BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1331
Length=101
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608471|ref|NP_215847.1| ATP-dependent Clp protease adaptor ... 209 1e-52
gi|240169486|ref|ZP_04748145.1| hypothetical protein MkanA1_0924... 190 6e-47
gi|296170273|ref|ZP_06851864.1| ATP-dependent Clp protease adapt... 190 7e-47
gi|342858009|ref|ZP_08714665.1| ATP-dependent Clp protease adapt... 188 3e-46
gi|41408527|ref|NP_961363.1| ATP-dependent Clp protease adaptor ... 182 1e-44
gi|183984038|ref|YP_001852329.1| hypothetical protein MMAR_4067 ... 179 1e-43
gi|15827587|ref|NP_301850.1| ATP-dependent Clp protease adaptor ... 179 1e-43
gi|336460962|gb|EGO39843.1| hypothetical protein MAPs_35410 [Myc... 179 1e-43
gi|466913|gb|AAA50888.1| B1549_C2_207 [Mycobacterium leprae] 178 2e-43
gi|254774371|ref|ZP_05215887.1| ATP-dependent Clp protease adapt... 177 3e-43
gi|118472588|ref|YP_889165.1| ATP-dependent Clp protease adaptor... 170 8e-41
gi|333989977|ref|YP_004522591.1| ATP-dependent Clp protease adap... 164 3e-39
gi|120405250|ref|YP_955079.1| ATP-dependent Clp protease adaptor... 163 1e-38
gi|145222937|ref|YP_001133615.1| ATP-dependent Clp protease adap... 159 2e-37
gi|108800817|ref|YP_641014.1| ATP-dependent Clp protease adaptor... 156 8e-37
gi|289569343|ref|ZP_06449570.1| LOW QUALITY PROTEIN: conserved h... 153 7e-36
gi|169628566|ref|YP_001702215.1| ATP-dependent Clp protease adap... 152 2e-35
gi|118619139|ref|YP_907471.1| hypothetical protein MUL_3931 [Myc... 144 6e-33
gi|226307371|ref|YP_002767331.1| ATP-dependent Clp protease adap... 136 1e-30
gi|229494029|ref|ZP_04387798.1| ATP-dependent Clp protease adapt... 136 1e-30
gi|54023053|ref|YP_117295.1| ATP-dependent Clp protease adaptor ... 135 1e-30
gi|226360564|ref|YP_002778342.1| ATP-dependent Clp protease adap... 133 8e-30
gi|111018445|ref|YP_701417.1| ATP-dependent Clp protease adaptor... 132 2e-29
gi|312139203|ref|YP_004006539.1| ATP-dependent clp protease adap... 132 2e-29
gi|343927063|ref|ZP_08766550.1| ATP-dependent Clp protease adapt... 130 4e-29
gi|302529732|ref|ZP_07282074.1| ATP-dependent Clp protease adapt... 130 6e-29
gi|296393925|ref|YP_003658809.1| ATP-dependent Clp protease adap... 128 3e-28
gi|300789536|ref|YP_003769827.1| ATP-dependent Clp protease adap... 128 3e-28
gi|262201899|ref|YP_003273107.1| ATP-dependent Clp protease adap... 128 3e-28
gi|257056896|ref|YP_003134728.1| hypothetical protein Svir_29230... 127 4e-28
gi|296139013|ref|YP_003646256.1| ATP-dependent Clp protease adap... 127 4e-28
gi|254819164|ref|ZP_05224165.1| ATP-dependent Clp protease adapt... 127 5e-28
gi|333921288|ref|YP_004494869.1| ATP-dependent Clp protease adap... 127 6e-28
gi|134097791|ref|YP_001103452.1| ATP-dependent Clp protease adap... 127 6e-28
gi|326385034|ref|ZP_08206706.1| ATP-dependent Clp protease adapt... 125 2e-27
gi|86739577|ref|YP_479977.1| ATP-dependent Clp protease adaptor ... 125 3e-27
gi|256375147|ref|YP_003098807.1| ATP-dependent Clp protease adap... 124 4e-27
gi|284989906|ref|YP_003408460.1| ATP-dependent Clp protease adap... 124 6e-27
gi|317508765|ref|ZP_07966415.1| ATP-dependent Clp protease adapt... 123 1e-26
gi|229821222|ref|YP_002882748.1| ATP-dependent Clp protease adap... 121 3e-26
gi|295836847|ref|ZP_06823780.1| ATP-dependent Clp protease adapt... 120 6e-26
gi|296268919|ref|YP_003651551.1| ATP-dependent Clp protease adap... 120 6e-26
gi|333024809|ref|ZP_08452873.1| putative ATP-dependent Clp prote... 120 8e-26
gi|336177275|ref|YP_004582650.1| ATP-dependent Clp protease adap... 120 8e-26
gi|238063125|ref|ZP_04607834.1| ATP-dependent Clp protease adapt... 120 9e-26
gi|111220948|ref|YP_711742.1| ATP-dependent Clp protease adaptor... 119 1e-25
gi|318057187|ref|ZP_07975910.1| ATP-dependent Clp protease adapt... 119 1e-25
gi|302521553|ref|ZP_07273895.1| ATP-dependent Clp protease adapt... 119 1e-25
gi|158317405|ref|YP_001509913.1| ATP-dependent Clp protease adap... 119 1e-25
gi|336324990|ref|YP_004604956.1| ATP-dependent Clp protease adap... 119 1e-25
>gi|15608471|ref|NP_215847.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis H37Rv]
gi|15840786|ref|NP_335823.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis CDC1551]
gi|31792527|ref|NP_855020.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
bovis AF2122/97]
81 more sequence titles
Length=101
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%), Gaps = 0/101 (0%)
Query 1 MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK
Sbjct 1 MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
Query 61 LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR
Sbjct 61 LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
>gi|240169486|ref|ZP_04748145.1| hypothetical protein MkanA1_09246 [Mycobacterium kansasii ATCC
12478]
Length=101
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/101 (91%), Positives = 94/101 (94%), Gaps = 0/101 (0%)
Query 1 MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
M SAPAKPG+T QRESAPVDVT WVT+VWDDPVNLMSYVTYVFQKLFGYSEPHATK
Sbjct 1 MVAASAPAKPGSTGQRESAPVDVTASPWVTVVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
Query 61 LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
LMLQVHNEGKAVVSAGSRE+MEVDVSKLHAAGLWATMQQDR
Sbjct 61 LMLQVHNEGKAVVSAGSREAMEVDVSKLHAAGLWATMQQDR 101
>gi|296170273|ref|ZP_06851864.1| ATP-dependent Clp protease adapter protein ClpS [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894996|gb|EFG74715.1| ATP-dependent Clp protease adapter protein ClpS [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=101
Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 91/101 (91%), Positives = 94/101 (94%), Gaps = 0/101 (0%)
Query 1 MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
M V+SAP KPGTT QRESAPVD T WVTIVWDDPVNLM+YVTYVFQKLFGYSEPHATK
Sbjct 1 MVVMSAPTKPGTTGQRESAPVDATASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHATK 60
Query 61 LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
LMLQVHNEG+AVVSAGSRESMEVDVSKLHAAGLWATMQQDR
Sbjct 61 LMLQVHNEGRAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
>gi|342858009|ref|ZP_08714665.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
colombiense CECT 3035]
gi|342135342|gb|EGT88508.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
colombiense CECT 3035]
Length=101
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/101 (90%), Positives = 93/101 (93%), Gaps = 0/101 (0%)
Query 1 MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
M V+SAP KPGTT QRESAP + T WVTIVWDDPVNLM+YVTYVFQKLFGYSEPHATK
Sbjct 1 MVVMSAPTKPGTTGQRESAPAETTASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHATK 60
Query 61 LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR
Sbjct 61 LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
>gi|41408527|ref|NP_961363.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
avium subsp. paratuberculosis K-10]
gi|118463948|ref|YP_880786.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
avium 104]
gi|67460344|sp|Q73X80.1|CLPS_MYCPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|158512435|sp|A0QCZ8.1|CLPS_MYCA1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|41396883|gb|AAS04746.1| hypothetical protein MAP_2429c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118165235|gb|ABK66132.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
avium 104]
Length=105
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/105 (86%), Positives = 95/105 (91%), Gaps = 4/105 (3%)
Query 1 MAVVSAP----AKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEP 56
M V+SAP ++PGTT QRESAP DVT WVTIVWDDPVNLM+YVTYVFQKLFGYSEP
Sbjct 1 MVVMSAPTEPKSRPGTTGQRESAPEDVTASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEP 60
Query 57 HATKLMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
HATKLMLQVHNEGKAVVSAGSRE+MEVDVSKLHAAGLWATMQQDR
Sbjct 61 HATKLMLQVHNEGKAVVSAGSREAMEVDVSKLHAAGLWATMQQDR 105
>gi|183984038|ref|YP_001852329.1| hypothetical protein MMAR_4067 [Mycobacterium marinum M]
gi|238690951|sp|B2HQI2.1|CLPS_MYCMM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|183177364|gb|ACC42474.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=101
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/101 (86%), Positives = 91/101 (91%), Gaps = 0/101 (0%)
Query 1 MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
M V SAPAKPG+ Q+ESA D T WVTIVWDDPVNLM+YVTYVFQKLFGYSEPHATK
Sbjct 1 MVVASAPAKPGSVGQQESASRDATASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHATK 60
Query 61 LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
LMLQVHNEG+AVVSAGSRE+MEVDVSKLHAAGLWATMQQDR
Sbjct 61 LMLQVHNEGRAVVSAGSREAMEVDVSKLHAAGLWATMQQDR 101
>gi|15827587|ref|NP_301850.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
leprae TN]
gi|221230064|ref|YP_002503480.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
leprae Br4923]
gi|13638637|sp|P53423.2|CLPS_MYCLE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|13093138|emb|CAC31546.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933171|emb|CAR71260.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=108
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/101 (85%), Positives = 90/101 (90%), Gaps = 0/101 (0%)
Query 1 MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
+A + +P TTWQ ESAPVD+T WVTIVWDDPVNLM+YVTYVFQKLFGYSEPHATK
Sbjct 8 LAPIEPKVRPNTTWQHESAPVDITAARWVTIVWDDPVNLMAYVTYVFQKLFGYSEPHATK 67
Query 61 LMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
LMLQVHNEGKAVVS GSRESMEVDVSKLHAAGLWATMQQDR
Sbjct 68 LMLQVHNEGKAVVSMGSRESMEVDVSKLHAAGLWATMQQDR 108
>gi|336460962|gb|EGO39843.1| hypothetical protein MAPs_35410 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=102
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/102 (87%), Positives = 93/102 (92%), Gaps = 4/102 (3%)
Query 4 VSAP----AKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHAT 59
+SAP ++PGTT QRESAP DVT WVTIVWDDPVNLM+YVTYVFQKLFGYSEPHAT
Sbjct 1 MSAPTEPKSRPGTTGQRESAPEDVTASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHAT 60
Query 60 KLMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
KLMLQVHNEGKAVVSAGSRE+MEVDVSKLHAAGLWATMQQDR
Sbjct 61 KLMLQVHNEGKAVVSAGSREAMEVDVSKLHAAGLWATMQQDR 102
>gi|466913|gb|AAA50888.1| B1549_C2_207 [Mycobacterium leprae]
Length=94
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/93 (91%), Positives = 87/93 (94%), Gaps = 0/93 (0%)
Query 9 KPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNE 68
+P TTWQ ESAPVD+T WVTIVWDDPVNLM+YVTYVFQKLFGYSEPHATKLMLQVHNE
Sbjct 2 RPNTTWQHESAPVDITAARWVTIVWDDPVNLMAYVTYVFQKLFGYSEPHATKLMLQVHNE 61
Query 69 GKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
GKAVVS GSRESMEVDVSKLHAAGLWATMQQDR
Sbjct 62 GKAVVSMGSRESMEVDVSKLHAAGLWATMQQDR 94
>gi|254774371|ref|ZP_05215887.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
avium subsp. avium ATCC 25291]
Length=102
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/102 (86%), Positives = 93/102 (92%), Gaps = 4/102 (3%)
Query 4 VSAP----AKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHAT 59
+SAP ++PGTT QRESAP +VT WVTIVWDDPVNLM+YVTYVFQKLFGYSEPHAT
Sbjct 1 MSAPTEPKSRPGTTGQRESAPEEVTASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHAT 60
Query 60 KLMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
KLMLQVHNEGKAVVSAGSRE+MEVDVSKLHAAGLWATMQQDR
Sbjct 61 KLMLQVHNEGKAVVSAGSREAMEVDVSKLHAAGLWATMQQDR 102
>gi|118472588|ref|YP_889165.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
smegmatis str. MC2 155]
gi|118173875|gb|ABK74771.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
smegmatis str. MC2 155]
Length=100
Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/99 (84%), Positives = 88/99 (89%), Gaps = 0/99 (0%)
Query 3 VVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLM 62
V A A+PGT + + A V+ T+ WVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLM
Sbjct 2 VTPAKARPGTREEVDVASVESTEAPWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLM 61
Query 63 LQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
LQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR
Sbjct 62 LQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 100
>gi|333989977|ref|YP_004522591.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
sp. JDM601]
gi|333485945|gb|AEF35337.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
sp. JDM601]
Length=94
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/93 (87%), Positives = 84/93 (91%), Gaps = 0/93 (0%)
Query 9 KPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNE 68
KP T QR + PV+ T WVTIVWDDPVNLM+YVTYVFQKLFGYSEPHATKLMLQVH+E
Sbjct 2 KPQGTGQRHADPVEDTASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHATKLMLQVHHE 61
Query 69 GKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
GKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR
Sbjct 62 GKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 94
>gi|120405250|ref|YP_955079.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
vanbaalenii PYR-1]
gi|119958068|gb|ABM15073.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
vanbaalenii PYR-1]
Length=100
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/99 (79%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 3 VVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLM 62
V A A+PGT R+ TD WVTIVWDDPVNLM+YVTYVFQKLFGYSEPHATKLM
Sbjct 2 VTPAKARPGTREDRDVREDATTDAPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHATKLM 61
Query 63 LQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
+QVHNEGKAVVSAGSRESMEVDV++LHAAGLWAT+QQDR
Sbjct 62 MQVHNEGKAVVSAGSRESMEVDVTRLHAAGLWATLQQDR 100
>gi|145222937|ref|YP_001133615.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
gilvum PYR-GCK]
gi|315443400|ref|YP_004076279.1| hypothetical protein Mspyr1_17820 [Mycobacterium sp. Spyr1]
gi|145215423|gb|ABP44827.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
gilvum PYR-GCK]
gi|315261703|gb|ADT98444.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=100
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/99 (77%), Positives = 82/99 (83%), Gaps = 0/99 (0%)
Query 3 VVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLM 62
V A A+PGT R+ D WVTIVWDDPVNLM+YVTYV QKLFGY+EPHATKLM
Sbjct 2 VTPAKARPGTREDRDVGEDAAADTPWVTIVWDDPVNLMTYVTYVLQKLFGYTEPHATKLM 61
Query 63 LQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
LQVHNEGKAVVSAGSRESME DVS+LHAAGLWAT+QQDR
Sbjct 62 LQVHNEGKAVVSAGSRESMETDVSRLHAAGLWATLQQDR 100
>gi|108800817|ref|YP_641014.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
sp. MCS]
gi|119869957|ref|YP_939909.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
sp. KMS]
gi|126436415|ref|YP_001072106.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
sp. JLS]
gi|108771236|gb|ABG09958.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
sp. MCS]
gi|119696046|gb|ABL93119.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
sp. KMS]
gi|126236215|gb|ABN99615.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
sp. JLS]
Length=88
Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/80 (93%), Positives = 76/80 (95%), Gaps = 0/80 (0%)
Query 22 DVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESM 81
+ TD WVTIVWDDPVNLM+YVTYV QKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESM
Sbjct 9 EATDAPWVTIVWDDPVNLMTYVTYVLQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESM 68
Query 82 EVDVSKLHAAGLWATMQQDR 101
EVDVSKLHAAGLWATMQQDR
Sbjct 69 EVDVSKLHAAGLWATMQQDR 88
>gi|289569343|ref|ZP_06449570.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T17]
gi|289543097|gb|EFD46745.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T17]
Length=73
Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK
Sbjct 1 MAVVSAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATK 60
Query 61 LMLQVHNEGKAVV 73
LMLQVHNEGKAVV
Sbjct 61 LMLQVHNEGKAVV 73
>gi|169628566|ref|YP_001702215.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
abscessus ATCC 19977]
gi|169240533|emb|CAM61561.1| Probable ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
abscessus]
Length=100
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/100 (74%), Positives = 83/100 (83%), Gaps = 2/100 (2%)
Query 4 VSAPAK--PGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKL 61
+ APA+ PGTT +R VD T WVTIVWDDPVNLM+YV YVFQ+LFGYSE AT L
Sbjct 1 MGAPARALPGTTAERSVEHVDETQSPWVTIVWDDPVNLMNYVAYVFQQLFGYSETEATNL 60
Query 62 MLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQDR 101
MLQVH+EGKAVVS G+RESME+DVSKLHAAGLWAT+QQDR
Sbjct 61 MLQVHHEGKAVVSCGARESMEIDVSKLHAAGLWATLQQDR 100
>gi|118619139|ref|YP_907471.1| hypothetical protein MUL_3931 [Mycobacterium ulcerans Agy99]
gi|118571249|gb|ABL06000.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=70
Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/70 (95%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 32 VWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVDVSKLHAA 91
+WDDPVNLM+YVTYVFQKLFGYSEPHATKLMLQVHNEG+AVVSAGSRE+MEVDVSKLHAA
Sbjct 1 MWDDPVNLMTYVTYVFQKLFGYSEPHATKLMLQVHNEGRAVVSAGSREAMEVDVSKLHAA 60
Query 92 GLWATMQQDR 101
GLWATMQQDR
Sbjct 61 GLWATMQQDR 70
>gi|226307371|ref|YP_002767331.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
erythropolis PR4]
gi|226186488|dbj|BAH34592.1| putative ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
erythropolis PR4]
Length=103
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/101 (67%), Positives = 79/101 (79%), Gaps = 1/101 (0%)
Query 1 MAVVSAPAKPGTTWQRES-APVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHAT 59
M +A + T Q E+ A ++ DR WVTIVWDDPVNLM YVTYVFQKLFGYS+ AT
Sbjct 1 MRGTTASSPQATPEQSEAVATIEAADRPWVTIVWDDPVNLMHYVTYVFQKLFGYSKAKAT 60
Query 60 KLMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQD 100
LM+QVH+EGKAVVS+GSR+ ME DV +LHAAGLWATMQ+D
Sbjct 61 DLMMQVHSEGKAVVSSGSRDKMEADVRRLHAAGLWATMQRD 101
>gi|229494029|ref|ZP_04387798.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
erythropolis SK121]
gi|229319098|gb|EEN84950.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
erythropolis SK121]
Length=162
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/80 (77%), Positives = 70/80 (88%), Gaps = 0/80 (0%)
Query 21 VDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRES 80
++ DR WVTIVWDDPVNLM YVTYVFQKLFGYS+ AT LM+QVH+EGKAVVS+GSR+
Sbjct 81 IEAADRPWVTIVWDDPVNLMHYVTYVFQKLFGYSKAKATDLMMQVHSEGKAVVSSGSRDK 140
Query 81 MEVDVSKLHAAGLWATMQQD 100
ME DV +LHAAGLWATMQ+D
Sbjct 141 MEADVRRLHAAGLWATMQRD 160
>gi|54023053|ref|YP_117295.1| ATP-dependent Clp protease adaptor protein ClpS [Nocardia farcinica
IFM 10152]
gi|67460226|sp|Q5Z0W0.1|CLPS_NOCFA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|54014561|dbj|BAD55931.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=106
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/80 (77%), Positives = 71/80 (89%), Gaps = 0/80 (0%)
Query 21 VDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRES 80
++ DR WVT+VWDDPVNLM YVTY+FQKLFGYS+ AT+LMLQVHNEGKAVVS+GSR+
Sbjct 26 LEAEDRPWVTVVWDDPVNLMHYVTYIFQKLFGYSKAKATELMLQVHNEGKAVVSSGSRDK 85
Query 81 MEVDVSKLHAAGLWATMQQD 100
ME DV +LHAAGLWATMQ+D
Sbjct 86 MEHDVRRLHAAGLWATMQRD 105
>gi|226360564|ref|YP_002778342.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
opacus B4]
gi|254763822|sp|C1AVW7.1|CLPS_RHOOB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|226239049|dbj|BAH49397.1| putative ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
opacus B4]
Length=112
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/97 (70%), Positives = 78/97 (81%), Gaps = 4/97 (4%)
Query 7 PAKPGTTWQRESAPVDV---TDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLML 63
PA P T ES V+V DR WVT+VWDDPVNLM YVTY+FQKLFGYS+ AT+LM+
Sbjct 15 PASPQVT-PAESEVVEVDEANDRPWVTVVWDDPVNLMHYVTYIFQKLFGYSKARATELMM 73
Query 64 QVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQD 100
QVH+EGKAVVS+GSR+ +E DV KLHAAGLWATMQ+D
Sbjct 74 QVHSEGKAVVSSGSRDKVENDVRKLHAAGLWATMQRD 110
>gi|111018445|ref|YP_701417.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
jostii RHA1]
gi|122956016|sp|Q0SGS7.1|CLPS_RHOSR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|110817975|gb|ABG93259.1| possible ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
jostii RHA1]
Length=112
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/97 (69%), Positives = 77/97 (80%), Gaps = 4/97 (4%)
Query 7 PAKPGTTWQRESAPVDV---TDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLML 63
PA P T ES V++ DR WVT+VWDDPVNLM YVTY+FQKLFGYS+ AT+LM+
Sbjct 15 PASPQVT-PAESEVVEIDEANDRPWVTVVWDDPVNLMHYVTYIFQKLFGYSKAKATELMM 73
Query 64 QVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQD 100
QVH+EGKAVVS+GSR+ +E DV KLHAAGLWATMQ D
Sbjct 74 QVHSEGKAVVSSGSRDKVENDVRKLHAAGLWATMQHD 110
>gi|312139203|ref|YP_004006539.1| ATP-dependent clp protease adaptor protein clps [Rhodococcus
equi 103S]
gi|325673491|ref|ZP_08153182.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
equi ATCC 33707]
gi|311888542|emb|CBH47854.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
equi 103S]
gi|325555512|gb|EGD25183.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
equi ATCC 33707]
Length=118
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 69/80 (87%), Gaps = 0/80 (0%)
Query 21 VDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRES 80
V+ DR WVT+VWDDPVNLM YVTY+FQKLFGYS+ AT LM+QVH EGKAVVS+GSR+
Sbjct 37 VEAQDRPWVTVVWDDPVNLMHYVTYIFQKLFGYSKAKATDLMMQVHKEGKAVVSSGSRDK 96
Query 81 MEVDVSKLHAAGLWATMQQD 100
+E DV KLHAAGLWATMQ+D
Sbjct 97 VENDVRKLHAAGLWATMQRD 116
>gi|343927063|ref|ZP_08766550.1| ATP-dependent Clp protease adapter protein ClpS [Gordonia alkanivorans
NBRC 16433]
gi|343763018|dbj|GAA13476.1| ATP-dependent Clp protease adapter protein ClpS [Gordonia alkanivorans
NBRC 16433]
Length=107
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/96 (66%), Positives = 74/96 (78%), Gaps = 3/96 (3%)
Query 8 AKPGTTWQRESAPVDVT---DRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQ 64
A PG T E A D D+ W+T+VWDDPVNLM YVT+VFQK+FGYSE HA +LM+Q
Sbjct 11 ATPGGTAVAEPAVADGAADLDKPWMTVVWDDPVNLMRYVTFVFQKIFGYSESHANQLMMQ 70
Query 65 VHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQD 100
VH EGKAVVS+G R+ +E DV KLHAAGLWATMQ+D
Sbjct 71 VHTEGKAVVSSGDRDKVEADVRKLHAAGLWATMQRD 106
>gi|302529732|ref|ZP_07282074.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. AA4]
gi|302438627|gb|EFL10443.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. AA4]
Length=102
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/76 (77%), Positives = 69/76 (91%), Gaps = 0/76 (0%)
Query 24 TDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEV 83
+D+ W TIVW+DPVNLMSYVTYVFQKLFGYS HATKLML VHN+G+A+VS+GS+E +E
Sbjct 25 SDQPWRTIVWNDPVNLMSYVTYVFQKLFGYSRDHATKLMLDVHNKGRAIVSSGSKEKVET 84
Query 84 DVSKLHAAGLWATMQQ 99
DV+KLHAAGLWATM+Q
Sbjct 85 DVAKLHAAGLWATMEQ 100
>gi|296393925|ref|YP_003658809.1| ATP-dependent Clp protease adaptor protein ClpS [Segniliparus
rotundus DSM 44985]
gi|296181072|gb|ADG97978.1| ATP-dependent Clp protease adaptor protein ClpS [Segniliparus
rotundus DSM 44985]
Length=104
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/77 (78%), Positives = 66/77 (86%), Gaps = 0/77 (0%)
Query 25 DRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVD 84
D WVTIVWDDPVNLM YVTYVFQ +FGYSE AT+LMLQVHN+GKAVVS+GSRE +E D
Sbjct 28 DLPWVTIVWDDPVNLMRYVTYVFQTVFGYSEAKATELMLQVHNDGKAVVSSGSREKVETD 87
Query 85 VSKLHAAGLWATMQQDR 101
V KLH AGLWATMQQ +
Sbjct 88 VVKLHQAGLWATMQQAK 104
>gi|300789536|ref|YP_003769827.1| ATP-dependent Clp protease adaptor protein ClpS [Amycolatopsis
mediterranei U32]
gi|299799050|gb|ADJ49425.1| ATP-dependent Clp protease adaptor protein ClpS [Amycolatopsis
mediterranei U32]
gi|340531192|gb|AEK46397.1| ATP-dependent Clp protease adaptor protein ClpS [Amycolatopsis
mediterranei S699]
Length=99
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/81 (73%), Positives = 69/81 (86%), Gaps = 0/81 (0%)
Query 19 APVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSR 78
A V +D W T+VW+DPVNLMSYVTYVFQKLFGYS HATKLML VH +GKA+VS+GS+
Sbjct 17 AEVAESDTPWRTVVWNDPVNLMSYVTYVFQKLFGYSRDHATKLMLDVHQKGKAIVSSGSK 76
Query 79 ESMEVDVSKLHAAGLWATMQQ 99
E +E DV+KLHAAGLWATM+Q
Sbjct 77 EKVETDVAKLHAAGLWATMEQ 97
>gi|262201899|ref|YP_003273107.1| ATP-dependent Clp protease adaptor protein ClpS [Gordonia bronchialis
DSM 43247]
gi|262085246|gb|ACY21214.1| ATP-dependent Clp protease adaptor protein ClpS [Gordonia bronchialis
DSM 43247]
Length=112
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 66/76 (87%), Gaps = 0/76 (0%)
Query 25 DRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVD 84
DR W+TIVWDDPVNLM YVT+VFQK+FGYSE A +LM+QVH EGKAVVS+G R+ +E D
Sbjct 36 DRPWMTIVWDDPVNLMRYVTFVFQKIFGYSESKANQLMMQVHTEGKAVVSSGDRDKVETD 95
Query 85 VSKLHAAGLWATMQQD 100
V KLHAAGLWATMQ+D
Sbjct 96 VRKLHAAGLWATMQRD 111
>gi|257056896|ref|YP_003134728.1| hypothetical protein Svir_29230 [Saccharomonospora viridis DSM
43017]
gi|256586768|gb|ACU97901.1| uncharacterized conserved protein [Saccharomonospora viridis
DSM 43017]
Length=94
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/82 (72%), Positives = 71/82 (87%), Gaps = 0/82 (0%)
Query 18 SAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGS 77
A V DR W TIVW+DPVNLMSYVTYVFQK+FGYS+ HATKLML VH++G+AVVS+G+
Sbjct 12 GADVGSEDRPWQTIVWNDPVNLMSYVTYVFQKIFGYSKEHATKLMLDVHHKGRAVVSSGT 71
Query 78 RESMEVDVSKLHAAGLWATMQQ 99
+E +E DV+KLHAAGLWATM+Q
Sbjct 72 KEKVEGDVAKLHAAGLWATMEQ 93
>gi|296139013|ref|YP_003646256.1| ATP-dependent Clp protease adaptor protein ClpS [Tsukamurella
paurometabola DSM 20162]
gi|296027147|gb|ADG77917.1| ATP-dependent Clp protease adaptor protein ClpS [Tsukamurella
paurometabola DSM 20162]
Length=109
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/102 (64%), Positives = 76/102 (75%), Gaps = 6/102 (5%)
Query 5 SAPAKPGTTWQRESAPV--DVTDRA----WVTIVWDDPVNLMSYVTYVFQKLFGYSEPHA 58
+AP PG + Q SA TDRA WVT+VWDDPVNLMSYVT+VF+K+FGYS A
Sbjct 7 AAPGSPGVSGQPGSAATLERETDRAIDKPWVTVVWDDPVNLMSYVTFVFRKVFGYSTSKA 66
Query 59 TKLMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQD 100
+LM+QVH EGKAVVS G R+ +E DV KLHAAGLWATMQ+D
Sbjct 67 KELMMQVHTEGKAVVSTGDRDKVEGDVRKLHAAGLWATMQRD 108
>gi|254819164|ref|ZP_05224165.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
intracellulare ATCC 13950]
Length=62
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/62 (96%), Positives = 61/62 (99%), Gaps = 0/62 (0%)
Query 40 MSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQ 99
M+YVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESME DVSKLHAAGLWAT+QQ
Sbjct 1 MTYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEADVSKLHAAGLWATLQQ 60
Query 100 DR 101
DR
Sbjct 61 DR 62
>gi|333921288|ref|YP_004494869.1| ATP-dependent Clp protease adapter protein ClpS [Amycolicicoccus
subflavus DQS3-9A1]
gi|333483509|gb|AEF42069.1| ATP-dependent Clp protease adapter protein ClpS [Amycolicicoccus
subflavus DQS3-9A1]
Length=102
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/79 (73%), Positives = 68/79 (87%), Gaps = 0/79 (0%)
Query 22 DVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESM 81
+ + R WVTIVWDDPVNLM YVTYV QK+FGYS AT+LML+VHN+GKAVVS+G+RE +
Sbjct 23 EASQRPWVTIVWDDPVNLMQYVTYVLQKIFGYSRQKATELMLKVHNDGKAVVSSGTREKV 82
Query 82 EVDVSKLHAAGLWATMQQD 100
E+DV KLHAAGLWATMQ +
Sbjct 83 EIDVRKLHAAGLWATMQHE 101
>gi|134097791|ref|YP_001103452.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharopolyspora
erythraea NRRL 2338]
gi|291005573|ref|ZP_06563546.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharopolyspora
erythraea NRRL 2338]
gi|133910414|emb|CAM00527.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharopolyspora
erythraea NRRL 2338]
Length=97
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/86 (67%), Positives = 72/86 (84%), Gaps = 0/86 (0%)
Query 15 QRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVS 74
Q + + D+ WVT+VW+DPVNLMSYVTYV QK+FGYS+ HATKLML VH++G+A VS
Sbjct 11 QLDPGELGTEDKPWVTVVWNDPVNLMSYVTYVLQKIFGYSKDHATKLMLDVHHKGRAAVS 70
Query 75 AGSRESMEVDVSKLHAAGLWATMQQD 100
+GS+E +E DV+KLHAAGLWATMQ+D
Sbjct 71 SGSKEKVEGDVAKLHAAGLWATMQKD 96
>gi|326385034|ref|ZP_08206706.1| ATP-dependent Clp protease adaptor protein ClpS [Gordonia neofelifaecis
NRRL B-59395]
gi|326196248|gb|EGD53450.1| ATP-dependent Clp protease adaptor protein ClpS [Gordonia neofelifaecis
NRRL B-59395]
Length=85
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/76 (77%), Positives = 63/76 (83%), Gaps = 0/76 (0%)
Query 25 DRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVD 84
DR WVT+VWDDPVNLM+YV YVFQK+FGYSE A LM+QVH EGKAVVS+G R ME D
Sbjct 9 DRPWVTLVWDDPVNLMNYVAYVFQKVFGYSEEKAKALMMQVHTEGKAVVSSGDRVKMEAD 68
Query 85 VSKLHAAGLWATMQQD 100
V KLHAAGLWATMQ D
Sbjct 69 VRKLHAAGLWATMQHD 84
>gi|86739577|ref|YP_479977.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp.
CcI3]
gi|86566439|gb|ABD10248.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp.
CcI3]
Length=119
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/76 (73%), Positives = 65/76 (86%), Gaps = 0/76 (0%)
Query 25 DRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVD 84
DR WVTIVW+DP+NLMSYVTYVFQKLFGYS+P ATKLML VH++G+A V+ G+RE ME D
Sbjct 44 DRPWVTIVWNDPINLMSYVTYVFQKLFGYSKPKATKLMLDVHHKGRASVAVGTREEMEAD 103
Query 85 VSKLHAAGLWATMQQD 100
+LHA GLWAT+ QD
Sbjct 104 AERLHAYGLWATIAQD 119
>gi|256375147|ref|YP_003098807.1| ATP-dependent Clp protease adaptor protein ClpS [Actinosynnema
mirum DSM 43827]
gi|255919450|gb|ACU34961.1| ATP-dependent Clp protease adaptor protein ClpS [Actinosynnema
mirum DSM 43827]
Length=99
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 69/75 (92%), Gaps = 0/75 (0%)
Query 25 DRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVD 84
D W+T+VW+DPVNLMSYVTYVFQK+FGYS+ HATKLM+ VH++G+AVVS+G+++ ME D
Sbjct 23 DSPWMTLVWNDPVNLMSYVTYVFQKVFGYSKDHATKLMMDVHHKGRAVVSSGAKDKMEAD 82
Query 85 VSKLHAAGLWATMQQ 99
V+KLHAAGLWATMQ+
Sbjct 83 VAKLHAAGLWATMQR 97
>gi|284989906|ref|YP_003408460.1| ATP-dependent Clp protease adaptor protein ClpS [Geodermatophilus
obscurus DSM 43160]
gi|284063151|gb|ADB74089.1| ATP-dependent Clp protease adaptor protein ClpS [Geodermatophilus
obscurus DSM 43160]
Length=98
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/76 (74%), Positives = 64/76 (85%), Gaps = 0/76 (0%)
Query 25 DRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVD 84
DR WVTIVW+DPVNLM+YVTYV Q+LFGY EP AT LMLQVH EGKA+VS+G RE ME D
Sbjct 22 DRPWVTIVWNDPVNLMTYVTYVLQELFGYDEPTATTLMLQVHEEGKAIVSSGPRERMEHD 81
Query 85 VSKLHAAGLWATMQQD 100
S+LHA GLWA+ Q+D
Sbjct 82 TSRLHAYGLWASYQRD 97
>gi|317508765|ref|ZP_07966415.1| ATP-dependent Clp protease adaptor protein ClpS [Segniliparus
rugosus ATCC BAA-974]
gi|316252928|gb|EFV12348.1| ATP-dependent Clp protease adaptor protein ClpS [Segniliparus
rugosus ATCC BAA-974]
Length=112
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/77 (75%), Positives = 65/77 (85%), Gaps = 0/77 (0%)
Query 25 DRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVD 84
D W+TIVWDDPVNLM YVTYVFQ +FGYSE AT+LML+VHN+GKAVVS+GSRE +E D
Sbjct 36 DLPWMTIVWDDPVNLMRYVTYVFQTVFGYSEAKATELMLRVHNDGKAVVSSGSREKVETD 95
Query 85 VSKLHAAGLWATMQQDR 101
V KL AGLWATMQQ +
Sbjct 96 VVKLQQAGLWATMQQGK 112
>gi|229821222|ref|YP_002882748.1| ATP-dependent Clp protease adaptor protein ClpS [Beutenbergia
cavernae DSM 12333]
gi|229567135|gb|ACQ80986.1| ATP-dependent Clp protease adaptor protein ClpS [Beutenbergia
cavernae DSM 12333]
Length=113
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/96 (61%), Positives = 67/96 (70%), Gaps = 0/96 (0%)
Query 5 SAPAKPGTTWQRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQ 64
++P P T +R DR W TIVW+DPVNLMSYVTYVFQ FGYS A KLM Q
Sbjct 16 TSPVSPTPTQERAGETAVRHDRPWHTIVWNDPVNLMSYVTYVFQTYFGYSRAKAEKLMRQ 75
Query 65 VHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQD 100
VH EGK++VS GSRE MEVDV +H+ GLWAT+ QD
Sbjct 76 VHTEGKSIVSHGSRERMEVDVQAMHSYGLWATLGQD 111
>gi|295836847|ref|ZP_06823780.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. SPB74]
gi|197699546|gb|EDY46479.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. SPB74]
Length=102
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/87 (66%), Positives = 68/87 (79%), Gaps = 0/87 (0%)
Query 15 QRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVS 74
+ ES+ V D W+T+V +DPVNLMSYVTYVFQ FGYS+ ATKLML VHN+G+AVVS
Sbjct 15 EAESSVVTEPDLLWITLVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHNKGRAVVS 74
Query 75 AGSRESMEVDVSKLHAAGLWATMQQDR 101
+GSRE ME DV +H GLWAT+QQDR
Sbjct 75 SGSREEMERDVQAMHGYGLWATLQQDR 101
>gi|296268919|ref|YP_003651551.1| ATP-dependent Clp protease adaptor protein ClpS [Thermobispora
bispora DSM 43833]
gi|296091706|gb|ADG87658.1| ATP-dependent Clp protease adaptor protein ClpS [Thermobispora
bispora DSM 43833]
Length=95
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/85 (68%), Positives = 69/85 (82%), Gaps = 1/85 (1%)
Query 16 RESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSA 75
RES+ V +DR W+TIVW+DPVNLMSYVTYVFQK+FGY P A KLM+ VH GKAVV++
Sbjct 11 RESSDVR-SDRPWLTIVWNDPVNLMSYVTYVFQKVFGYPRPKAEKLMMDVHCNGKAVVAS 69
Query 76 GSRESMEVDVSKLHAAGLWATMQQD 100
G+RE ME +V LH+ GLWAT+QQD
Sbjct 70 GTREEMERNVQILHSYGLWATVQQD 94
>gi|333024809|ref|ZP_08452873.1| putative ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. Tu6071]
gi|332744661|gb|EGJ75102.1| putative ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. Tu6071]
Length=127
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/85 (68%), Positives = 66/85 (78%), Gaps = 0/85 (0%)
Query 17 ESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAG 76
ES V D W+T+V +DPVNLMSYVTYVFQ FGYS+ ATKLML VHN+G+AVVS+G
Sbjct 42 ESFAVAEPDLPWITLVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHNKGRAVVSSG 101
Query 77 SRESMEVDVSKLHAAGLWATMQQDR 101
SRE ME DV +H GLWAT+QQDR
Sbjct 102 SREEMERDVQAMHGYGLWATLQQDR 126
>gi|336177275|ref|YP_004582650.1| ATP-dependent Clp protease adapter protein clpS [Frankia symbiont
of Datisca glomerata]
gi|334858255|gb|AEH08729.1| ATP-dependent Clp protease adapter protein clpS [Frankia symbiont
of Datisca glomerata]
Length=99
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/84 (67%), Positives = 65/84 (78%), Gaps = 0/84 (0%)
Query 17 ESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAG 76
ES V DR WVTIVW+DPVNLMSYVTYVFQKLFG+S A LML VH +G+A VS+G
Sbjct 16 ESDEVAERDRPWVTIVWNDPVNLMSYVTYVFQKLFGFSREKAKALMLDVHRKGRATVSSG 75
Query 77 SRESMEVDVSKLHAAGLWATMQQD 100
+RE ME D ++LHA GLWAT+ QD
Sbjct 76 TREEMERDATRLHAYGLWATIAQD 99
>gi|238063125|ref|ZP_04607834.1| ATP-dependent Clp protease adaptor protein clpS [Micromonospora
sp. ATCC 39149]
gi|237884936|gb|EEP73764.1| ATP-dependent Clp protease adaptor protein clpS [Micromonospora
sp. ATCC 39149]
Length=96
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/79 (71%), Positives = 67/79 (85%), Gaps = 0/79 (0%)
Query 21 VDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRES 80
V V+DR WVTIVWDDPVNLMSYVT+VFQKLFGYS A KLML VH++G+AVVS G+RE
Sbjct 17 VPVSDRPWVTIVWDDPVNLMSYVTWVFQKLFGYSRERAEKLMLDVHHKGRAVVSTGARER 76
Query 81 MEVDVSKLHAAGLWATMQQ 99
ME D ++LHA GLWAT+++
Sbjct 77 MEHDAAQLHAYGLWATVER 95
>gi|111220948|ref|YP_711742.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia alni
ACN14a]
gi|111148480|emb|CAJ60151.1| ATP-dependent Clp protease adaptor protein clpS [Frankia alni
ACN14a]
Length=91
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/90 (63%), Positives = 69/90 (77%), Gaps = 8/90 (8%)
Query 19 APVDVT--------DRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGK 70
+PVDV DR WVTIVW+DP+NLMSYVTYVFQKLFGY++ AT+LML VH++G+
Sbjct 2 SPVDVEEADETLDDDRPWVTIVWNDPINLMSYVTYVFQKLFGYTKSKATELMLDVHHKGR 61
Query 71 AVVSAGSRESMEVDVSKLHAAGLWATMQQD 100
A V+ G+RE ME D +LHA GLWAT+ QD
Sbjct 62 ASVATGTREEMEADAERLHAYGLWATIAQD 91
>gi|318057187|ref|ZP_07975910.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. SA3_actG]
gi|318079806|ref|ZP_07987138.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. SA3_actF]
Length=96
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/85 (68%), Positives = 66/85 (78%), Gaps = 0/85 (0%)
Query 17 ESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAG 76
ES V D W+T+V +DPVNLMSYVTYVFQ FGYS+ ATKLML VHN+G+AVVS+G
Sbjct 11 ESFAVAEPDLPWITLVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHNKGRAVVSSG 70
Query 77 SRESMEVDVSKLHAAGLWATMQQDR 101
SRE ME DV +H GLWAT+QQDR
Sbjct 71 SREEMERDVQAMHGYGLWATLQQDR 95
>gi|302521553|ref|ZP_07273895.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. SPB78]
gi|302430448|gb|EFL02264.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sp. SPB78]
Length=102
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/87 (66%), Positives = 67/87 (78%), Gaps = 0/87 (0%)
Query 15 QRESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVS 74
+ ES V D W+T+V +DPVNLMSYVTYVFQ FGYS+ ATKLML VHN+G+AVVS
Sbjct 15 EAESFAVAEPDLPWITLVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHNKGRAVVS 74
Query 75 AGSRESMEVDVSKLHAAGLWATMQQDR 101
+GSRE ME DV +H GLWAT+QQDR
Sbjct 75 SGSREEMERDVQAMHGYGLWATLQQDR 101
>gi|158317405|ref|YP_001509913.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp.
EAN1pec]
gi|158112810|gb|ABW15007.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp.
EAN1pec]
Length=122
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/84 (66%), Positives = 67/84 (80%), Gaps = 2/84 (2%)
Query 17 ESAPVDVTDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAG 76
E +P D DR WVTIVW+DP+NLMSYVTYVF+KLFGYSE ATKLML VH++G+A V++G
Sbjct 41 EDSPED--DRLWVTIVWNDPINLMSYVTYVFRKLFGYSERKATKLMLDVHHKGRATVASG 98
Query 77 SRESMEVDVSKLHAAGLWATMQQD 100
+RE ME +LH GLWAT+ QD
Sbjct 99 TREEMEAAAERLHTYGLWATIAQD 122
>gi|336324990|ref|YP_004604956.1| ATP-dependent Clp protease adaptor protein [Corynebacterium resistens
DSM 45100]
gi|336100972|gb|AEI08792.1| ATP-dependent Clp protease adaptor protein [Corynebacterium resistens
DSM 45100]
Length=101
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/98 (60%), Positives = 71/98 (73%), Gaps = 2/98 (2%)
Query 4 VSAPAKPGTTWQRESAPVDVTDR--AWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKL 61
+++PA P T +E P T+ W+ I WDDPVNLMSYVTYVFQ + GYS AT+L
Sbjct 1 MTSPAAPSATPVQERLPETDTEANLPWMCICWDDPVNLMSYVTYVFQTVLGYSRKRATEL 60
Query 62 MLQVHNEGKAVVSAGSRESMEVDVSKLHAAGLWATMQQ 99
M+QVHNEGKAVVS+G R+ +E DV KL AGLWATMQ+
Sbjct 61 MMQVHNEGKAVVSSGERDKVEADVKKLQTAGLWATMQR 98
Lambda K H
0.316 0.127 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128767090968
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40