BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1303 Length=161 Score E Sequences producing significant alignments: (Bits) Value gi|15608443|ref|NP_215819.1| hypothetical protein Rv1303 [Mycoba... 311 1e-83 gi|340626319|ref|YP_004744771.1| hypothetical protein MCAN_13201... 307 3e-82 gi|297730842|ref|ZP_06959960.1| hypothetical protein MtubKR_0710... 293 7e-78 gi|41408556|ref|NP_961392.1| hypothetical protein MAP2458c [Myco... 214 4e-54 gi|118619165|ref|YP_907497.1| hypothetical protein MUL_3961 [Myc... 205 2e-51 gi|118463390|ref|YP_880759.1| hypothetical protein MAV_1520 [Myc... 205 2e-51 gi|183984065|ref|YP_001852356.1| hypothetical protein MMAR_4094 ... 205 2e-51 gi|254774342|ref|ZP_05215858.1| hypothetical protein MaviaA2_066... 196 1e-48 gi|336460906|gb|EGO39789.1| ATP synthase I chain [Mycobacterium ... 193 7e-48 gi|254821302|ref|ZP_05226303.1| hypothetical protein MintA_15292... 191 2e-47 gi|240169511|ref|ZP_04748170.1| hypothetical protein MkanA1_0937... 189 1e-46 gi|333989942|ref|YP_004522556.1| hypothetical protein JDM601_130... 172 1e-41 gi|296170244|ref|ZP_06851837.1| conserved hypothetical protein [... 170 7e-41 gi|145222899|ref|YP_001133577.1| hypothetical protein Mflv_2311 ... 169 1e-40 gi|15827569|ref|NP_301832.1| integral membrane protein [Mycobact... 167 4e-40 gi|108800847|ref|YP_641044.1| hypothetical protein Mmcs_3883 [My... 164 4e-39 gi|118471766|ref|YP_889195.1| hypothetical protein MSMEG_4943 [M... 157 3e-37 gi|342858036|ref|ZP_08714692.1| hypothetical protein MCOL_04140 ... 140 5e-32 gi|120405289|ref|YP_955118.1| hypothetical protein Mvan_4335 [My... 137 4e-31 gi|169628537|ref|YP_001702186.1| hypothetical protein MAB_1446 [... 135 1e-30 gi|296138975|ref|YP_003646218.1| ATP synthase I [Tsukamurella pa... 94.7 4e-18 gi|317506171|ref|ZP_07963992.1| ATP synthase I [Segniliparus rug... 92.0 3e-17 gi|343928064|ref|ZP_08767529.1| putative ATP synthase I [Gordoni... 89.7 1e-16 gi|296393121|ref|YP_003658005.1| ATP synthase I [Segniliparus ro... 88.6 3e-16 gi|262201853|ref|YP_003273061.1| ATP synthase I [Gordonia bronch... 75.5 2e-12 gi|117927854|ref|YP_872405.1| putative integral membrane protein... 63.2 1e-08 gi|331695526|ref|YP_004331765.1| ATP synthase I [Pseudonocardia ... 47.4 8e-04 gi|333928768|ref|YP_004502347.1| EmrB/QacA subfamily drug resist... 37.0 0.92 gi|270265371|ref|ZP_06193632.1| hypothetical protein SOD_m01030 ... 37.0 1.0 gi|238759743|ref|ZP_04620902.1| Multidrug resistance protein B [... 37.0 1.1 gi|345045534|gb|EGW49457.1| hypothetical protein HMPREF0666_0272... 36.2 1.8 gi|123443444|ref|YP_001007417.1| multidrug resistance protein B ... 36.2 1.8 gi|303235832|ref|ZP_07322436.1| hypothetical protein HMPREF9296_... 35.8 2.0 gi|332160632|ref|YP_004297209.1| multidrug resistance protein B ... 35.8 2.1 gi|293394751|ref|ZP_06639042.1| EmrB/QacA family drug resistance... 35.8 2.1 gi|238765058|ref|ZP_04625994.1| Multidrug resistance protein B [... 35.0 4.2 gi|78189963|ref|YP_380301.1| transporter [Chlorobium chlorochrom... 34.7 4.5 gi|238787893|ref|ZP_04631689.1| Multidrug resistance protein B [... 34.7 5.3 gi|238793927|ref|ZP_04637546.1| Multidrug resistance protein B [... 34.7 5.4 gi|238784485|ref|ZP_04628494.1| Multidrug resistance protein B [... 34.7 5.5 gi|322821653|gb|EFZ27917.1| DNA repair protein, putative [Trypan... 34.3 5.7 gi|238795638|ref|ZP_04639153.1| Multidrug resistance protein B [... 34.3 5.8 gi|290985463|ref|XP_002675445.1| abc transporter [Naegleria grub... 34.3 7.0 gi|317490896|ref|ZP_07949332.1| H+ antiporter-1 family protein [... 33.9 7.5 gi|238752955|ref|ZP_04614416.1| Multidrug resistance protein B [... 33.9 7.8 gi|194335236|ref|YP_002017030.1| major facilitator superfamily p... 33.9 8.1 >gi|15608443|ref|NP_215819.1| hypothetical protein Rv1303 [Mycobacterium tuberculosis H37Rv] gi|15840754|ref|NP_335791.1| hypothetical protein MT1343 [Mycobacterium tuberculosis CDC1551] gi|31792496|ref|NP_854989.1| hypothetical protein Mb1335 [Mycobacterium bovis AF2122/97] 79 more sequence titles Length=161 Score = 311 bits (798), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 160/161 (99%), Positives = 161/161 (100%), Gaps = 0/161 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL Sbjct 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 Query 121 LVATTALPVLKKLRTATEEPVATYSSNGQTGGSEGRSASDD 161 LVATTALPVLKKLRTATEEPVATYSSNGQTGGSEGRSASDD Sbjct 121 LVATTALPVLKKLRTATEEPVATYSSNGQTGGSEGRSASDD 161 >gi|340626319|ref|YP_004744771.1| hypothetical protein MCAN_13201 [Mycobacterium canettii CIPT 140010059] gi|340004509|emb|CCC43652.1| conserved hypothetical transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=161 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 158/161 (99%), Positives = 160/161 (99%), Gaps = 0/161 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL Sbjct 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 Query 121 LVATTALPVLKKLRTATEEPVATYSSNGQTGGSEGRSASDD 161 LVATTALPVLKKLRTATEEPVATYSSNGQ+ GSEGRSASDD Sbjct 121 LVATTALPVLKKLRTATEEPVATYSSNGQSRGSEGRSASDD 161 >gi|297730842|ref|ZP_06959960.1| hypothetical protein MtubKR_07109 [Mycobacterium tuberculosis KZN R506] Length=152 Score = 293 bits (750), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 151/152 (99%), Positives = 152/152 (100%), Gaps = 0/152 (0%) Query 10 LVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAES 69 +VFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAES Sbjct 1 MVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAES 60 Query 70 ITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLLVATTALPV 129 ITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLLVATTALPV Sbjct 61 ITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLLVATTALPV 120 Query 130 LKKLRTATEEPVATYSSNGQTGGSEGRSASDD 161 LKKLRTATEEPVATYSSNGQTGGSEGRSASDD Sbjct 121 LKKLRTATEEPVATYSSNGQTGGSEGRSASDD 152 >gi|41408556|ref|NP_961392.1| hypothetical protein MAP2458c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396914|gb|AAS04775.1| hypothetical protein MAP_2458c [Mycobacterium avium subsp. paratuberculosis K-10] Length=160 Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 117/160 (74%), Positives = 139/160 (87%), Gaps = 1/160 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRLF I+V + AVA+L AG+ GHL VG+F G+GLLLGLLNA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLFAISVAITAVAVLAAGLSGHLMVGVFFGIGLLLGLLNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 +LVRRS +SITAKEHPLKRSMA+NSASRLAIIT++GLIIAY+FRPAGLGV+FGLA FQVL Sbjct 61 VLVRRSVDSITAKEHPLKRSMAVNSASRLAIITVVGLIIAYLFRPAGLGVLFGLALFQVL 120 Query 121 LVATTALPVLKKLRTATEEPVATYSSNGQTGGSEGRSASD 160 LVA+TALPV KKLR P A ++ G + G+EGR+++D Sbjct 121 LVASTALPVWKKLRAGDWAPSADGAAAG-SDGTEGRNSTD 159 >gi|118619165|ref|YP_907497.1| hypothetical protein MUL_3961 [Mycobacterium ulcerans Agy99] gi|118571275|gb|ABL06026.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=174 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/168 (74%), Positives = 141/168 (84%), Gaps = 9/168 (5%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRL I++GL AVA +VAG+FGHL VG+FLG+GLLLGLLNA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLLVISLGLTAVATVVAGLFGHLMVGVFLGIGLLLGLLNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 LLVRRS ESIT ++HPLKRSMALNSASR+A+ITI+ LIIAYIFRPAGLGVVFGLA FQ+L Sbjct 61 LLVRRSVESITGRDHPLKRSMALNSASRVAVITIMALIIAYIFRPAGLGVVFGLALFQLL 120 Query 121 LVATTALPVLKKLRT-------ATEEPVATYSSNGQTGGSEGRSASDD 161 LVA+TALPV KKLRT A +PV S +G GSEG +ASDD Sbjct 121 LVASTALPVWKKLRTGDFAADDAQNQPVG--SDSGVFKGSEGSTASDD 166 >gi|118463390|ref|YP_880759.1| hypothetical protein MAV_1520 [Mycobacterium avium 104] gi|118164677|gb|ABK65574.1| conserved hypothetical protein [Mycobacterium avium 104] Length=160 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 114/160 (72%), Positives = 136/160 (85%), Gaps = 1/160 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRLF I+V + AVA+L AG+ GHL VG+F G+GLLLGLLNA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLFAISVAITAVAVLAAGLSGHLMVGVFFGIGLLLGLLNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 +LVRRS +SITA+EHPLKRSMA+NSASRLAIIT++GLIIAY+FRPAGLGV+FGLA FQVL Sbjct 61 VLVRRSVDSITAREHPLKRSMAVNSASRLAIITVVGLIIAYLFRPAGLGVLFGLALFQVL 120 Query 121 LVATTALPVLKKLRTATEEPVATYSSNGQTGGSEGRSASD 160 LVA+TALPV KKLR P + + G+EGR+++D Sbjct 121 LVASTALPVWKKLRAGDWAP-SADGAAAGADGTEGRNSTD 159 >gi|183984065|ref|YP_001852356.1| hypothetical protein MMAR_4094 [Mycobacterium marinum M] gi|183177391|gb|ACC42501.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=166 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/168 (74%), Positives = 141/168 (84%), Gaps = 9/168 (5%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRL I++GL AVA +VAG+FGHL VG+FLG+GLLLGLLNA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLLVISLGLTAVATVVAGLFGHLMVGVFLGIGLLLGLLNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 LLVRRS ESIT ++HPLKRSMALNSASR+A+ITI+ LIIAYIFRPAGLGVVFGLA FQ+L Sbjct 61 LLVRRSVESITGRDHPLKRSMALNSASRVAVITIMALIIAYIFRPAGLGVVFGLALFQLL 120 Query 121 LVATTALPVLKKLRT-------ATEEPVATYSSNGQTGGSEGRSASDD 161 LVA+TALPV KKLRT A +PV S +G GSEG +ASDD Sbjct 121 LVASTALPVWKKLRTGDFAADDAENQPVG--SDSGVFKGSEGSTASDD 166 >gi|254774342|ref|ZP_05215858.1| hypothetical protein MaviaA2_06695 [Mycobacterium avium subsp. avium ATCC 25291] Length=151 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 108/151 (72%), Positives = 130/151 (87%), Gaps = 1/151 (0%) Query 10 LVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAES 69 +VFPSVAFRPVRLF I+V + AVA+L AG+ GHL VG+F G+GLLLGLLNA+LVRRS +S Sbjct 1 MVFPSVAFRPVRLFAISVAITAVAVLAAGLSGHLMVGVFFGIGLLLGLLNAVLVRRSVDS 60 Query 70 ITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLLVATTALPV 129 ITAKEHPLKRSMA+NSASRLAIIT++GLIIAY+FRPAGLGV+FGLA FQVLLVA+TALPV Sbjct 61 ITAKEHPLKRSMAVNSASRLAIITVVGLIIAYLFRPAGLGVLFGLALFQVLLVASTALPV 120 Query 130 LKKLRTATEEPVATYSSNGQTGGSEGRSASD 160 KKLR P A ++ G + G+EGR+++D Sbjct 121 WKKLRAGDWAPSADGAAAG-SDGTEGRNSTD 150 >gi|336460906|gb|EGO39789.1| ATP synthase I chain [Mycobacterium avium subsp. paratuberculosis S397] Length=150 Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 107/150 (72%), Positives = 129/150 (86%), Gaps = 1/150 (0%) Query 11 VFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESI 70 +FPSVAFRPVRLF I+V + AVA+L AG+ GHL VG+F G+GLLLGLLNA+LVRRS +SI Sbjct 1 MFPSVAFRPVRLFAISVAITAVAVLAAGLSGHLMVGVFFGIGLLLGLLNAVLVRRSVDSI 60 Query 71 TAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLLVATTALPVL 130 TAKEHPLKRSMA+NSASRLAIIT++GLIIAY+FRPAGLGV+FGLA FQVLLVA+TALPV Sbjct 61 TAKEHPLKRSMAVNSASRLAIITVVGLIIAYLFRPAGLGVLFGLALFQVLLVASTALPVW 120 Query 131 KKLRTATEEPVATYSSNGQTGGSEGRSASD 160 KKLR P A ++ G + G+EGR+++D Sbjct 121 KKLRAGDWAPSADGAAAG-SDGTEGRNSTD 149 >gi|254821302|ref|ZP_05226303.1| hypothetical protein MintA_15292 [Mycobacterium intracellulare ATCC 13950] Length=155 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 107/154 (70%), Positives = 126/154 (82%), Gaps = 3/154 (1%) Query 10 LVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAES 69 +VFPSVAFRPVRLF I++ + AVA+L AG+ GHL VG+F G+GLLLGLLNA+LVRRS ES Sbjct 1 MVFPSVAFRPVRLFAISIAITAVAVLAAGLSGHLMVGVFFGIGLLLGLLNAVLVRRSVES 60 Query 70 ITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLLVATTALPV 129 ITAK+HPLKRSMA+NSASRLAIIT++GLIIAY+FRPAGLGVVFGLA FQ+LLVA+TALPV Sbjct 61 ITAKDHPLKRSMAVNSASRLAIITVIGLIIAYVFRPAGLGVVFGLALFQILLVASTALPV 120 Query 130 LKKLRTATEEPVATYSSNGQTGGS---EGRSASD 160 KKLR A + G GS EGR+ +D Sbjct 121 WKKLRAGDWVESADGAGGGVNAGSEGTEGRNTTD 154 >gi|240169511|ref|ZP_04748170.1| hypothetical protein MkanA1_09371 [Mycobacterium kansasii ATCC 12478] Length=161 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/161 (76%), Positives = 131/161 (82%), Gaps = 0/161 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRL I+V L A AMLVAG+ GHL VG+FLG+GLLLGLLNA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLLVISVVLTAAAMLVAGLGGHLMVGVFLGVGLLLGLLNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 LLVRRS ESITA+EHPLK SMALNSASRLAIIT+LGLI+AYIFRPAGLGVVFGLA FQVL Sbjct 61 LLVRRSVESITAREHPLKSSMALNSASRLAIITVLGLIVAYIFRPAGLGVVFGLALFQVL 120 Query 121 LVATTALPVLKKLRTATEEPVATYSSNGQTGGSEGRSASDD 161 LVA TALPV KKLR + G+E RS SDD Sbjct 121 LVAATALPVWKKLRAGGGSSSDDGGVLTASEGTEVRSPSDD 161 >gi|333989942|ref|YP_004522556.1| hypothetical protein JDM601_1302 [Mycobacterium sp. JDM601] gi|333485910|gb|AEF35302.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=151 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 89/135 (66%), Positives = 111/135 (83%), Gaps = 0/135 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLV PSV F+P+RL I + L AVA L A GH+ G F G GL LGL+NA Sbjct 1 MTTPAQDAPLVLPSVVFQPIRLLLICIALTAVATLAAAGLGHVMFGAFFGFGLALGLVNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 LL+RRS +SITA++HPLK MA+NSA+RL +IT++GL++AY+FRP GLGV+FGLA F+VL Sbjct 61 LLIRRSVQSITAQDHPLKSKMAMNSATRLLVITVVGLVVAYLFRPQGLGVLFGLALFEVL 120 Query 121 LVATTALPVLKKLRT 135 LVATTALPV+KKLR+ Sbjct 121 LVATTALPVMKKLRS 135 >gi|296170244|ref|ZP_06851837.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895120|gb|EFG74838.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=166 Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 116/168 (70%), Positives = 136/168 (81%), Gaps = 9/168 (5%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRLF +++ + AVA+ VAG GHL VG+F G+GLLLGLLNA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLFVVSIAVTAVAVAVAGWAGHLMVGVFFGVGLLLGLLNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 LLVRRS SITAKEHP+K SMALNSA+RLAIIT++GLIIAYIFRP+GLGVVFGLA FQ+L Sbjct 61 LLVRRSVASITAKEHPMKSSMALNSATRLAIITVVGLIIAYIFRPSGLGVVFGLALFQIL 120 Query 121 LVATTALPVLKKLRTATEEPVATYSSNGQTG-------GSEGRSASDD 161 LVA+TALPV KKLR + + S+G G G+EGR+ SDD Sbjct 121 LVASTALPVWKKLRAG--DWAEAHPSDGSAGGVIAGSEGTEGRNGSDD 166 >gi|145222899|ref|YP_001133577.1| hypothetical protein Mflv_2311 [Mycobacterium gilvum PYR-GCK] gi|315443364|ref|YP_004076243.1| Bacterial ATP synthase I [Mycobacterium sp. Spyr1] gi|145215385|gb|ABP44789.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315261667|gb|ADT98408.1| Bacterial ATP synthase I [Mycobacterium sp. Spyr1] Length=148 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 87/136 (64%), Positives = 111/136 (82%), Gaps = 1/136 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRL I V L A+AM+ AG G++ G+F G+GL LGL NA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLLVICVALTALAMVAAGFGGNILYGVFFGVGLGLGLTNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRP-AGLGVVFGLAFFQV 119 LLVRR+ ESITA++HPLK+ MALNSA+RL +IT +GL +A++F+ GL V+FGLA FQ Sbjct 61 LLVRRAVESITAEDHPLKKKMALNSATRLLVITAIGLTVAFLFKDNGGLAVLFGLAIFQA 120 Query 120 LLVATTALPVLKKLRT 135 LLV +T+LPVL+K+R+ Sbjct 121 LLVMSTSLPVLRKIRS 136 >gi|15827569|ref|NP_301832.1| integral membrane protein [Mycobacterium leprae TN] gi|221230046|ref|YP_002503462.1| putative integral membrane protein [Mycobacterium leprae Br4923] gi|1722960|sp|P53431.1|Y1138_MYCLE RecName: Full=Uncharacterized protein ML1138 gi|699326|gb|AAA63087.1| u471d [Mycobacterium leprae] gi|13093119|emb|CAC31519.1| possible integral membrane protein [Mycobacterium leprae] gi|219933153|emb|CAR71233.1| possible integral membrane protein [Mycobacterium leprae Br4923] Length=153 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 107/157 (69%), Positives = 119/157 (76%), Gaps = 7/157 (4%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLV P+VAFRPVRLF IN+ L +AML AG+ GHL VG+F G+GLLLGLLNA Sbjct 1 MTTPAQDAPLVLPAVAFRPVRLFIINIVLTGLAMLAAGLSGHLMVGVFFGIGLLLGLLNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 LLVR S ESITA+ HPLKRSMALNSASRLAIIT+ GLIIAY F AGLGVVFGLA FQVL Sbjct 61 LLVRCSVESITAQGHPLKRSMALNSASRLAIITVFGLIIAYAFPLAGLGVVFGLALFQVL 120 Query 121 LVATTALPVLKKLRTATEEPVATYSSNGQTGGSEGRS 157 LV +T LPV +K R + G GSEG Sbjct 121 LVLSTMLPVWRKFRFGEAD-------GGVLKGSEGEE 150 >gi|108800847|ref|YP_641044.1| hypothetical protein Mmcs_3883 [Mycobacterium sp. MCS] gi|119869987|ref|YP_939939.1| hypothetical protein Mkms_3957 [Mycobacterium sp. KMS] gi|126436445|ref|YP_001072136.1| hypothetical protein Mjls_3869 [Mycobacterium sp. JLS] gi|108771266|gb|ABG09988.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696076|gb|ABL93149.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126236245|gb|ABN99645.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=148 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 88/139 (64%), Positives = 113/139 (82%), Gaps = 0/139 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLV P+VAFRPVRL I V LAAVA + A + G VG+F +GL LGL NA Sbjct 1 MTTPAQDAPLVLPAVAFRPVRLLVICVALAAVAAVAAALLGVPMVGLFFAIGLGLGLANA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 ++++RS ESIT+K+HPLKR+MALNSA+RL I+T++GL IAY+F+P GLGVVFG+A FQV+ Sbjct 61 VMIQRSVESITSKDHPLKRNMALNSATRLLIMTVIGLTIAYVFKPQGLGVVFGMALFQVI 120 Query 121 LVATTALPVLKKLRTATEE 139 LVA+T LPV+KKL+ + Sbjct 121 LVASTTLPVVKKLKAQAAD 139 >gi|118471766|ref|YP_889195.1| hypothetical protein MSMEG_4943 [Mycobacterium smegmatis str. MC2 155] gi|118173053|gb|ABK73949.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=148 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/147 (59%), Positives = 115/147 (79%), Gaps = 1/147 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPA DAPLVFPSVAFRP+RL + V L A+A+L AG GH+ GMF G+GL LGL+NA Sbjct 1 MTTPAHDAPLVFPSVAFRPLRLLVVCVALTAIALLAAGFTGHVLFGMFFGIGLGLGLINA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPA-GLGVVFGLAFFQV 119 LLVRR+ ESITA+EHPLK+ MA+NSA+RL +IT + L IA++F+ + G+ V+FGLA FQ Sbjct 61 LLVRRAVESITAEEHPLKKKMAVNSATRLLVITAIALAIAFVFKSSGGIAVLFGLAVFQA 120 Query 120 LLVATTALPVLKKLRTATEEPVATYSS 146 LLV +T++PVL+K+R+ + + T S Sbjct 121 LLVMSTSIPVLRKIRSTGLDVLDTESK 147 >gi|342858036|ref|ZP_08714692.1| hypothetical protein MCOL_04140 [Mycobacterium colombiense CECT 3035] gi|342135369|gb|EGT88535.1| hypothetical protein MCOL_04140 [Mycobacterium colombiense CECT 3035] Length=141 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 91/132 (69%), Positives = 107/132 (82%), Gaps = 0/132 (0%) Query 24 FINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKRSMAL 83 I+V + AVA+L AG+ GH VG+F G+GLLLGLLNA+LVRRS ESITAK+HPLKRSMA+ Sbjct 1 MISVAITAVAVLAAGLSGHPMVGVFFGVGLLLGLLNAVLVRRSVESITAKDHPLKRSMAV 60 Query 84 NSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTATEEPVAT 143 NSASRLA++TILGLIIAY+FRPAGLGV+FGLA FQVLLVA+TALPV KKLR + Sbjct 61 NSASRLALMTILGLIIAYVFRPAGLGVLFGLAIFQVLLVASTALPVWKKLRAGDWAESSD 120 Query 144 YSSNGQTGGSEG 155 + G GSEG Sbjct 121 AAEGGAVAGSEG 132 >gi|120405289|ref|YP_955118.1| hypothetical protein Mvan_4335 [Mycobacterium vanbaalenii PYR-1] gi|119958107|gb|ABM15112.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=148 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/136 (61%), Positives = 111/136 (82%), Gaps = 1/136 (0%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 +TTPAQDAPLVFPSVAFRPVRL + V L A+A+L +G+ G++ G F GLGL LGL+NA Sbjct 1 MTTPAQDAPLVFPSVAFRPVRLLIVCVALTALALLASGLTGNIFFGAFFGLGLGLGLVNA 60 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRP-AGLGVVFGLAFFQV 119 LLVRR+ E+ITA++HPLK+ MA+NSA+RL +IT + L +A++FR G+ V+FGLA FQ Sbjct 61 LLVRRAVEAITAEDHPLKKKMAVNSATRLLVITAVALTVAFVFREHGGIAVLFGLAIFQA 120 Query 120 LLVATTALPVLKKLRT 135 LLV +T++PVL+K+R+ Sbjct 121 LLVMSTSIPVLRKIRS 136 >gi|169628537|ref|YP_001702186.1| hypothetical protein MAB_1446 [Mycobacterium abscessus ATCC 19977] gi|169240504|emb|CAM61532.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=148 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/138 (58%), Positives = 106/138 (77%), Gaps = 2/138 (1%) Query 1 VTTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNA 60 VTTP DAPLV P++AFRP+RL + L A+A+L + + G G+F GL LGL+NA Sbjct 5 VTTP--DAPLVLPALAFRPLRLAALCGVLGALALLASALLGQWQFGVFFVTGLGLGLVNA 62 Query 61 LLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVL 120 LLVR+SAE ITA+++P K+ MA+NSA+RL IIT+L L++A++FRPAGLGV FG+A FQVL Sbjct 63 LLVRQSAEVITAQDNPSKQKMAINSAARLMIITVLALVLAFVFRPAGLGVFFGVALFQVL 122 Query 121 LVATTALPVLKKLRTATE 138 LV TTA+PV K +R+ + Sbjct 123 LVLTTAVPVWKGIRSVNQ 140 >gi|296138975|ref|YP_003646218.1| ATP synthase I [Tsukamurella paurometabola DSM 20162] gi|296027109|gb|ADG77879.1| ATP synthase I [Tsukamurella paurometabola DSM 20162] Length=137 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/143 (42%), Positives = 85/143 (60%), Gaps = 14/143 (9%) Query 2 TTPAQDAPLVFPSV--AFRPVRLFFIN-----VGLAAVAMLVAGVFGHLTVGMFLGLGLL 54 TTPA PSV A RPV + IN +GL+ +A + FGH + +G L Sbjct 2 TTPA-------PSVDEAQRPVGVSMINPIVIVIGLSVIAGGIGAAFGHPWFAAWFLVGGL 54 Query 55 LGLLNALLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGL 114 L +LNA L ++TA++ P K +A+NS RL +++++ ++IAY FRP GLGV+FGL Sbjct 55 LAVLNAKLAVLKVATVTAEDEPRKAPVAVNSMVRLGVVSVIAIVIAYFFRPDGLGVIFGL 114 Query 115 AFFQVLLVATTALPVLKKLRTAT 137 A Q++LV T +PVLK LR + Sbjct 115 AVGQIVLVLNTVIPVLKGLRQQS 137 >gi|317506171|ref|ZP_07963992.1| ATP synthase I [Segniliparus rugosus ATCC BAA-974] gi|316255516|gb|EFV14765.1| ATP synthase I [Segniliparus rugosus ATCC BAA-974] Length=153 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/136 (39%), Positives = 79/136 (59%), Gaps = 1/136 (0%) Query 2 TTPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNAL 61 T P D V P+ + ++V + + VA H +G F GL+LGL+N Sbjct 19 TAPDHDG-FVMPAASLSLQWPIIVSVVFGMIFVAVASALRHPYMGAFACFGLVLGLVNLW 77 Query 62 LVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLL 121 LV+R+ +TA+ +P K+ MAL+S RL +IT+ L++ ++ RP GLGV GLA FQV+ Sbjct 78 LVQRAVARVTAENNPSKQLMALSSFKRLGVITLFALVVGFLDRPDGLGVFLGLAVFQVVF 137 Query 122 VATTALPVLKKLRTAT 137 + T++PVLK LR + Sbjct 138 LVNTSVPVLKGLRQQS 153 >gi|343928064|ref|ZP_08767529.1| putative ATP synthase I [Gordonia alkanivorans NBRC 16433] gi|343762072|dbj|GAA14455.1| putative ATP synthase I [Gordonia alkanivorans NBRC 16433] Length=137 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/133 (43%), Positives = 84/133 (64%), Gaps = 0/133 (0%) Query 3 TPAQDAPLVFPSVAFRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALL 62 T A D+ V+P R I G+ V +V+ + GH +F LG+ L+NALL Sbjct 3 TSAPDSAPVYPQAPTGLRRPALIAGGVTLVVAVVSILVGHPLFAVFFLLGVAGILVNALL 62 Query 63 VRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLLV 122 V+R+ +++TA+ +P K ++ALNSA RL IT+L L+ A++ +P GLG +FGLA QV+LV Sbjct 63 VKRAVDTVTAELNPRKTALALNSAMRLGAITVLALLAAFLVQPDGLGAMFGLAIGQVVLV 122 Query 123 ATTALPVLKKLRT 135 T +PV+K LR+ Sbjct 123 LNTVIPVMKGLRS 135 >gi|296393121|ref|YP_003658005.1| ATP synthase I [Segniliparus rotundus DSM 44985] gi|296180268|gb|ADG97174.1| ATP synthase I [Segniliparus rotundus DSM 44985] Length=148 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/97 (47%), Positives = 64/97 (66%), Gaps = 0/97 (0%) Query 41 GHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIA 100 GH VG++ GL LGL+N LV+RS +TA+ +P K+ MAL+S RL II++ L++ Sbjct 52 GHPFVGLYACFGLFLGLVNLWLVQRSVAKVTAEANPSKQLMALSSFKRLGIISLFALVVG 111 Query 101 YIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 ++ RP GLGV GLA FQV+ + +PVLK LR + Sbjct 112 FLDRPDGLGVFLGLAVFQVVFLLNAIVPVLKGLRQHS 148 >gi|262201853|ref|YP_003273061.1| ATP synthase I [Gordonia bronchialis DSM 43247] gi|262085200|gb|ACY21168.1| ATP synthase I [Gordonia bronchialis DSM 43247] Length=137 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/77 (49%), Positives = 56/77 (73%), Gaps = 0/77 (0%) Query 58 LNALLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFF 117 +NA +VR+ +++ A +P K+S+ALNSA+RL IT++ L A++ +P GLGV+FGLA Sbjct 58 VNAAMVRQVVDTVAAAPNPHKKSLALNSAARLGAITLVALAAAFLVQPEGLGVMFGLAIG 117 Query 118 QVLLVATTALPVLKKLR 134 QV+LV +PV+K LR Sbjct 118 QVILVLNVVIPVMKGLR 134 >gi|117927854|ref|YP_872405.1| putative integral membrane protein [Acidothermus cellulolyticus 11B] gi|117648317|gb|ABK52419.1| putative integral membrane protein [Acidothermus cellulolyticus 11B] Length=131 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/116 (38%), Positives = 61/116 (53%), Gaps = 0/116 (0%) Query 19 PVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLK 78 P R+F I L V + A V GH +G+ +GL LG LN +L RS + P + Sbjct 14 PRRVFVIVAVLGGVVLAGASVLGHPLIGILFLVGLALGTLNNVLTVRSILKHISAGDPNR 73 Query 79 RSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLR 134 + A +S RL I++ L+ FR G+ V+ GLA F +L +ALPVLK+ R Sbjct 74 KQYAKSSLVRLGYISLFALVFVAAFRRDGIAVLAGLAIFHLLASVASALPVLKEFR 129 >gi|331695526|ref|YP_004331765.1| ATP synthase I [Pseudonocardia dioxanivorans CB1190] gi|326950215|gb|AEA23912.1| ATP synthase I [Pseudonocardia dioxanivorans CB1190] Length=134 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/95 (32%), Positives = 51/95 (54%), Gaps = 1/95 (1%) Query 41 GHLTVGMFLGLGLLLGLLNALLVRRSAESIT-AKEHPLKRSMALNSASRLAIITILGLII 99 G+ +F +G+ LG+LN+ S + P K + RLA+IT++ Sbjct 38 GYGLFALFGCVGIALGILNSAFAMGSVVRFSHGAAAPSKAKFSGGVLVRLAVITVVAFGC 97 Query 100 AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLR 134 A++ RP G+ V GLA FQ+L ++ LP++K++R Sbjct 98 AFLVRPQGVAVFVGLAVFQLLATVSSILPLIKEIR 132 >gi|333928768|ref|YP_004502347.1| EmrB/QacA subfamily drug resistance transporter [Serratia sp. AS12] gi|333933721|ref|YP_004507299.1| EmrB/QacA subfamily drug resistance transporter [Serratia sp. AS9] gi|333475328|gb|AEF47038.1| drug resistance transporter, EmrB/QacA subfamily [Serratia sp. AS9] gi|333492828|gb|AEF51990.1| drug resistance transporter, EmrB/QacA subfamily [Serratia sp. AS12] gi|333962924|gb|AEG29697.1| drug resistance transporter, EmrB/QacA subfamily [Serratia sp. AS13] Length=511 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 41/127 (33%), Positives = 58/127 (46%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF + L A+A + G+ L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWSTALFALASWLCGISNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S I+ I G I+ YI G +F + L V A+ LK T T Sbjct 136 SMALALWSMTVIVAPIFGPILGGYISDNYHWGWIFFINIPIGLFVILVAMATLKGRETKT 195 Query 138 E-EPVAT 143 E +P+ T Sbjct 196 EIKPIDT 202 >gi|270265371|ref|ZP_06193632.1| hypothetical protein SOD_m01030 [Serratia odorifera 4Rx13] gi|270040775|gb|EFA13878.1| hypothetical protein SOD_m01030 [Serratia odorifera 4Rx13] Length=511 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 41/127 (33%), Positives = 58/127 (46%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF + L A+A + G+ L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWSTALFALASWLCGISNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S I+ I G I+ YI G +F + L V A+ LK T T Sbjct 136 SMALALWSMTVIVAPIFGPILGGYISDNYHWGWIFFINIPIGLFVILVAMATLKGRETKT 195 Query 138 E-EPVAT 143 E +P+ T Sbjct 196 EIKPIDT 202 >gi|238759743|ref|ZP_04620902.1| Multidrug resistance protein B [Yersinia aldovae ATCC 35236] gi|238702069|gb|EEP94627.1| Multidrug resistance protein B [Yersinia aldovae ATCC 35236] Length=511 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 42/127 (34%), Positives = 59/127 (47%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF + GL A+A + G+ L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWSTGLFALASWLCGISNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S ++ I G I+ YI G +F + LLV A LK T T Sbjct 136 SMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLLVILVAGSTLKGRETKT 195 Query 138 E-EPVAT 143 E +P+ T Sbjct 196 EIKPIDT 202 >gi|345045534|gb|EGW49457.1| hypothetical protein HMPREF0666_02729 [Prevotella sp. C561] Length=990 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/83 (27%), Positives = 40/83 (49%), Gaps = 8/83 (9%) Query 46 GMFLGLGLLLGLLNALLVRRSAESITAKEHPLKRSMALNSASRLAII--------TILGL 97 G+ LGL +L+ V+ + + + P+ ++ LN L II T+ G+ Sbjct 762 GLCTTLGLGKNILHGFDVKNATAQVVVEGKPMGAAVTLNGGDALGIIFTPDTVSYTVNGI 821 Query 98 IIAYIFRPAGLGVVFGLAFFQVL 120 ++ + AGLG +FG+ F + L Sbjct 822 VVHRAAKKAGLGWLFGMGFNKGL 844 >gi|123443444|ref|YP_001007417.1| multidrug resistance protein B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090405|emb|CAL13273.1| multidrug resistance protein B [Yersinia enterocolitica subsp. enterocolitica 8081] Length=510 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 42/127 (34%), Positives = 59/127 (47%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF + GL A+A + GV L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWSTGLFALASWLCGVSNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S ++ I G I+ YI G +F + L+V A LK T T Sbjct 136 SMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLVVILMAGSTLKGRETKT 195 Query 138 E-EPVAT 143 E +P+ T Sbjct 196 EIKPIDT 202 >gi|303235832|ref|ZP_07322436.1| hypothetical protein HMPREF9296_1043 [Prevotella disiens FB035-09AN] gi|302483974|gb|EFL46965.1| hypothetical protein HMPREF9296_1043 [Prevotella disiens FB035-09AN] Length=454 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/83 (27%), Positives = 40/83 (49%), Gaps = 8/83 (9%) Query 46 GMFLGLGLLLGLLNALLVRRSAESITAKEHPLKRSMALNSASRLAII--------TILGL 97 G+ LGL +L+ V+ + + + P+ ++ LN L II T+ G+ Sbjct 226 GLCTTLGLGKNILHGFDVKNATAQVVVEGKPMGAAVTLNGGDALGIIFTPDTVSYTVNGI 285 Query 98 IIAYIFRPAGLGVVFGLAFFQVL 120 ++ + AGLG +FG+ F + L Sbjct 286 VVHRAAKKAGLGWLFGMGFNKGL 308 >gi|332160632|ref|YP_004297209.1| multidrug resistance protein B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604501|emb|CBY25999.1| inner membrane component of tripartite multidrug resistance system [Yersinia enterocolitica subsp. palearctica Y11] gi|325664862|gb|ADZ41506.1| multidrug resistance protein B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863867|emb|CBX73959.1| multidrug resistance protein B [Yersinia enterocolitica W22703] Length=511 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 42/127 (34%), Positives = 59/127 (47%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF + GL A+A + GV L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWSTGLFALASWLCGVSNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S ++ I G I+ YI G +F + L+V A LK T T Sbjct 136 SMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLVVILMAGSTLKGRETKT 195 Query 138 E-EPVAT 143 E +P+ T Sbjct 196 EIKPIDT 202 >gi|293394751|ref|ZP_06639042.1| EmrB/QacA family drug resistance transporter [Serratia odorifera DSM 4582] gi|291422702|gb|EFE95940.1| EmrB/QacA family drug resistance transporter [Serratia odorifera DSM 4582] Length=498 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 41/130 (32%), Positives = 59/130 (46%), Gaps = 5/130 (3%) Query 17 FRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHP 76 F VRLF + L A+A + G+ L GM + ++ GL+ L+ S + P Sbjct 62 FGEVRLFLWSTALFALASWLCGISNSL--GMLIFFRVVQGLVAGPLIPLSQSLLLNNYPP 119 Query 77 LKRSMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLR 134 KR+MAL S I+ I G I+ YI G +F + L V A+ LK Sbjct 120 AKRAMALALWSMTVIVAPIFGPILGGYISDNYHWGWIFFINIPIGLFVILAAMATLKGRE 179 Query 135 TATE-EPVAT 143 T TE +P+ T Sbjct 180 TKTEIKPIDT 189 >gi|238765058|ref|ZP_04625994.1| Multidrug resistance protein B [Yersinia kristensenii ATCC 33638] gi|238696744|gb|EEP89525.1| Multidrug resistance protein B [Yersinia kristensenii ATCC 33638] Length=511 Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust. Identities = 41/127 (33%), Positives = 59/127 (47%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF + GL A+A + GV L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWSTGLFALASWLCGVSNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S ++ I G I+ YI G +F + ++V A LK T T Sbjct 136 SMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGVVVILVAGSTLKGRETKT 195 Query 138 E-EPVAT 143 E +P+ T Sbjct 196 EIKPIDT 202 >gi|78189963|ref|YP_380301.1| transporter [Chlorobium chlorochromatii CaD3] gi|78172162|gb|ABB29258.1| transporter, putative [Chlorobium chlorochromatii CaD3] Length=429 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 33/91 (37%), Positives = 50/91 (55%), Gaps = 15/91 (16%) Query 41 GHLTVGMFLGLGLLLGLLNALLV---RRSAESITAKEHPLKRSMALNSA----SRLAIIT 93 G +T+G+ L L LLG +NA+ V + I ++H L ++A+NSA SR+ Sbjct 127 GTVTMGIILLLSFLLGCVNAINVPALQAFLSEIVRRDH-LPSAIAMNSAIYNSSRVIGPA 185 Query 94 ILGLIIAYIFRPAGLGVVF---GLAFFQVLL 121 + G +IAY +G G+ F G +FF VLL Sbjct 186 LAGWLIAY----SGAGIAFIVNGFSFFAVLL 212 >gi|238787893|ref|ZP_04631689.1| Multidrug resistance protein B [Yersinia frederiksenii ATCC 33641] gi|238723841|gb|EEQ15485.1| Multidrug resistance protein B [Yersinia frederiksenii ATCC 33641] Length=511 Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust. Identities = 40/127 (32%), Positives = 58/127 (46%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF +GL A+A + G+ L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWAIGLFALASWLCGISNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S ++ I G I+ YI G +F + ++V A LK T T Sbjct 136 SMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGIVVVLIAGSTLKGRETKT 195 Query 138 E-EPVAT 143 E P+ T Sbjct 196 EIRPIDT 202 >gi|238793927|ref|ZP_04637546.1| Multidrug resistance protein B [Yersinia intermedia ATCC 29909] gi|238726694|gb|EEQ18229.1| Multidrug resistance protein B [Yersinia intermedia ATCC 29909] Length=510 Score = 34.7 bits (78), Expect = 5.4, Method: Compositional matrix adjust. Identities = 41/127 (33%), Positives = 58/127 (46%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF GL A+A + G+ L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWATGLFALASWLCGISNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S ++ I G I+ YI G +F + L+V A LK T T Sbjct 136 SMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLVVILVAGSTLKGRETKT 195 Query 138 E-EPVAT 143 E +P+ T Sbjct 196 EIKPIDT 202 >gi|238784485|ref|ZP_04628494.1| Multidrug resistance protein B [Yersinia bercovieri ATCC 43970] gi|238714654|gb|EEQ06657.1| Multidrug resistance protein B [Yersinia bercovieri ATCC 43970] Length=511 Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust. Identities = 41/127 (33%), Positives = 58/127 (46%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF GL A+A + G+ L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWATGLFALASWLCGISNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S ++ I G I+ YI G +F + L+V A LK T T Sbjct 136 SMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLVVILMAGSTLKGRETKT 195 Query 138 E-EPVAT 143 E +P+ T Sbjct 196 EIKPIDT 202 >gi|322821653|gb|EFZ27917.1| DNA repair protein, putative [Trypanosoma cruzi] Length=450 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 27/92 (30%), Positives = 41/92 (45%), Gaps = 3/92 (3%) Query 57 LLNALLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIAYIFRPAGLGVVFGLAF 116 LL +LV S + +T K P ++ N + +I + + +F PAG G AF Sbjct 83 LLQKVLVTLSTQHVTRKHTPTSLEVSRND---FGLASISRTVESLLFLPAGEGSAPAEAF 139 Query 117 FQVLLVATTALPVLKKLRTATEEPVATYSSNG 148 + L TT P L L + +A +SNG Sbjct 140 YGSSLFFTTGCPSLDHLLSGGNGALAKDASNG 171 >gi|238795638|ref|ZP_04639153.1| Multidrug resistance protein B [Yersinia mollaretii ATCC 43969] gi|238720757|gb|EEQ12558.1| Multidrug resistance protein B [Yersinia mollaretii ATCC 43969] Length=511 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 41/127 (33%), Positives = 58/127 (46%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF GL A+A + G+ L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWATGLFALASWLCGISNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S ++ I G I+ YI G +F + L+V A LK T T Sbjct 136 SMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLVVILMAGSTLKGRETKT 195 Query 138 E-EPVAT 143 E +P+ T Sbjct 196 EIKPIDT 202 >gi|290985463|ref|XP_002675445.1| abc transporter [Naegleria gruberi] gi|284089041|gb|EFC42701.1| abc transporter [Naegleria gruberi] Length=654 Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust. Identities = 44/166 (27%), Positives = 75/166 (46%), Gaps = 25/166 (15%) Query 2 TTPAQDAPLVFPSVAFRPVRL----FFINVGLAAVAMLVAGVFGHLTVGMFLG--LGLLL 55 T P +PL F S FR L + + +G +L+ G TV M + LGL+L Sbjct 33 TIPTSRSPLKFISNFFRGSSLSQLKWLLGLGFTQWHLLLVG-----TVAMLISTVLGLVL 87 Query 56 GLLNALLVRRSAESITAKEHPLKRSMALNSASRLAIITILGLIIA-----YIFRPAGLGV 110 L LV +++T+++ K LN+A+ ++ + G+ I + F AG V Sbjct 88 PLFLTNLVDVIPQALTSEDGDEKGEKYLNTAALYLLLAVFGIAITTAIKHFCFSFAGERV 147 Query 111 VFGL--AFFQVLLV-------ATTALPVLKKLRTATEEPVATYSSN 147 V GL F+ +++ +T +L +L + T+ A +SN Sbjct 148 VAGLRKELFETMIIQDVSFFDSTKTGELLNRLSSDTKSLEAAVTSN 193 >gi|317490896|ref|ZP_07949332.1| H+ antiporter-1 family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920443|gb|EFV41766.1| H+ antiporter-1 family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length=511 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 40/130 (31%), Positives = 60/130 (47%), Gaps = 5/130 (3%) Query 17 FRPVRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHP 76 F VRLF + L A A + G+ L + +F + L G++ L+ S + + P Sbjct 75 FGEVRLFLWSTILFAAASWLCGISSSLEMLIFFRV--LQGIVAGPLIPLSQSLLLSNYPP 132 Query 77 LKRSMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLR 134 KRSMAL S I+ I G ++ YI G +F + + VA A+ LK Sbjct 133 AKRSMALAMWSMTVIVAPICGPVLGGYISDNYHWGWIFFINVPLGIAVALVAMSTLKGRE 192 Query 135 TATE-EPVAT 143 T TE +P+ T Sbjct 193 TKTEIKPIDT 202 >gi|238752955|ref|ZP_04614416.1| Multidrug resistance protein B [Yersinia rohdei ATCC 43380] gi|238708816|gb|EEQ01073.1| Multidrug resistance protein B [Yersinia rohdei ATCC 43380] Length=511 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 40/127 (32%), Positives = 57/127 (45%), Gaps = 5/127 (3%) Query 20 VRLFFINVGLAAVAMLVAGVFGHLTVGMFLGLGLLLGLLNALLVRRSAESITAKEHPLKR 79 VRLF + GL +A + G+ L GM + ++ GL+ L+ S + P KR Sbjct 78 VRLFLWSTGLFVLASWLCGISNSL--GMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKR 135 Query 80 SMALNSASRLAIIT-ILGLII-AYIFRPAGLGVVFGLAFFQVLLVATTALPVLKKLRTAT 137 SMAL S ++ I G I+ YI G +F + L+V A LK T T Sbjct 136 SMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLVVILVASSTLKGRETKT 195 Query 138 E-EPVAT 143 E P+ T Sbjct 196 EIRPIDT 202 >gi|194335236|ref|YP_002017030.1| major facilitator superfamily protein [Pelodictyon phaeoclathratiforme BU-1] gi|194307713|gb|ACF42413.1| major facilitator superfamily MFS_1 [Pelodictyon phaeoclathratiforme BU-1] Length=433 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 47/141 (34%), Positives = 66/141 (47%), Gaps = 28/141 (19%) Query 33 AMLVA---GVF---GHLTVGMFLGLGLLLGLLNALLV---RRSAESITAKEHPLKRSMAL 83 AML+A G+F G +T+ + L L LLG +NAL V + I +EH L ++A+ Sbjct 110 AMLLAFVLGLFAVTGTVTIWIILVLSFLLGCVNALNVPALQAFLSEIVEREH-LASAIAM 168 Query 84 NSA----SRLAIITILGLIIAYIFRPAGLGVVF---GLAFFQVLLVATTALPVLKKLRTA 136 NSA SR+ I G +I+ G G F G++FF V+L L ++ Sbjct 169 NSAIYNGSRVIGPAIAGFLIS----ATGTGTAFLLNGVSFFAVIL-------SLLSMKNT 217 Query 137 TEEPVATYSSNGQTGGSEGRS 157 EP A S N EG S Sbjct 218 LIEPAAKTSQNPLQSIREGLS 238 Lambda K H 0.325 0.139 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131112251088 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40