BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1306

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608446|ref|NP_215822.1|  F0F1 ATP synthase subunit B [Mycoba...   338    2e-91
gi|341601253|emb|CCC63926.1|  probable ATP synthase B chain atpF ...   336    6e-91
gi|289749863|ref|ZP_06509241.1|  ATP synthase subunit B atpF [Myc...   335    1e-90
gi|323720263|gb|EGB29362.1|  ATP synthase subunit B atpF [Mycobac...   330    6e-89
gi|183984062|ref|YP_001852353.1|  ATP synthase B chain AtpF [Myco...   276    8e-73
gi|118619162|ref|YP_907494.1|  F0F1 ATP synthase subunit B [Mycob...   271    3e-71
gi|240169508|ref|ZP_04748167.1|  F0F1 ATP synthase subunit B [Myc...   267    4e-70
gi|342858033|ref|ZP_08714689.1|  F0F1 ATP synthase subunit B [Myc...   258    1e-67
gi|296170247|ref|ZP_06851840.1|  ATP synthase F0 sector subunit B...   254    2e-66
gi|41408553|ref|NP_961389.1|  F0F1 ATP synthase subunit B [Mycoba...   241    3e-62
gi|118466607|ref|YP_880762.1|  F0F1 ATP synthase subunit B [Mycob...   241    3e-62
gi|254821305|ref|ZP_05226306.1|  F0F1 ATP synthase subunit B [Myc...   238    2e-61
gi|15827572|ref|NP_301835.1|  F0F1 ATP synthase subunit B [Mycoba...   235    2e-60
gi|333989945|ref|YP_004522559.1|  ATP synthase B chain AtpF [Myco...   212    1e-53
gi|118471133|ref|YP_889192.1|  F0F1 ATP synthase subunit B [Mycob...   202    1e-50
gi|120405286|ref|YP_955115.1|  F0F1 ATP synthase subunit B [Mycob...   187    3e-46
gi|145222902|ref|YP_001133580.1|  F0F1 ATP synthase subunit B [My...   186    2e-45
gi|108800844|ref|YP_641041.1|  F0F1 ATP synthase subunit B [Mycob...   182    1e-44
gi|169628540|ref|YP_001702189.1|  F0F1 ATP synthase subunit B [My...   156    1e-36
gi|262201856|ref|YP_003273064.1|  H+transporting two-sector ATPas...   128    3e-28
gi|317506174|ref|ZP_07963995.1|  ATP synthase B/B' CF(0) [Segnili...   116    9e-25
gi|331695529|ref|YP_004331768.1|  ATP synthase subunit b [Pseudon...   110    8e-23
gi|296393124|ref|YP_003658008.1|  ATP synthase F0 subunit B [Segn...   107    8e-22
gi|296138978|ref|YP_003646221.1|  H+transporting two-sector ATPas...   101    4e-20
gi|343928067|ref|ZP_08767532.1|  ATP synthase subunit b [Gordonia...  90.9    5e-17
gi|116671155|ref|YP_832088.1|  ATP synthase F0 subunit B [Arthrob...  89.4    2e-16
gi|68536424|ref|YP_251129.1|  F0F1 ATP synthase subunit B [Coryne...  87.0    1e-15
gi|257069068|ref|YP_003155323.1|  ATP synthase F0 subcomplex B su...  85.9    2e-15
gi|220913087|ref|YP_002488396.1|  ATP synthase F0 subunit beta [A...  85.5    3e-15
gi|340794790|ref|YP_004760253.1|  ATP synthase subunit B [Coryneb...  82.4    2e-14
gi|269957236|ref|YP_003327025.1|  ATP synthase F0 subunit B [Xyla...  82.0    3e-14
gi|325963830|ref|YP_004241736.1|  ATP synthase F0 subcomplex subu...  80.9    6e-14
gi|183602784|ref|ZP_02964147.1|  F0F1 ATP synthase subunit B [Bif...  79.0    3e-13
gi|119026449|ref|YP_910294.1|  F0F1 ATP synthase subunit B [Bifid...  78.6    3e-13
gi|154488036|ref|ZP_02029153.1|  hypothetical protein BIFADO_0160...  78.6    3e-13
gi|336325971|ref|YP_004605937.1|  F0F1 ATP synthase subunit B [Co...  78.2    4e-13
gi|119963814|ref|YP_948318.1|  ATP synthase F0, B subunit [Arthro...  77.8    5e-13
gi|284992520|ref|YP_003411074.1|  ATP synthase F0 subunit B [Geod...  77.4    8e-13
gi|225352597|ref|ZP_03743620.1|  hypothetical protein BIFPSEUDO_0...  76.3    2e-12
gi|171742079|ref|ZP_02917886.1|  hypothetical protein BIFDEN_0118...  75.9    2e-12
gi|334563641|ref|ZP_08516632.1|  F0F1 ATP synthase subunit B [Cor...  75.9    2e-12
gi|229819798|ref|YP_002881324.1|  ATP synthase F0 subunit B [Beut...  75.9    2e-12
gi|184200626|ref|YP_001854833.1|  ATP synthase subunit b [Kocuria...  75.5    3e-12
gi|310288112|ref|YP_003939371.1|  ATP synthase subunit B [Bifidob...  75.1    3e-12
gi|311064985|ref|YP_003971711.1|  ATP synthase subunit B [Bifidob...  75.1    3e-12
gi|212715315|ref|ZP_03323443.1|  hypothetical protein BIFCAT_0020...  74.7    4e-12
gi|227501701|ref|ZP_03931750.1|  F0F1 ATP synthase subunit B [Cor...  73.9    8e-12
gi|296128922|ref|YP_003636172.1|  ATP synthase F0, B subunit [Cel...  73.9    8e-12
gi|296268881|ref|YP_003651513.1|  ATP synthase F0 subunit B [Ther...  73.6    9e-12
gi|109900597|ref|YP_663852.1|  F0F1 ATP synthase subunit B [Pseud...  73.2    1e-11


>gi|15608446|ref|NP_215822.1| F0F1 ATP synthase subunit B [Mycobacterium tuberculosis H37Rv]
 gi|15840757|ref|NP_335794.1| F0F1 ATP synthase subunit B [Mycobacterium tuberculosis CDC1551]
 gi|31792499|ref|NP_854992.1| F0F1 ATP synthase subunit B [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=171

 Score =  338 bits (866),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 171/171 (100%), Positives = 171/171 (100%), Gaps = 0/171 (0%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER
Sbjct  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ
Sbjct  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171
            QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR
Sbjct  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171


>gi|341601253|emb|CCC63926.1| probable ATP synthase B chain atpF [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=171

 Score =  336 bits (862),  Expect = 6e-91, Method: Compositional matrix adjust.
 Identities = 170/171 (99%), Positives = 170/171 (99%), Gaps = 0/171 (0%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER
Sbjct  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ
Sbjct  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171
            QV STLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR
Sbjct  121  QVTSTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171


>gi|289749863|ref|ZP_06509241.1| ATP synthase subunit B atpF [Mycobacterium tuberculosis T92]
 gi|289690450|gb|EFD57879.1| ATP synthase subunit B atpF [Mycobacterium tuberculosis T92]
Length=171

 Score =  335 bits (860),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 170/171 (99%), Positives = 170/171 (99%), Gaps = 0/171 (0%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MGEVSAIVLAASQAAEEGGESSNFLIPNGTF VVLAIFLVVLAVIGTFVVPPILKVLRER
Sbjct  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFLVVLAIFLVVLAVIGTFVVPPILKVLRER  60

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ
Sbjct  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171
            QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR
Sbjct  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171


>gi|323720263|gb|EGB29362.1| ATP synthase subunit B atpF [Mycobacterium tuberculosis CDC1551A]
 gi|339294286|gb|AEJ46397.1| F0F1 ATP synthase subunit B [Mycobacterium tuberculosis CCDC5079]
 gi|339297926|gb|AEJ50036.1| F0F1 ATP synthase subunit B [Mycobacterium tuberculosis CCDC5180]
Length=168

 Score =  330 bits (845),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 167/168 (99%), Positives = 168/168 (100%), Gaps = 0/168 (0%)

Query  4    VSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAM  63
            +SAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAM
Sbjct  1    MSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAM  60

Query  64   VAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVA  123
            VAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVA
Sbjct  61   VAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVA  120

Query  124  STLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171
            STLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR
Sbjct  121  STLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  168


>gi|183984062|ref|YP_001852353.1| ATP synthase B chain AtpF [Mycobacterium marinum M]
 gi|226741507|sp|B2HQK6.1|ATPF_MYCMM RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|183177388|gb|ACC42498.1| ATP synthase B chain AtpF [Mycobacterium marinum M]
Length=170

 Score =  276 bits (706),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 140/169 (83%), Positives = 156/169 (93%), Gaps = 1/169 (0%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            M +V++IVLAA QAAEEGG ++NFL+PNGTFF VLAIFLVVLAVIGTFVVPPILKVLRER
Sbjct  1    MDDVNSIVLAAGQAAEEGG-TNNFLVPNGTFFFVLAIFLVVLAVIGTFVVPPILKVLRER  59

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKTLADNKKS EQFAAAQADY++AM EARVQASS RDNARA+GRKV+EDAR  AEQ
Sbjct  60   DAMVAKTLADNKKSAEQFAAAQADYEKAMAEARVQASSYRDNARAEGRKVVEDARAHAEQ  119

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAA  169
            +VASTLQ A+EQLKRERDAVELDLRA+VG MSATLA+RI+GVD+T  AA
Sbjct  120  EVASTLQQANEQLKRERDAVELDLRANVGAMSATLANRIVGVDVTTPAA  168


>gi|118619162|ref|YP_907494.1| F0F1 ATP synthase subunit B [Mycobacterium ulcerans Agy99]
 gi|226694323|sp|A0PUK4.1|ATPF_MYCUA RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|118571272|gb|ABL06023.1| ATP synthase B chain AtpF [Mycobacterium ulcerans Agy99]
Length=170

 Score =  271 bits (692),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 138/169 (82%), Positives = 154/169 (92%), Gaps = 1/169 (0%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            M +V++IVLAA QAAEEGG ++NFL+PNGTFF VLAIFLVVLAVIGTFVVPPILKVLRER
Sbjct  1    MDDVNSIVLAAGQAAEEGG-TNNFLVPNGTFFFVLAIFLVVLAVIGTFVVPPILKVLRER  59

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVA TLADNKKS EQFAAAQADY++AM EARVQASS R NARA+GRKV+EDAR  AEQ
Sbjct  60   DAMVAMTLADNKKSAEQFAAAQADYEKAMAEARVQASSYRHNARAEGRKVVEDARAHAEQ  119

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAA  169
            +VASTLQ A+EQLKRERDAVELDLRA+VG MSATLA+RI+GVD+T  AA
Sbjct  120  EVASTLQQANEQLKRERDAVELDLRANVGAMSATLANRIVGVDVTTPAA  168


>gi|240169508|ref|ZP_04748167.1| F0F1 ATP synthase subunit B [Mycobacterium kansasii ATCC 12478]
Length=174

 Score =  267 bits (682),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 143/174 (83%), Positives = 161/174 (93%), Gaps = 3/174 (1%)

Query  1    MGEVSAIVLAASQAA---EEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVL  57
            MG++++IVLAA QAA   EEGG++ NFL+PNGTFF VLAIFLVVL VIGTFVVPPILKVL
Sbjct  1    MGDLNSIVLAAGQAASGAEEGGKNQNFLVPNGTFFFVLAIFLVVLGVIGTFVVPPILKVL  60

Query  58   RERDAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVR  117
            RERDAMVAKTLAD+KK+ EQFAAAQADY+EAM +ARVQASS RDNARA+GRK +EDAR R
Sbjct  61   RERDAMVAKTLADSKKAAEQFAAAQADYEEAMRKARVQASSYRDNARAEGRKAVEDARAR  120

Query  118  AEQQVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171
            AEQ+VASTLQTA+EQLKRERDAVELDLRA+VGTMSATLASR+LGVD+T SAATR
Sbjct  121  AEQEVASTLQTANEQLKRERDAVELDLRANVGTMSATLASRVLGVDVTTSAATR  174


>gi|342858033|ref|ZP_08714689.1| F0F1 ATP synthase subunit B [Mycobacterium colombiense CECT 3035]
 gi|342135366|gb|EGT88532.1| F0F1 ATP synthase subunit B [Mycobacterium colombiense CECT 3035]
Length=176

 Score =  258 bits (660),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 130/164 (80%), Positives = 147/164 (90%), Gaps = 3/164 (1%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MG+ S  VLA+SQA  EG   +NFL+PNGTFF VLAIFL+VLAVIGTFVVPP+++VLRER
Sbjct  1    MGDASLSVLASSQAVAEG---NNFLVPNGTFFFVLAIFLIVLAVIGTFVVPPVMRVLRER  57

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKT ADNKK+ EQF AA+ADY+EA+TEARVQASSLRDNARA+GRKV+EDAR RAEQ
Sbjct  58   DAMVAKTAADNKKAAEQFDAAKADYEEALTEARVQASSLRDNARAEGRKVVEDARARAEQ  117

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDL  164
            QV STLQ A EQLKRERDAVELDLRA+V +MSATLASRILGVD+
Sbjct  118  QVMSTLQMASEQLKRERDAVELDLRANVASMSATLASRILGVDV  161


>gi|296170247|ref|ZP_06851840.1| ATP synthase F0 sector subunit B [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895123|gb|EFG74841.1| ATP synthase F0 sector subunit B [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=178

 Score =  254 bits (650),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 128/164 (79%), Positives = 145/164 (89%), Gaps = 2/164 (1%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MG+ S  VLA+ Q   EGG  +NFL+PNGTFF VLAIFL+VLAVIGTFVVPP+++VLRER
Sbjct  2    MGDASLNVLASGQVVAEGG--NNFLVPNGTFFFVLAIFLIVLAVIGTFVVPPVMRVLRER  59

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKT ADNKK+ EQF AA+ADY+EA+TEARVQASSLRDNARA+GRKV+EDAR RAEQ
Sbjct  60   DAMVAKTAADNKKAAEQFDAAKADYEEALTEARVQASSLRDNARAEGRKVVEDARARAEQ  119

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDL  164
            QV STLQ A EQLKRERDAVELDLRA+V  MSATLASRILGV++
Sbjct  120  QVMSTLQMASEQLKRERDAVELDLRANVAAMSATLASRILGVEV  163


>gi|41408553|ref|NP_961389.1| F0F1 ATP synthase subunit B [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254774345|ref|ZP_05215861.1| F0F1 ATP synthase subunit B [Mycobacterium avium subsp. avium 
ATCC 25291]
 gi|81700505|sp|Q73X55.1|ATPF_MYCPA RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|41396911|gb|AAS04772.1| AtpF [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336460903|gb|EGO39786.1| F0F1-type ATP synthase, beta subunit [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=177

 Score =  241 bits (615),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 129/164 (79%), Positives = 146/164 (90%), Gaps = 2/164 (1%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MG+ S  VLA+SQ   EGG  +NFL+PNGTFF VLAIFL+VLAVIGTFVVPP++KVLRER
Sbjct  1    MGDASLSVLASSQVVAEGG--NNFLVPNGTFFFVLAIFLIVLAVIGTFVVPPVMKVLRER  58

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKT ADN+K+ EQF AAQADY+EAMTEARVQASSLRDNARA+GRKV+EDAR +AEQ
Sbjct  59   DAMVAKTAADNRKAAEQFEAAQADYEEAMTEARVQASSLRDNARAEGRKVVEDARAKAEQ  118

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDL  164
            +V STLQ A  QLKRERDAVELDLRA+V +MSATLASRILGVD+
Sbjct  119  EVLSTLQLAARQLKRERDAVELDLRANVASMSATLASRILGVDV  162


>gi|118466607|ref|YP_880762.1| F0F1 ATP synthase subunit B [Mycobacterium avium 104]
 gi|226741502|sp|A0QCX4.1|ATPF_MYCA1 RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|118167894|gb|ABK68791.1| ATP synthase B chain [Mycobacterium avium 104]
Length=178

 Score =  241 bits (615),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 129/164 (79%), Positives = 146/164 (90%), Gaps = 2/164 (1%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MG+ S  VLA+SQ   EGG  +NFL+PNGTFF VLAIFL+VLAVIGTFVVPP++KVLRER
Sbjct  2    MGDASLSVLASSQVVAEGG--NNFLVPNGTFFFVLAIFLIVLAVIGTFVVPPVMKVLRER  59

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKT ADN+K+ EQF AAQADY+EAMTEARVQASSLRDNARA+GRKV+EDAR +AEQ
Sbjct  60   DAMVAKTAADNRKAAEQFEAAQADYEEAMTEARVQASSLRDNARAEGRKVVEDARAKAEQ  119

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDL  164
            +V STLQ A  QLKRERDAVELDLRA+V +MSATLASRILGVD+
Sbjct  120  EVLSTLQLAARQLKRERDAVELDLRANVASMSATLASRILGVDV  163


>gi|254821305|ref|ZP_05226306.1| F0F1 ATP synthase subunit B [Mycobacterium intracellulare ATCC 
13950]
Length=177

 Score =  238 bits (607),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 127/164 (78%), Positives = 146/164 (90%), Gaps = 2/164 (1%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MG+ S  VLA+ Q   EGG  +NFL+PNGTFF VLAIFL+VLAVIGTFVVPP++KVLRER
Sbjct  1    MGDASLSVLASGQVVAEGG--NNFLVPNGTFFFVLAIFLIVLAVIGTFVVPPVMKVLRER  58

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKT AD KK+ EQF AAQADY+EAMTEARVQASSLRDNARA+GRKV+E+AR RAEQ
Sbjct  59   DAMVAKTAADTKKAAEQFEAAQADYEEAMTEARVQASSLRDNARAEGRKVVEEARARAEQ  118

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDL  164
            +V+STLQ A +QLKRERDAVELDLRA+V +M+ATLASRILGVD+
Sbjct  119  EVSSTLQLAAQQLKRERDAVELDLRANVASMAATLASRILGVDV  162


>gi|15827572|ref|NP_301835.1| F0F1 ATP synthase subunit B [Mycobacterium leprae TN]
 gi|221230049|ref|YP_002503465.1| F0F1 ATP synthase subunit B [Mycobacterium leprae Br4923]
 gi|1168594|sp|P45827.1|ATPF_MYCLE RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|699343|gb|AAA63104.1| atpF [Mycobacterium leprae]
 gi|13093122|emb|CAC31522.1| probable ATP synthase B chain [Mycobacterium leprae]
 gi|219933156|emb|CAR71236.1| probable ATP synthase B chain [Mycobacterium leprae Br4923]
Length=170

 Score =  235 bits (599),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 136/171 (80%), Positives = 145/171 (85%), Gaps = 1/171 (0%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            M EVSAIV A SQAAEEG +SSNFL+PNGTFF VLAIFLVVL VIGTFVVPPILKVL+ER
Sbjct  1    MFEVSAIVFAVSQAAEEG-KSSNFLLPNGTFFFVLAIFLVVLGVIGTFVVPPILKVLQER  59

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            DAMVAKT AD+K S  QFAAAQADY+ AM EARVQ+S LRDNAR DGRK IE+ARVRAEQ
Sbjct  60   DAMVAKTDADSKMSAAQFAAAQADYEAAMKEARVQSSFLRDNARVDGRKSIEEARVRAEQ  119

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171
             V STLQ A EQ+KRERDAVELDLRA  G MS  LASRILGVD+TAS  TR
Sbjct  120  HVVSTLQIAGEQIKRERDAVELDLRAKAGAMSLILASRILGVDITASVVTR  170


>gi|333989945|ref|YP_004522559.1| ATP synthase B chain AtpF [Mycobacterium sp. JDM601]
 gi|333485913|gb|AEF35305.1| ATP synthase B chain AtpF [Mycobacterium sp. JDM601]
Length=177

 Score =  212 bits (540),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 108/166 (66%), Positives = 135/166 (82%), Gaps = 3/166 (1%)

Query  1    MGEVSAIVLAASQ---AAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVL  57
            MG++S +VLAA++   A  E GES+NFL+PNGTFFVVL IFLVVL VIGTFVVPPI++VL
Sbjct  1    MGDMSVVVLAATRQVAAGAEEGESANFLLPNGTFFVVLGIFLVVLGVIGTFVVPPIMRVL  60

Query  58   RERDAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVR  117
            RERD MV KTLADN++S EQFAAA ADY++ M  AR++A+++RD ARA+GRK I++ R  
Sbjct  61   RERDNMVTKTLADNRESAEQFAAADADYEKQMAAARLEATTVRDEARAEGRKAIDEQRSA  120

Query  118  AEQQVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVD  163
            AE +VA+TLQ A EQLK+E DAV   L+A V T+SATLA RILGV+
Sbjct  121  AEAEVATTLQAATEQLKQEGDAVSEQLQARVATLSATLAGRILGVE  166


>gi|118471133|ref|YP_889192.1| F0F1 ATP synthase subunit B [Mycobacterium smegmatis str. MC2 
155]
 gi|226737871|sp|A0R204.1|ATPF_MYCS2 RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|118172420|gb|ABK73316.1| bacteriophage lysis protein [Mycobacterium smegmatis str. MC2 
155]
Length=170

 Score =  202 bits (515),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 105/166 (64%), Positives = 125/166 (76%), Gaps = 0/166 (0%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MGE SA +LAASQAAEEGG  SNFLIPNGTFF VL IFL+VL VI  +VVPPI KVL ER
Sbjct  1    MGEFSATILAASQAAEEGGGGSNFLIPNGTFFAVLIIFLIVLGVISKWVVPPISKVLAER  60

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            +AM+AKT ADN+KS EQ AAAQADY++ M EAR QAS+LRD ARA GR V+++ R +A  
Sbjct  61   EAMLAKTAADNRKSAEQVAAAQADYEKEMAEARAQASALRDEARAAGRSVVDEKRAQASG  120

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTA  166
            +VA TL  A +QL  + D V   L + V  +SA LASRILGVD+ +
Sbjct  121  EVAQTLTQADQQLSAQGDQVRSGLESSVDGLSAKLASRILGVDVNS  166


>gi|120405286|ref|YP_955115.1| F0F1 ATP synthase subunit B [Mycobacterium vanbaalenii PYR-1]
 gi|226694324|sp|A1TD59.1|ATPF_MYCVP RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|119958104|gb|ABM15109.1| H+-transporting two-sector ATPase, B/B' subunit [Mycobacterium 
vanbaalenii PYR-1]
Length=166

 Score =  187 bits (476),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 95/169 (57%), Positives = 129/169 (77%), Gaps = 4/169 (2%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MGE++  ++AA    EEGG +SNFLIPNGTFFVVL IFL+VL VI  +VVPP+ KVL ER
Sbjct  1    MGELTTSIVAA----EEGGGTSNFLIPNGTFFVVLLIFLIVLGVIAKWVVPPVSKVLAER  56

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            +AM+AKT ADN+KS EQ AAAQADYD+ M +AR +ASS+RD AR  GR+V+++ R  A  
Sbjct  57   EAMLAKTAADNRKSAEQVAAAQADYDKTMADARGEASSIRDEARVAGRQVVDEKRAVASG  116

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAA  169
            +VA T+++A +QL ++  A + +L++ V  +SATLASRILGVD+ +  +
Sbjct  117  EVAETVKSADQQLSQQGSAAQSELQSSVDGLSATLASRILGVDVNSGGS  165


>gi|145222902|ref|YP_001133580.1| F0F1 ATP synthase subunit B [Mycobacterium gilvum PYR-GCK]
 gi|315443367|ref|YP_004076246.1| F0F1-type ATP synthase subunit beta [Mycobacterium sp. Spyr1]
 gi|226741521|sp|A4T8K9.1|ATPF_MYCGI RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|145215388|gb|ABP44792.1| H+-transporting two-sector ATPase, B/B' subunit [Mycobacterium 
gilvum PYR-GCK]
 gi|315261670|gb|ADT98411.1| F0F1-type ATP synthase, beta subunit [Mycobacterium sp. Spyr1]
Length=171

 Score =  186 bits (471),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 95/165 (58%), Positives = 129/165 (79%), Gaps = 1/165 (0%)

Query  1    MGEVSAIVLAAS-QAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRE  59
            MG++++  LA++  AAEEGG +SNFL+PNGTFF VL IFL+VL VI  +VVPPI KVL E
Sbjct  1    MGDLTSTNLASAILAAEEGGGTSNFLLPNGTFFAVLLIFLIVLGVIAKWVVPPISKVLAE  60

Query  60   RDAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAE  119
            R+AM+AKT ADN+KS EQ AAA+ADYD+ + EAR +ASS+RD AR  GR+V+++ R  A 
Sbjct  61   REAMLAKTAADNRKSAEQVAAARADYDKTLAEARGEASSIRDEARVAGRQVVDEKRATAN  120

Query  120  QQVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDL  164
             +VA T++TA E+L ++  A + +L++ V  +SATLASRILGVD+
Sbjct  121  GEVAETVKTADEKLTQQGSAAQSELQSSVDALSATLASRILGVDV  165


>gi|108800844|ref|YP_641041.1| F0F1 ATP synthase subunit B [Mycobacterium sp. MCS]
 gi|119869984|ref|YP_939936.1| F0F1 ATP synthase subunit B [Mycobacterium sp. KMS]
 gi|126436442|ref|YP_001072133.1| F0F1 ATP synthase subunit B [Mycobacterium sp. JLS]
 6 more sequence titles
 Length=169

 Score =  182 bits (463),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 92/170 (55%), Positives = 126/170 (75%), Gaps = 5/170 (2%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            MG++S  +LAA    EEGG   NFL+PNGTFF VL IFL+VL VI  +VVPPI KVL+ER
Sbjct  1    MGDLSTTILAA----EEGG-GGNFLVPNGTFFFVLLIFLIVLGVIAKWVVPPISKVLQER  55

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            +AMV KT+ DN+K+ + FAAAQ D  + M +AR +AS +RD AR +GRK++ED R RA  
Sbjct  56   EAMVTKTVEDNRKAADLFAAAQGDSQQVMAKARREASGIRDEARGEGRKILEDMRSRASA  115

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAAT  170
            + A+TLQ  +E+L R+      +L++ + T+SATLASR+LGVD++++AAT
Sbjct  116  ESAATLQKTNEELSRQGQQTAAELQSSIETLSATLASRVLGVDISSAAAT  165


>gi|169628540|ref|YP_001702189.1| F0F1 ATP synthase subunit B [Mycobacterium abscessus ATCC 19977]
 gi|226741504|sp|B1MLV8.1|ATPF_MYCA9 RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|169240507|emb|CAM61535.1| ATP synthase B chain AtpF [Mycobacterium abscessus]
Length=177

 Score =  156 bits (395),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 81/151 (54%), Positives = 110/151 (73%), Gaps = 0/151 (0%)

Query  18   GGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQ  77
            GG+ +NFLIPNGTFFVVLAIFL+VLAVIGTFVVPPI KVL+ R+ MV KT  DN+ + EQ
Sbjct  22   GGKQNNFLIPNGTFFVVLAIFLIVLAVIGTFVVPPIQKVLKAREDMVTKTAEDNRNAAEQ  81

Query  78   FAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRER  137
            F AA+ADY + + +AR  A+++RD ARA+GR ++ED R RA  +  +  +TA  +L R+ 
Sbjct  82   FTAAEADYKDELAKARGAATAVRDEARAEGRGILEDMRQRANAEATAVTETAAAELARQG  141

Query  138  DAVELDLRAHVGTMSATLASRILGVDLTASA  168
            +    +L  +V ++S TLA R+LGV L+  A
Sbjct  142  EVTAGELATNVDSLSRTLAERVLGVSLSEPA  172


>gi|262201856|ref|YP_003273064.1| H+transporting two-sector ATPase B/B' subunit [Gordonia bronchialis 
DSM 43247]
 gi|262085203|gb|ACY21171.1| H+transporting two-sector ATPase B/B' subunit [Gordonia bronchialis 
DSM 43247]
Length=166

 Score =  128 bits (322),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 77/153 (51%), Positives = 98/153 (65%), Gaps = 0/153 (0%)

Query  14   AAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKK  73
            AAEEG +  NFLIPNGTFFV L IF++VL VI T VVPPI+KVL ERDAMVAKT+ DNK 
Sbjct  8    AAEEGEKPPNFLIPNGTFFVCLLIFVIVLVVIRTMVVPPIVKVLDERDAMVAKTIEDNKS  67

Query  74   SDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQL  133
            +   +  A   Y  A+ EAR  A+ +RD ARA+  + +  A+ RA Q+  + L    E L
Sbjct  68   AAAIYEDADTQYRAALKEARGDATRIRDEARAEANEELAAAKRRATQEADAALAATSESL  127

Query  134  KRERDAVELDLRAHVGTMSATLASRILGVDLTA  166
              E +      RA V  +SATLA R+LG D++A
Sbjct  128  AAEGERAASTARADVERLSATLAGRVLGTDISA  160


>gi|317506174|ref|ZP_07963995.1| ATP synthase B/B' CF(0) [Segniliparus rugosus ATCC BAA-974]
 gi|316255519|gb|EFV14768.1| ATP synthase B/B' CF(0) [Segniliparus rugosus ATCC BAA-974]
Length=174

 Score =  116 bits (291),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 68/160 (43%), Positives = 103/160 (65%), Gaps = 6/160 (3%)

Query  1    MGEVSAIVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRER  60
            M +++A VLA      EG + SNFLIP+GTF V L IFL+VLA+I  FVVPPI  VL++R
Sbjct  1    MTQMTASVLA------EGEKKSNFLIPDGTFLVELVIFLIVLAIIWKFVVPPIQSVLQDR  54

Query  61   DAMVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQ  120
            +A VAKT  DN+K+ +    A+  Y E +  AR +A+++R+ ARA+G+KV+  AR  A+ 
Sbjct  55   EARVAKTNEDNQKAAQALQNAERKYSEELAGARTEATAIREQARAEGQKVLAAARAEAQA  114

Query  121  QVASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRIL  160
            +       A  +L+ + D +  +L++ VG +S  LA ++L
Sbjct  115  EADQAQAQAEGELRAQADRIGSELKSSVGPLSEELAGKVL  154


>gi|331695529|ref|YP_004331768.1| ATP synthase subunit b [Pseudonocardia dioxanivorans CB1190]
 gi|326950218|gb|AEA23915.1| ATP synthase subunit b [Pseudonocardia dioxanivorans CB1190]
Length=184

 Score =  110 bits (275),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 58/147 (40%), Positives = 90/147 (62%), Gaps = 0/147 (0%)

Query  15   AEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKS  74
            A+ GGE++NFL+PN T  V + IFL+VL     FVVPP+ K +RERD MV K + +  ++
Sbjct  7    AQGGGETTNFLLPNFTIVVEIVIFLLVLFFFYRFVVPPLTKAMRERDEMVRKQVEERDRA  66

Query  75   DEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLK  134
                  A+  Y  ++ EAR +A+++RD ARAD +++ E  R   +++VA   +    +L 
Sbjct  67   VRTLREAEERYAASLAEARGEATAIRDEARADAQQIRETMRAETDREVARLREQGEAELA  126

Query  135  RERDAVELDLRAHVGTMSATLASRILG  161
             +R      LRA +G +S+ LASR+LG
Sbjct  127  AQRAETARSLRAEIGGLSSDLASRVLG  153


>gi|296393124|ref|YP_003658008.1| ATP synthase F0 subunit B [Segniliparus rotundus DSM 44985]
 gi|296180271|gb|ADG97177.1| ATP synthase F0, B subunit [Segniliparus rotundus DSM 44985]
Length=173

 Score =  107 bits (266),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 62/154 (41%), Positives = 95/154 (62%), Gaps = 0/154 (0%)

Query  7    IVLAASQAAEEGGESSNFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAK  66
            ++L  +    EG +  NFLIPNGTF V L IF++VLAVI  FVVPPI  VL++R+A  AK
Sbjct  1    MILTTASVLAEGEKKDNFLIPNGTFLVELVIFILVLAVIWKFVVPPIQTVLQDREAQAAK  60

Query  67   TLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTL  126
            T  DN K+ +    A+  Y + +  AR +A+++RD ARA+G+KV+ +AR  A+ +     
Sbjct  61   TNEDNHKAAQALQDAKRKYSDELAGARGEATAIRDQARAEGQKVLAEARAAAQAEADQAQ  120

Query  127  QTAHEQLKRERDAVELDLRAHVGTMSATLASRIL  160
              A  +L+ + D    +L++ V  +S  LA ++L
Sbjct  121  AQADSELRAQADRASAELKSSVRPLSEELADKVL  154


>gi|296138978|ref|YP_003646221.1| H+transporting two-sector ATPase B/B' subunit [Tsukamurella paurometabola 
DSM 20162]
 gi|296027112|gb|ADG77882.1| H+transporting two-sector ATPase B/B' subunit [Tsukamurella paurometabola 
DSM 20162]
Length=170

 Score =  101 bits (252),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 59/150 (40%), Positives = 89/150 (60%), Gaps = 1/150 (0%)

Query  23   NFLIPN-GTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAA  81
            NFL+P  GTF   L IFL+VL VI  FV P I +VL +R+ M+ +T  D + + + F  A
Sbjct  7    NFLLPTAGTFITCLIIFLIVLGVIWFFVAPSIQQVLDDREKMINQTANDGRAAAKGFEDA  66

Query  82   QADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVE  141
            +A+Y   +  AR +A S+RD ARA GR  +E+ + RA  +  +  +   EQL+   ++  
Sbjct  67   EAEYRAGLASARGEAGSIRDEARASGRAALEEQKQRASAEADAITREKTEQLRAAGESAA  126

Query  142  LDLRAHVGTMSATLASRILGVDLTASAATR  171
               RA +  +SA+LASR+LG D+T   A +
Sbjct  127  AAARADLAPLSASLASRVLGFDVTQDPALK  156


>gi|343928067|ref|ZP_08767532.1| ATP synthase subunit b [Gordonia alkanivorans NBRC 16433]
 gi|343762075|dbj|GAA14458.1| ATP synthase subunit b [Gordonia alkanivorans NBRC 16433]
Length=162

 Score = 90.9 bits (224),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 63/149 (43%), Positives = 94/149 (64%), Gaps = 0/149 (0%)

Query  23   NFLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAAQ  82
            NFL+PNGTFFVVL IF+++L VI  FVVPPI +VL ERD M+ +T  DN+ +  +F  A 
Sbjct  7    NFLLPNGTFFVVLLIFVILLLVIRKFVVPPIQQVLEERDEMIHRTAEDNRTAAAEFEDAD  66

Query  83   ADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVEL  142
              +   + EAR +A++ RD ARA+GR+ + + + RA  +  + LQ+   +L  + +    
Sbjct  67   VQFRSLLKEARGEATAKRDEARAEGREQLNEMKQRATAEADAALQSTSSELAAQGEQAAS  126

Query  143  DLRAHVGTMSATLASRILGVDLTASAATR  171
               A V T++ TLA+R+LGVD    + TR
Sbjct  127  TAAADVDTLAKTLAARVLGVDSATLSDTR  155


>gi|116671155|ref|YP_832088.1| ATP synthase F0 subunit B [Arthrobacter sp. FB24]
 gi|226741295|sp|A0JY68.1|ATPF_ARTS2 RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|116611264|gb|ABK03988.1| ATP synthase F0 subcomplex B subunit [Arthrobacter sp. FB24]
Length=182

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 55/147 (38%), Positives = 88/147 (60%), Gaps = 1/147 (0%)

Query  20   ESSNFLIPN-GTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQF  78
            E +N L+PN     VVLA F V+  ++  FVVP   K   ER   +   +A  +K+  + 
Sbjct  11   EGTNPLVPNPWEMGVVLAGFAVLFYIVVKFVVPMFEKTFAERAEAIEGGIAKAEKAQAEA  70

Query  79   AAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERD  138
            +AA  +Y + +T+AR +A+ +R+ ARA+G +++ D + +A  + A     AH Q++ ER 
Sbjct  71   SAALEEYKQQLTDARAEANRIREEARAEGAQILADLKEKAAAESARITAHAHAQIESERQ  130

Query  139  AVELDLRAHVGTMSATLASRILGVDLT  165
            A  + LRA VGT++ TLASRI+G  L+
Sbjct  131  AAVVSLRAEVGTLATTLASRIVGESLS  157


>gi|68536424|ref|YP_251129.1| F0F1 ATP synthase subunit B [Corynebacterium jeikeium K411]
 gi|260577557|ref|ZP_05845496.1| ATP synthase F0, B subunit [Corynebacterium jeikeium ATCC 43734]
 gi|123650711|sp|Q4JUJ6.1|ATPF_CORJK RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|68264023|emb|CAI37511.1| ATP synthase B chain [Corynebacterium jeikeium K411]
 gi|258604281|gb|EEW17519.1| ATP synthase F0, B subunit [Corynebacterium jeikeium ATCC 43734]
Length=186

 Score = 87.0 bits (214),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 55/163 (34%), Positives = 93/163 (58%), Gaps = 5/163 (3%)

Query  5    SAIVLAASQAAEEGGESSNFLIPNGTFFVVLAI--FLVVLAVIGTFVVPPILKVLRERDA  62
            +  +LAA +   E  ES N LIP   + +V +I  F V+L V   FV+P   +VL +R+ 
Sbjct  3    NTFLLAAEKLPME--ESVNPLIP-PLYDIVWSIIPFAVILFVFWKFVLPKFQEVLNQRED  59

Query  63   MVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQV  122
             +   +   + +  +  AA   Y+  + EAR +A+ +RD+AR+ G+K+I D + +A ++ 
Sbjct  60   QIEGGIRRAESAQAEAKAALEKYNAQLAEARTEAAQIRDDARSQGQKIIADMKAQATEES  119

Query  123  ASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLT  165
               +++ H+QL+ +R AV  DLR  +G  S  LA R+LG  L+
Sbjct  120  NRIVESGHKQLEAQRSAVVTDLRKEMGENSINLAERLLGEQLS  162


>gi|257069068|ref|YP_003155323.1| ATP synthase F0 subcomplex B subunit [Brachybacterium faecium 
DSM 4810]
 gi|256559886|gb|ACU85733.1| ATP synthase F0 subcomplex B subunit [Brachybacterium faecium 
DSM 4810]
Length=179

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 53/149 (36%), Positives = 85/149 (58%), Gaps = 1/149 (0%)

Query  24   FLIPNGTFFVVLAIFLVVLA-VIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAAQ  82
             LIP         IFLV+ A V   FV+P +  VL ER   +   + + +K  EQ    +
Sbjct  13   LLIPLPQEIWWSLIFLVIFAGVFMKFVLPRMNAVLDERAEKIEGGIRNAEKVQEQVDQLK  72

Query  83   ADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVEL  142
            +D ++ +  AR +A+S+R+ ARADG+K++++AR RA+ +    L    +QL  ER A   
Sbjct  73   SDQEQELAAARQEAASIREKARADGQKIVDEARARADAESERVLAAGRQQLSAERIAAST  132

Query  143  DLRAHVGTMSATLASRILGVDLTASAATR  171
            +LR  VGT+++ LAS+I+G  L+    +R
Sbjct  133  ELRGEVGTLASDLASKIVGESLSDDERSR  161


>gi|220913087|ref|YP_002488396.1| ATP synthase F0 subunit beta [Arthrobacter chlorophenolicus A6]
 gi|219859965|gb|ACL40307.1| ATP synthase F0, B subunit [Arthrobacter chlorophenolicus A6]
Length=184

 Score = 85.5 bits (210),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 52/148 (36%), Positives = 86/148 (59%), Gaps = 1/148 (0%)

Query  19   GESSNFLIPN-GTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQ  77
            GE  N L+PN     VVL  F +++ ++  FVVP   K   ER   +   +A  +K+  +
Sbjct  12   GEKVNPLVPNLWEMGVVLVGFAILMFIVVKFVVPMFEKTFAERAEAIEGGIAKAEKAQAE  71

Query  78   FAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRER  137
             +AA  +Y + +T+AR +A+ +R+ ARA+G +++ D + +A  + A     AH Q++ ER
Sbjct  72   ASAALEEYKQQLTDARTEANRIREEARAEGAQILADLKEKAAAESARITAQAHAQIESER  131

Query  138  DAVELDLRAHVGTMSATLASRILGVDLT  165
             A  + LR+ VGT++ TLA RI+G  L 
Sbjct  132  QAAVVSLRSEVGTLATTLAGRIVGESLN  159


>gi|340794790|ref|YP_004760253.1| ATP synthase subunit B [Corynebacterium variabile DSM 44702]
 gi|340534700|gb|AEK37180.1| ATP synthase B chain [Corynebacterium variabile DSM 44702]
Length=185

 Score = 82.4 bits (202),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 57/162 (36%), Positives = 87/162 (54%), Gaps = 3/162 (1%)

Query  7    IVLAASQAAEEGGESSNFLIPNGTFFVV-LAIFLVVLAVIGTFVVPPILKVLRERDAMVA  65
             +LAA +   E  +S N LIP     V  L  F+++  +   FV+P   +VL ER+  + 
Sbjct  5    FILAAEELPLE--DSPNPLIPASYDIVWSLVCFIIIFVLFWKFVLPTFKRVLAEREEQIE  62

Query  66   KTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVAST  125
              +   + + E+  AA   Y+  + EAR +AS +RD+ARA G+K+I +A  +AE +V   
Sbjct  63   GGIQRAEAAQEEAKAALEKYNSQLAEARTEASQIRDDARAQGQKIIAEANTKAEAEVKRK  122

Query  126  LQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTAS  167
                 + L  +RDAV  DLR  +G  S  LA ++LG DL  S
Sbjct  123  AADGEKALLAQRDAVVSDLRKDLGAASINLAEQLLGEDLADS  164


>gi|269957236|ref|YP_003327025.1| ATP synthase F0 subunit B [Xylanimonas cellulosilytica DSM 15894]
 gi|269305917|gb|ACZ31467.1| ATP synthase F0, B subunit [Xylanimonas cellulosilytica DSM 15894]
Length=194

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 52/148 (36%), Positives = 85/148 (58%), Gaps = 1/148 (0%)

Query  23   NFLIPNGTFFVVLAIFLVVLAV-IGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAA  81
            +  +P     +  A+ LV++AV    FV+PP+LKVL ER   +   +A   ++ E    A
Sbjct  19   DLFLPADYDLLWSAVVLVIIAVAFYKFVLPPMLKVLDERTEAIEGGMAQAAQAKEAAEQA  78

Query  82   QADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVE  141
                 E +T AR  A+ +RD AR +G+ ++ + R +A+++ A   +TAH Q++ ER A  
Sbjct  79   LERQQELLTAARSDAAKVRDEAREEGKAIVAEHRSKAQEEAARITETAHRQIEAERQAAA  138

Query  142  LDLRAHVGTMSATLASRILGVDLTASAA  169
            + LR  VG ++  LAS+I+G +L  SAA
Sbjct  139  VSLRTDVGDLATQLASKIVGEELADSAA  166


>gi|325963830|ref|YP_004241736.1| ATP synthase F0 subcomplex subunit beta [Arthrobacter phenanthrenivorans 
Sphe3]
 gi|323469917|gb|ADX73602.1| ATP synthase F0 subcomplex B subunit [Arthrobacter phenanthrenivorans 
Sphe3]
Length=183

 Score = 80.9 bits (198),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 53/149 (36%), Positives = 87/149 (59%), Gaps = 3/149 (2%)

Query  14   AAEEGGESSNFLIPN-GTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNK  72
            AA EG    N L+PN     VVL  F +++ ++  FVVP   K   ER   +   +A  +
Sbjct  8    AATEG--EINPLMPNLWEMGVVLVGFAILMFIVVKFVVPMFEKTFAERAEAIEGGIAKAE  65

Query  73   KSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQ  132
            K+  + +AA  +Y + +T+AR +A+ +R+ ARA+G +++ D + +A  + A     AH Q
Sbjct  66   KAQAEASAALEEYKQQLTDARTEANRIREEARAEGAQILADLKEKAAAESARITAQAHAQ  125

Query  133  LKRERDAVELDLRAHVGTMSATLASRILG  161
            ++ ER A  + LR+ VGT++ TLA RI+G
Sbjct  126  IESERQAAVVSLRSEVGTLATTLAGRIVG  154


>gi|183602784|ref|ZP_02964147.1| F0F1 ATP synthase subunit B [Bifidobacterium animalis subsp. 
lactis HN019]
 gi|219683120|ref|YP_002469503.1| ATP synthase subunit B [Bifidobacterium animalis subsp. lactis 
AD011]
 gi|241191449|ref|YP_002968843.1| F0F1 ATP synthase subunit B [Bifidobacterium animalis subsp. 
lactis Bl-04]
 10 more sequence titles
 Length=175

 Score = 79.0 bits (193),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 47/147 (32%), Positives = 80/147 (55%), Gaps = 1/147 (0%)

Query  23   NFLIPNGTFFVVLAIFLVVLAVI-GTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAA  81
            +  +P     V   I L+++A+    F +P    V  ER A +   LA  +++ +    A
Sbjct  9    DLFLPETYDIVWSLIILIIVALFFYKFFLPKFQSVFDERTAKIEGGLAKAEQAQKDAEEA  68

Query  82   QADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVE  141
            +  Y   ++ ARV+AS +RD+ARA+   +I DAR RAE + A     A   L+ ++    
Sbjct  69   KKKYQAQLSTARVEASKIRDDARAEASHIIADARSRAETEAAQITANAERSLESQQQKAM  128

Query  142  LDLRAHVGTMSATLASRILGVDLTASA  168
            ++L+  VG+++ +LAS+ILG +L  SA
Sbjct  129  VNLKGEVGSLATSLASKILGSELQDSA  155


>gi|119026449|ref|YP_910294.1| F0F1 ATP synthase subunit B [Bifidobacterium adolescentis ATCC 
15703]
 gi|226741309|sp|A1A3C9.1|ATPF_BIFAA RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|118766033|dbj|BAF40212.1| protein with similarity to ATP synthase B chain [Bifidobacterium 
adolescentis ATCC 15703]
Length=173

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 46/141 (33%), Positives = 73/141 (52%), Gaps = 0/141 (0%)

Query  24   FLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAAQA  83
            FL  +   F  L I ++V      F +P    V  ER A +   +A  +++ +    A+A
Sbjct  11   FLPKSYDIFWSLVILIIVAVFFYKFFLPKFQAVFDERAAKIEGGIAKAEQAQKDADEAKA  70

Query  84   DYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVELD  143
             YD  ++ ARV+AS +RD+ARA+   +I DAR RAE   A    TA   ++ ++    + 
Sbjct  71   KYDAQLSNARVEASKIRDDARAEASHIIADARTRAEADAAQITATAQRSIESQQQQALVS  130

Query  144  LRAHVGTMSATLASRILGVDL  164
            L+  VG ++  LA +ILG  L
Sbjct  131  LKGEVGVLATALAGKILGSKL  151


>gi|154488036|ref|ZP_02029153.1| hypothetical protein BIFADO_01605 [Bifidobacterium adolescentis 
L2-32]
 gi|154083509|gb|EDN82554.1| hypothetical protein BIFADO_01605 [Bifidobacterium adolescentis 
L2-32]
Length=173

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 46/141 (33%), Positives = 73/141 (52%), Gaps = 0/141 (0%)

Query  24   FLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAAQA  83
            FL  +   F  L I ++V      F +P    V  ER A +   +A  +++ +    A+A
Sbjct  11   FLPKSYDIFWSLVILIIVAVFFYKFFLPKFQAVFDERAAKIEGGIAKAEQAQKDADEAKA  70

Query  84   DYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVELD  143
             YD  ++ ARV+AS +RD+ARA+   +I DAR RAE   A    TA   ++ ++    + 
Sbjct  71   KYDAQLSSARVEASKIRDDARAEASHIIADARTRAEADAAQITATAQRSIESQQQQALVS  130

Query  144  LRAHVGTMSATLASRILGVDL  164
            L+  VG ++  LA +ILG  L
Sbjct  131  LKGEVGVLATALAGKILGSKL  151


>gi|336325971|ref|YP_004605937.1| F0F1 ATP synthase subunit B [Corynebacterium resistens DSM 45100]
 gi|336101953|gb|AEI09773.1| F0F1 ATP synthase subunit B [Corynebacterium resistens DSM 45100]
Length=186

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 52/163 (32%), Positives = 94/163 (58%), Gaps = 5/163 (3%)

Query  5    SAIVLAASQAAEEGGESSNFLIPNGTFFVVLAI--FLVVLAVIGTFVVPPILKVLRERDA  62
            +  +LAA Q   E  +  N L+P   + VV ++  F+++L V   FV+P   +VL +R+ 
Sbjct  3    NTFLLAAEQLPLE--KPVNPLLP-PLYDVVWSLIPFVIILLVFWKFVLPKFQEVLNQRED  59

Query  63   MVAKTLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQV  122
             +   +   + +  +  AA   Y+  + EAR +A+ +RD+AR  G+K+I D + +A ++ 
Sbjct  60   QIEGGMQRAEAAQAEAQAALEKYNAQLAEARTEAAQIRDDARNQGQKIIADMKAQATEES  119

Query  123  ASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLT  165
            A  +++ ++QL+ +R AV  DLR  +G  S +LA R+LG  L+
Sbjct  120  ARIVESGNKQLEAQRSAVVSDLRKEMGENSISLAERLLGEQLS  162


>gi|119963814|ref|YP_948318.1| ATP synthase F0, B subunit [Arthrobacter aurescens TC1]
 gi|226741351|sp|A1R7V6.1|ATPF_ARTAT RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|119950673|gb|ABM09584.1| ATP synthase F0, B subunit [Arthrobacter aurescens TC1]
Length=185

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 54/153 (36%), Positives = 89/153 (59%), Gaps = 1/153 (0%)

Query  14   AAEEGGESSNFLIPN-GTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNK  72
            AA EG   +N L+PN     VVL  F V++ ++  FVVP   K   ER   +   +A  +
Sbjct  8    AATEGAAEANPLVPNVWEMGVVLVGFAVLMYIVVKFVVPMFEKTFAERAEAIEGGIAKAE  67

Query  73   KSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQ  132
             +  + +AA  +Y + +T+AR +A+ +R+ ARA+G +++ D + +A  + A   + AH  
Sbjct  68   AAQAEASAALEEYKQQLTDARAEANRIREEARAEGAQILADLKAKAAAESARITEQAHAA  127

Query  133  LKRERDAVELDLRAHVGTMSATLASRILGVDLT  165
            ++ ER A  + LR+ VGT++ TLA RI+G  LT
Sbjct  128  IESERQAAVVSLRSEVGTLATTLAGRIVGEALT  160


>gi|284992520|ref|YP_003411074.1| ATP synthase F0 subunit B [Geodermatophilus obscurus DSM 43160]
 gi|284065765|gb|ADB76703.1| ATP synthase F0, B subunit [Geodermatophilus obscurus DSM 43160]
Length=195

 Score = 77.4 bits (189),  Expect = 8e-13, Method: Compositional matrix adjust.
 Identities = 45/146 (31%), Positives = 76/146 (53%), Gaps = 1/146 (0%)

Query  20   ESSNFLIPN-GTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQF  78
            ES+N L+P  G   +    F +   V+G FV P   +V R R   +   +   +    + 
Sbjct  7    ESANPLLPPVGEIIIGTITFAIAFFVLGKFVWPRFEQVFRARREAIEGGIERAESMQAEA  66

Query  79   AAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERD  138
             AA   Y   + EAR +A+ +RD ARA+G++++E+ R +A+++ A  +    EQL   R 
Sbjct  67   KAALEQYRAQLAEARTEAAQIRDQARAEGQQILEELRAQAQEESARIVARGEEQLATSRQ  126

Query  139  AVELDLRAHVGTMSATLASRILGVDL  164
             V  +LR  +G ++  LA R++G  L
Sbjct  127  QVVNELRGQIGRLAVDLAGRVVGESL  152


>gi|225352597|ref|ZP_03743620.1| hypothetical protein BIFPSEUDO_04222 [Bifidobacterium pseudocatenulatum 
DSM 20438]
 gi|225156791|gb|EEG70185.1| hypothetical protein BIFPSEUDO_04222 [Bifidobacterium pseudocatenulatum 
DSM 20438]
Length=173

 Score = 76.3 bits (186),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 44/141 (32%), Positives = 73/141 (52%), Gaps = 0/141 (0%)

Query  24   FLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAAQA  83
            FL  +   F  L I ++V      F +P    V  ER A +   +A  +++ +    A+A
Sbjct  11   FLPKSYDIFWSLVILIIVAVFFYKFFLPKFQAVFDERAAKIEGGIAKAEQAQKDADEAKA  70

Query  84   DYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVELD  143
             Y+  +++ARV+AS +RD+AR +   +I DAR RAE   A    TA   ++ ++    + 
Sbjct  71   KYEAQLSKARVEASKIRDDARTEASHIIADARTRAENDAAQITATAQRSIESQQQQALVS  130

Query  144  LRAHVGTMSATLASRILGVDL  164
            L+  VG ++  LA +ILG  L
Sbjct  131  LKGEVGVLATALAGKILGSKL  151


>gi|171742079|ref|ZP_02917886.1| hypothetical protein BIFDEN_01184 [Bifidobacterium dentium ATCC 
27678]
 gi|283456795|ref|YP_003361359.1| ATP synthase subunit B [Bifidobacterium dentium Bd1]
 gi|306822062|ref|ZP_07455446.1| ATP synthase F0 sector subunit B [Bifidobacterium dentium ATCC 
27679]
 gi|309802600|ref|ZP_07696704.1| ATP synthase F0, B subunit [Bifidobacterium dentium JCVIHMP022]
 gi|171277693|gb|EDT45354.1| hypothetical protein BIFDEN_01184 [Bifidobacterium dentium ATCC 
27678]
 gi|283103429|gb|ADB10535.1| ATP synthase B chain [Bifidobacterium dentium Bd1]
 gi|304554662|gb|EFM42565.1| ATP synthase F0 sector subunit B [Bifidobacterium dentium ATCC 
27679]
 gi|308220664|gb|EFO76972.1| ATP synthase F0, B subunit [Bifidobacterium dentium JCVIHMP022]
Length=173

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 45/141 (32%), Positives = 73/141 (52%), Gaps = 0/141 (0%)

Query  24   FLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAAQA  83
            FL  +   F  L I ++V      F +P    V  ER A +   +A  +++ +    A+A
Sbjct  11   FLPKSYDIFWSLVILIIVAVFFYKFFLPKFQAVFDERAAKIEGGIAKAEQAQKDADEAKA  70

Query  84   DYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVELD  143
             Y+  ++ ARV+AS +RD+ARA+   +I DAR RAE   A    TA   ++ ++    + 
Sbjct  71   KYEAQLSTARVEASKIRDDARAEASHIIADARSRAESDAAQITATAQRSIESQQQQALVS  130

Query  144  LRAHVGTMSATLASRILGVDL  164
            L+  VG ++  LA +ILG  L
Sbjct  131  LKGEVGVLATALAGKILGSKL  151


>gi|334563641|ref|ZP_08516632.1| F0F1 ATP synthase subunit B [Corynebacterium bovis DSM 20582]
Length=180

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 45/142 (32%), Positives = 80/142 (57%), Gaps = 1/142 (0%)

Query  25   LIPNGTFFVV-LAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAAQA  83
            LIP     V  L  F++VL +   FV+P   +VL +R+  +   +   + +  +  AA  
Sbjct  15   LIPELYDLVWSLVPFIIVLLIFWKFVLPKFQEVLTQREDQIEGGIQRAEAAQAEAKAALE  74

Query  84   DYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVELD  143
             Y+  + EAR +A+ +RD AR+ G++++ D + +A  + A  ++  H+QL+ +R +V  +
Sbjct  75   KYNAQLAEARTEAAQIRDEARSQGQRIVADMKAQASDESARIVEAGHKQLEAQRASVVAE  134

Query  144  LRAHVGTMSATLASRILGVDLT  165
            LR  +G+ S  LA RILG  L+
Sbjct  135  LRKDMGSQSVALAERILGAQLS  156


>gi|229819798|ref|YP_002881324.1| ATP synthase F0 subunit B [Beutenbergia cavernae DSM 12333]
 gi|229565711|gb|ACQ79562.1| ATP synthase F0, B subunit [Beutenbergia cavernae DSM 12333]
Length=200

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 52/155 (34%), Positives = 86/155 (56%), Gaps = 8/155 (5%)

Query  15   AEEGGES-SNFLIPNGTFFVVLAIFLVVLAVIGTFV----VPPILKVLRERDAMVAKTLA  69
            A+EGGES  N  IP  ++ +V +  LVV  +I  FV    +P +  +L ER A +   L 
Sbjct  10   AQEGGESEQNLFIP-ASYDIVWS--LVVTVIIAFFVYRYLMPKMTAILDERSAKIEGGLE  66

Query  70   DNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTA  129
               K   +   A+ + +  + EAR +A+ +R+ A+ DG  ++ +AR RA+ +    +++A
Sbjct  67   HAAKVQAEADKAREEQEAVLAEARGEAARIREEAQGDGAAIVAEARGRAQAEANRIVESA  126

Query  130  HEQLKRERDAVELDLRAHVGTMSATLASRILGVDL  164
              Q+  ER    + LR+ VGT++  LASRI+G  L
Sbjct  127  QRQIDAERQQAVVSLRSEVGTLATELASRIVGESL  161


>gi|184200626|ref|YP_001854833.1| ATP synthase subunit b [Kocuria rhizophila DC2201]
 gi|226741490|sp|B2GLY6.1|ATPF_KOCRD RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase 
F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: 
Full=F-type ATPase subunit b; Short=F-ATPase subunit 
b
 gi|183580856|dbj|BAG29327.1| ATP synthase subunit b [Kocuria rhizophila DC2201]
Length=178

 Score = 75.5 bits (184),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 48/147 (33%), Positives = 84/147 (58%), Gaps = 1/147 (0%)

Query  20   ESSNFLIPNGTFFVVLAIFLVVLAVIG-TFVVPPILKVLRERDAMVAKTLADNKKSDEQF  78
            E +N LIP+    ++  I  V+L  I   ++VP   KV ++R   +   LA  K +  + 
Sbjct  5    EEANPLIPDVWEMLITGIGFVILLFIAIKYIVPAFEKVFKDRADAIEGGLAKAKAAQAEA  64

Query  79   AAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERD  138
             AA+ +Y++ +  AR++A  +R+ AR++G K++ D + RA  + A   + AH+ ++ ER 
Sbjct  65   KAARDEYNQQLESARLEAQKIREEARSEGEKILADFKDRANMESARITENAHKAIEAERA  124

Query  139  AVELDLRAHVGTMSATLASRILGVDLT  165
            A  + LR  VGT++  LAS+I+G  L 
Sbjct  125  AAVVSLRDEVGTLATQLASKIVGESLN  151


>gi|310288112|ref|YP_003939371.1| ATP synthase subunit B [Bifidobacterium bifidum S17]
 gi|313140778|ref|ZP_07802971.1| F0F1 ATP synthase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|309252049|gb|ADO53797.1| ATP synthase B chain [Bifidobacterium bifidum S17]
 gi|313133288|gb|EFR50905.1| F0F1 ATP synthase subunit B [Bifidobacterium bifidum NCIMB 41171]
Length=176

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 46/143 (33%), Positives = 75/143 (53%), Gaps = 1/143 (0%)

Query  23   NFLIPNGTFFVVLAIFLVVLAVI-GTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAA  81
               IP     V   I LV++A+    F +P    +  ER A +   +A  ++S +   AA
Sbjct  11   KLFIPQVYDIVWSLIILVIVALFFHKFFMPKFNAIFDERAAKIEGNIAKAEQSKKDADAA  70

Query  82   QADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVE  141
            ++ Y+  ++ ARV+AS +RD+ARA+   +I DAR RAE   A     A   ++ ++    
Sbjct  71   KSKYEAQLSTARVEASKIRDDARAEASHIIADARSRAESDAAQITANAQRSIESQQQQAL  130

Query  142  LDLRAHVGTMSATLASRILGVDL  164
            + L+  VGT++  LA +ILG  L
Sbjct  131  VSLKGEVGTLATALAGKILGAKL  153


>gi|311064985|ref|YP_003971711.1| ATP synthase subunit B [Bifidobacterium bifidum PRL2010]
 gi|310867305|gb|ADP36674.1| AtpF ATP synthase B chain [Bifidobacterium bifidum PRL2010]
Length=175

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 46/143 (33%), Positives = 75/143 (53%), Gaps = 1/143 (0%)

Query  23   NFLIPNGTFFVVLAIFLVVLAVI-GTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAA  81
               IP     V   I LV++A+    F +P    +  ER A +   +A  ++S +   AA
Sbjct  10   KLFIPQVYDIVWSLIILVIVALFFHKFFMPKFNAIFDERAAKIEGNIAKAEQSKKDADAA  69

Query  82   QADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVE  141
            ++ Y+  ++ ARV+AS +RD+ARA+   +I DAR RAE   A     A   ++ ++    
Sbjct  70   KSKYEAQLSTARVEASKIRDDARAEASHIIADARSRAESDAAQITANAQRSIESQQQQAL  129

Query  142  LDLRAHVGTMSATLASRILGVDL  164
            + L+  VGT++  LA +ILG  L
Sbjct  130  VSLKGEVGTLATALAGKILGAKL  152


>gi|212715315|ref|ZP_03323443.1| hypothetical protein BIFCAT_00208 [Bifidobacterium catenulatum 
DSM 16992]
 gi|212661772|gb|EEB22347.1| hypothetical protein BIFCAT_00208 [Bifidobacterium catenulatum 
DSM 16992]
Length=173

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 44/141 (32%), Positives = 72/141 (52%), Gaps = 0/141 (0%)

Query  24   FLIPNGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAAQA  83
            FL  +   F  L I ++V      F +P    V  ER A +   +A  +++ +    A+A
Sbjct  11   FLPKSYDIFWSLVILIIVAVFFYKFFLPKFQAVFDERAAKIEGGIAKAEQAQKDADEAKA  70

Query  84   DYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVELD  143
             Y+  +++ARV AS +RD+AR +   +I DAR RAE   A    TA   ++ ++    + 
Sbjct  71   KYEAQLSKARVDASKIRDDARTEASHIIADARTRAESDAAQITATAQRSIESQQQQALVS  130

Query  144  LRAHVGTMSATLASRILGVDL  164
            L+  VG ++  LA +ILG  L
Sbjct  131  LKGEVGVLATALAGKILGSKL  151


>gi|227501701|ref|ZP_03931750.1| F0F1 ATP synthase subunit B [Corynebacterium accolens ATCC 49725]
 gi|306835878|ref|ZP_07468873.1| ATP synthase F0 sector subunit B [Corynebacterium accolens ATCC 
49726]
 gi|227077726|gb|EEI15689.1| F0F1 ATP synthase subunit B [Corynebacterium accolens ATCC 49725]
 gi|304568243|gb|EFM43813.1| ATP synthase F0 sector subunit B [Corynebacterium accolens ATCC 
49726]
Length=189

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 48/159 (31%), Positives = 84/159 (53%), Gaps = 1/159 (0%)

Query  8    VLAASQAAEEGGESSNFLIP-NGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAK  66
            +LAA      G  S + L+P N   F  L  F+V+L +   FV+P   K+L ER+  +  
Sbjct  7    MLAAEGEENPGSGSFSVLLPKNYDIFWSLLCFIVILWLFWKFVLPRYTKLLEEREDRIEG  66

Query  67   TLADNKKSDEQFAAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTL  126
             +   +    +  AA   Y+  + +AR +A+ +R+ AR  G+++  DA+ +AE++    +
Sbjct  67   GMKRAEAQQAEAKAALEKYNAQLADARAEAAEIREQARERGKQIEADAKSQAEEESRRIV  126

Query  127  QTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLT  165
                +QL+  R  V  +LR+ +G  S  LA +ILG +L+
Sbjct  127  ANGEKQLEASRAQVVTELRSEMGQNSINLAEKILGGELS  165


>gi|296128922|ref|YP_003636172.1| ATP synthase F0, B subunit [Cellulomonas flavigena DSM 20109]
 gi|296020737|gb|ADG73973.1| ATP synthase F0, B subunit [Cellulomonas flavigena DSM 20109]
Length=193

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 49/146 (34%), Positives = 83/146 (57%), Gaps = 1/146 (0%)

Query  20   ESSNFLIPNGTFFVVLAIFLVVLAV-IGTFVVPPILKVLRERDAMVAKTLADNKKSDEQF  78
            E    L+P G   +  AI LV +A+    FV+P    VL ER A +   +A  + +  + 
Sbjct  19   EGIRLLVPAGYDLLWSAIVLVGIAIPFYKFVLPKFQAVLDERTAKIEGGIAKAESAQAEA  78

Query  79   AAAQADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERD  138
            AA  A+Y + + +AR +A+ +R++AR +  +++ +AR RA+++ A   +TA  Q+  ER 
Sbjct  79   AAQLAEYQQLLADARSEAARIREDARTEAGQIVAEARTRAQEEAARIAETAQRQIDAERQ  138

Query  139  AVELDLRAHVGTMSATLASRILGVDL  164
               + LR  VGT++  LAS+I+G  L
Sbjct  139  QAAVSLRTDVGTLATQLASKIVGESL  164


>gi|296268881|ref|YP_003651513.1| ATP synthase F0 subunit B [Thermobispora bispora DSM 43833]
 gi|296091668|gb|ADG87620.1| ATP synthase F0, B subunit [Thermobispora bispora DSM 43833]
Length=181

 Score = 73.6 bits (179),  Expect = 9e-12, Method: Compositional matrix adjust.
 Identities = 58/169 (35%), Positives = 86/169 (51%), Gaps = 10/169 (5%)

Query  7    IVLAASQAAEEGGESSNFLIPNGTFFVVLAI-FLVVLAVIGTFVVPPILKVLRERDAMVA  65
            + LAA+  A EG   +N L+P+    VV +  FLVV  V+G  + P I K L ER   + 
Sbjct  1    MTLAATPLAAEG---ANPLLPHAYELVVGSFAFLVVFLVVGKILTPRIQKTLAERTEAIE  57

Query  66   KTLADNKKSDEQFAAAQ---ADYDEAMTEARVQASSLRDNARADGRKVIEDARVRAEQQV  122
              +   K++ E  A AQ     Y   + EAR +A+ LR+ AR  G ++  + R  AE + 
Sbjct  58   GGI---KRAQELQAEAQRTLEQYRAQLAEARHEAARLREEAREQGARIKAELRQEAEAEA  114

Query  123  ASTLQTAHEQLKRERDAVELDLRAHVGTMSATLASRILGVDLTASAATR  171
               ++ A  Q++ ER    + LR  +G +S  LASRI+G  L   A  R
Sbjct  115  RRIIEAAQAQIEAERRQALIQLRGEIGRLSVELASRIVGESLEDEARQR  163


>gi|109900597|ref|YP_663852.1| F0F1 ATP synthase subunit B [Pseudoalteromonas atlantica T6c]
 gi|123360113|sp|Q15MU0.1|ATPF2_PSEA6 RecName: Full=ATP synthase subunit b 2; AltName: Full=ATP synthase 
F(0) sector subunit b 2; AltName: Full=ATPase subunit 
I 2; AltName: Full=F-type ATPase subunit b 2; Short=F-ATPase 
subunit b 2
 gi|109702878|gb|ABG42798.1| ATP synthase F0 subcomplex B subunit [Pseudoalteromonas atlantica 
T6c]
Length=156

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 41/143 (29%), Positives = 75/143 (53%), Gaps = 0/143 (0%)

Query  28   NGTFFVVLAIFLVVLAVIGTFVVPPILKVLRERDAMVAKTLADNKKSDEQFAAAQADYDE  87
            N T F  L  F+  +     FV PPI+  + ER   +A  LA +++ ++    AQA   E
Sbjct  4    NATLFGELLAFIFFVWFCMKFVWPPIMGAIEERQKKIADGLAASERGEKDLELAQAKATE  63

Query  88   AMTEARVQASSLRDNARADGRKVIEDARVRAEQQVASTLQTAHEQLKRERDAVELDLRAH  147
             + EA+ QA+ + + A+  G +++++   RA Q+  + +   H +++ ER+  + DLR  
Sbjct  64   QLKEAKTQAAGIIEQAKKRGSQIVDEETQRAHQERENIIAQGHAEIEAERNRAKEDLRKQ  123

Query  148  VGTMSATLASRILGVDLTASAAT  170
            V  ++   A RIL   + A+A +
Sbjct  124  VAALAVAGAERILERQIDAAAQS  146



Lambda     K      H
   0.316    0.128    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 136720389372


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40