296.1| transcription termination factor Rho [Mycobacterium sp. JDM601] Length=682 Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/634 (71%), Positives = 478/634 (76%), Gaps = 61/634 (9%) Query 18 SDAAATDPPD---LNADEPAGSLATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRR 74 SD+A PD A EP SL+ MVLPELRALANR GVKG SGMRK+ELIAAI E+ Sbjct 61 SDSAPAATPDNGAATAAEP--SLSAMVLPELRALANRVGVKGASGMRKSELIAAIREVGG 118 Query 75 QANGAPAVDRSAQEHDK---------------GDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 + D GD P EA T+ ++ Sbjct 119 NGGNQGSGGNGGGGGDAAETPAAEAPANGAAVGDEPAQPEA---------TDAGEATEAP 169 Query 120 VRPERRSATREAG-PSGSGE--------RAGTAADDTDNRQGGQQDAKTEERGTDAGGDQ 170 R ERR A+R G P+ GE + G A+ D + + D K E+ G G + Sbjct 170 PRRERRGASRATGAPAADGEDQDKGEPRKQGEASKQGDGNKQDKPDEKAEQTGGRRDGAK 229 Query 171 GGDQQASGGQQARGDE-DGEARQGRRGRRFRDRRRRGERSGDGAE--------------- 214 D G QA+GD+ G+ +G R + ++ G+ Sbjct 230 SDDAAGGKGDQAKGDQAKGDQAKGDEQNRGQQGQQNGDDDDGRGGRRGRRFRDRRRRGER 289 Query 215 ------AELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDA 268 ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDA Sbjct 290 GGEGGDTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDA 349 Query 269 VTGAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETS 328 VTGAVRVP++GEQPNQRQKFNPLVRLDS+NGG VEDAKKRPEF KLTPLYPNQRLRLETS Sbjct 350 VTGAVRVPRDGEQPNQRQKFNPLVRLDSVNGGPVEDAKKRPEFSKLTPLYPNQRLRLETS 409 Query 329 TERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERP 388 TE+LTTRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERP Sbjct 410 TEKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERP 469 Query 389 EEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRA 448 EEVTDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRA Sbjct 470 EEVTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRA 529 Query 449 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFE 508 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIATAMVETGSTGDTVIFE Sbjct 530 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEDGGSLTIIATAMVETGSTGDTVIFE 589 Query 509 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSH 568 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRR+LSGLDSH Sbjct 590 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRLLSGLDSH 649 Query 569 QAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 QAIDLLMSQLRKTKNNYEFLVQVSKTTPG MD+D Sbjct 650 QAIDLLMSQLRKTKNNYEFLVQVSKTTPG-MDND 682 >gi|296170238|ref|ZP_06851831.1| transcription termination factor Rho [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895114|gb|EFG74832.1| transcription termination factor Rho [Mycobacterium parascrofulaceum ATCC BAA-614] Length=615 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/389 (97%), Positives = 383/389 (99%), Gaps = 0/389 (0%) Query 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAV Sbjct 227 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAV 286 Query 274 RVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLT 333 RVPK+GEQPNQRQKFNPLVRLDS+NGG VEDAKKRP+F KLTPLYPNQRLRLET+ +RLT Sbjct 287 RVPKDGEQPNQRQKFNPLVRLDSVNGGPVEDAKKRPDFSKLTPLYPNQRLRLETTPDRLT 346 Query 334 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 393 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD Sbjct 347 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 406 Query 394 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 453 M RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS Sbjct 407 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 466 Query 454 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 513 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT Sbjct 467 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 526 Query 514 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 573 GNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL Sbjct 527 GNAELKLDRKISERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 586 Query 574 LMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 LMSQLRKTKNNYEFLVQVSKTTPGSMD+D Sbjct 587 LMSQLRKTKNNYEFLVQVSKTTPGSMDND 615 >gi|343928055|ref|ZP_08767520.1| transcription termination factor Rho [Gordonia alkanivorans NBRC 16433] gi|343762063|dbj|GAA14446.1| transcription termination factor Rho [Gordonia alkanivorans NBRC 16433] Length=675 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/690 (63%), Positives = 482/690 (70%), Gaps = 104/690 (15%) Query 1 VTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGS--------LATMVLPELRALANRA 52 +TDTDLITA ++A T PD + +PA + L+ MVL ELR +A Sbjct 1 MTDTDLITAPAE-----QESAGTAGPD--SGQPAKTRARAARTGLSGMVLSELRTVAGEL 53 Query 53 GVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQ 112 G+KGTSGMRK +LIAAI+E RQ GA A+ D ++EA +T+ + T + Sbjct 54 GIKGTSGMRKGDLIAAIKE--RQGGGA------AKSADAKAEAKNTEAKSTEAKNTEAKA 105 Query 113 IDSQSQQVRPE-------RRSA-------------TREAGPSGSGERAGTAADDTDNRQG 152 +S + + E RRSA + E G SG R G + D + + Sbjct 106 AESAGSEAKTEAKSSETRRRSAKASSEDGQLSIVESAEDGDSGRAPRTGRKSADAEAGEQ 165 Query 153 GQQDAKTEERGTDAGGD--QGGDQQA------------------SGGQQARGDEDGEARQ 192 + K +E DA GD + GD A GGQ G ++ + Q Sbjct 166 RADEQKGDEPKGDAKGDSAKAGDSDAGEQRNRRNRNQNRDNQNREGGQNREGGQNRD-NQ 224 Query 193 GRRGRRFRDRRRRGERSGDGA--------------------------------------- 213 R G + RD + R G Sbjct 225 NRDGGQNRDNQNRDGGQNRGGGQNRDNRDDRDDDGEGGGRRRGRRFRERRRGRDRDGGSQ 284 Query 214 -EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGA 272 E ++ EDDV+QPVAGILDVLDNYAFVRTSGYL G +DVYVSMNMVRKNG+RRGDA+TGA Sbjct 285 NEPQVSEDDVLQPVAGILDVLDNYAFVRTSGYLAGSNDVYVSMNMVRKNGLRRGDAITGA 344 Query 273 VRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERL 332 V+VP+EG+Q NQRQKFNPLVRLD++NGG VE AKKRPEF KLTPLYPNQRLRLET+ +RL Sbjct 345 VKVPREGDQQNQRQKFNPLVRLDTVNGGEVEAAKKRPEFNKLTPLYPNQRLRLETTPDRL 404 Query 333 TTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVT 392 +TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT NNPECHLMVVLVDERPEEVT Sbjct 405 STRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITVNNPECHLMVVLVDERPEEVT 464 Query 393 DMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 452 DMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNNA Sbjct 465 DMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVESGKDVVVLLDSITRLGRAYNNA 524 Query 453 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG 512 SPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKG Sbjct 525 SPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKG 584 Query 513 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAID 572 TGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRR+LSGLDS QAID Sbjct 585 TGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRLLSGLDSQQAID 644 Query 573 LLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 LL+SQL+KTK N EFL+ V KT PG+ +D Sbjct 645 LLISQLKKTKTNIEFLMSVQKTAPGAGGND 674 >gi|118471197|ref|YP_889206.1| transcription termination factor Rho [Mycobacterium smegmatis str. MC2 155] gi|118172484|gb|ABK73380.1| transcription termination factor Rho [Mycobacterium smegmatis str. MC2 155] Length=664 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/391 (95%), Positives = 378/391 (97%), Gaps = 2/391 (0%) Query 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 Query 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 Query 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 Query 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 Query 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 Query 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 Query 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 80/237 (34%), Positives = 114/237 (49%), Gaps = 37/237 (15%) Query 1 VTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 +T+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 Query 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 RK+ELIAAI R ++NG R + +PAT QT EQ Sbjct 59 RKSELIAAIRAHRGESNG---------------RTAEASSPATADAQT-GEQAAEAPAPR 102 Query 121 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGD---------QG 171 R ERR++TR+AG + G A + + Q +AKTE + + Sbjct 103 RRERRASTRQAGAPVA--EKGEAGEKAGEKTEAQPEAKTEAQPEAKAEAPAEAKTERAEK 160 Query 172 GDQQASGGQQ--ARGDEDGEARQGR-RGRRFR----DRRRRGERSG-DGAEAELRED 220 D+ A Q A E GE+++ + R RR R DR RGE+ G DG + + ++D Sbjct 161 ADKPAKEAQTKAAEAPEAGESQESQPRQRRERSGRQDRADRGEKDGQDGKQDQGKQD 217 >gi|120405299|ref|YP_955128.1| transcription termination factor Rho [Mycobacterium vanbaalenii PYR-1] gi|119958117|gb|ABM15122.1| transcription termination factor Rho [Mycobacterium vanbaalenii PYR-1] Length=684 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/387 (95%), Positives = 377/387 (98%), Gaps = 0/387 (0%) Query 216 ELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRV 275 ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAVRV Sbjct 298 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRV 357 Query 276 PKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTR 335 PK+GEQ NQRQKFNPLVRLDS+NGG VE+AKKRPEF KLTPLYPN RLRLETS+++LTTR Sbjct 358 PKDGEQSNQRQKFNPLVRLDSVNGGPVEEAKKRPEFQKLTPLYPNTRLRLETSSDKLTTR 417 Query 336 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQ 395 VIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERPEEVTDMQ Sbjct 418 VIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVTDMQ 477 Query 396 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 455 RSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA Sbjct 478 RSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 537 Query 456 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 515 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN Sbjct 538 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 597 Query 516 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 575 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFA+VHKLRRVLSGLD HQAIDLLM Sbjct 598 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAVVHKLRRVLSGLDPHQAIDLLM 657 Query 576 SQLRKTKNNYEFLVQVSKTTPGSMDSD 602 SQLRKTKNNYEFLVQVSK TPG +D+D Sbjct 658 SQLRKTKNNYEFLVQVSKNTPGGVDND 684 >gi|108800857|ref|YP_641054.1| transcription termination factor Rho [Mycobacterium sp. MCS] gi|119869997|ref|YP_939949.1| transcription termination factor Rho [Mycobacterium sp. KMS] gi|126436455|ref|YP_001072146.1| transcription termination factor Rho [Mycobacterium sp. JLS] gi|108771276|gb|ABG09998.1| transcription termination factor Rho [Mycobacterium sp. MCS] gi|119696086|gb|ABL93159.1| transcription termination factor Rho [Mycobacterium sp. KMS] gi|126236255|gb|ABN99655.1| transcription termination factor Rho [Mycobacterium sp. JLS] Length=663 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/389 (95%), Positives = 380/389 (98%), Gaps = 2/389 (0%) Query 216 ELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRV 275 E+REDDVVQPVAGILDVLDNYAFVRTSGYLPGP+DVYVSMNMVRKNG+RRGDAVTGAV+V Sbjct 275 EIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDAVTGAVKV 334 Query 276 PKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLT 333 PKEGE NQRQKFNPLVRLDS+NGG VEDA+KRPEFGKLTPLYPNQRLRLETS ++LT Sbjct 335 PKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLETSPDKLT 394 Query 334 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 393 TRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERPEEVTD Sbjct 395 TRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVTD 454 Query 394 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 453 MQRSVKGEVIASTFDRPPSDHT+VAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS Sbjct 455 MQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 514 Query 454 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 513 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTI+ATAMVETGSTGDTVIFEEFKGT Sbjct 515 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVIFEEFKGT 574 Query 514 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 573 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEFAIVHKLRRVLSGLDSHQAIDL Sbjct 575 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLDSHQAIDL 634 Query 574 LMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 LMSQLRKTK NYEFLVQVSK TPGS+D+D Sbjct 635 LMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 >gi|54023019|ref|YP_117261.1| transcription termination factor Rho [Nocardia farcinica IFM 10152] gi|54014527|dbj|BAD55897.1| putative transcription termination factor Rho [Nocardia farcinica IFM 10152] Length=681 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/646 (64%), Positives = 467/646 (73%), Gaps = 90/646 (13%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDR-- 94 L M+LP+LRALA G++GTSGMRK +LIAAI+E QA A D+ A+ K ++ Sbjct 43 LTGMLLPQLRALAGELGIRGTSGMRKGDLIAAIKE--NQAGRAAKADKPARSEAKSEQTA 100 Query 95 -----------PPSSEAPATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGSGE----- 138 P S+A + + RSA SG+GE Sbjct 101 LDVQPAKDKTAPAESKAAEVKDAAPTAQAAAPTQAPAAAPERSAESAPAESGAGEGKTAE 160 Query 139 -RAGTAADDT-----------------DNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ 180 +A + +DT R GG ++A+ +E TDA DQG ++ Sbjct 161 GKAAESGEDTGRESGQRGRGRQRRGRDQARSGGGENAEAQESKTDA--DQGERRR----D 214 Query 181 QARGDEDGEARQGRRGRRFRDRRRRGERSG---DGA------------------------ 213 + +GD G+ + ++G R ++ +R + +G DG Sbjct 215 RNQGDRQGQGERAQQGERAQNAEQRNQNAGGRNDGGRNDGGRTDGRGGDDEEGGRGRRGR 274 Query 214 -------------------EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVS 254 E E+REDDV+QPVAGILDVLDNYAFVRTSGYL GP+DVYVS Sbjct 275 RFRERRRGRDRESGGGESRELEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVS 334 Query 255 MNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKL 314 MN+VRKNG+RRGDA+TGAVR P++GEQ NQRQKF+PLVRLD++NGG VE AK+RPEFGKL Sbjct 335 MNLVRKNGLRRGDAITGAVRAPRDGEQGNQRQKFDPLVRLDTVNGGDVEAAKRRPEFGKL 394 Query 315 TPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNN 374 TPLYPNQRLRLET+ +LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAI NN Sbjct 395 TPLYPNQRLRLETTPNKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIATNN 454 Query 375 PECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKD 434 PEC+LMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVE GKD Sbjct 455 PECYLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEMGKD 514 Query 435 VVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATA 494 VVVLLDSITRLGRAYNN+SPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATA Sbjct 515 VVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATA 574 Query 495 MVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAI 554 MVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE A+ Sbjct 575 MVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAV 634 Query 555 VHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 +HKLRRVLSGLDSHQAIDLL+ +L+K+KNN EFL+QVSKT PG++D Sbjct 635 LHKLRRVLSGLDSHQAIDLLIDRLKKSKNNLEFLMQVSKTAPGALD 680 >gi|226360609|ref|YP_002778387.1| transcription termination factor Rho [Rhodococcus opacus B4] gi|226239094|dbj|BAH49442.1| transcription termination factor Rho [Rhodococcus opacus B4] Length=687 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/690 (62%), Positives = 484/690 (71%), Gaps = 94/690 (13%) Query 1 VTDTDLITA---GESTD------GKPSDAAATDPPDLNADEPAGS-LATMVLPELRALAN 50 +TDTDLI A S D G + A++ AD G+ L+ MVL ELR+LA Sbjct 1 MTDTDLIAAPVRASSVDTVGAQAGDSTQASSVTASTKRADARRGAGLSGMVLTELRSLAG 60 Query 51 RAGVKGTSGMRKNELIAAIEE----------------IRRQANGAP---------AVDRS 85 G+KG SGMRK +LIAAI+E R +A A V Sbjct 61 ELGIKGISGMRKGDLIAAIKERQGGSAAPAAAATETAPRTRATRAKREQSAQTELEVTPQ 120 Query 86 AQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGSGERAGTAAD 145 A+ +K P ++E G T+ ++ + +RR + R AG G++ G A D Sbjct 121 AEPAEKAAEPKTAETATGDGAAADTDT--AEGGRRGRQRRGSARRAGAPEPGDQGGNAQD 178 Query 146 D-----TDNRQG------GQQDAKTEERGTDAGGDQGGDQQASGGQQARGDEDGEAR--Q 192 TD +Q +QDA + D G+QGGD+ RGD GE R + Sbjct 179 TASATATDTQQAERKQAEDRQDAAEKPAKQDGSGEQGGDRNRRERGDTRGDR-GETRGDR 237 Query 193 GRRGRRFRDRRRRGERS--GDGA------------------------------------- 213 G RG R DR RG+R G+G Sbjct 238 GERGDRG-DRDNRGDRGQGGNGPRTNDNRPGDDEEGGRGRRGRRFRERRRGRDRGEGGGG 296 Query 214 ---EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVT 270 E E+REDDV+QPVAGILDVLDNYAFVRTSGYL GP+DVYVSMN++RKNG+RRGDA+T Sbjct 297 DARETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAIT 356 Query 271 GAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTE 330 GAVRV +EG+Q NQRQKFNPLVR+D++NGG VE AKKRPEFGKLTPLYPNQRLRLET+ Sbjct 357 GAVRVGREGDQGNQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLRLETTPN 416 Query 331 RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 390 LTTRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANAI NNPEC+LMVVLVDERPEE Sbjct 417 ILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLVDERPEE 476 Query 391 VTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 450 VTDMQRSVKGEVI+STFDRPP DHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYN Sbjct 477 VTDMQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITRLGRAYN 536 Query 451 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 510 N+SPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEF Sbjct 537 NSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEF 596 Query 511 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 570 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE A++HKLRRVLSGLDSHQA Sbjct 597 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQA 656 Query 571 IDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 IDLL+ +L+K+K+N EFL+QVSKT PG++D Sbjct 657 IDLLIDRLKKSKSNLEFLMQVSKTAPGAID 686 >gi|111018486|ref|YP_701458.1| transcription termination factor Rho [Rhodococcus jostii RHA1] gi|110818016|gb|ABG93300.1| transcription termination factor Rho [Rhodococcus jostii RHA1] Length=694 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/696 (62%), Positives = 482/696 (70%), Gaps = 99/696 (14%) Query 1 VTDTDLITA---GESTD------GKPSDAAATDPPD---------LNADEPAGSLATMVL 42 +TDTDLI A S D G S A++T P A AG L+ MVL Sbjct 1 MTDTDLIAAPVRASSVDTVGAQAGDSSQASSTAPGQGAVTASTKRAEARRGAG-LSGMVL 59 Query 43 PELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPA 102 ELR LA G+KG SGMRK +LIAAI+E + ++ A A + R E+ Sbjct 60 TELRTLAGELGIKGISGMRKGDLIAAIKERQGGSSAPAAAATEAAPRTRATRAKRVESAQ 119 Query 103 TQGEQTPTEQIDSQSQQVRPE-------------------------RRSATREAGPSGSG 137 T+ E TP Q+++ + P+ RR + R AG G Sbjct 120 TELEVTP--QVETTEKAAEPKTAEPATGDGAAADTDTAEGGRRGRQRRGSARRAGAPEQG 177 Query 138 ERAGTAAD-------DTDNRQGGQ----QDAKTEERGTDAGGDQGGDQQAS--------- 177 +++G A D DT + Q QD+ + D G+QGGD+ Sbjct 178 DQSGNAQDTASANAADTQQAERKQADDRQDSAEKPAKQDGSGEQGGDRNRRERGGDRGDR 237 Query 178 -------GGQQARGDED--GEARQGRRGRRFRDRR------------------------R 204 G + RGD D G+ QG G R D R R Sbjct 238 GDTRGERGDRGERGDRDNRGDRSQGNNGPRNNDNRPGDDEEGGRGRRGRRFRERRRGRDR 297 Query 205 RGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMR 264 GD E E+REDDV+QPVAGILDVLDNYAFVRTSGYL GP+DVYVSMN++RKNG+R Sbjct 298 GEGGGGDARETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLR 357 Query 265 RGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLR 324 RGDA+TGAVRV +EGEQ NQRQKFNPLVR+D++NGG VE AKKRPEFGKLTPLYPNQRLR Sbjct 358 RGDAITGAVRVGREGEQGNQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLR 417 Query 325 LETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLV 384 LET+ LTTRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANAI NNPEC+LMVVLV Sbjct 418 LETTPNILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLV 477 Query 385 DERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITR 444 DERPEEVTDMQRSVKGEVI+STFDRPP DHTSVAELAIERAKRLVE GKDVVVLLDSITR Sbjct 478 DERPEEVTDMQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITR 537 Query 445 LGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDT 504 LGRAYNN+SPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDT Sbjct 538 LGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDT 597 Query 505 VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSG 564 VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE A++HKLRRVLSG Sbjct 598 VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSG 657 Query 565 LDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 LDSHQAIDLL+ +L+K+K+N EFL+QVSKT PG++D Sbjct 658 LDSHQAIDLLIDRLKKSKSNIEFLMQVSKTAPGAID 693 >gi|315443354|ref|YP_004076233.1| transcription termination factor Rho [Mycobacterium sp. Spyr1] gi|315261657|gb|ADT98398.1| transcription termination factor Rho [Mycobacterium sp. Spyr1] Length=696 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/390 (93%), Positives = 371/390 (96%), Gaps = 3/390 (0%) Query 216 ELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRV 275 ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAVRV Sbjct 307 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRV 366 Query 276 PKEGE---QPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERL 332 P++ E N RQKFNPLVRLD++NG VE+AKKRPEF KLTPLYPNQRLRLETS+++L Sbjct 367 PRDNEGGGDKNPRQKFNPLVRLDTVNGKPVEEAKKRPEFTKLTPLYPNQRLRLETSSDKL 426 Query 333 TTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVT 392 TTRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERPEEVT Sbjct 427 TTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVT 486 Query 393 DMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 452 DMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA Sbjct 487 DMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 546 Query 453 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG 512 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG Sbjct 547 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG 606 Query 513 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAID 572 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLS DEFA+VHKLRRVLSGLD HQAID Sbjct 607 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSTDEFAVVHKLRRVLSGLDPHQAID 666 Query 573 LLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 LLMSQLRKTKNNYEFLVQVSK TPG D D Sbjct 667 LLMSQLRKTKNNYEFLVQVSKNTPGGNDHD 696 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/118 (43%), Positives = 62/118 (53%), Gaps = 17/118 (14%) Query 1 VTDTDLITAGESTD-GKPSDAAATDPPDLNADEP---------AGSLATMVLPELRALAN 50 +TDTDL TAG + D G+ + D + GSL +MVLPELRA+A Sbjct 1 MTDTDLFTAGGNADSGEMPNTVTADISTSAPADSAPAAAPARRGGSLTSMVLPELRAMAK 60 Query 51 RAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQT 108 GV+G SGMRK ELIA+I E R +ANG + E KGD P S+ A G T Sbjct 61 EIGVEGASGMRKGELIASIRERRGEANG-------SAETKKGDAPTSAPAETAAGSAT 111 >gi|145222889|ref|YP_001133567.1| transcription termination factor Rho [Mycobacterium gilvum PYR-GCK] gi|145215375|gb|ABP44779.1| transcription termination factor Rho [Mycobacterium gilvum PYR-GCK] Length=691 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/390 (93%), Positives = 371/390 (96%), Gaps = 3/390 (0%) Query 216 ELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRV 275 ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAVRV Sbjct 302 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRV 361 Query 276 PKEGE---QPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERL 332 P++ E N RQKFNPLVRLD++NG VE+AKKRPEF KLTPLYPNQRLRLETS+++L Sbjct 362 PRDNEGGGDKNPRQKFNPLVRLDTVNGKPVEEAKKRPEFTKLTPLYPNQRLRLETSSDKL 421 Query 333 TTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVT 392 TTRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERPEEVT Sbjct 422 TTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVT 481 Query 393 DMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 452 DMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA Sbjct 482 DMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 541 Query 453 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG 512 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG Sbjct 542 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG 601 Query 513 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAID 572 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLS DEFA+VHKLRRVLSGLD HQAID Sbjct 602 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSTDEFAVVHKLRRVLSGLDPHQAID 661 Query 573 LLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 LLMSQLRKTKNNYEFLVQVSK TPG D D Sbjct 662 LLMSQLRKTKNNYEFLVQVSKNTPGGNDHD 691 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/118 (44%), Positives = 62/118 (53%), Gaps = 17/118 (14%) Query 1 VTDTDLITAGESTD-GKPSDAAATDPPDLNADEP---------AGSLATMVLPELRALAN 50 +TDTDL TAG + D G+ + D + GSL +MVLPELRA+A Sbjct 1 MTDTDLFTAGGNADSGEMPNTVTADISTSAPADSAPAAAPARRGGSLTSMVLPELRAMAK 60 Query 51 RAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQT 108 GV+G SGMRK ELIAAI E R +ANG + E KGD P S+ A G T Sbjct 61 EIGVEGASGMRKGELIAAIRERRGEANG-------SAETKKGDAPTSAPAETAAGSAT 111 >gi|169628529|ref|YP_001702178.1| transcription termination factor Rho [Mycobacterium abscessus ATCC 19977] gi|169240496|emb|CAM61524.1| Probable transcription termination factor Rho [Mycobacterium abscessus] Length=646 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/390 (93%), Positives = 374/390 (96%), Gaps = 4/390 (1%) Query 212 GAEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTG 271 G E ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMN+VRKNG+RRGDA+TG Sbjct 249 GGETELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITG 308 Query 272 AVRVPKE---GEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETS 328 AVRVP++ G Q NQRQKFNPLVRLDS+NGG VEDAKKRP+F KLTPLYPNQRLRLET+ Sbjct 309 AVRVPRDPDAGNQ-NQRQKFNPLVRLDSVNGGPVEDAKKRPDFTKLTPLYPNQRLRLETT 367 Query 329 TERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERP 388 TE+LTTRVIDLIMPIGKGQRALIVSPPKAGKTTI+Q+IANAI+ NNPECHLMVVLVDERP Sbjct 368 TEKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQNIANAISANNPECHLMVVLVDERP 427 Query 389 EEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRA 448 EEVTDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRA Sbjct 428 EEVTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRA 487 Query 449 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFE 508 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFE Sbjct 488 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFE 547 Query 509 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSH 568 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELL+S DEFAIVHKLRRVLSGLDSH Sbjct 548 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLMSGDEFAIVHKLRRVLSGLDSH 607 Query 569 QAIDLLMSQLRKTKNNYEFLVQVSKTTPGS 598 QAIDLLMSQLRKTKNNYEFLVQVSK TPG+ Sbjct 608 QAIDLLMSQLRKTKNNYEFLVQVSKNTPGA 637 >gi|262201844|ref|YP_003273052.1| transcription termination factor Rho [Gordonia bronchialis DSM 43247] gi|262085191|gb|ACY21159.1| transcription termination factor Rho [Gordonia bronchialis DSM 43247] Length=662 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/389 (88%), Positives = 367/389 (95%), Gaps = 0/389 (0%) Query 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 E ++ EDDV+QPVAGILDVLDNYAFVRTSGYL GP+DVYVSMN+VRKNG+RRGDA+TGAV Sbjct 274 EPQVSEDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAV 333 Query 274 RVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLT 333 +VP+EGEQ NQRQKFNPLVRLD++NGG VE A+KRPEFGKLTPLYPNQRLRLET+ ERL Sbjct 334 KVPREGEQQNQRQKFNPLVRLDTVNGGDVEAARKRPEFGKLTPLYPNQRLRLETTPERLD 393 Query 334 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 393 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT NNPECHLMVVLVDERPEEVTD Sbjct 394 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITINNPECHLMVVLVDERPEEVTD 453 Query 394 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 453 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNNAS Sbjct 454 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVESGKDVVVLLDSITRLGRAYNNAS 513 Query 454 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 513 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIA+A+VETGSTGDTVIFEEFKGT Sbjct 514 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEFKGT 573 Query 514 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 573 GNAELKLDRKIA+RRVFPAVDVN S TRKDEL++SP+EF+I+HKLRRVLSGLDS QAIDL Sbjct 574 GNAELKLDRKIADRRVFPAVDVNQSSTRKDELMMSPEEFSIMHKLRRVLSGLDSQQAIDL 633 Query 574 LMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 L+SQL+KTK N EFL+QV PG+M D Sbjct 634 LLSQLKKTKTNVEFLMQVQSNAPGAMKDD 662 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/210 (32%), Positives = 95/210 (46%), Gaps = 34/210 (16%) Query 1 VTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 +T+TDLITA + +G AA+ L MVL ELRA+A G+KGTSGM Sbjct 1 MTETDLITA-PAEEGSADSAASGAASKSRTRTQRTGLTGMVLTELRAVAGELGIKGTSGM 59 Query 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 RK +LIAAI+E + A A + + ++ + P S AP +Q+ Sbjct 60 RKGDLIAAIKERQAGAASANGIGEAEKKARRASAPKDSGAP----------------EQM 103 Query 121 RPERRSATREAGPSGSG-ERAGTAADDTDNRQGGQQDAK------------TEERGTDAG 167 + T AG +G E GTA T R+GG A+ T ++ D Sbjct 104 TLADSAGTGSAGTGSAGTESGGTAEGPTRRRRGGAAQAETARSESADPAAPTADKAVDKS 163 Query 168 GDQGGDQ-QASG---GQQARGDEDGEARQG 193 D+ D+ +A G GQ GD ++RQG Sbjct 164 TDKTADRPKADGDNRGQARSGDAQSDSRQG 193 >gi|333920931|ref|YP_004494512.1| transcription termination factor Rho [Amycolicicoccus subflavus DQS3-9A1] gi|333483152|gb|AEF41712.1| Transcription termination factor Rho [Amycolicicoccus subflavus DQS3-9A1] Length=699 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/392 (87%), Positives = 371/392 (95%), Gaps = 0/392 (0%) Query 211 DGAEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVT 270 D + ++REDDV+QPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDA+T Sbjct 308 DTTDTDVREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAIT 367 Query 271 GAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTE 330 GAVRVPKEGEQ NQRQKFNPLVRLD+ING + E A+KRP+FGKLTPLYPN+RLRLET+ Sbjct 368 GAVRVPKEGEQTNQRQKFNPLVRLDTINGMAPEQARKRPDFGKLTPLYPNERLRLETTPN 427 Query 331 RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 390 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQD++NAI NNPEC+LMVVLVDERPEE Sbjct 428 VLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDVSNAIAVNNPECYLMVVLVDERPEE 487 Query 391 VTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 450 VTDMQRSV+GEVI+STFDRPPSDHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYN Sbjct 488 VTDMQRSVRGEVISSTFDRPPSDHTSVAELAIERAKRLVEIGKDVVVLLDSITRLGRAYN 547 Query 451 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 510 N+SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGS GDTVIFEEF Sbjct 548 NSSPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSQGDTVIFEEF 607 Query 511 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 570 KGTGNAELKLDR+IAERRVFPAVDV PSGTR+D+LLL+PDEFA++HKLRRVLSGLDSHQA Sbjct 608 KGTGNAELKLDRRIAERRVFPAVDVIPSGTRRDDLLLNPDEFAVLHKLRRVLSGLDSHQA 667 Query 571 IDLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 IDLL+ +L+K+KNN EFL+QV+KT PG+M D Sbjct 668 IDLLIDRLKKSKNNLEFLMQVAKTAPGAMGED 699 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 14/100 (14%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPP 96 LA MVL ELRALA G++GTSGMRK+ELIAAI+E +R A+ A D+P Sbjct 64 LAGMVLTELRALAGSLGIRGTSGMRKSELIAAIQERQRAASSESA-----------DKPE 112 Query 97 SSEAPATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGS 136 A AT + P E ++ + RR A+R+A +G+ Sbjct 113 PKPADAT---EKPAEDAEASAPAPARGRRRASRQATDTGA 149 >gi|229490044|ref|ZP_04383897.1| transcription termination factor Rho [Rhodococcus erythropolis SK121] gi|229323145|gb|EEN88913.1| transcription termination factor Rho [Rhodococcus erythropolis SK121] Length=718 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/390 (86%), Positives = 366/390 (94%), Gaps = 0/390 (0%) Query 211 DGAEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVT 270 D E E+REDDV+QPVAGILDVLDNYAFVRTSGYL GP+DVYVSMN++RKNG+RRGDA+T Sbjct 328 DSRETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAIT 387 Query 271 GAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTE 330 GAVRV ++GEQ +QRQKFNPLVR+D++NGG VE AKKRPEF KLTPLYPNQRLRLET Sbjct 388 GAVRVSRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRPEFNKLTPLYPNQRLRLETEQH 447 Query 331 RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 390 LTTRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANA+ NNPEC+LMV+LVDERPEE Sbjct 448 ILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVATNNPECYLMVILVDERPEE 507 Query 391 VTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 450 VTDMQRSVKGEVI+STFDRPP DHT+VAELAIERAKRLVE GKDVVVLLDSITRLGRAYN Sbjct 508 VTDMQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYN 567 Query 451 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 510 N+SPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEF Sbjct 568 NSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEF 627 Query 511 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 570 KGTGNAELKLDRKIAERRVFPAVDVNPS TRKDELLLSPDE A++HKLRRVLSGLDSHQA Sbjct 628 KGTGNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEAAVLHKLRRVLSGLDSHQA 687 Query 571 IDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 IDLL+ +L+K+KNN EFL+QVSKT PG++D Sbjct 688 IDLLIDRLKKSKNNLEFLMQVSKTAPGAID 717 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/48 (63%), Positives = 34/48 (71%), Gaps = 5/48 (10%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQ---ANGAPA 81 L+ MVL ELR LA G+KGTSGMRK +LIAAI+E RQ A APA Sbjct 47 LSGMVLTELRTLAGELGIKGTSGMRKGDLIAAIKE--RQGGSAKAAPA 92 >gi|226307406|ref|YP_002767366.1| transcription termination factor Rho [Rhodococcus erythropolis PR4] gi|226186523|dbj|BAH34627.1| transcription termination factor Rho [Rhodococcus erythropolis PR4] Length=712 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/390 (86%), Positives = 366/390 (94%), Gaps = 0/390 (0%) Query 211 DGAEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVT 270 D E E+REDDV+QPVAGILDVLDNYAFVRTSGYL GP+DVYVSMN++RKNG+RRGDA+T Sbjct 322 DSRETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAIT 381 Query 271 GAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTE 330 GAVRV ++GEQ +QRQKFNPLVR+D++NGG VE AKKRPEF KLTPLYPNQRLRLET Sbjct 382 GAVRVSRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRPEFNKLTPLYPNQRLRLETEQH 441 Query 331 RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 390 LTTRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANA+ NNPEC+LMV+LVDERPEE Sbjct 442 ILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVATNNPECYLMVILVDERPEE 501 Query 391 VTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 450 VTDMQRSVKGEVI+STFDRPP DHT+VAELAIERAKRLVE GKDVVVLLDSITRLGRAYN Sbjct 502 VTDMQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYN 561 Query 451 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 510 N+SPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEF Sbjct 562 NSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEF 621 Query 511 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 570 KGTGNAELKLDRKIAERRVFPAVDVNPS TRKDELLLSPDE A++HKLRRVLSGLDSHQA Sbjct 622 KGTGNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEAAVLHKLRRVLSGLDSHQA 681 Query 571 IDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 IDLL+ +L+K+KNN EFL+QVSKT PG++D Sbjct 682 IDLLIDRLKKSKNNLEFLMQVSKTAPGAID 711 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/48 (63%), Positives = 34/48 (71%), Gaps = 5/48 (10%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQ---ANGAPA 81 L+ MVL ELR LA G+KGTSGMRK +LIAAI+E RQ A APA Sbjct 47 LSGMVLTELRTLAGELGIKGTSGMRKGDLIAAIKE--RQGGSAKAAPA 92 >gi|312139164|ref|YP_004006500.1| transcription termination factor rho [Rhodococcus equi 103S] gi|311888503|emb|CBH47815.1| transcription termination factor Rho [Rhodococcus equi 103S] Length=676 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/384 (88%), Positives = 366/384 (96%), Gaps = 0/384 (0%) Query 216 ELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRV 275 E+REDDV+QPVAGILDVLDNYAFVRTSGYL GP+DVYVSMN+VRKNG+RRGDA+TGAVRV Sbjct 291 EIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAVRV 350 Query 276 PKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTR 335 P+EGEQ NQRQKFNPLVRLD++NGG VE A+KRPEF KLTPLYPNQRLRLET+ LTTR Sbjct 351 PREGEQSNQRQKFNPLVRLDTVNGGEVEAARKRPEFNKLTPLYPNQRLRLETTPNILTTR 410 Query 336 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQ 395 VIDL+MPIGKGQRALIVSPPKAGKTT+LQDIANAI+ NNPEC+LMVVLVDERPEEVTDMQ Sbjct 411 VIDLVMPIGKGQRALIVSPPKAGKTTVLQDIANAISVNNPECYLMVVLVDERPEEVTDMQ 470 Query 396 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 455 RSV GEVIASTFDRPP+DHTSVAELAIERAKRLVE G+DVVVLLDSITRLGRAYNN+SPA Sbjct 471 RSVNGEVIASTFDRPPADHTSVAELAIERAKRLVEAGRDVVVLLDSITRLGRAYNNSSPA 530 Query 456 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 515 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIA+A+VETGSTGDTVIFEEFKGTGN Sbjct 531 SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEFKGTGN 590 Query 516 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 575 AELKLDRKIAERRVFPAVDVN S TRKDELL+SPDEFAIVHKLRRVLSGLD+HQAIDLL+ Sbjct 591 AELKLDRKIAERRVFPAVDVNLSSTRKDELLMSPDEFAIVHKLRRVLSGLDTHQAIDLLV 650 Query 576 SQLRKTKNNYEFLVQVSKTTPGSM 599 +L+K+++N EFL+ VSKT PGS+ Sbjct 651 DRLKKSQSNVEFLMTVSKTAPGSL 674 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/42 (65%), Positives = 31/42 (74%), Gaps = 2/42 (4%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANG 78 L+ MVL ELR LA G+KGTSGMRK +LIAAI+E RQ G Sbjct 54 LSGMVLAELRTLAGELGIKGTSGMRKGDLIAAIKE--RQGGG 93 >gi|325673531|ref|ZP_08153222.1| transcription termination factor Rho [Rhodococcus equi ATCC 33707] gi|325555552|gb|EGD25223.1| transcription termination factor Rho [Rhodococcus equi ATCC 33707] Length=689 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/384 (88%), Positives = 366/384 (96%), Gaps = 0/384 (0%) Query 216 ELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRV 275 E+REDDV+QPVAGILDVLDNYAFVRTSGYL GP+DVYVSMN+VRKNG+RRGDA+TGAVRV Sbjct 304 EIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAVRV 363 Query 276 PKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTR 335 P+EGEQ NQRQKFNPLVRLD++NGG VE A+KRPEF KLTPLYPNQRLRLET+ LTTR Sbjct 364 PREGEQSNQRQKFNPLVRLDTVNGGEVEAARKRPEFNKLTPLYPNQRLRLETTPNILTTR 423 Query 336 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQ 395 VIDL+MPIGKGQRALIVSPPKAGKTT+LQDIANAI+ NNPEC+LMVVLVDERPEEVTDMQ Sbjct 424 VIDLVMPIGKGQRALIVSPPKAGKTTVLQDIANAISVNNPECYLMVVLVDERPEEVTDMQ 483 Query 396 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 455 RSV GEVIASTFDRPP+DHTSVAELAIERAKRLVE G+DVVVLLDSITRLGRAYNN+SPA Sbjct 484 RSVNGEVIASTFDRPPADHTSVAELAIERAKRLVEAGRDVVVLLDSITRLGRAYNNSSPA 543 Query 456 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 515 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIA+A+VETGSTGDTVIFEEFKGTGN Sbjct 544 SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEFKGTGN 603 Query 516 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 575 AELKLDRKIAERRVFPAVDVN S TRKDELL+SPDEFAIVHKLRRVLSGLD+HQAIDLL+ Sbjct 604 AELKLDRKIAERRVFPAVDVNLSSTRKDELLMSPDEFAIVHKLRRVLSGLDTHQAIDLLV 663 Query 576 SQLRKTKNNYEFLVQVSKTTPGSM 599 +L+K+++N EFL+ VSKT PGS+ Sbjct 664 DRLKKSQSNVEFLMTVSKTAPGSL 687 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/96 (43%), Positives = 48/96 (50%), Gaps = 21/96 (21%) Query 1 VTDTDLI------------------TAGESTDGKPSDAAATDPPDLNADEPAGSLATMVL 42 +TDTDLI +A S G A A +A AG L+ MVL Sbjct 1 MTDTDLIATPVQESPAESAGARAGNSAQTSDAGSREGAVAASTKRADARRGAG-LSGMVL 59 Query 43 PELRALANRAGVKGTSGMRKNELIAAIEEIRRQANG 78 ELR LA G+KGTSGMRK +LIAAI+E RQ G Sbjct 60 AELRTLAGELGIKGTSGMRKGDLIAAIKE--RQGGG 93 >gi|326382079|ref|ZP_08203772.1| transcription termination factor Rho [Gordonia neofelifaecis NRRL B-59395] gi|326199505|gb|EGD56686.1| transcription termination factor Rho [Gordonia neofelifaecis NRRL B-59395] Length=638 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/393 (86%), Positives = 365/393 (93%), Gaps = 1/393 (0%) Query 211 DGAEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVT 270 + E ++ E DV+ PVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVR+NG+RRGDA+T Sbjct 246 NAGEPQVNEGDVLAPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRRNGLRRGDAIT 305 Query 271 GAVRVPKEGEQPN-QRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETST 329 GAV+VP++GE PN QRQKFNPLVRLD++NG +E A+KRP+F KLTPLYPNQRLRLET+ Sbjct 306 GAVKVPRDGENPNNQRQKFNPLVRLDTVNGTDIESARKRPDFTKLTPLYPNQRLRLETTP 365 Query 330 ERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPE 389 ERL+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT NNPECHLMVVLVDERPE Sbjct 366 ERLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPE 425 Query 390 EVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAY 449 EVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVE G DVVVLLDSITRLGRAY Sbjct 426 EVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVENGMDVVVLLDSITRLGRAY 485 Query 450 NNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEE 509 NNASPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIA+A+VETGSTGDTVIFEE Sbjct 486 NNASPASGRILSGGVDSQALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEE 545 Query 510 FKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQ 569 FKGTGNAELKLDRKI+ERRVFPAVDVN S TRKDELLLSPDEFAIVHKLRR+L+GLDS Sbjct 546 FKGTGNAELKLDRKISERRVFPAVDVNLSSTRKDELLLSPDEFAIVHKLRRLLAGLDSQA 605 Query 570 AIDLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 AIDLL++QL+KT++N EFL+QVSK PG M+ D Sbjct 606 AIDLLVAQLKKTRSNVEFLMQVSKNAPGVMNDD 638 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 51/168 (31%), Positives = 73/168 (44%), Gaps = 39/168 (23%) Query 40 MVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGD------ 93 M+LPELR LA G+KGTSGMRK +LI I Q GA + A +K Sbjct 1 MLLPELRGLAAELGIKGTSGMRKGDLIDVIRA--HQHGGATGSSKKAAGAEKSSTEKPAA 58 Query 94 -----------RPPSSEAPATQGEQTPTEQIDSQSQQV-RPERRSATREAGPSGSGERAG 141 + P++E PA + +T Q+ V +P +A P+ G A Sbjct 59 APKAAAEKVVAQSPATEKPADKPAETRAADRTVQATAVEKP-------DAAPANKGGAAK 111 Query 142 TAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQQARGDEDGE 189 +A +D + G RG + DQ D++ + QARGD+ E Sbjct 112 SADNDRADENG---------RGGNRNADQNRDEKPA---QARGDQQRE 147 >gi|296138960|ref|YP_003646203.1| transcription termination factor Rho [Tsukamurella paurometabola DSM 20162] gi|296027094|gb|ADG77864.1| transcription termination factor Rho [Tsukamurella paurometabola DSM 20162] Length=653 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/666 (60%), Positives = 463/666 (70%), Gaps = 90/666 (13%) Query 1 VTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGS-LATMVLPELRALANRAGVKGTSG 59 +T+TD+ T+ P AA+T ADE S L MVL ELR +A G+KG SG Sbjct 1 MTETDVTTS-------PDTAASTSASAQRADERRRSGLNGMVLAELRTIAGDLGIKGISG 53 Query 60 MRKNELIAAIEEIRRQANGAPAVDRS-------------------AQEHDKGDRPP---- 96 +RK +LIAAI +Q +GA ++ E K + P Sbjct 54 LRKGDLIAAITA--QQGSGAAPTSKAEKPAKTAPPKAAAPKADAPKAEAAKVEAPKAEAT 111 Query 97 SSEAPATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGS--GERAGTAADDTD----NR 150 ++EAP T+ + + D+ P+ + +A P+ + + A +D D R Sbjct 112 TAEAPKTEAPKNDAPKNDA------PKNDAPKNDAAPADAPKDDAKSGAKNDGDQPQQQR 165 Query 151 QGGQQDAKTEERGTDAGGDQGGDQQASGGQQARGDED----------------------- 187 +GG+++ + + RG +A G D+Q GG Q R D D Sbjct 166 EGGRRE-RNQRRGQNADGQNQNDRQ--GGDQNRPDRDQNRQQGQKNNNNNGPNNRNQNNG 222 Query 188 ----GEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVRTSG 243 G+ + R R RR R DG E ++ EDDV+QPVAGILDVLDNYAFVRTSG Sbjct 223 PDDDGDGQGRRGRRFRERRRGRDRNQNDG-EPQVSEDDVLQPVAGILDVLDNYAFVRTSG 281 Query 244 YLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQ--------------PNQRQKFN 289 Y+ GP+DVYVSMNMVR+NG+RRGDA+ GAV++P++GE + RQKFN Sbjct 282 YIAGPNDVYVSMNMVRRNGLRRGDAIVGAVKMPRDGESNDGGNQGGGGGRGNQSNRQKFN 341 Query 290 PLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRA 349 PLVRLDS+NG V+ AK RPEF KLTPLYPNQRLRLET+ LTTRVIDLIMPIGKGQRA Sbjct 342 PLVRLDSVNGQDVDSAKNRPEFNKLTPLYPNQRLRLETAQNILTTRVIDLIMPIGKGQRA 401 Query 350 LIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDR 409 LI +PPKAGKTTI+QDIANAI NNPEC+LMVVLVDERPEEVTDMQRS KGEVI+STFDR Sbjct 402 LISAPPKAGKTTIMQDIANAIATNNPECYLMVVLVDERPEEVTDMQRSTKGEVISSTFDR 461 Query 410 PPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTAL 469 PPSDHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+SPASGRILSGG+DSTAL Sbjct 462 PPSDHTSVAELAIERAKRLVEGGKDVVVLLDSITRLGRAYNNSSPASGRILSGGIDSTAL 521 Query 470 YPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRV 529 YPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKI+ERR+ Sbjct 522 YPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKISERRI 581 Query 530 FPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLV 589 FPAVDV+PS TRKDELLL+PDE AIVHKLRR+LSGLDS QAI+LL+SQL+KT+NN EFL+ Sbjct 582 FPAVDVHPSSTRKDELLLAPDEAAIVHKLRRLLSGLDSQQAIELLISQLKKTQNNIEFLM 641 Query 590 QVSKTT 595 V K + Sbjct 642 MVQKNS 647 >gi|317506164|ref|ZP_07963985.1| transcription termination factor Rho [Segniliparus rugosus ATCC BAA-974] gi|316255509|gb|EFV14758.1| transcription termination factor Rho [Segniliparus rugosus ATCC BAA-974] Length=611 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/389 (85%), Positives = 361/389 (93%), Gaps = 4/389 (1%) Query 218 REDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPK 277 REDDV+QPVAGILD++DNYAF+RTSGY+PG DVYVSMNM+RK G+RRGDA+ GAV+ PK Sbjct 222 REDDVLQPVAGILDLMDNYAFLRTSGYVPGQGDVYVSMNMIRKYGLRRGDAIIGAVKAPK 281 Query 278 E----GEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLT 333 E G+ NQRQKFNPLVR+DS++G + A +RPEF KLTPLYPNQRLRLET+ +RL+ Sbjct 282 ESGGQGDGGNQRQKFNPLVRIDSVSGIEPDRALRRPEFSKLTPLYPNQRLRLETTPDRLS 341 Query 334 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 393 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPEC+LMVVLVDERPEEVTD Sbjct 342 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITQNNPECYLMVVLVDERPEEVTD 401 Query 394 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 453 MQRSV+GEVIASTFDRPP+DHT VAELAIERAKRLVE G+DVVVLLDSITRLGRAYNNAS Sbjct 402 MQRSVRGEVIASTFDRPPADHTMVAELAIERAKRLVELGRDVVVLLDSITRLGRAYNNAS 461 Query 454 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 513 PASGRILSGGVD+TALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKGT Sbjct 462 PASGRILSGGVDATALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGT 521 Query 514 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 573 GNAELKLDRK+AERRVFPAVDV+PSGTRKDELLL DEF +VHKLRR+LSGLD+HQAIDL Sbjct 522 GNAELKLDRKVAERRVFPAVDVHPSGTRKDELLLGSDEFQVVHKLRRLLSGLDTHQAIDL 581 Query 574 LMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 L+SQLRKTK+N EFLVQVSKT PG +D D Sbjct 582 LISQLRKTKSNVEFLVQVSKTAPGQLDQD 610 >gi|257056966|ref|YP_003134798.1| transcription termination factor Rho [Saccharomonospora viridis DSM 43017] gi|256586838|gb|ACU97971.1| transcription termination factor Rho [Saccharomonospora viridis DSM 43017] Length=613 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/384 (85%), Positives = 353/384 (92%), Gaps = 2/384 (0%) Query 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 E E+REDDV+ PVAGILDVL+NYAFVRTSGYLPGP+DVYVS+++VRK G+RRGDA+TG V Sbjct 228 ETEIREDDVLLPVAGILDVLENYAFVRTSGYLPGPNDVYVSLSLVRKYGLRRGDAITGVV 287 Query 274 RVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLT 333 + P+EGEQ QRQKFNPLVR+DS+NG E AKKRPEF KLTPLYPN+RLRLET+ +LT Sbjct 288 KQPREGEQ--QRQKFNPLVRVDSVNGLDPEVAKKRPEFHKLTPLYPNERLRLETTPNKLT 345 Query 334 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 393 TRVIDL+MP+GKGQRALIVSPPKAGKTTI+QDIANAIT NNPECHLMVVLVDERPEEVTD Sbjct 346 TRVIDLVMPVGKGQRALIVSPPKAGKTTIMQDIANAITTNNPECHLMVVLVDERPEEVTD 405 Query 394 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 453 MQRSVKGEVIASTFDRPPSDHTSVAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct 406 MQRSVKGEVIASTFDRPPSDHTSVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAA 465 Query 454 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 513 PASGRILSGGVDSTAL+PPKRFLGAARNIE GGSLTI ATAMVETGSTGDTVIFEEFKGT Sbjct 466 PASGRILSGGVDSTALFPPKRFLGAARNIEGGGSLTIFATAMVETGSTGDTVIFEEFKGT 525 Query 514 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 573 GNAELKLDRKIAERRVFPAVDVNPSGTRK+ELLLSPDE A+ HKL RVL LDS QAIDL Sbjct 526 GNAELKLDRKIAERRVFPAVDVNPSGTRKEELLLSPDELAVTHKLHRVLHALDSQQAIDL 585 Query 574 LMSQLRKTKNNYEFLVQVSKTTPG 597 L+ +LRKTK N EFL+QVSK PG Sbjct 586 LLDRLRKTKTNAEFLMQVSKNMPG 609 >gi|296393114|ref|YP_003657998.1| transcription termination factor Rho [Segniliparus rotundus DSM 44985] gi|296180261|gb|ADG97167.1| transcription termination factor Rho [Segniliparus rotundus DSM 44985] Length=614 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/395 (83%), Positives = 360/395 (92%), Gaps = 5/395 (1%) Query 213 AEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGA 272 A A REDDV+QPVAGILD++DNYAF+RTSGY+PG DVYVSMNM+RK G+RRGDA+ GA Sbjct 219 AVAAPREDDVLQPVAGILDLMDNYAFLRTSGYVPGQGDVYVSMNMIRKYGLRRGDAIVGA 278 Query 273 VRVPKEGEQP-----NQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET 327 V+ PK+ Q NQRQKFNPLVR+DS++G E A +RP+F KLTPLYPNQRLRLET Sbjct 279 VKAPKDSGQSGDGGNNQRQKFNPLVRIDSVSGIEPERALRRPDFTKLTPLYPNQRLRLET 338 Query 328 STERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDER 387 + ++L+TRVIDLIMPIGKGQRALIV+PPKAGKTTILQDIANAI +NNPEC+LMVVLVDER Sbjct 339 TPDKLSTRVIDLIMPIGKGQRALIVAPPKAGKTTILQDIANAIAQNNPECYLMVVLVDER 398 Query 388 PEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGR 447 PEEVTDMQRSV+GEVIASTFDRPPSDHT VAELAIERAKRLVE G+DVVVLLDSITRLGR Sbjct 399 PEEVTDMQRSVRGEVIASTFDRPPSDHTMVAELAIERAKRLVELGRDVVVLLDSITRLGR 458 Query 448 AYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIF 507 AYNNASPASGRILSGGVD+TALYPPKRFLGAARNIE GGSLTIIA+A+VETGSTGDTVI+ Sbjct 459 AYNNASPASGRILSGGVDATALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIY 518 Query 508 EEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDS 567 EEFKGTGNAELKLDRK+AERRVFPAVDVNPS TRKDELLL DEF +VHKLRR+LSGLD+ Sbjct 519 EEFKGTGNAELKLDRKVAERRVFPAVDVNPSNTRKDELLLGSDEFQVVHKLRRLLSGLDT 578 Query 568 HQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 HQAIDLL+SQLRKTK+N EFLVQVSKT PG +D D Sbjct 579 HQAIDLLISQLRKTKSNVEFLVQVSKTAPGQLDQD 613 >gi|319948469|ref|ZP_08022605.1| transcription termination factor Rho [Dietzia cinnamea P4] gi|319437889|gb|EFV92873.1| transcription termination factor Rho [Dietzia cinnamea P4] Length=585 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/566 (65%), Positives = 407/566 (72%), Gaps = 75/566 (13%) Query 90 DKGDRPPSSEAPATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGSGERAGTAADDTDN 149 D GD P+ + +QG D ++Q R R R G G++ DT + Sbjct 29 DGGDSAPAGDEGGSQG--------DGRAQGERSRREDGNRAGQRQGRGQQ--NRDQDTRD 78 Query 150 RQGGQQDAKTEERGTDAG-GDQGGDQQASG-----GQQARGDEDGEARQGRRGRRF---- 199 +QGG+ D RG G QGG G GQ R D+ G QG +G R Sbjct 79 QQGGRND-----RGNQGGRNSQGGRNNQDGRNNQDGQGNRNDQGGRNDQGGQGNRSDQGS 133 Query 200 RDRRRRGERSGDG-----------------------------AEAELREDDVVQPVAGIL 230 +D G R GDG E E+REDDV+QPVAGIL Sbjct 134 QDGGDNGPR-GDGQNRDDDGGGRGRRGRRRRERNRGGNRPAEGETEVREDDVLQPVAGIL 192 Query 231 DVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQ--------- 281 DVLDNYAFVRTSGYL G +DVYVSMNM+R+ G+RRGDA+TGAV++P++G+ Sbjct 193 DVLDNYAFVRTSGYLAGNNDVYVSMNMIRRYGLRRGDAITGAVKMPRDGQSDGQHDGPGG 252 Query 282 -----------PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTE 330 R KFNPL R+D++NG + A++RPEF KLTPLYPNQRLRLET Sbjct 253 GQGGGRGGGQGGKNRAKFNPLARIDTVNGSPADQARQRPEFSKLTPLYPNQRLRLETEKN 312 Query 331 RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 390 ++TRVIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI NNPECHLMVVLVDERPEE Sbjct 313 IISTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECHLMVVLVDERPEE 372 Query 391 VTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 450 VTDMQRSVKGEVIASTFDRPPSDHT VAELAIERAKRLVE G+DVVVLLDSITRLGRAYN Sbjct 373 VTDMQRSVKGEVIASTFDRPPSDHTQVAELAIERAKRLVELGQDVVVLLDSITRLGRAYN 432 Query 451 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 510 N+SPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGS GDTVIFEEF Sbjct 433 NSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEF 492 Query 511 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 570 KGTGNAELKLDR+IAERRVFPAVDV PSGTRK+ELL+SP+E I+HKLRRVLSGLD+HQA Sbjct 493 KGTGNAELKLDRRIAERRVFPAVDVGPSGTRKEELLMSPEEAGIMHKLRRVLSGLDTHQA 552 Query 571 IDLLMSQLRKTKNNYEFLVQVSKTTP 596 IDLLMSQLRKT NYEFL+QV+KTTP Sbjct 553 IDLLMSQLRKTNTNYEFLLQVAKTTP 578 >gi|300789611|ref|YP_003769902.1| transcription termination factor Rho [Amycolatopsis mediterranei U32] gi|299799125|gb|ADJ49500.1| transcription termination factor Rho [Amycolatopsis mediterranei U32] gi|340531267|gb|AEK46472.1| transcription termination factor Rho [Amycolatopsis mediterranei S699] Length=667 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/389 (83%), Positives = 354/389 (92%), Gaps = 2/389 (0%) Query 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 + E+R+DDV+ PVAGILDVLDNYAFVRTSGYL GP+DVYVS+++VRK G+RRGDA+TG V Sbjct 281 DTEIRDDDVLLPVAGILDVLDNYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDAITGVV 340 Query 274 RVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLT 333 R P++GEQ QRQKFNPLVR+DSING ++AK+RP+F KLTPLYPN+RLRLET + +LT Sbjct 341 RQPRDGEQ--QRQKFNPLVRVDSINGLEPDEAKRRPDFTKLTPLYPNERLRLETESHKLT 398 Query 334 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 393 TRVIDLIMP+GKGQRALIVSPPKAGKTTI+QDIANAI+ NNPECHLMVVLVDERPEEVTD Sbjct 399 TRVIDLIMPVGKGQRALIVSPPKAGKTTIMQDIANAISTNNPECHLMVVLVDERPEEVTD 458 Query 394 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 453 MQRSVKGEVIASTFDRPP+DHTSVAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct 459 MQRSVKGEVIASTFDRPPADHTSVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAA 518 Query 454 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 513 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTI ATAMVETGST DTVIFEEFKGT Sbjct 519 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIFATAMVETGSTMDTVIFEEFKGT 578 Query 514 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 573 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL+PDE A+ KL RVL LDS QAIDL Sbjct 579 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLNPDELAVTVKLSRVLHALDSQQAIDL 638 Query 574 LMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 L+S+LRKTK N EFL+QVSKT G + D Sbjct 639 LISRLRKTKTNVEFLMQVSKTALGGGEDD 667 Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust. Identities = 29/72 (41%), Positives = 39/72 (55%), Gaps = 8/72 (11%) Query 1 VTDTDLIT-AGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSG 59 +++TDL++ G T G S+ A P G L + ELR+LA GV T+G Sbjct 1 MSNTDLLSDVGSDTAG--SNGTAPAP-----KRAVGGLTGKTVAELRSLAGELGVGETTG 53 Query 60 MRKNELIAAIEE 71 MRK +LIAAI E Sbjct 54 MRKGDLIAAIRE 65 >gi|291007812|ref|ZP_06565785.1| transcription termination factor Rho [Saccharopolyspora erythraea NRRL 2338] Length=648 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/619 (61%), Positives = 442/619 (72%), Gaps = 70/619 (11%) Query 35 GSLATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDR 94 G L+ MVL ELR LA G++ T+G+RK +LIAAI+E RQ AP RS ++ +G Sbjct 40 GGLSGMVLAELRQLAGELGIE-TTGLRKGDLIAAIKE--RQGGAAPQRSRSTKKPSQG-- 94 Query 95 PPSSEAPATQGEQTPTEQIDSQSQQVRPERRS--ATREAGPS-GSGER---AGTAADD-- 146 + ++ + Q ++ D+ S+Q E+ + A A PS G G R A + DD Sbjct 95 --AEDSAQAKAHQPALDESDADSKQRDTEQAAEPAPNGAAPSRGRGRRQQAADASGDDES 152 Query 147 -----------------TDNRQGGQQDAKTEERG--TDAGGDQG-GDQQASGGQQARGDE 186 ++ +GGQ + ERG D G Q GD+Q G +Q RGD Sbjct 153 RRSNNRRRRSSGRAGGAQEDERGGQGGQERSERGERQDRGDRQDRGDRQDRGDRQDRGD- 211 Query 187 DGEARQGRRGRRFRDRRRRGE----------------------------RSGDGAEAELR 218 RQ R R+ R+ R+ + G G E E+R Sbjct 212 ----RQDRGERQDRNNARQQQDNRQDDGDEDGGRRRGRRFRDRRRNRGRAEGGGGEPEVR 267 Query 219 EDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKE 278 EDDV+ PVAGILDVL+NYAFVRTSGYL GP+DVYVS+++VRK G+RRGDA+ G +R P+E Sbjct 268 EDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDAIKGVIRQPRE 327 Query 279 GEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVID 338 GEQ QRQKFNPLVR+D+ING + AK R EF KLTPLYPN+RLRLET LT R+ID Sbjct 328 GEQ--QRQKFNPLVRVDAINGLEPDAAKGRSEFHKLTPLYPNERLRLETEPHNLTGRIID 385 Query 339 LIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSV 398 L+MP+GKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVL DERPEEVTDMQRSV Sbjct 386 LVMPVGKGQRALIVSPPKAGKTMVLQAIANAITTNNPECHLMVVLADERPEEVTDMQRSV 445 Query 399 KGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGR 458 KGEVIASTFDRPPSDHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+PASGR Sbjct 446 KGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGR 505 Query 459 ILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAEL 518 ILSGGVDSTALYPPKRFLGAARNIE GGSLTI ATA+VETGST DTVIFEEFKGTGNAEL Sbjct 506 ILSGGVDSTALYPPKRFLGAARNIENGGSLTIFATALVETGSTMDTVIFEEFKGTGNAEL 565 Query 519 KLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQL 578 KLDRK+A++R+FPAVDV+ S TRKDE+LLSPDE A+ HKLRRVL+ LD+ QA++LL +L Sbjct 566 KLDRKLADKRLFPAVDVDASSTRKDEILLSPDELAVTHKLRRVLAALDAQQALELLQDRL 625 Query 579 RKTKNNYEFLVQVSKTTPG 597 RK++ N EFL+QV+KTTPG Sbjct 626 RKSRTNIEFLMQVAKTTPG 644 >gi|134102731|ref|YP_001108392.1| transcription termination factor Rho [Saccharopolyspora erythraea NRRL 2338] gi|133915354|emb|CAM05467.1| putative transcription termination factor Rho [Saccharopolyspora erythraea NRRL 2338] Length=642 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/619 (61%), Positives = 442/619 (72%), Gaps = 70/619 (11%) Query 35 GSLATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDR 94 G L+ MVL ELR LA G++ T+G+RK +LIAAI+E RQ AP RS ++ +G Sbjct 34 GGLSGMVLAELRQLAGELGIE-TTGLRKGDLIAAIKE--RQGGAAPQRSRSTKKPSQG-- 88 Query 95 PPSSEAPATQGEQTPTEQIDSQSQQVRPERRS--ATREAGPS-GSGER---AGTAADD-- 146 + ++ + Q ++ D+ S+Q E+ + A A PS G G R A + DD Sbjct 89 --AEDSAQAKAHQPALDESDADSKQRDTEQAAEPAPNGAAPSRGRGRRQQAADASGDDES 146 Query 147 -----------------TDNRQGGQQDAKTEERG--TDAGGDQG-GDQQASGGQQARGDE 186 ++ +GGQ + ERG D G Q GD+Q G +Q RGD Sbjct 147 RRSNNRRRRSSGRAGGAQEDERGGQGGQERSERGERQDRGDRQDRGDRQDRGDRQDRGD- 205 Query 187 DGEARQGRRGRRFRDRRRRGE----------------------------RSGDGAEAELR 218 RQ R R+ R+ R+ + G G E E+R Sbjct 206 ----RQDRGERQDRNNARQQQDNRQDDGDEDGGRRRGRRFRDRRRNRGRAEGGGGEPEVR 261 Query 219 EDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKE 278 EDDV+ PVAGILDVL+NYAFVRTSGYL GP+DVYVS+++VRK G+RRGDA+ G +R P+E Sbjct 262 EDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDAIKGVIRQPRE 321 Query 279 GEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVID 338 GEQ QRQKFNPLVR+D+ING + AK R EF KLTPLYPN+RLRLET LT R+ID Sbjct 322 GEQ--QRQKFNPLVRVDAINGLEPDAAKGRSEFHKLTPLYPNERLRLETEPHNLTGRIID 379 Query 339 LIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSV 398 L+MP+GKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVL DERPEEVTDMQRSV Sbjct 380 LVMPVGKGQRALIVSPPKAGKTMVLQAIANAITTNNPECHLMVVLADERPEEVTDMQRSV 439 Query 399 KGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGR 458 KGEVIASTFDRPPSDHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+PASGR Sbjct 440 KGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGR 499 Query 459 ILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAEL 518 ILSGGVDSTALYPPKRFLGAARNIE GGSLTI ATA+VETGST DTVIFEEFKGTGNAEL Sbjct 500 ILSGGVDSTALYPPKRFLGAARNIENGGSLTIFATALVETGSTMDTVIFEEFKGTGNAEL 559 Query 519 KLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQL 578 KLDRK+A++R+FPAVDV+ S TRKDE+LLSPDE A+ HKLRRVL+ LD+ QA++LL +L Sbjct 560 KLDRKLADKRLFPAVDVDASSTRKDEILLSPDELAVTHKLRRVLAALDAQQALELLQDRL 619 Query 579 RKTKNNYEFLVQVSKTTPG 597 RK++ N EFL+QV+KTTPG Sbjct 620 RKSRTNIEFLMQVAKTTPG 638 >gi|331695517|ref|YP_004331756.1| transcription termination factor Rho [Pseudonocardia dioxanivorans CB1190] gi|326950206|gb|AEA23903.1| transcription termination factor Rho [Pseudonocardia dioxanivorans CB1190] Length=793 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/384 (81%), Positives = 349/384 (91%), Gaps = 2/384 (0%) Query 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 + E+R+DDV+ PVAGI+D+LDNYAFVRT+GYL GP+DVYVS++MVRK G+RRGDA+TGAV Sbjct 408 DTEVRDDDVLLPVAGIVDILDNYAFVRTTGYLSGPNDVYVSLSMVRKYGLRRGDAITGAV 467 Query 274 RVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLT 333 R P+EGEQ QRQKFNPLVR+D++NG E AK RPEF KLTPLYPN+RLRLET +LT Sbjct 468 RQPREGEQ--QRQKFNPLVRVDTVNGRDPEAAKARPEFTKLTPLYPNERLRLETEPSKLT 525 Query 334 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 393 TRVIDL+MP+GKGQRALIVSPPKAGKT +LQ IANAIT NNPE HLMVVLVDERPEEVTD Sbjct 526 TRVIDLVMPVGKGQRALIVSPPKAGKTMVLQSIANAITTNNPEVHLMVVLVDERPEEVTD 585 Query 394 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 453 MQRSVKGEVIASTFDRPPSDHT+VAELAIERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct 586 MQRSVKGEVIASTFDRPPSDHTAVAELAIERAKRLVEMGHDVVVLLDSITRLGRAYNLAA 645 Query 454 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 513 PASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTI ATA+VETGST DTVIFEEFKGT Sbjct 646 PASGRILSGGVDSTALYPPKRFLGAARNIEDGGSLTIFATALVETGSTMDTVIFEEFKGT 705 Query 514 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 573 GNAELKLDRKIA++RVFPA+DV+ SGTRK+ELL+SPDEFA+ KLRRVL+ LD QAIDL Sbjct 706 GNAELKLDRKIADKRVFPAIDVDASGTRKEELLMSPDEFAVTVKLRRVLAALDDQQAIDL 765 Query 574 LMSQLRKTKNNYEFLVQVSKTTPG 597 ++ +LRKT+ N EFL+ V+K+TPG Sbjct 766 VLDRLRKTRTNIEFLMTVAKSTPG 789 Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/42 (60%), Positives = 30/42 (72%), Gaps = 2/42 (4%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANG 78 L+ MVL ELR LA + GT+GMRK +LIAAI+E RQA G Sbjct 18 LSGMVLAELRQLAGELDIPGTAGMRKGDLIAAIKE--RQAGG 57 >gi|330469862|ref|YP_004407605.1| transcription termination factor Rho [Verrucosispora maris AB-18-032] gi|328812833|gb|AEB47005.1| transcription termination factor Rho [Verrucosispora maris AB-18-032] Length=680 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/656 (56%), Positives = 438/656 (67%), Gaps = 104/656 (15%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDR------------ 84 L+ M+LPEL++LA G+ GT+ MRK ELI+AI E + A GAP Sbjct 33 LSAMLLPELQSLAASLGISGTARMRKGELISAITERQGSAAGAPRPRAEVAAAAAPAREE 92 Query 85 -SAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQ-----------------------SQQV 120 A+ + G+RP + A Q P ++++ Sbjct 93 VHAEVRETGERPEAGRRAAEQ----PAASVETEGRTRTRRTRATAVAEPRAEEAAAETGE 148 Query 121 RPERRSATREAGPSGSGERAGTAADDTDNRQG-----GQQDAKT---EERGTDAGGDQGG 172 R E R T A G GERA A+ T +R G G++ A+ ERG A + G Sbjct 149 RSEGR--TSRAAERG-GERAAERAERTADRSGERAERGERAAERGDRAERGDRAERAERG 205 Query 173 DQQASGGQQARGDEDGE-------ARQGRRGRRFRDRRRRGERSGDGAEAE--------- 216 D+ G + RG E GE +G RG R +R RG+R G E Sbjct 206 DRAERGERAERGAERGERAERGERTERGDRGERAAERGERGDRGERGQRTERDNNTDDDD 265 Query 217 -----------------------------------LREDDVVQPVAGILDVLDNYAFVRT 241 + EDDV+ PVAGI+DVLDNYAFVRT Sbjct 266 ENGGRRSRRSRFRDRRRGRNERGESGGEGGGREPQVGEDDVLVPVAGIVDVLDNYAFVRT 325 Query 242 SGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGGS 301 +GYL GP+DVYVSM+ ++K G+RRGDA+TGAVR ++GEQ +R K+NPLVRLD+ING Sbjct 326 TGYLAGPNDVYVSMSQIKKYGLRRGDAITGAVRAARDGEQ--RRDKYNPLVRLDTINGME 383 Query 302 VEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKTT 361 ++AK+RPEF KLTPLYP +RLRLET LTTRVIDL+MPIGKGQRALIVSPPKAGKT Sbjct 384 PDEAKRRPEFYKLTPLYPQERLRLETEPHILTTRVIDLVMPIGKGQRALIVSPPKAGKTM 443 Query 362 ILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELA 421 +LQ IANAIT NNPECHLMVVLVDERPEEVTDMQRSVKGEVIA+TFDRPP DHT+VAELA Sbjct 444 VLQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAATFDRPPQDHTTVAELA 503 Query 422 IERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARN 481 IERAKRLVE G DVVVLLDS+TRLGR+YN A+PASGRI+SGG+DSTALYPPKRFLGAARN Sbjct 504 IERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPASGRIMSGGIDSTALYPPKRFLGAARN 563 Query 482 IEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTR 541 IE GGSLTI+ATA+VETGS DTVIFEEFKGTGNAELKLDRKIA++R FPAVDV+ SGTR Sbjct 564 IENGGSLTILATALVETGSMADTVIFEEFKGTGNAELKLDRKIADKRTFPAVDVSASGTR 623 Query 542 KDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPG 597 K+E+LL+P+E AIVHKLR+VL LDS ++DLL+ +L++++ N EFL+Q++K+TPG Sbjct 624 KEEILLAPEELAIVHKLRKVLHSLDSQASLDLLLDRLKQSRTNIEFLMQIAKSTPG 679 >gi|325002818|ref|ZP_08123930.1| transcription termination factor Rho [Pseudonocardia sp. P1] Length=625 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/384 (81%), Positives = 350/384 (92%), Gaps = 2/384 (0%) Query 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 + E+R+DDV+ PVAGI+D+LDNYAFVRT+GYL GP DVYVSM+MVRKNG+RRGDA+TGAV Sbjct 240 DTEIRDDDVLLPVAGIVDILDNYAFVRTTGYLSGPTDVYVSMSMVRKNGLRRGDAITGAV 299 Query 274 RVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLT 333 R P+EGEQ QRQKFNPLVR+D+ING E A++R EF KLTPLYPN+RLRLET +LT Sbjct 300 RQPREGEQ--QRQKFNPLVRVDTINGRDPESARQRAEFTKLTPLYPNERLRLETDPTQLT 357 Query 334 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 393 TRVIDL+MP+GKGQRALIVSPPKAGKTTI+Q+IANAIT NNPECHLMVVLVDERPEEVTD Sbjct 358 TRVIDLVMPVGKGQRALIVSPPKAGKTTIMQNIANAITTNNPECHLMVVLVDERPEEVTD 417 Query 394 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 453 MQRSVKGEVIASTFDRPPSDHT+VAEL+IERAKRLVE G DVVVLLD+ITRLGRAYN A+ Sbjct 418 MQRSVKGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDNITRLGRAYNLAA 477 Query 454 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 513 PASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTI ATA+VETGST DTVIFEEFKGT Sbjct 478 PASGRILSGGVDSTALYPPKRFLGAARNIEDGGSLTIFATALVETGSTMDTVIFEEFKGT 537 Query 514 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 573 GNAELKLDRKIA++RVFPA+DV SGTRK+ELL+SPDE A++ KLRRVLS LD QAIDL Sbjct 538 GNAELKLDRKIADKRVFPAIDVGDSGTRKEELLMSPDEHAVMVKLRRVLSALDDQQAIDL 597 Query 574 LMSQLRKTKNNYEFLVQVSKTTPG 597 ++ +L+KTK N EFL+QV+K PG Sbjct 598 VLDRLKKTKTNIEFLMQVAKNAPG 621 >gi|256380146|ref|YP_003103806.1| transcription termination factor Rho [Actinosynnema mirum DSM 43827] gi|255924449|gb|ACU39960.1| transcription termination factor Rho [Actinosynnema mirum DSM 43827] Length=709 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/385 (80%), Positives = 351/385 (92%), Gaps = 2/385 (0%) Query 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 + E+R+DDV+ PVAGILDVL+NYAFVRTSGYL GP+DVYVS+++VRK+G+RRGDA+ GAV Sbjct 324 DTEVRDDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSLVRKHGLRRGDAIIGAV 383 Query 274 RVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLT 333 R P++GEQ QRQKFNPLVR+D ING E+++ RP+F KLTPLYPN+RLRLET LT Sbjct 384 RQPRDGEQ--QRQKFNPLVRVDKINGLDPEESRNRPDFTKLTPLYPNERLRLETEPHILT 441 Query 334 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 393 TRVIDL+MPIGKGQRAL+VSPPKAGKT++LQ IANAIT NNPECHLMVVLVDERPEEVTD Sbjct 442 TRVIDLVMPIGKGQRALVVSPPKAGKTSVLQSIANAITTNNPECHLMVVLVDERPEEVTD 501 Query 394 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 453 MQRSVKGEVIASTFDRPPSDHT+++ELAIERAKRLVE G DVVVLLDSITRLGRAYN A+ Sbjct 502 MQRSVKGEVIASTFDRPPSDHTTISELAIERAKRLVEMGHDVVVLLDSITRLGRAYNLAA 561 Query 454 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 513 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLT+IATA+VETGS GD+VIFEEFKGT Sbjct 562 PASGRILSGGVDSTALYPPKRFLGAARNIEGGGSLTVIATALVETGSAGDSVIFEEFKGT 621 Query 514 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 573 GNAELKLDRKIA++R FPAVDV+ SGTRK++LLLSPDE A++HKLRRVL LD QAIDL Sbjct 622 GNAELKLDRKIADKRTFPAVDVDSSGTRKEDLLLSPDELAVMHKLRRVLHALDGQQAIDL 681 Query 574 LMSQLRKTKNNYEFLVQVSKTTPGS 598 L+ +LRKT+ N EFL+QV+KTTPG+ Sbjct 682 LLDRLRKTRTNIEFLMQVAKTTPGA 706 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/35 (55%), Positives = 26/35 (75%), Gaps = 0/35 (0%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEE 71 L+ MVL ELR LA + G+ T+ +RK +LIAAI+E Sbjct 43 LSGMVLAELRELAGQLGIDSTAKLRKGDLIAAIKE 77 >gi|336179681|ref|YP_004585056.1| transcription termination factor Rho [Frankia symbiont of Datisca glomerata] gi|334860661|gb|AEH11135.1| transcription termination factor Rho [Frankia symbiont of Datisca glomerata] Length=788 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/385 (80%), Positives = 349/385 (91%), Gaps = 2/385 (0%) Query 213 AEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGA 272 +E +REDDV+ PVAGILDVLDNYAFVRTSGYL GP DVYVS+ VR++G+RRGDA+TG Sbjct 404 SEPVVREDDVLVPVAGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVRRHGLRRGDAITGV 463 Query 273 VRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERL 332 VR P+EGEQ +R K+N LVRLD++NG E+A+ RPEF KLTPLYP +RLRLET + L Sbjct 464 VRAPQEGEQ--RRDKYNALVRLDTVNGLEPEEARSRPEFTKLTPLYPQERLRLETEPQLL 521 Query 333 TTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVT 392 TTRVIDL+MP+GKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVLVDERPEEVT Sbjct 522 TTRVIDLVMPLGKGQRALIVSPPKAGKTMVLQAIANAITTNNPECHLMVVLVDERPEEVT 581 Query 393 DMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 452 DMQRSVKGEVIASTFDRPPSDHTSVAEL+IERAKRLVE G+DVVVLLDSITRLGRAYN A Sbjct 582 DMQRSVKGEVIASTFDRPPSDHTSVAELSIERAKRLVELGEDVVVLLDSITRLGRAYNLA 641 Query 453 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG 512 +PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATA+VETGST DTVIFEEFKG Sbjct 642 APASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKG 701 Query 513 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAID 572 TGNAELKLDRKIA++RVFPA+DVNPSGTR++E+LL+PDE I+HKLRRVL L+S QA+D Sbjct 702 TGNAELKLDRKIADKRVFPAIDVNPSGTRREEILLAPDELVIMHKLRRVLHTLESQQALD 761 Query 573 LLMSQLRKTKNNYEFLVQVSKTTPG 597 LL+ +L++T+ NYEFL+Q++KTTPG Sbjct 762 LLLDRLKQTRTNYEFLMQIAKTTPG 786 Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust. Identities = 17/37 (46%), Positives = 28/37 (76%), Gaps = 0/37 (0%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIR 73 L+ M+LPEL+A+A G++G +RK +LIAAI+ ++ Sbjct 65 LSAMLLPELQAMAASLGIQGVGRLRKGQLIAAIQNVQ 101 >gi|213964453|ref|ZP_03392653.1| transcription termination factor Rho [Corynebacterium amycolatum SK46] gi|213952646|gb|EEB64028.1| transcription termination factor Rho [Corynebacterium amycolatum SK46] Length=644 Score = 631 bits (1628), Expect = 9e-179, Method: Compositional matrix adjust. Identities = 313/399 (79%), Positives = 353/399 (89%), Gaps = 8/399 (2%) Query 212 GAEAELREDDVVQPVAGILDVLDN-YAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVT 270 G + E+REDDV+QPVAGI+DVLDN AFVRTSGYLPG +DV VS MVRK G+R+GDAVT Sbjct 241 GGQDEIREDDVLQPVAGIVDVLDNKTAFVRTSGYLPGSNDVLVSAQMVRKYGLRKGDAVT 300 Query 271 GAVRVPKE---GEQPN----QRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRL 323 G VR+P+E G+ + R+K+NPLV+++++NG E AK+RP F KLTPLYPN+RL Sbjct 301 GQVRMPRENGSGQVTHGNGRNRRKYNPLVKVETVNGLDPEQAKQRPNFAKLTPLYPNRRL 360 Query 324 RLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVL 383 RLET + LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI NNPEC++MVVL Sbjct 361 RLETEQKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYMMVVL 420 Query 384 VDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSIT 443 VDERPEEVTDMQRSV+GEVIASTFDRPPSDHT+VAELAIERAKRLVEQG+DVVVLLDSIT Sbjct 421 VDERPEEVTDMQRSVRGEVIASTFDRPPSDHTAVAELAIERAKRLVEQGQDVVVLLDSIT 480 Query 444 RLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGD 503 RLGRAYNN+SPASGRILSGGVDS ALYPPKRFLGAARNIEEGGSLTIIATAMVETGS GD Sbjct 481 RLGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIEEGGSLTIIATAMVETGSAGD 540 Query 504 TVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLS 563 TVIFEEFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLLS +E I+HKLRR+LS Sbjct 541 TVIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLSTEEARIMHKLRRILS 600 Query 564 GLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 L+S AIDLL+ QL+KT+NN EFL+QV+ + P + D D Sbjct 601 ALESQAAIDLLIKQLKKTRNNKEFLMQVASSAPMAADVD 639 >gi|237785869|ref|YP_002906574.1| transcription termination factor Rho [Corynebacterium kroppenstedtii DSM 44385] gi|237758781|gb|ACR18031.1| Transcription termination factor [Corynebacterium kroppenstedtii DSM 44385] Length=673 Score = 631 bits (1627), Expect = 1e-178, Method: Compositional matrix adjust. Identities = 312/394 (80%), Positives = 346/394 (88%), Gaps = 7/394 (1%) Query 216 ELREDDVVQPVAGILDVLDN-YAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVR 274 +LRE + QP+AGILDV+DN AF+RTSGY GP+DVYVSMNMVR GMRRGDAVTG ++ Sbjct 277 QLREGETFQPIAGILDVVDNNTAFIRTSGYQSGPNDVYVSMNMVRSQGMRRGDAVTGQIK 336 Query 275 VPKEGEQPNQ------RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETS 328 V ++G Q RQKF PL R+D++NG + E+AK RPEF KLTPLYPNQRLRLET Sbjct 337 VREDGSSRPQHGRGRNRQKFAPLARVDTVNGMTPEEAKARPEFAKLTPLYPNQRLRLETD 396 Query 329 TERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERP 388 ++LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQD+ANAIT NN EC+LMVVLVDERP Sbjct 397 QKKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDVANAITTNNQECYLMVVLVDERP 456 Query 389 EEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRA 448 EEVTDMQRSV GEVIASTFDRPPS+HT+VAELAIERAKRLVE G+DVVVLLDSITRLGRA Sbjct 457 EEVTDMQRSVNGEVIASTFDRPPSEHTTVAELAIERAKRLVEAGQDVVVLLDSITRLGRA 516 Query 449 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFE 508 YNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GDTVIFE Sbjct 517 YNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFE 576 Query 509 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSH 568 EFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE ++HKLRR+LS LD Sbjct 577 EFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLAPDEARVMHKLRRILSALDPQ 636 Query 569 QAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 QAIDLL+ QLRKTKNN EFL+Q++ + P S+ D Sbjct 637 QAIDLLIKQLRKTKNNGEFLMQIASSAPMSVPDD 670 >gi|258652309|ref|YP_003201465.1| transcription termination factor Rho [Nakamurella multipartita DSM 44233] gi|258555534|gb|ACV78476.1| transcription termination factor Rho [Nakamurella multipartita DSM 44233] Length=717 Score = 630 bits (1626), Expect = 1e-178, Method: Compositional matrix adjust. Identities = 305/395 (78%), Positives = 354/395 (90%), Gaps = 3/395 (0%) Query 207 ERSGDG-AEAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRR 265 ER +G +E ELR+DDV+ PVAGILDVLD+YAF+RTSGYL GP+DVYVS++ VRKNG+RR Sbjct 325 ERYAEGPSEPELRDDDVLVPVAGILDVLDSYAFIRTSGYLTGPNDVYVSLSQVRKNGLRR 384 Query 266 GDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRL 325 GDAVTGAVR +EGEQ QRQKFN LVRLDS+NG E A+ RPEF KLTPLYPN+RLRL Sbjct 385 GDAVTGAVRAQREGEQ--QRQKFNALVRLDSVNGLDPEQARNRPEFTKLTPLYPNERLRL 442 Query 326 ETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVD 385 ET + LTTRVIDL+MP+GKGQRALIVSPPKAGKT ++Q IANAI +NNPECHLMVVLVD Sbjct 443 ETESHLLTTRVIDLVMPVGKGQRALIVSPPKAGKTMVMQAIANAIAKNNPECHLMVVLVD 502 Query 386 ERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRL 445 ERPEEVTDMQRSVKGEVIASTFDRPP+DHT VAEL+IERAKRLVE G+DVVVLLDSITRL Sbjct 503 ERPEEVTDMQRSVKGEVIASTFDRPPADHTMVAELSIERAKRLVEMGRDVVVLLDSITRL 562 Query 446 GRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTV 505 GRAYN A+PASGRILSGGVDSTAL+PPKRFLGAARNIE GGSLTI A+A+VETGS GDTV Sbjct 563 GRAYNLAAPASGRILSGGVDSTALFPPKRFLGAARNIENGGSLTIFASALVETGSAGDTV 622 Query 506 IFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGL 565 IFEEFKGTGNAELKLDR++A++R+FPA+DV+ S TRK++LL+SPDE A+V KLRRVL+ L Sbjct 623 IFEEFKGTGNAELKLDRRLADKRIFPAIDVDQSSTRKEDLLMSPDELAVVVKLRRVLAAL 682 Query 566 DSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 D+ Q+I+L++ +LRKT++N EFL+QV+K TPG D Sbjct 683 DTQQSIELVLDRLRKTRSNIEFLMQVAKNTPGGSD 717 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/158 (35%), Positives = 81/158 (52%), Gaps = 22/158 (13%) Query 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQAN-GAPAVDRSAQEHDKGDRP 95 L+ MVL +L+A+A++ G++GTSGMRK +L+AAI + + GAPA A P Sbjct 33 LSGMVLTDLKAMASQLGIRGTSGMRKGDLVAAITAKQSGGHAGAPAAHEPAG-------P 85 Query 96 PSSEAPATQGE----QTPTEQIDSQSQQVRPERRSATREAGPSGSGERAGTAADDTDNRQ 151 + APAT G + P +I + Q PER + T++ P+ G AD + Sbjct 86 TNGSAPATNGHAREPELPLGEI-APPAQAAPERSAPTQDRSPAEP--EGGRTADHGADTA 142 Query 152 GGQQDAKTEERGTDAGGDQGGDQQASGGQQARGDEDGE 189 G + ++ +RGTD G +G D A G EDG+ Sbjct 143 GPGEPDRSADRGTDNGPAEGAD-------GADGGEDGQ 173 >gi|172040384|ref|YP_001800098.1| transcription termination factor Rho [Corynebacterium urealyticum DSM 7109] gi|171851688|emb|CAQ04664.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length=573 Score = 625 bits (1612), Expect = 7e-177, Method: Compositional matrix adjust. Identities = 349/577 (61%), Positives = 402/577 (70%), Gaps = 36/577 (6%) Query 34 AGSLATMVLPELRALANRAGVKGTSGMRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGD 93 A LA++ L ELR +A G+KGTS +RK +L+AAIE + GA A DR Q+ +K Sbjct 12 ANGLASLKLAELRQVAAAQGLKGTSKLRKGDLVAAIENAGK-GGGAVASDRPEQKAEKKA 70 Query 94 RPPSSEAPATQGEQTP--TEQIDSQSQQVRPERRSATREAGPSGSGERAGTAADDTDNRQ 151 S +G+Q EQ D + PE S +E SG+ ER D +NR Sbjct 71 EQRSERNERGEGKQADRRDEQQDGHASSKEPENNSGQQEEQNSGNNERE----DRRNNRH 126 Query 152 GGQQDAKTEERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSG- 210 + GGD ++ R + R R R G G Sbjct 127 -----------------NDGGDNHQGRRRRNRRNRRNRRGGDRGHDRNNGHRHNGHGDGG 169 Query 211 ---DGAEAELREDDVV-----QPVAGILDVLD-NYAFVRTSGYLPGPHDVYVSMNMVRKN 261 DG E + D PVAGILD D N AF+RT+GY GP DVYV +N VRK Sbjct 170 NHEDGGENRKEQQDHKPEPQEAPVAGILDFADANTAFIRTTGYHAGPTDVYVPINTVRKY 229 Query 262 GMRRGDAVTGAVR--VPKEGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYP 319 GMR GDA+ G +R + G + RQKF PL ++++NG S E A +RP+F KLTPLYP Sbjct 230 GMRHGDAIVGTIRPNAKQGGGRGRNRQKFTPLHSVETVNGLSPEQAAQRPDFSKLTPLYP 289 Query 320 NQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHL 379 NQRLRLET+ + LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAI+ NNPEC+L Sbjct 290 NQRLRLETTPKVLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAISTNNPECYL 349 Query 380 MVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLL 439 MVVLVDERPEEVTDMQRSV GEVIASTFDRPP +HT+VAELA+ERAKRLVEQGKDVV+LL Sbjct 350 MVVLVDERPEEVTDMQRSVNGEVIASTFDRPPKEHTAVAELAVERAKRLVEQGKDVVLLL 409 Query 440 DSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETG 499 DSITRLGRAYNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETG Sbjct 410 DSITRLGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIEHGGSLTIIATAMVETG 469 Query 500 STGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLR 559 S GDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDE ++HKLR Sbjct 470 SAGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEARVMHKLR 529 Query 560 RVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTP 596 R+LS LD AIDLL+ QLRK K N +F++Q++ + P Sbjct 530 RILSALDPQAAIDLLIKQLRKNKTNRDFMIQIASSAP 566 Lambda K H 0.311 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1366335125760 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40