BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1305

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|148822523|ref|YP_001287277.1|  F0F1 ATP synthase subunit C [My...   154    3e-36
gi|15608445|ref|NP_215821.1|  F0F1 ATP synthase subunit C [Mycoba...   153    9e-36
gi|118619163|ref|YP_907495.1|  F0F1 ATP synthase subunit C [Mycob...   152    1e-35
gi|56266612|emb|CAI26297.1|  ATP synthase c chain [Mycobacterium ...   151    4e-35
gi|15827571|ref|NP_301834.1|  F0F1 ATP synthase subunit C [Mycoba...   117    7e-25
gi|87247475|gb|ABD35820.1|  AtpE [Mycobacterium aurum]                 116    9e-25
gi|145222901|ref|YP_001133579.1|  F0F1 ATP synthase subunit C [My...   115    2e-24
gi|108800845|ref|YP_641042.1|  F0F1 ATP synthase subunit C [Mycob...   114    6e-24
gi|169628539|ref|YP_001702188.1|  F0F1 ATP synthase subunit C [My...   111    4e-23
gi|83588796|gb|ABC24994.1|  subunit c of ATP synthase [Mycobacter...   110    9e-23
gi|296139995|ref|YP_003647238.1|  ATP synthase F0 subunit chi [Ts...   102    3e-20
gi|83588794|gb|ABC24993.1|  subunit c of ATP synthase [Mycobacter...   101    4e-20
gi|41408554|ref|NP_961390.1|  F0F1 ATP synthase subunit C [Mycoba...   100    7e-20
gi|296138977|ref|YP_003646220.1|  ATP synthase F0 subunit chi [Ts...  99.0    2e-19
gi|254774344|ref|ZP_05215860.1|  F0F1 ATP synthase subunit C [Myc...  95.1    3e-18
gi|87247483|gb|ABD35824.1|  AtpE [Mycobacterium fortuitum]            95.1    3e-18
gi|87247481|gb|ABD35823.1|  AtpE [Mycobacterium peregrinum]           95.1    3e-18
gi|56266614|emb|CAI26298.1|  ATP synthase c chain [Mycobacterium ...  95.1    3e-18
gi|118467835|ref|YP_889193.1|  F0F1 ATP synthase subunit C [Mycob...  95.1    3e-18
gi|343928066|ref|ZP_08767531.1|  ATP synthase subunit c [Gordonia...  94.4    5e-18
gi|120405287|ref|YP_955116.1|  F0F1 ATP synthase subunit C [Mycob...  92.8    1e-17
gi|262201855|ref|YP_003273063.1|  ATP synthase F0 subunit C [Gord...  92.4    2e-17
gi|117927856|ref|YP_872407.1|  F0F1 ATP synthase subunit C [Acido...  77.0    8e-13
gi|296393123|ref|YP_003658007.1|  ATP synthase F0 subunit C [Segn...  75.1    3e-12
gi|317506173|ref|ZP_07963994.1|  ATP synthase subunit C protein [...  75.1    3e-12
gi|255658911|ref|ZP_05404320.1|  ATP synthase F0, C subunit [Mits...  68.9    2e-10
gi|313896946|ref|ZP_07830493.1|  ATP synthase F0, C subunit [Sele...  68.2    4e-10
gi|331695528|ref|YP_004331767.1|  ATP synthase subunit c [Pseudon...  67.8    5e-10
gi|334127137|ref|ZP_08501066.1|  ATP synthase F0 sector subunit C...  67.4    6e-10
gi|238927820|ref|ZP_04659580.1|  H(+)-transporting two-sector ATP...  67.4    6e-10
gi|260886474|ref|ZP_05897737.1|  ATP synthase F0, C subunit [Sele...  65.1    4e-09
gi|292670136|ref|ZP_06603562.1|  H(+)-transporting two-sector ATP...  65.1    4e-09
gi|291534222|emb|CBL07335.1|  ATP synthase F0 subcomplex C subuni...  63.9    8e-09
gi|342214239|ref|ZP_08706940.1|  ATP synthase F0, C subunit [Veil...  62.8    1e-08
gi|323140889|ref|ZP_08075802.1|  ATP synthase F0, C subunit [Phas...  60.1    1e-07
gi|261856904|ref|YP_003264187.1|  ATP synthase F0 C subunit [Halo...  58.9    2e-07
gi|11467019|ref|NP_041926.1|  ATP synthase CF0 C subunit [Euglena...  58.9    3e-07
gi|113170456|ref|YP_717248.1|  AtpH [Ostreococcus tauri] >gi|1128...  58.5    3e-07
gi|224178031|ref|YP_002600943.1|  CF0 subunit III of ATP synthase...  58.2    4e-07
gi|226968662|ref|YP_002808622.1|  ATP synthase CF0 subunit C [Mic...  57.8    6e-07
gi|290969218|ref|ZP_06560743.1|  ATP synthase F0, C subunit [Mega...  57.0    9e-07
gi|224179487|ref|YP_002601012.1|  CF0 subunit III of ATP synthase...  56.6    1e-06
gi|334144692|ref|YP_004537848.1|  ATP synthase subunit c [Thioalk...  56.6    1e-06
gi|88811298|ref|ZP_01126554.1|  ATP synthase F0, C subunit [Nitro...  56.2    1e-06
gi|78486507|ref|YP_392432.1|  ATP synthase F0, C subunit [Thiomic...  56.2    2e-06
gi|114777378|ref|ZP_01452375.1|  ATP synthase F0, C subunit [Mari...  56.2    2e-06
gi|118411027|ref|YP_874422.1|  ATP synthase CF0 C chain subunit I...  55.8    2e-06
gi|298370412|ref|ZP_06981728.1|  ATP synthase F0, C subunit [Neis...  55.8    2e-06
gi|294668633|ref|ZP_06733729.1|  ATP synthase F0, C subunit [Neis...  55.5    3e-06
gi|294789018|ref|ZP_06754258.1|  ATP synthase F0, C subunit [Simo...  55.1    3e-06


>gi|148822523|ref|YP_001287277.1| F0F1 ATP synthase subunit C [Mycobacterium tuberculosis F11]
 gi|253799649|ref|YP_003032650.1| ATP synthase subunit C atpE [Mycobacterium tuberculosis KZN 1435]
 gi|254231563|ref|ZP_04924890.1| ATP synthase C chain atpE (lipid-binding protein) [Mycobacterium 
tuberculosis C]
 14 more sequence titles
 Length=95

 Score =  154 bits (390),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV
Sbjct  15  MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  74

Query  61  EAAYFINLAFMALFVFATPVK  81
           EAAYFINLAFMALFVFATPVK
Sbjct  75  EAAYFINLAFMALFVFATPVK  95


>gi|15608445|ref|NP_215821.1| F0F1 ATP synthase subunit C [Mycobacterium tuberculosis H37Rv]
 gi|15840756|ref|NP_335793.1| F0F1 ATP synthase subunit C [Mycobacterium tuberculosis CDC1551]
 gi|31792498|ref|NP_854991.1| F0F1 ATP synthase subunit C [Mycobacterium bovis AF2122/97]
 68 more sequence titles
 Length=81

 Score =  153 bits (386),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV
Sbjct  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60

Query  61  EAAYFINLAFMALFVFATPVK  81
           EAAYFINLAFMALFVFATPVK
Sbjct  61  EAAYFINLAFMALFVFATPVK  81


>gi|118619163|ref|YP_907495.1| F0F1 ATP synthase subunit C [Mycobacterium ulcerans Agy99]
 gi|183984063|ref|YP_001852354.1| ATP synthase C chain AtpE [Mycobacterium marinum M]
 gi|254810013|sp|B2HQK7.1|ATPL_MYCMM RecName: Full=ATP synthase subunit c; AltName: Full=ATP synthase 
F(0) sector subunit c; AltName: Full=F-type ATPase subunit 
c; Short=F-ATPase subunit c; AltName: Full=Lipid-binding 
protein
 gi|254810017|sp|A0PUK5.1|ATPL_MYCUA RecName: Full=ATP synthase subunit c; AltName: Full=ATP synthase 
F(0) sector subunit c; AltName: Full=F-type ATPase subunit 
c; Short=F-ATPase subunit c; AltName: Full=Lipid-binding 
protein
 gi|83588802|gb|ABC24997.1| subunit c of ATP synthase [Mycobacterium ulcerans]
 gi|83588804|gb|ABC24998.1| subunit c of ATP synthase [Mycobacterium marinum]
 gi|118571273|gb|ABL06024.1| ATP synthase C chain AtpE [Mycobacterium ulcerans Agy99]
 gi|183177389|gb|ACC42499.1| ATP synthase C chain AtpE [Mycobacterium marinum M]
Length=81

 Score =  152 bits (385),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 80/81 (99%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDPTIAAGALIGGGLIMAGGAIGAGIGDG+AGNALISGVARQPEAQGRLFTPFFITVGLV
Sbjct  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGIAGNALISGVARQPEAQGRLFTPFFITVGLV  60

Query  61  EAAYFINLAFMALFVFATPVK  81
           EAAYFINLAFMALFVFATPVK
Sbjct  61  EAAYFINLAFMALFVFATPVK  81


>gi|56266612|emb|CAI26297.1| ATP synthase c chain [Mycobacterium tuberculosis]
Length=81

 Score =  151 bits (381),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 80/81 (99%), Positives = 80/81 (99%), Gaps = 0/81 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV
Sbjct  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60

Query  61  EAAYFINLAFMALFVFATPVK  81
           EA YFINLAFMALFVFATPVK
Sbjct  61  EAPYFINLAFMALFVFATPVK  81


>gi|15827571|ref|NP_301834.1| F0F1 ATP synthase subunit C [Mycobacterium leprae TN]
 gi|221230048|ref|YP_002503464.1| F0F1 ATP synthase subunit C [Mycobacterium leprae Br4923]
 gi|1168603|sp|P45828.1|ATPL_MYCLE RecName: Full=ATP synthase subunit c; AltName: Full=ATP synthase 
F(0) sector subunit c; AltName: Full=F-type ATPase subunit 
c; Short=F-ATPase subunit c; AltName: Full=Lipid-binding 
protein
 gi|254810012|sp|B8ZR37.1|ATPL_MYCLB RecName: Full=ATP synthase subunit c; AltName: Full=ATP synthase 
F(0) sector subunit c; AltName: Full=F-type ATPase subunit 
c; Short=F-ATPase subunit c; AltName: Full=Lipid-binding 
protein
 gi|699346|gb|AAA63107.1| atpE [Mycobacterium leprae]
 gi|13093121|emb|CAC31521.1| probable ATP synthase C chain [Mycobacterium leprae]
 gi|83588800|gb|ABC24996.1| subunit c of ATP synthase [Mycobacterium leprae]
 gi|219933155|emb|CAR71235.1| probable ATP synthase C chain [Mycobacterium leprae Br4923]
Length=81

 Score =  117 bits (292),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 75/81 (93%), Positives = 78/81 (97%), Gaps = 0/81 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDP IA GALIGGGLIMAGGAIGAGIGDG+AGNAL+SG+ARQPEAQ RLFTPFFITVGLV
Sbjct  1   MDPMIAQGALIGGGLIMAGGAIGAGIGDGMAGNALVSGIARQPEAQSRLFTPFFITVGLV  60

Query  61  EAAYFINLAFMALFVFATPVK  81
           EAAYFINLAFMALFVFATPVK
Sbjct  61  EAAYFINLAFMALFVFATPVK  81


>gi|87247475|gb|ABD35820.1| AtpE [Mycobacterium aurum]
Length=81

 Score =  116 bits (291),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 78/81 (97%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDPTIAAGALIGGGLIMAGGAIGAGIGDG+AGNALI+G+ARQPEAQGRLFTPFFITVGLV
Sbjct  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGIAGNALIAGIARQPEAQGRLFTPFFITVGLV  60

Query  61  EAAYFINLAFMALFVFATPVK  81
           EAAYFINLAFMALFVFATPVK
Sbjct  61  EAAYFINLAFMALFVFATPVK  81


>gi|145222901|ref|YP_001133579.1| F0F1 ATP synthase subunit C [Mycobacterium gilvum PYR-GCK]
 gi|315443366|ref|YP_004076245.1| ATP synthase F0 subcomplex C subunit [Mycobacterium sp. Spyr1]
 gi|333989944|ref|YP_004522558.1| ATP synthase C chain AtpE [Mycobacterium sp. JDM601]
 gi|254810011|sp|A4T8K8.1|ATPL_MYCGI RecName: Full=ATP synthase subunit c; AltName: Full=ATP synthase 
F(0) sector subunit c; AltName: Full=F-type ATPase subunit 
c; Short=F-ATPase subunit c; AltName: Full=Lipid-binding 
protein
 gi|145215387|gb|ABP44791.1| ATP synthase F0 subcomplex C subunit [Mycobacterium gilvum PYR-GCK]
 gi|315261669|gb|ADT98410.1| ATP synthase F0 subcomplex C subunit [Mycobacterium sp. Spyr1]
 gi|333485912|gb|AEF35304.1| ATP synthase C chain AtpE [Mycobacterium sp. JDM601]
Length=81

 Score =  115 bits (287),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 78/80 (98%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDPTIAAGALIGGGLIMAGGAIGAGIGDG+AGNALISG+ARQPEAQGRLFTPFFITVGLV
Sbjct  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGIAGNALISGIARQPEAQGRLFTPFFITVGLV  60

Query  61  EAAYFINLAFMALFVFATPV  80
           EAAYFINLAFMALFVFATPV
Sbjct  61  EAAYFINLAFMALFVFATPV  80


>gi|108800845|ref|YP_641042.1| F0F1 ATP synthase subunit C [Mycobacterium sp. MCS]
 gi|119869985|ref|YP_939937.1| F0F1 ATP synthase subunit C [Mycobacterium sp. KMS]
 gi|126436443|ref|YP_001072134.1| F0F1 ATP synthase subunit C [Mycobacterium sp. JLS]
 6 more sequence titles
 Length=81

 Score =  114 bits (284),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 77/80 (97%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDPTIAAGALIGGGLIMAGGAIGAGIGDG+AGNALI+G+ARQPEAQGRLFTPFFITVGLV
Sbjct  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGIAGNALIAGIARQPEAQGRLFTPFFITVGLV  60

Query  61  EAAYFINLAFMALFVFATPV  80
           EAAYFINLAFMALFVFATPV
Sbjct  61  EAAYFINLAFMALFVFATPV  80


>gi|169628539|ref|YP_001702188.1| F0F1 ATP synthase subunit C [Mycobacterium abscessus ATCC 19977]
 gi|83588806|gb|ABC24999.1| subunit c of ATP synthase [Mycobacterium abscessus]
 gi|169240506|emb|CAM61534.1| ATP synthase C chain AtpE [Mycobacterium abscessus]
Length=83

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 76/78 (98%), Positives = 77/78 (99%), Gaps = 0/78 (0%)

Query  2   DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVE  61
           DPTI AGALIGGGLIMAGGAIGAGIGDG+AGNALISGVARQPEAQGRLFTPFFITVGLVE
Sbjct  3   DPTIVAGALIGGGLIMAGGAIGAGIGDGIAGNALISGVARQPEAQGRLFTPFFITVGLVE  62

Query  62  AAYFINLAFMALFVFATP  79
           AAYFINLAFMALFVFATP
Sbjct  63  AAYFINLAFMALFVFATP  80


>gi|83588796|gb|ABC24994.1| subunit c of ATP synthase [Mycobacterium chelonae]
Length=83

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 75/78 (97%), Positives = 76/78 (98%), Gaps = 0/78 (0%)

Query  2   DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVE  61
           DPTI AGALIGGGLIMAGGAIGAGIGDG+AGNALISGVARQPEAQ RLFTPFFITVGLVE
Sbjct  3   DPTIVAGALIGGGLIMAGGAIGAGIGDGIAGNALISGVARQPEAQSRLFTPFFITVGLVE  62

Query  62  AAYFINLAFMALFVFATP  79
           AAYFINLAFMALFVFATP
Sbjct  63  AAYFINLAFMALFVFATP  80


>gi|296139995|ref|YP_003647238.1| ATP synthase F0 subunit chi [Tsukamurella paurometabola DSM 20162]
 gi|296028129|gb|ADG78899.1| ATP synthase F0, C subunit [Tsukamurella paurometabola DSM 20162]
Length=89

 Score =  102 bits (253),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 53/80 (67%), Positives = 61/80 (77%), Gaps = 0/80 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           ++  I AGAL  GG+I+ G A+G GIG+GVAG  L+ GVARQP A  RL  PFFITV LV
Sbjct  7   VNAIITAGALGAGGMILGGAAVGTGIGNGVAGARLVEGVARQPSAANRLLQPFFITVSLV  66

Query  61  EAAYFINLAFMALFVFATPV  80
           EA YFINLAFMA+ VFATPV
Sbjct  67  EAVYFINLAFMAMIVFATPV  86


>gi|83588794|gb|ABC24993.1| subunit c of ATP synthase [Mycobacterium xenopi]
Length=84

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 50/52 (97%), Positives = 51/52 (99%), Gaps = 0/52 (0%)

Query  30  VAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPVK  81
           VAGNALISG+ARQPEAQGRLFTPFFITVGLVEA YFINLAFMALFVFATPVK
Sbjct  33  VAGNALISGIARQPEAQGRLFTPFFITVGLVEAMYFINLAFMALFVFATPVK  84


>gi|41408554|ref|NP_961390.1| F0F1 ATP synthase subunit C [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118467104|ref|YP_880761.1| F0F1 ATP synthase subunit C [Mycobacterium avium 104]
 gi|296170246|ref|ZP_06851839.1| ATP synthase F0 sector subunit C [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 6 more sequence titles
 Length=84

 Score =  100 bits (249),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 72/80 (90%), Positives = 77/80 (97%), Gaps = 0/80 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           +DP +AA ALIGGGLIM GGAIGAGIGDG+AGNAL+SG+ARQPEAQGRLFTPFFITVGLV
Sbjct  3   LDPQVAAAALIGGGLIMGGGAIGAGIGDGIAGNALVSGIARQPEAQGRLFTPFFITVGLV  62

Query  61  EAAYFINLAFMALFVFATPV  80
           EAAYFINLAFMALFVFATPV
Sbjct  63  EAAYFINLAFMALFVFATPV  82


>gi|296138977|ref|YP_003646220.1| ATP synthase F0 subunit chi [Tsukamurella paurometabola DSM 20162]
 gi|296027111|gb|ADG77881.1| ATP synthase F0, C subunit [Tsukamurella paurometabola DSM 20162]
Length=81

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 68/81 (84%), Positives = 75/81 (93%), Gaps = 0/81 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDP IA GALIGGGLIM GGAIGAGIG+G+AG+ L++G+ARQPEAQGRL TPFFITVGLV
Sbjct  1   MDPNIAQGALIGGGLIMGGGAIGAGIGNGLAGSQLVAGIARQPEAQGRLMTPFFITVGLV  60

Query  61  EAAYFINLAFMALFVFATPVK  81
           EAAYFINLAFMALFVFATP+ 
Sbjct  61  EAAYFINLAFMALFVFATPIS  81


>gi|254774344|ref|ZP_05215860.1| F0F1 ATP synthase subunit C [Mycobacterium avium subsp. avium 
ATCC 25291]
 gi|254821304|ref|ZP_05226305.1| F0F1 ATP synthase subunit C [Mycobacterium intracellulare ATCC 
13950]
 gi|342858034|ref|ZP_08714690.1| F0F1 ATP synthase subunit C [Mycobacterium colombiense CECT 3035]
 gi|342135367|gb|EGT88533.1| F0F1 ATP synthase subunit C [Mycobacterium colombiense CECT 3035]
Length=66

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 46/48 (96%), Positives = 48/48 (100%), Gaps = 0/48 (0%)

Query  33  NALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPV  80
           NAL+SG+ARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPV
Sbjct  17  NALVSGIARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPV  64


>gi|87247483|gb|ABD35824.1| AtpE [Mycobacterium fortuitum]
Length=86

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 73/81 (91%), Positives = 76/81 (94%), Gaps = 2/81 (2%)

Query  1   MDPT--IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVG  58
           +DP   I AGALIGGGLIM GGAIGAGIGDG+AGNALISG+ARQPEAQGRLFTPFFITVG
Sbjct  3   LDPNALITAGALIGGGLIMGGGAIGAGIGDGIAGNALISGIARQPEAQGRLFTPFFITVG  62

Query  59  LVEAAYFINLAFMALFVFATP  79
           LVEAAYFINLAFMALFVFATP
Sbjct  63  LVEAAYFINLAFMALFVFATP  83


>gi|87247481|gb|ABD35823.1| AtpE [Mycobacterium peregrinum]
Length=86

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 73/81 (91%), Positives = 76/81 (94%), Gaps = 2/81 (2%)

Query  1   MDPT--IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVG  58
           +DP   I AGALIGGGLIM GGAIGAGIGDG+AGNALISG+ARQPEAQGRLFTPFFITVG
Sbjct  3   LDPNALITAGALIGGGLIMGGGAIGAGIGDGIAGNALISGIARQPEAQGRLFTPFFITVG  62

Query  59  LVEAAYFINLAFMALFVFATP  79
           LVEAAYFINLAFMALFVFATP
Sbjct  63  LVEAAYFINLAFMALFVFATP  83


>gi|56266614|emb|CAI26298.1| ATP synthase c chain [Mycobacterium smegmatis]
 gi|56266616|emb|CAI26299.1| ATP synthase c chain [Mycobacterium smegmatis]
Length=86

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 72/81 (89%), Positives = 75/81 (93%), Gaps = 2/81 (2%)

Query  1   MDPT--IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVG  58
           +DP   I AGALIGGGLIM GGAIGAGIG G+AGNALISG+ARQPEAQGRLFTPFFITVG
Sbjct  3   LDPNAIITAGALIGGGLIMGGGAIGAGIGVGIAGNALISGIARQPEAQGRLFTPFFITVG  62

Query  59  LVEAAYFINLAFMALFVFATP  79
           LVEAAYFINLAFMALFVFATP
Sbjct  63  LVEAAYFINLAFMALFVFATP  83


>gi|118467835|ref|YP_889193.1| F0F1 ATP synthase subunit C [Mycobacterium smegmatis str. MC2 
155]
 gi|55859452|emb|CAH89265.1| hypothetical protein [Mycobacterium smegmatis]
 gi|83588792|gb|ABC24992.1| subunit c of ATP synthase [Mycobacterium smegmatis]
 gi|118169122|gb|ABK70018.1| ATP synthase F0, C subunit [Mycobacterium smegmatis str. MC2 
155]
Length=86

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 73/81 (91%), Positives = 76/81 (94%), Gaps = 2/81 (2%)

Query  1   MDPT--IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVG  58
           +DP   I AGALIGGGLIM GGAIGAGIGDG+AGNALISG+ARQPEAQGRLFTPFFITVG
Sbjct  3   LDPNAIITAGALIGGGLIMGGGAIGAGIGDGIAGNALISGIARQPEAQGRLFTPFFITVG  62

Query  59  LVEAAYFINLAFMALFVFATP  79
           LVEAAYFINLAFMALFVFATP
Sbjct  63  LVEAAYFINLAFMALFVFATP  83


>gi|343928066|ref|ZP_08767531.1| ATP synthase subunit c [Gordonia alkanivorans NBRC 16433]
 gi|343762074|dbj|GAA14457.1| ATP synthase subunit c [Gordonia alkanivorans NBRC 16433]
Length=83

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 69/81 (86%), Positives = 76/81 (94%), Gaps = 0/81 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDP I  GALIGGGLIMAGGA+GAGIG+G+AG+ LI+G+ARQPEAQGRLFTPFFITVGLV
Sbjct  1   MDPYIGLGALIGGGLIMAGGAVGAGIGNGLAGSQLIAGIARQPEAQGRLFTPFFITVGLV  60

Query  61  EAAYFINLAFMALFVFATPVK  81
           EAAYFINLAFMALFVFATP+ 
Sbjct  61  EAAYFINLAFMALFVFATPIS  81


>gi|120405287|ref|YP_955116.1| F0F1 ATP synthase subunit C [Mycobacterium vanbaalenii PYR-1]
 gi|119958105|gb|ABM15110.1| ATP synthase F0 subcomplex C subunit [Mycobacterium vanbaalenii 
PYR-1]
Length=86

 Score = 92.8 bits (229),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 72/81 (89%), Positives = 76/81 (94%), Gaps = 2/81 (2%)

Query  1   MDPT--IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVG  58
           +DP   I AGALIGGGLIM GGAIGAGIGDG+AGNALI+G+ARQPEAQGRLFTPFFITVG
Sbjct  3   IDPNAIITAGALIGGGLIMGGGAIGAGIGDGIAGNALIAGIARQPEAQGRLFTPFFITVG  62

Query  59  LVEAAYFINLAFMALFVFATP  79
           LVEAAYFINLAFMALFVFATP
Sbjct  63  LVEAAYFINLAFMALFVFATP  83


>gi|262201855|ref|YP_003273063.1| ATP synthase F0 subunit C [Gordonia bronchialis DSM 43247]
 gi|262085202|gb|ACY21170.1| ATP synthase F0, C subunit [Gordonia bronchialis DSM 43247]
Length=88

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 45/52 (87%), Positives = 49/52 (95%), Gaps = 0/52 (0%)

Query  30  VAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPVK  81
           +AG  LI+G+ARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATP+ 
Sbjct  31  LAGAQLIAGIARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPIS  82


>gi|117927856|ref|YP_872407.1| F0F1 ATP synthase subunit C [Acidothermus cellulolyticus 11B]
 gi|117648319|gb|ABK52421.1| ATP synthase F0 subcomplex C subunit [Acidothermus cellulolyticus 
11B]
Length=87

 Score = 77.0 bits (188),  Expect = 8e-13, Method: Compositional matrix adjust.
 Identities = 38/49 (78%), Positives = 42/49 (86%), Gaps = 0/49 (0%)

Query  28  DGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVF  76
           DG+AG   I+GVARQPE+QGRL   FF+TVGLVEA YFINLAFMALFVF
Sbjct  35  DGLAGAQTIAGVARQPESQGRLMPLFFLTVGLVEAMYFINLAFMALFVF  83


>gi|296393123|ref|YP_003658007.1| ATP synthase F0 subunit C [Segniliparus rotundus DSM 44985]
 gi|296180270|gb|ADG97176.1| ATP synthase F0, C subunit [Segniliparus rotundus DSM 44985]
Length=91

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 44/52 (85%), Positives = 46/52 (89%), Gaps = 0/52 (0%)

Query  28  DGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATP  79
           DG+AG  LI+GVARQPEAQGRLFTPFFITVGL EA YFINLAFMA F FATP
Sbjct  34  DGLAGGQLIAGVARQPEAQGRLFTPFFITVGLCEAMYFINLAFMAFFAFATP  85


>gi|317506173|ref|ZP_07963994.1| ATP synthase subunit C protein [Segniliparus rugosus ATCC BAA-974]
 gi|316255518|gb|EFV14767.1| ATP synthase subunit C protein [Segniliparus rugosus ATCC BAA-974]
Length=91

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 44/52 (85%), Positives = 46/52 (89%), Gaps = 0/52 (0%)

Query  28  DGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATP  79
           DG+AG  LI+GVARQPEAQGRLFTPFFITVGL EA YFINLAFMA F FATP
Sbjct  34  DGLAGGQLIAGVARQPEAQGRLFTPFFITVGLCEAMYFINLAFMAFFAFATP  85


>gi|255658911|ref|ZP_05404320.1| ATP synthase F0, C subunit [Mitsuokella multacida DSM 20544]
 gi|260848861|gb|EEX68868.1| ATP synthase F0, C subunit [Mitsuokella multacida DSM 20544]
Length=83

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 34/79 (44%), Positives = 49/79 (63%), Gaps = 0/79 (0%)

Query  2   DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVE  61
           +  + A AL+G GL M   AIGAG+GDG+  +  I G+ RQPEAQ +LFT   I+VGL+E
Sbjct  3   NAIMVAAALVGAGLCMGLAAIGAGLGDGLVTSRFIEGITRQPEAQSKLFTNTLISVGLIE  62

Query  62  AAYFINLAFMALFVFATPV  80
           +   I      + ++A P+
Sbjct  63  SMAIIATVVALIMLYANPL  81


>gi|313896946|ref|ZP_07830493.1| ATP synthase F0, C subunit [Selenomonas sp. oral taxon 137 str. 
F0430]
 gi|320529509|ref|ZP_08030594.1| ATP synthase F0, C subunit [Selenomonas artemidis F0399]
 gi|312974393|gb|EFR39861.1| ATP synthase F0, C subunit [Selenomonas sp. oral taxon 137 str. 
F0430]
 gi|320138220|gb|EFW30117.1| ATP synthase F0, C subunit [Selenomonas artemidis F0399]
Length=83

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 36/79 (46%), Positives = 49/79 (63%), Gaps = 0/79 (0%)

Query  2   DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVE  61
           +  + A ALIG G+ M   AIGAGIGDG+  +  I G+ RQPEA+G LFT   I+VGL+E
Sbjct  3   NAIMVAAALIGAGITMGLAAIGAGIGDGLVTSKFIEGITRQPEAKGVLFTNTLISVGLIE  62

Query  62  AAYFINLAFMALFVFATPV  80
           A   I      + ++A P+
Sbjct  63  AMAIIATVVALIMLYANPL  81


>gi|331695528|ref|YP_004331767.1| ATP synthase subunit c [Pseudonocardia dioxanivorans CB1190]
 gi|326950217|gb|AEA23914.1| ATP synthase subunit c [Pseudonocardia dioxanivorans CB1190]
Length=91

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 33/47 (71%), Positives = 38/47 (81%), Gaps = 0/47 (0%)

Query  30  VAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVF  76
           +AG ++I GVARQPEA GRL T  F+ +GLVE  YFINLAFMALFVF
Sbjct  42  LAGASVIQGVARQPEAAGRLNTTMFLIIGLVEGMYFINLAFMALFVF  88


>gi|334127137|ref|ZP_08501066.1| ATP synthase F0 sector subunit C [Centipeda periodontii DSM 2778]
 gi|333389913|gb|EGK61068.1| ATP synthase F0 sector subunit C [Centipeda periodontii DSM 2778]
Length=83

 Score = 67.4 bits (163),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 39/79 (50%), Positives = 50/79 (64%), Gaps = 0/79 (0%)

Query  2   DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVE  61
           +  + AGALIG GL     AIGAGIGDG+     I G+ARQPEA G LFT   I+VGL+E
Sbjct  3   NAIMVAGALIGAGLCFGLAAIGAGIGDGLVTGRFIEGLARQPEAGGVLFTRTLISVGLIE  62

Query  62  AAYFINLAFMALFVFATPV  80
           A   I + F  + ++A P+
Sbjct  63  ALAIIGVVFGIIMLYANPL  81


>gi|238927820|ref|ZP_04659580.1| H(+)-transporting two-sector ATPase [Selenomonas flueggei ATCC 
43531]
 gi|304437796|ref|ZP_07397746.1| ATP synthase F0 sector subunit C [Selenomonas sp. oral taxon 
149 str. 67H29BP]
 gi|238884367|gb|EEQ48005.1| H(+)-transporting two-sector ATPase [Selenomonas flueggei ATCC 
43531]
 gi|304369244|gb|EFM22919.1| ATP synthase F0 sector subunit C [Selenomonas sp. oral taxon 
149 str. 67H29BP]
Length=83

 Score = 67.4 bits (163),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 39/79 (50%), Positives = 50/79 (64%), Gaps = 0/79 (0%)

Query  2   DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVE  61
           +  + AGALIG GL     AIGAGIGDG+     I G+ARQPEA G LFT   I+VGL+E
Sbjct  3   NAIMVAGALIGAGLCFGLAAIGAGIGDGLVTGRFIEGLARQPEAGGVLFTRTLISVGLIE  62

Query  62  AAYFINLAFMALFVFATPV  80
           A   I + F  + ++A P+
Sbjct  63  ALAIIGVVFGIIMLYANPL  81


>gi|260886474|ref|ZP_05897737.1| ATP synthase F0, C subunit [Selenomonas sputigena ATCC 35185]
 gi|330839678|ref|YP_004414258.1| ATP synthase F0, C subunit [Selenomonas sputigena ATCC 35185]
 gi|260863617|gb|EEX78117.1| ATP synthase F0, C subunit [Selenomonas sputigena ATCC 35185]
 gi|329747442|gb|AEC00799.1| ATP synthase F0, C subunit [Selenomonas sputigena ATCC 35185]
Length=84

 Score = 65.1 bits (157),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 35/79 (45%), Positives = 47/79 (60%), Gaps = 0/79 (0%)

Query  2   DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVE  61
           +  + A ALIG G+ M   AIGAGIGDG+     I G+ RQPEA+  LFT   I+VGL+E
Sbjct  3   NAIMVAAALIGAGITMGLAAIGAGIGDGLVTARFIEGITRQPEAKNALFTNTLISVGLIE  62

Query  62  AAYFINLAFMALFVFATPV  80
           A   I      + ++A P+
Sbjct  63  AMAIIATVVALIMLYANPL  81


>gi|292670136|ref|ZP_06603562.1| H(+)-transporting two-sector ATPase [Selenomonas noxia ATCC 43541]
 gi|292648235|gb|EFF66207.1| H(+)-transporting two-sector ATPase [Selenomonas noxia ATCC 43541]
Length=83

 Score = 65.1 bits (157),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 35/79 (45%), Positives = 49/79 (63%), Gaps = 0/79 (0%)

Query  2   DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVE  61
           +  + A ALIG G+     A+GA IGDG+  +  I G+ARQPEA+G LFT   I+VGL+E
Sbjct  3   NAIMVAAALIGAGITAGLAAVGAAIGDGLVTSRFIEGLARQPEARGTLFTNTLISVGLIE  62

Query  62  AAYFINLAFMALFVFATPV  80
           A   I +    L ++A P+
Sbjct  63  ALAIIAVVVALLMLYANPL  81


>gi|291534222|emb|CBL07335.1| ATP synthase F0 subcomplex C subunit [Megamonas hypermegale ART12/1]
Length=83

 Score = 63.9 bits (154),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 33/72 (46%), Positives = 45/72 (63%), Gaps = 0/72 (0%)

Query  9   ALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINL  68
           ALIG G+ M   +IGAGIGDG+  +  I G+ARQPEA+  LF    I+VGL+EA   I  
Sbjct  10  ALIGAGITMGLASIGAGIGDGLVTSKFIEGIARQPEAKNTLFMNTLISVGLIEAMPIIAT  69

Query  69  AFMALFVFATPV  80
               + ++A P+
Sbjct  70  VIALIMLYANPL  81


>gi|342214239|ref|ZP_08706940.1| ATP synthase F0, C subunit [Veillonella sp. oral taxon 780 str. 
F0422]
 gi|341594470|gb|EGS37159.1| ATP synthase F0, C subunit [Veillonella sp. oral taxon 780 str. 
F0422]
Length=90

 Score = 62.8 bits (151),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 34/73 (47%), Positives = 44/73 (61%), Gaps = 0/73 (0%)

Query  8   GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFIN  67
           G+ IG GL +   AIGAGIGDG+     + G+ RQPE  G+LFT   I+VGL+EA   I 
Sbjct  13  GSAIGAGLAIGLAAIGAGIGDGLVSGKALEGMTRQPEQSGKLFTNMLISVGLIEAVPIIA  72

Query  68  LAFMALFVFATPV  80
                + VFA P+
Sbjct  73  AVIAIVLVFANPL  85


>gi|323140889|ref|ZP_08075802.1| ATP synthase F0, C subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414627|gb|EFY05433.1| ATP synthase F0, C subunit [Phascolarctobacterium sp. YIT 12067]
Length=87

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 30/78 (39%), Positives = 44/78 (57%), Gaps = 0/78 (0%)

Query  2   DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVE  61
           +  I A ++IG GL+  G A+GAG G+G      I  +ARQPE  G++FT   + VGL+E
Sbjct  7   NAIITAASVIGAGLVCLGAAMGAGFGNGNMCGKSIESMARQPEESGKIFTNMLVCVGLIE  66

Query  62  AAYFINLAFMALFVFATP  79
           +   +      + VFA P
Sbjct  67  SMPILCYVIAIVLVFANP  84


>gi|261856904|ref|YP_003264187.1| ATP synthase F0 C subunit [Halothiobacillus neapolitanus c2]
 gi|261837373|gb|ACX97140.1| ATP synthase F0, C subunit [Halothiobacillus neapolitanus c2]
Length=95

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/79 (44%), Positives = 48/79 (61%), Gaps = 0/79 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           M  TI A   +G G+I+A   +G+ IG G+  +  + G+ARQPE + +L T  FI  GL+
Sbjct  5   MLATIYAYTAVGVGVILAAAGLGSAIGWGLICSKTLEGIARQPEMRPQLMTNMFIFAGLM  64

Query  61  EAAYFINLAFMALFVFATP  79
           E+  FI LAF   F+FA P
Sbjct  65  ESFPFIILAFAMWFLFANP  83


>gi|11467019|ref|NP_041926.1| ATP synthase CF0 C subunit [Euglena gracilis]
 gi|231611|sp|P10603.2|ATPH_EUGGR RecName: Full=ATP synthase subunit c, chloroplastic; AltName: 
Full=ATP synthase F(0) sector subunit c; AltName: Full=ATPase 
subunit III; AltName: Full=F-type ATPase subunit c; Short=F-ATPase 
subunit c; AltName: Full=Lipid-binding protein
 gi|14380|emb|CAA77930.1| ATP synthase CFo subunit III [Euglena gracilis]
 gi|415769|emb|CAA50113.1| ATP synthase, CF0-subunit III [Euglena gracilis]
Length=81

 Score = 58.9 bits (141),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 32/79 (41%), Positives = 45/79 (57%), Gaps = 0/79 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           M+P I A ++IG GL +  GAIG GIG G A    I G+ARQPEA+G++     +++  +
Sbjct  1   MNPIICAASVIGAGLAIGLGAIGPGIGQGTASGKAIEGLARQPEAEGKIRGTLLLSLAFM  60

Query  61  EAAYFINLAFMALFVFATP  79
           EA     L      +FA P
Sbjct  61  EALTIYGLVVALAIIFANP  79


>gi|113170456|ref|YP_717248.1| AtpH [Ostreococcus tauri]
 gi|112806863|emb|CAL36370.1| AtpH [Ostreococcus tauri]
Length=101

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 30/79 (38%), Positives = 45/79 (57%), Gaps = 0/79 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           M+P I A +++G GL +  GAIG GIG G A    + G+ARQPEA+G++     +++  +
Sbjct  20  MNPLICAASVVGAGLAIGLGAIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM  79

Query  61  EAAYFINLAFMALFVFATP  79
           EA     L      +FA P
Sbjct  80  EALTIYGLVVALALMFANP  98


>gi|224178031|ref|YP_002600943.1| CF0 subunit III of ATP synthase [Pyramimonas parkeae]
 gi|215882698|gb|ACJ71071.1| CF0 subunit III of ATP synthase [Pyramimonas parkeae]
Length=82

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 31/79 (40%), Positives = 45/79 (57%), Gaps = 0/79 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           M+P I A ++IG GL +  GAIG GIG G A    + G+ARQPEA+G++     +++  +
Sbjct  1   MNPLICAASVIGAGLAIGLGAIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM  60

Query  61  EAAYFINLAFMALFVFATP  79
           EA     L      +FA P
Sbjct  61  EALTIYGLVVALAIIFANP  79


>gi|226968662|ref|YP_002808622.1| ATP synthase CF0 subunit C [Micromonas sp. RCC299]
 gi|223635056|sp|Q0P3K7.2|ATPH_OSTTA RecName: Full=ATP synthase subunit c, chloroplastic; AltName: 
Full=ATP synthase F(0) sector subunit c; AltName: Full=ATPase 
subunit III; AltName: Full=F-type ATPase subunit c; Short=F-ATPase 
subunit c; AltName: Full=Lipid-binding protein
 gi|226431140|gb|ACO55546.1| ATP synthase CF0 subunit C [Micromonas sp. RCC299]
Length=82

 Score = 57.8 bits (138),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 30/79 (38%), Positives = 45/79 (57%), Gaps = 0/79 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           M+P I A +++G GL +  GAIG GIG G A    + G+ARQPEA+G++     +++  +
Sbjct  1   MNPLICAASVVGAGLAIGLGAIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM  60

Query  61  EAAYFINLAFMALFVFATP  79
           EA     L      +FA P
Sbjct  61  EALTIYGLVVALALMFANP  79


>gi|290969218|ref|ZP_06560743.1| ATP synthase F0, C subunit [Megasphaera genomosp. type_1 str. 
28L]
 gi|335049573|ref|ZP_08542563.1| ATP synthase F0, C subunit [Megasphaera sp. UPII 199-6]
 gi|290780724|gb|EFD93327.1| ATP synthase F0, C subunit [Megasphaera genomosp. type_1 str. 
28L]
 gi|333762833|gb|EGL40318.1| ATP synthase F0, C subunit [Megasphaera sp. UPII 199-6]
Length=85

 Score = 57.0 bits (136),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 35/74 (48%), Positives = 43/74 (59%), Gaps = 4/74 (5%)

Query  6   AAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYF  65
           A GA IG GL     A+GA IGDG A   ++ G ARQPE  G+LF    I+VGL+EA   
Sbjct  11  AMGAAIGMGL----AALGAAIGDGNAAAKMLEGTARQPEMAGKLFVNMLISVGLIEALPI  66

Query  66  INLAFMALFVFATP  79
           I +    + VFA P
Sbjct  67  IAVVIGIILVFANP  80


>gi|224179487|ref|YP_002601012.1| CF0 subunit III of ATP synthase [Monomastix sp. OKE-1]
 gi|217314530|gb|ACK36873.1| CF0 subunit III of ATP synthase [Monomastix sp. OKE-1]
Length=82

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 30/79 (38%), Positives = 45/79 (57%), Gaps = 0/79 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           M+P I A +++G GL +  GAIG GIG G A    + G+ARQPEA+G++     +++  +
Sbjct  1   MNPLIGAASVVGAGLAIGLGAIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM  60

Query  61  EAAYFINLAFMALFVFATP  79
           EA     L      +FA P
Sbjct  61  EALTIYGLVVALALLFANP  79


>gi|334144692|ref|YP_004537848.1| ATP synthase subunit c [Thioalkalimicrobium cyclicum ALM1]
 gi|333965603|gb|AEG32369.1| ATP synthase subunit c [Thioalkalimicrobium cyclicum ALM1]
Length=96

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 34/79 (44%), Positives = 46/79 (59%), Gaps = 0/79 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           M   I A   IG G+I+A   +G+ IG G+  +  + G+ARQPE +  L T  FI  GL+
Sbjct  7   MIADIYAATAIGVGVILAAAGLGSAIGWGLICSKTLEGIARQPEMRPALMTNMFIFAGLM  66

Query  61  EAAYFINLAFMALFVFATP  79
           E+  FI LAF   F+FA P
Sbjct  67  ESFPFIILAFAMWFLFANP  85


>gi|88811298|ref|ZP_01126554.1| ATP synthase F0, C subunit [Nitrococcus mobilis Nb-231]
 gi|88791837|gb|EAR22948.1| ATP synthase F0, C subunit [Nitrococcus mobilis Nb-231]
Length=99

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 30/69 (44%), Positives = 42/69 (61%), Gaps = 0/69 (0%)

Query  11  IGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAF  70
           +G G+I+    +G+ +G G+  +  + G+ARQPE Q RL    FIT GL+E+  FI LAF
Sbjct  17  LGVGIILGLAGLGSALGWGLICSKYMEGIARQPEMQPRLLIQMFITAGLMESFPFIVLAF  76

Query  71  MALFVFATP  79
              F FA P
Sbjct  77  AMYFTFANP  85


>gi|78486507|ref|YP_392432.1| ATP synthase F0, C subunit [Thiomicrospira crunogena XCL-2]
 gi|123769021|sp|Q31DL5.1|ATPL_THICR RecName: Full=ATP synthase subunit c; AltName: Full=ATP synthase 
F(0) sector subunit c; AltName: Full=F-type ATPase subunit 
c; Short=F-ATPase subunit c; AltName: Full=Lipid-binding 
protein
 gi|78364793|gb|ABB42758.1| ATP synthase F0, C subunit [Thiomicrospira crunogena XCL-2]
Length=94

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 0/75 (0%)

Query  5   IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAY  64
           I A   IG G+I+A   +G+ IG G+  +  + G+ARQPE +  L T  FI  GL+E+  
Sbjct  9   IYAATAIGVGVILAAAGLGSAIGWGLICSKTLEGIARQPEMRPALMTNMFIFAGLMESFP  68

Query  65  FINLAFMALFVFATP  79
           FI LAF   F+FA P
Sbjct  69  FIILAFAMWFLFANP  83


>gi|114777378|ref|ZP_01452375.1| ATP synthase F0, C subunit [Mariprofundus ferrooxydans PV-1]
 gi|114552160|gb|EAU54662.1| ATP synthase F0, C subunit [Mariprofundus ferrooxydans PV-1]
Length=84

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 33/81 (41%), Positives = 48/81 (60%), Gaps = 2/81 (2%)

Query  1   MDPT--IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVG  58
           MDP   I A + I  G+I+A   +G+ IG G+  +  + G+ARQPE + +L    FI  G
Sbjct  1   MDPHTIIIAASAISVGVILAAAGLGSAIGWGLICSKTLEGIARQPEMRPQLMFNMFIFAG  60

Query  59  LVEAAYFINLAFMALFVFATP  79
           L+E+  FI +AF   F+FA P
Sbjct  61  LMESFPFIIMAFALWFLFANP  81


>gi|118411027|ref|YP_874422.1| ATP synthase CF0 C chain subunit III [Phaeodactylum tricornutum]
 gi|223634991|sp|A0T0E7.1|ATPH_PHATC RecName: Full=ATP synthase subunit c, chloroplastic; AltName: 
Full=ATP synthase F(0) sector subunit c; AltName: Full=ATPase 
subunit III; AltName: Full=F-type ATPase subunit c; Short=F-ATPase 
subunit c; AltName: Full=Lipid-binding protein
 gi|116739774|gb|ABK20645.1| ATP synthase CF0 C chain subunit III [Phaeodactylum tricornutum]
Length=82

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 30/79 (38%), Positives = 44/79 (56%), Gaps = 0/79 (0%)

Query  1   MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLV  60
           MDP I+A ++IG GL +   AIG GIG G A    + G+ARQPEA+ ++     +++  +
Sbjct  1   MDPIISAASVIGAGLSIGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGVLLLSLAFM  60

Query  61  EAAYFINLAFMALFVFATP  79
           EA     L      +FA P
Sbjct  61  EALTIYGLVVALALLFANP  79


>gi|298370412|ref|ZP_06981728.1| ATP synthase F0, C subunit [Neisseria sp. oral taxon 014 str. 
F0314]
 gi|298281872|gb|EFI23361.1| ATP synthase F0, C subunit [Neisseria sp. oral taxon 014 str. 
F0314]
Length=78

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 32/69 (47%), Positives = 42/69 (61%), Gaps = 0/69 (0%)

Query  11  IGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAF  70
           I  GLI+A GA+GA IG G+ G+  +   ARQPE  G L T  F+  GL++AA+ I +A 
Sbjct  7   IACGLIVAFGAMGAAIGIGMVGSKYLESSARQPELIGPLQTKLFLIAGLIDAAFLIGVAI  66

Query  71  MALFVFATP  79
             LF F  P
Sbjct  67  ALLFAFVNP  75


>gi|294668633|ref|ZP_06733729.1| ATP synthase F0, C subunit [Neisseria elongata subsp. glycolytica 
ATCC 29315]
 gi|291309395|gb|EFE50638.1| ATP synthase F0, C subunit [Neisseria elongata subsp. glycolytica 
ATCC 29315]
Length=77

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 31/69 (45%), Positives = 41/69 (60%), Gaps = 0/69 (0%)

Query  11  IGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAF  70
           I  GLI+A GA+GA IG  + G+  +   ARQPE  G L T  F+  GL++AA+ I +A 
Sbjct  6   IACGLIVALGALGASIGIAMVGSKYLESSARQPELIGPLQTKLFLIAGLIDAAFLIGVAI  65

Query  71  MALFVFATP  79
             LF F  P
Sbjct  66  ALLFAFVNP  74


>gi|294789018|ref|ZP_06754258.1| ATP synthase F0, C subunit [Simonsiella muelleri ATCC 29453]
 gi|329118575|ref|ZP_08247279.1| ATP synthase F0 sector subunit C [Neisseria bacilliformis ATCC 
BAA-1200]
 gi|294483120|gb|EFG30807.1| ATP synthase F0, C subunit [Simonsiella muelleri ATCC 29453]
 gi|327465310|gb|EGF11591.1| ATP synthase F0 sector subunit C [Neisseria bacilliformis ATCC 
BAA-1200]
Length=77

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 31/71 (44%), Positives = 42/71 (60%), Gaps = 0/71 (0%)

Query  11  IGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAF  70
           I  GLI+A GA+GA IG  + G+  +   ARQPE  G L T  F+  GL++AA+ I +A 
Sbjct  6   IACGLIVALGALGASIGIAMVGSKYLESSARQPELIGPLQTKLFLIAGLIDAAFLIGVAI  65

Query  71  MALFVFATPVK  81
             LF F  P +
Sbjct  66  ALLFAFVNPFQ  76



Lambda     K      H
   0.327    0.145    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128409240708


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40