BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1332
Length=218
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608472|ref|NP_215848.1| transcriptional regulatory protein ... 440 5e-122
gi|289446930|ref|ZP_06436674.1| transcriptional regulator [Mycob... 439 2e-121
gi|308373113|ref|ZP_07431054.2| transcriptional regulator [Mycob... 392 2e-107
gi|308399407|ref|ZP_07493009.2| transcriptional regulator [Mycob... 355 2e-96
gi|13638642|sp|P53424.2|Y1166_MYCLE RecName: Full=Uncharacterize... 339 2e-91
gi|466922|gb|AAA50897.1| B1549_C3_236 [Mycobacterium leprae] 338 3e-91
gi|118619138|ref|YP_907470.1| hypothetical protein MUL_3930 [Myc... 322 2e-86
gi|240169485|ref|ZP_04748144.1| hypothetical protein MkanA1_0924... 320 1e-85
gi|118464515|ref|YP_880787.1| hypothetical protein MAV_1552 [Myc... 318 3e-85
gi|41408526|ref|NP_961362.1| hypothetical protein MAP2428c [Myco... 314 5e-84
gi|342858008|ref|ZP_08714664.1| hypothetical protein MCOL_04000 ... 306 1e-81
gi|254819165|ref|ZP_05224166.1| hypothetical protein MintA_04524... 306 1e-81
gi|15827588|ref|NP_301851.1| hypothetical protein ML1166 [Mycoba... 296 1e-78
gi|296170274|ref|ZP_06851865.1| conserved hypothetical protein [... 286 2e-75
gi|118473307|ref|YP_889164.1| hypothetical protein MSMEG_4909 [M... 269 2e-70
gi|108800816|ref|YP_641013.1| hypothetical protein Mmcs_3852 [My... 246 2e-63
gi|333989978|ref|YP_004522592.1| transcriptional regulator [Myco... 244 9e-63
gi|145222938|ref|YP_001133616.1| hypothetical protein Mflv_2350 ... 242 3e-62
gi|120405249|ref|YP_955078.1| hypothetical protein Mvan_4295 [My... 241 4e-62
gi|169628567|ref|YP_001702216.1| hypothetical protein MAB_1476 [... 227 7e-58
gi|226875161|gb|ACO88929.1| Rv1332-like protein [Mycobacterium a... 197 1e-48
gi|262201900|ref|YP_003273108.1| hypothetical protein Gbro_1961 ... 192 4e-47
gi|343927062|ref|ZP_08766549.1| hypothetical protein GOALK_078_0... 188 5e-46
gi|229493994|ref|ZP_04387763.1| hypothetical protein RHOER0001_5... 179 2e-43
gi|226307370|ref|YP_002767330.1| hypothetical protein RER_38830 ... 179 3e-43
gi|226360563|ref|YP_002778341.1| hypothetical protein ROP_11490 ... 171 7e-41
gi|111018444|ref|YP_701416.1| hypothetical protein RHA1_ro01440 ... 171 9e-41
gi|317508766|ref|ZP_07966416.1| hypothetical protein HMPREF9336_... 170 1e-40
gi|326385033|ref|ZP_08206705.1| hypothetical protein SCNU_18918 ... 166 2e-39
gi|312139204|ref|YP_004006540.1| hypothetical protein REQ_17860 ... 166 2e-39
gi|296393926|ref|YP_003658810.1| hypothetical protein Srot_1516 ... 166 3e-39
gi|54023054|ref|YP_117296.1| hypothetical protein nfa10870 [Noca... 165 3e-39
gi|325673490|ref|ZP_08153181.1| hypothetical protein HMPREF0724_... 165 4e-39
gi|302529731|ref|ZP_07282073.1| transcriptional regulatory prote... 155 3e-36
gi|325002221|ref|ZP_08123333.1| hypothetical protein PseP1_25816... 155 4e-36
gi|300789535|ref|YP_003769826.1| hypothetical protein AMED_7716 ... 153 2e-35
gi|296139014|ref|YP_003646257.1| hypothetical protein Tpau_1288 ... 152 4e-35
gi|333921287|ref|YP_004494868.1| hypothetical protein AS9A_3630 ... 150 2e-34
gi|319948541|ref|ZP_08022672.1| hypothetical protein ES5_04176 [... 148 5e-34
gi|331695360|ref|YP_004331599.1| hypothetical protein Psed_1507 ... 147 7e-34
gi|257056895|ref|YP_003134727.1| hypothetical protein Svir_29220... 145 3e-33
gi|256375148|ref|YP_003098808.1| hypothetical protein Amir_1006 ... 142 5e-32
gi|134097792|ref|YP_001103453.1| transcriptional regulatory prot... 135 3e-30
gi|213965909|ref|ZP_03394100.1| conserved hypothetical protein [... 117 8e-25
gi|258651918|ref|YP_003201074.1| hypothetical protein Namu_1695 ... 116 3e-24
gi|227488217|ref|ZP_03918533.1| conserved hypothetical protein [... 99.0 5e-19
gi|337291441|ref|YP_004630462.1| hypothetical protein CULC22_018... 98.6 6e-19
gi|305681152|ref|ZP_07403959.1| conserved hypothetical protein [... 97.1 1e-18
gi|38234426|ref|NP_940193.1| hypothetical protein DIP1856 [Coryn... 96.7 2e-18
gi|25028965|ref|NP_739019.1| hypothetical protein CE2409 [Coryne... 96.3 3e-18
>gi|15608472|ref|NP_215848.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15840787|ref|NP_335824.1| hypothetical protein MT1374 [Mycobacterium tuberculosis CDC1551]
gi|31792528|ref|NP_855021.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
71 more sequence titles
Length=218
Score = 440 bits (1132), Expect = 5e-122, Method: Compositional matrix adjust.
Identities = 218/218 (100%), Positives = 218/218 (100%), Gaps = 0/218 (0%)
Query 1 MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLL 60
MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLL
Sbjct 1 MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLL 60
Query 61 DDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNA 120
DDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNA
Sbjct 61 DDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNA 120
Query 121 ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIG 180
ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIG
Sbjct 121 ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIG 180
Query 181 PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR 218
PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR
Sbjct 181 PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR 218
>gi|289446930|ref|ZP_06436674.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289419888|gb|EFD17089.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
Length=218
Score = 439 bits (1128), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 217/218 (99%), Positives = 218/218 (100%), Gaps = 0/218 (0%)
Query 1 MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLL 60
MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLL
Sbjct 1 MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLL 60
Query 61 DDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNA 120
DDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNA
Sbjct 61 DDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNA 120
Query 121 ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIG 180
ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALG+MLEIG
Sbjct 121 ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGLMLEIG 180
Query 181 PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR 218
PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR
Sbjct 181 PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR 218
>gi|308373113|ref|ZP_07431054.2| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|308338778|gb|EFP27629.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|323720149|gb|EGB29252.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
gi|339294313|gb|AEJ46424.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CCDC5079]
gi|339297952|gb|AEJ50062.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CCDC5180]
Length=196
Score = 392 bits (1007), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 195/196 (99%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+RRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH
Sbjct 1 MRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL
Sbjct 61 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 120
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW
Sbjct 121 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 180
Query 203 LTVLQEYLVLVLMGSR 218
LTVLQEYLVLVLMGSR
Sbjct 181 LTVLQEYLVLVLMGSR 196
>gi|308399407|ref|ZP_07493009.2| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
gi|308366430|gb|EFP55281.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
Length=178
Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 177/178 (99%), Positives = 178/178 (100%), Gaps = 0/178 (0%)
Query 41 LAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYR 100
+APHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYR
Sbjct 1 MAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYR 60
Query 101 PDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDAN 160
PDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDAN
Sbjct 61 PDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDAN 120
Query 161 AWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR 218
AWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR
Sbjct 121 AWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR 178
>gi|13638642|sp|P53424.2|Y1166_MYCLE RecName: Full=Uncharacterized protein ML1166
Length=217
Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/217 (76%), Positives = 186/217 (86%), Gaps = 0/217 (0%)
Query 1 MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLL 60
MPPVCGRRCSRTGE+R Y GS VR+WKRVET +GPRFRS +APHE ALLK+L GA++GLL
Sbjct 1 MPPVCGRRCSRTGEVRRYPGSFVRKWKRVETANGPRFRSVVAPHEVALLKHLVGALLGLL 60
Query 61 DDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNA 120
++R+SSSP DELE ITGIK G+AQRP DPTLRRLLPDFY PDD D DP A+D +S NA
Sbjct 61 NERESSSPLDELEVITGIKAGNAQRPEDPTLRRLLPDFYTPDDKDQLDPAALDAVDSLNA 120
Query 121 ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIG 180
ALRSLHEPEI+DAKR AAQQLLDT+P++ GRLELTE+ ANAWIAAVNDLRLALGV+LEI
Sbjct 121 ALRSLHEPEIVDAKRSAAQQLLDTLPESDGRLELTEASANAWIAAVNDLRLALGVILEID 180
Query 181 PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGS 217
PER+P HPL+ HF+VYQWLTVLQEYLVL LM +
Sbjct 181 RPAPERVPAGHPLSVHFDVYQWLTVLQEYLVLALMAT 217
>gi|466922|gb|AAA50897.1| B1549_C3_236 [Mycobacterium leprae]
Length=222
Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/217 (76%), Positives = 186/217 (86%), Gaps = 0/217 (0%)
Query 1 MPPVCGRRCSRTGEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLL 60
MPPVCGRRCSRTGE+R Y GS VR+WKRVET +GPRFRS +APHE ALLK+L GA++GLL
Sbjct 6 MPPVCGRRCSRTGEVRRYPGSFVRKWKRVETANGPRFRSVVAPHEVALLKHLVGALLGLL 65
Query 61 DDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNA 120
++R+SSSP DELE ITGIK G+AQRP DPTLRRLLPDFY PDD D DP A+D +S NA
Sbjct 66 NERESSSPLDELEVITGIKAGNAQRPEDPTLRRLLPDFYTPDDKDQLDPAALDAVDSLNA 125
Query 121 ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIG 180
ALRSLHEPEI+DAKR AAQQLLDT+P++ GRLELTE+ ANAWIAAVNDLRLALGV+LEI
Sbjct 126 ALRSLHEPEIVDAKRSAAQQLLDTLPESDGRLELTEASANAWIAAVNDLRLALGVILEID 185
Query 181 PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGS 217
PER+P HPL+ HF+VYQWLTVLQEYLVL LM +
Sbjct 186 RPAPERVPAGHPLSVHFDVYQWLTVLQEYLVLALMAT 222
>gi|118619138|ref|YP_907470.1| hypothetical protein MUL_3930 [Mycobacterium ulcerans Agy99]
gi|183984037|ref|YP_001852328.1| hypothetical protein MMAR_4066 [Mycobacterium marinum M]
gi|118571248|gb|ABL05999.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183177363|gb|ACC42473.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=195
Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/195 (79%), Positives = 175/195 (90%), Gaps = 3/195 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVETR+GPRFRSSLAPHEA LLKNL GAMIGLLD+R+S++PSDELEEITGI+TGH
Sbjct 1 MRKWKRVETRNGPRFRSSLAPHEATLLKNLVGAMIGLLDERESTAPSDELEEITGIRTGH 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
AQRPGDPTLRRLLPDFY+P + DP +D SE+ NAALRSLHEP+IIDAKR AQQLL
Sbjct 61 AQRPGDPTLRRLLPDFYKPGE---TDPMTLDSSETLNAALRSLHEPDIIDAKRATAQQLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DTVP+ GGR ELTE ANAW+AAVNDLRL LGV+L++GPRGPERLP +HPLAAH++VYQW
Sbjct 118 DTVPEKGGRFELTEDGANAWVAAVNDLRLTLGVLLDVGPRGPERLPADHPLAAHYDVYQW 177
Query 203 LTVLQEYLVLVLMGS 217
LTVLQEYLVLVLMG
Sbjct 178 LTVLQEYLVLVLMGK 192
>gi|240169485|ref|ZP_04748144.1| hypothetical protein MkanA1_09241 [Mycobacterium kansasii ATCC
12478]
Length=195
Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/195 (78%), Positives = 175/195 (90%), Gaps = 3/195 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVETR+GPRFRS+LAPHEAALLKNL GAM+GL D+R+S++P+DELEEITGIKTGH
Sbjct 1 MRKWKRVETRNGPRFRSALAPHEAALLKNLVGAMVGLFDERESTTPTDELEEITGIKTGH 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
+ RPGDPTLRRLLPDFY+ LD DP +D SE+ NAALRSLHEP IIDAKR AAQQLL
Sbjct 61 SDRPGDPTLRRLLPDFYK---LDPGDPMTLDASETLNAALRSLHEPAIIDAKRGAAQQLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
TVP+NGGR ELTESDANAW+AAVNDLRL LGV+L +GP+GPERLP +HP+AAH++VYQW
Sbjct 118 QTVPENGGRFELTESDANAWVAAVNDLRLTLGVLLNVGPQGPERLPADHPMAAHYDVYQW 177
Query 203 LTVLQEYLVLVLMGS 217
LTVLQEYLVLVLMG
Sbjct 178 LTVLQEYLVLVLMGK 192
>gi|118464515|ref|YP_880787.1| hypothetical protein MAV_1552 [Mycobacterium avium 104]
gi|254774372|ref|ZP_05215888.1| hypothetical protein MaviaA2_06845 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118165802|gb|ABK66699.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=195
Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 159/196 (82%), Positives = 175/196 (90%), Gaps = 3/196 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVET DGPRFRS+LA HEAALLKNLA AMIGLLD+R+SSSP+DELEEITGIKTG+
Sbjct 1 MRKWKRVETADGPRFRSALASHEAALLKNLATAMIGLLDERESSSPADELEEITGIKTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
AQ P DPTLRRLLPDFYRPDD D+ P D +ES NAALRSLHEP I++AKRVAAQ+LL
Sbjct 61 AQPPKDPTLRRLLPDFYRPDDNGDESP---DAAESLNAALRSLHEPGIVNAKRVAAQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DTVPD+GGR ELTE DANAWIAAVND+RL LGVMLEIGP GPERLP +HPLA HF+VYQW
Sbjct 118 DTVPDDGGRFELTEDDANAWIAAVNDIRLTLGVMLEIGPDGPERLPADHPLAVHFDVYQW 177
Query 203 LTVLQEYLVLVLMGSR 218
LTVLQEYLVLVLMG R
Sbjct 178 LTVLQEYLVLVLMGPR 193
>gi|41408526|ref|NP_961362.1| hypothetical protein MAP2428c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396882|gb|AAS04745.1| hypothetical protein MAP_2428c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460961|gb|EGO39842.1| protein of unknown function (DUF2017) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=195
Score = 314 bits (805), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 157/196 (81%), Positives = 174/196 (89%), Gaps = 3/196 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVET +GPRFRS+LA HEAALLKNLA AMIGLLD+R+SSSP+DELEEITGIKTG+
Sbjct 1 MRKWKRVETAEGPRFRSALASHEAALLKNLATAMIGLLDERESSSPADELEEITGIKTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
AQ P DPTLRRLLPDFYRPDD D+ P D +ES NAALRSLHEP I++AKRVAAQ+LL
Sbjct 61 AQPPKDPTLRRLLPDFYRPDDNGDESP---DAAESLNAALRSLHEPGIVNAKRVAAQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
TVPD+GGR ELTE DANAWIAAVND+RL LGVMLEIGP GPERLP +HPLA HF+VYQW
Sbjct 118 GTVPDDGGRFELTEDDANAWIAAVNDIRLTLGVMLEIGPDGPERLPADHPLAVHFDVYQW 177
Query 203 LTVLQEYLVLVLMGSR 218
LTVLQEYLVLVLMG R
Sbjct 178 LTVLQEYLVLVLMGPR 193
>gi|342858008|ref|ZP_08714664.1| hypothetical protein MCOL_04000 [Mycobacterium colombiense CECT
3035]
gi|342135341|gb|EGT88507.1| hypothetical protein MCOL_04000 [Mycobacterium colombiense CECT
3035]
Length=195
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/196 (78%), Positives = 172/196 (88%), Gaps = 3/196 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVET GPRFRSSLA HEAALLKNLA AMIGLLD+R+SSSP+DELEEITGIKTG+
Sbjct 1 MRKWKRVETASGPRFRSSLASHEAALLKNLATAMIGLLDERESSSPADELEEITGIKTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
A+ P DPTLRRLLPDFYR DD D P D ++S NAALRSLHEP+I+DAKRVAAQ+LL
Sbjct 61 AEPPKDPTLRRLLPDFYRHDDEDTAPP---DDADSLNAALRSLHEPDIVDAKRVAAQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
T+PD+GGR ELTE DAN+W+AAVND+RL LGVMLE+GP GPERLP +HPLA HF+VYQW
Sbjct 118 STIPDDGGRFELTEDDANSWVAAVNDIRLTLGVMLEVGPDGPERLPADHPLAVHFDVYQW 177
Query 203 LTVLQEYLVLVLMGSR 218
LTVLQEYLVLVLMG R
Sbjct 178 LTVLQEYLVLVLMGPR 193
>gi|254819165|ref|ZP_05224166.1| hypothetical protein MintA_04524 [Mycobacterium intracellulare
ATCC 13950]
Length=193
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/196 (78%), Positives = 170/196 (87%), Gaps = 3/196 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVET DGPRFRS+LA HEAALLKNLA AMIGLLD+R+SSSP+DELEEITGIKTG+
Sbjct 1 MRKWKRVETADGPRFRSALASHEAALLKNLATAMIGLLDERESSSPADELEEITGIKTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
A+ P DPTLRRLLPDFYR DD D D ++S NAALRSLHEP I+DAKRVAAQ+LL
Sbjct 61 AEPPKDPTLRRLLPDFYRNDD---QDTAPADSADSLNAALRSLHEPGIVDAKRVAAQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
TVP++GGR EL+E DAN WI AVND+RL LGVMLE+GP GPERLP +HPLA HF+VYQW
Sbjct 118 STVPEDGGRFELSEEDANCWIGAVNDIRLTLGVMLEVGPEGPERLPADHPLAVHFDVYQW 177
Query 203 LTVLQEYLVLVLMGSR 218
LTVLQEYLVLVLMGSR
Sbjct 178 LTVLQEYLVLVLMGSR 193
>gi|15827588|ref|NP_301851.1| hypothetical protein ML1166 [Mycobacterium leprae TN]
gi|221230065|ref|YP_002503481.1| hypothetical protein MLBr_01166 [Mycobacterium leprae Br4923]
gi|13093139|emb|CAC31547.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933172|emb|CAR71261.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=195
Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/195 (74%), Positives = 167/195 (86%), Gaps = 0/195 (0%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVET +GPRFRS +APHE ALLK+L GA++GLL++R+SSSP DELE ITGIK G+
Sbjct 1 MRKWKRVETANGPRFRSVVAPHEVALLKHLVGALLGLLNERESSSPLDELEVITGIKAGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
AQRP DPTLRRLLPDFY PDD D DP A+D +S NAALRSLHEPEI+DAKR AAQQLL
Sbjct 61 AQRPEDPTLRRLLPDFYTPDDKDQLDPAALDAVDSLNAALRSLHEPEIVDAKRSAAQQLL 120
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DT+P++ GRLELTE+ ANAWIAAVNDLRLALGV+LEI PER+P HPL+ HF+VYQW
Sbjct 121 DTLPESDGRLELTEASANAWIAAVNDLRLALGVILEIDRPAPERVPAGHPLSVHFDVYQW 180
Query 203 LTVLQEYLVLVLMGS 217
LTVLQEYLVL LM +
Sbjct 181 LTVLQEYLVLALMAT 195
>gi|296170274|ref|ZP_06851865.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894997|gb|EFG74716.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=193
Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 150/196 (77%), Positives = 171/196 (88%), Gaps = 3/196 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVET DGPRFRS+LA HEAALLKNLA AM+GLLD+R+SSSP+DELEEITGIKTG+
Sbjct 1 MRKWKRVETADGPRFRSALAAHEAALLKNLATAMVGLLDERESSSPADELEEITGIKTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
+ P DPTLRRLLPDF PDD DD D ++S NAALRSLHEPEIIDAKR+AAQ+LL
Sbjct 61 SDAPRDPTLRRLLPDFVHPDD---DDSAGSDVADSLNAALRSLHEPEIIDAKRLAAQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
+TVPD+GGR +L E DANAW+AAVND+RL LGVMLE+GP GPERLP +HPLA HF+VYQW
Sbjct 118 NTVPDDGGRFDLNEDDANAWVAAVNDIRLTLGVMLEVGPEGPERLPDDHPLAMHFDVYQW 177
Query 203 LTVLQEYLVLVLMGSR 218
LTVLQEYLVLVLMG R
Sbjct 178 LTVLQEYLVLVLMGPR 193
>gi|118473307|ref|YP_889164.1| hypothetical protein MSMEG_4909 [Mycobacterium smegmatis str.
MC2 155]
gi|118174594|gb|ABK75490.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=192
Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/195 (67%), Positives = 159/195 (82%), Gaps = 3/195 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVE DGPRFRS+L HEAALL +L G+M+G+LD+R+SS+P+DELE ITGIKTGH
Sbjct 1 MRKWKRVEAADGPRFRSALEGHEAALLSSLVGSMLGMLDERESSAPADELEAITGIKTGH 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
++ P D T++RLLPDF+RP D P +ES N+ALR LHEP+IIDAKR AAQ+LL
Sbjct 61 SRPPEDATMKRLLPDFFRPQT---DHPAGSGTAESLNSALRGLHEPQIIDAKRQAAQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DT+PD GG+ ELTE DA+AW AAVND+RLALG +LEIGP GP+RLP HP+A H +VYQW
Sbjct 118 DTMPDGGGKFELTEDDAHAWAAAVNDVRLALGTLLEIGPDGPDRLPPEHPMAGHLDVYQW 177
Query 203 LTVLQEYLVLVLMGS 217
LTVLQEYLVL L+G
Sbjct 178 LTVLQEYLVLELVGK 192
>gi|108800816|ref|YP_641013.1| hypothetical protein Mmcs_3852 [Mycobacterium sp. MCS]
gi|119869956|ref|YP_939908.1| hypothetical protein Mkms_3926 [Mycobacterium sp. KMS]
gi|126436414|ref|YP_001072105.1| hypothetical protein Mjls_3838 [Mycobacterium sp. JLS]
gi|108771235|gb|ABG09957.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119696045|gb|ABL93118.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126236214|gb|ABN99614.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=195
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/194 (63%), Positives = 152/194 (79%), Gaps = 3/194 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRV+T DG RFRS+L PHEAALL++L ++ G+LD+R+SS+P+DELEEITG++TGH
Sbjct 1 MRKWKRVQTADGARFRSALEPHEAALLQSLVSSVKGMLDERESSAPADELEEITGMRTGH 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
P D T++RLLPDF+R D P +ES N+ALRSLHEPEI+ KR AAQ+LL
Sbjct 61 NAPPQDATMKRLLPDFFRAAT---DHPAGSGTAESLNSALRSLHEPEILAVKRDAAQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DT+P GGR ELTE DA+AW AAVND+RLALG ML+I G + LP +HP+A H +VYQW
Sbjct 118 DTLPAGGGRFELTEDDAHAWAAAVNDVRLALGTMLDIDAMGSDELPPDHPMAGHVDVYQW 177
Query 203 LTVLQEYLVLVLMG 216
LTVLQEYLVL L+G
Sbjct 178 LTVLQEYLVLSLVG 191
>gi|333989978|ref|YP_004522592.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333485946|gb|AEF35338.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=198
Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 131/194 (68%), Positives = 153/194 (79%), Gaps = 0/194 (0%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+ +WKRVET GPRFRS+LA HEAALL+NL G++IG+L+ R+S+SP DELE+ITG+KTG+
Sbjct 1 MHKWKRVETDGGPRFRSALALHEAALLRNLVGSIIGMLEARESASPPDELEQITGMKTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
Q P D T RRLLPDFYR D + +E NAALRSLHEPEIIDAKR AAQQ+L
Sbjct 61 TQPPEDATTRRLLPDFYRADGGGAAADGSALDAEGLNAALRSLHEPEIIDAKRGAAQQVL 120
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DT+P+ GGR ELTE ANAWIAAVND+RLALG ML+IGP GP+RLP P A NVYQW
Sbjct 121 DTLPERGGRFELTEEQANAWIAAVNDIRLALGTMLQIGPNGPDRLPPGDPRAGQLNVYQW 180
Query 203 LTVLQEYLVLVLMG 216
LTVLQEYLV+ LMG
Sbjct 181 LTVLQEYLVVALMG 194
>gi|145222938|ref|YP_001133616.1| hypothetical protein Mflv_2350 [Mycobacterium gilvum PYR-GCK]
gi|315443401|ref|YP_004076280.1| hypothetical protein Mspyr1_17830 [Mycobacterium sp. Spyr1]
gi|145215424|gb|ABP44828.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315261704|gb|ADT98445.1| protein of unknown function (DUF2017) [Mycobacterium sp. Spyr1]
Length=194
Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/194 (62%), Positives = 155/194 (80%), Gaps = 3/194 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVE GPRFRS+LA HE LL +L +++G+LDDR++S+P DEL EITG++TG+
Sbjct 1 MRKWKRVEGPSGPRFRSALAAHEVELLSSLVTSLLGMLDDREASAPRDELAEITGMRTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
+ P D T++RLLPDFYRP + P +ES N+ALRSLHEPEI+DAKR AAQ+LL
Sbjct 61 SVAPQDDTMKRLLPDFYRPAT---EHPAGSSAAESLNSALRSLHEPEILDAKREAAQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DT+P GG+ EL+E DA+AW +AVND+RLALG ML+IG GP+RLPG+HP++ H +VYQW
Sbjct 118 DTLPAAGGKFELSEQDAHAWASAVNDVRLALGTMLDIGADGPDRLPGDHPMSGHLDVYQW 177
Query 203 LTVLQEYLVLVLMG 216
LTVLQEYLV+ LMG
Sbjct 178 LTVLQEYLVVSLMG 191
>gi|120405249|ref|YP_955078.1| hypothetical protein Mvan_4295 [Mycobacterium vanbaalenii PYR-1]
gi|119958067|gb|ABM15072.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=194
Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/195 (63%), Positives = 155/195 (80%), Gaps = 3/195 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRVE GPRFRS+LA HEA LL +L +++G+LDDR++S+P DEL EITG++TG+
Sbjct 1 MRKWKRVEGAGGPRFRSALAAHEAELLSSLVTSLLGMLDDREASAPVDELAEITGMRTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
+ P D TL+RLLPDFYRP + P +ES N+ALRSLHEP I+DAKR AAQ+LL
Sbjct 61 SVPPQDDTLKRLLPDFYRPAT---EHPAGSGTAESLNSALRSLHEPAILDAKREAAQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DTVP GG+ EL+E DA+AW AAVND+RLALG ML++G GP+ LPG+HP+A H +VYQW
Sbjct 118 DTVPAGGGKFELSEDDAHAWAAAVNDVRLALGTMLDVGSDGPDHLPGDHPMAGHLDVYQW 177
Query 203 LTVLQEYLVLVLMGS 217
LTVLQEYLV+ LMG+
Sbjct 178 LTVLQEYLVVCLMGN 192
>gi|169628567|ref|YP_001702216.1| hypothetical protein MAB_1476 [Mycobacterium abscessus ATCC 19977]
gi|169240534|emb|CAM61562.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=195
Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/194 (56%), Positives = 146/194 (76%), Gaps = 3/194 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R+WKRV DG R RS + PHEAAL++++ +M+ +LD+R+SS+PSDEL ++TGI+TG+
Sbjct 1 MRKWKRVNASDGIRLRSEMEPHEAALVQSMVTSMLAMLDERESSAPSDELAQLTGIRTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
+ P D TL RLLPDF+RPD D ++++ N+ALRSL+EPEIIDAKR A Q+LL
Sbjct 61 TEAPTDVTLGRLLPDFHRPDQ---DGTSSIEAVSGLNSALRSLYEPEIIDAKREAGQRLL 117
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
T+P +GGR EL+E+DA AW+ A+ND+RLALG ML I GP+ L + P+A H ++Y W
Sbjct 118 RTLPADGGRFELSETDAQAWLTALNDVRLALGAMLGIDSEGPQELAVDDPMAGHMDIYHW 177
Query 203 LTVLQEYLVLVLMG 216
LTV+QE LVL LMG
Sbjct 178 LTVMQELLVLALMG 191
>gi|226875161|gb|ACO88929.1| Rv1332-like protein [Mycobacterium africanum]
Length=98
Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/98 (99%), Positives = 98/98 (100%), Gaps = 0/98 (0%)
Query 121 ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIG 180
ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALG+MLEIG
Sbjct 1 ALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGLMLEIG 60
Query 181 PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR 218
PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR
Sbjct 61 PRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMGSR 98
>gi|262201900|ref|YP_003273108.1| hypothetical protein Gbro_1961 [Gordonia bronchialis DSM 43247]
gi|262085247|gb|ACY21215.1| Domain of unknown function DUF2017 [Gordonia bronchialis DSM
43247]
Length=194
Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/196 (52%), Positives = 132/196 (68%), Gaps = 2/196 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R WKR G R S L PHEA LL ++ +M LL +R+ S+P D+L ++TGI+ GH
Sbjct 1 MRTWKRKGRGAGVRICSQLDPHEAELLASMVTSMCELLTEREQSAPRDDLADLTGIRVGH 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
+ P D TL RLLPDF+RPD + V+G NAALRS++EP+IIDAK AAQ +L
Sbjct 61 VEAPRDATLGRLLPDFHRPDQDRELSADVVNGK--LNAALRSVNEPKIIDAKLAAAQVVL 118
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DT+P GG + LTE A W++A+ND+RLALG ML I P++LP +HP AAH +VY W
Sbjct 119 DTLPSGGGDIALTEDQAAGWLSALNDVRLALGAMLGISEDTPDQLPPDHPHAAHLDVYHW 178
Query 203 LTVLQEYLVLVLMGSR 218
LTV+Q+ LV LM SR
Sbjct 179 LTVMQDLLVETLMTSR 194
>gi|343927062|ref|ZP_08766549.1| hypothetical protein GOALK_078_00080 [Gordonia alkanivorans NBRC
16433]
gi|343763017|dbj|GAA13475.1| hypothetical protein GOALK_078_00080 [Gordonia alkanivorans NBRC
16433]
Length=191
Score = 188 bits (477), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/193 (52%), Positives = 129/193 (67%), Gaps = 2/193 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R WKR + R S L HEA LL +L +M LL +R ++PSD L E+TGI+ GH
Sbjct 1 MRTWKRKGRGESIRITSQLDSHEAELLASLVSSMCELLAERADTAPSDALSEVTGIRIGH 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
+ P D TL RLLPDF+RPD ++ V+G N+ALRS++EP+II+AK AA LL
Sbjct 61 SDAPDDATLGRLLPDFHRPDQDEELSAEVVNGR--LNSALRSVNEPKIINAKLAAAHTLL 118
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DT+PD GG L LT +A AW+ A+ND+RLALG ML I P+RLP +HP AAH +VY W
Sbjct 119 DTLPDGGGDLALTVDEATAWLTALNDVRLALGAMLGISEDTPDRLPPDHPHAAHLDVYHW 178
Query 203 LTVLQEYLVLVLM 215
LTV+Q+ LV +M
Sbjct 179 LTVMQDLLVEAVM 191
>gi|229493994|ref|ZP_04387763.1| hypothetical protein RHOER0001_5401 [Rhodococcus erythropolis
SK121]
gi|229319063|gb|EEN84915.1| hypothetical protein RHOER0001_5401 [Rhodococcus erythropolis
SK121]
Length=196
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/195 (48%), Positives = 132/195 (68%), Gaps = 2/195 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R W R + G +F+S + HEAA+L++L ++ GLLD+R SS+P DEL +TG++TG+
Sbjct 1 MRTWSRKSSLGGVKFKSEMDGHEAAVLRSLVESVTGLLDERASSAPQDELAALTGLRTGN 60
Query 83 AQRPGDPTLRRLLPDFYR--PDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQ 140
++ P +P L RLLPDF R PD + D D + N ALRSLHEPEIIDAKR +A+
Sbjct 61 SETPDNPVLARLLPDFQRTDPDKVAPDSDDLDDAGANVNGALRSLHEPEIIDAKRESARM 120
Query 141 LLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVY 200
LL ++P+ GG++ LT+ A+AW++++ND+RLALG L I PE L + P A H +VY
Sbjct 121 LLASLPEAGGKVVLTQEQADAWLSSLNDVRLALGTNLGIDADTPESLEPDDPRAPHLDVY 180
Query 201 QWLTVLQEYLVLVLM 215
WLT +Q+ LV LM
Sbjct 181 HWLTWMQDSLVQALM 195
>gi|226307370|ref|YP_002767330.1| hypothetical protein RER_38830 [Rhodococcus erythropolis PR4]
gi|226186487|dbj|BAH34591.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=196
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/195 (48%), Positives = 132/195 (68%), Gaps = 2/195 (1%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R W R + G +F+S + HEAA+L++L ++ GLLD+R SS+P DEL +TG++TG+
Sbjct 1 MRTWSRKSSLGGVKFKSEMDGHEAAVLRSLVESVAGLLDERASSAPQDELAALTGLRTGN 60
Query 83 AQRPGDPTLRRLLPDFYR--PDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQ 140
++ P +P L RLLPDF R PD + D D + N ALRSLHEPEIIDAKR +A+
Sbjct 61 SETPDNPVLARLLPDFQRTDPDKVAPDSDDLDDAGANVNGALRSLHEPEIIDAKRESARM 120
Query 141 LLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVY 200
LL ++P+ GG++ LT+ A+AW++++ND+RLALG L I PE L + P A H +VY
Sbjct 121 LLASLPEAGGKVVLTQEQADAWLSSLNDVRLALGTNLGIDADTPESLEPDDPRAPHLDVY 180
Query 201 QWLTVLQEYLVLVLM 215
WLT +Q+ LV LM
Sbjct 181 HWLTWMQDSLVQALM 195
>gi|226360563|ref|YP_002778341.1| hypothetical protein ROP_11490 [Rhodococcus opacus B4]
gi|226239048|dbj|BAH49396.1| hypothetical protein [Rhodococcus opacus B4]
Length=195
Score = 171 bits (433), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/193 (46%), Positives = 123/193 (64%), Gaps = 1/193 (0%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R W R + G + RS + HEA +L++L +++GLL++R +S+P DEL +TG++TG+
Sbjct 1 MRMWSRKNSLGGMKLRSEMDAHEATVLRSLVASVLGLLEERAASAPDDELAALTGMRTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPD-DLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQL 141
P + L RLLPDF+RPD D DDD + N ALR LHEPEIIDAK A +
Sbjct 61 TTAPDEEVLARLLPDFHRPDMDAPDDDEIRAESKADVNGALRGLHEPEIIDAKLAAGSVI 120
Query 142 LDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQ 201
L TVP+NGG++ LT A+AW++ +ND+RLALG L I P+ L P A H ++Y
Sbjct 121 LHTVPENGGKVLLTPEQADAWLSGLNDVRLALGTNLGIDADTPDELDPGDPRAPHLDIYH 180
Query 202 WLTVLQEYLVLVL 214
WLT +Q+ LV L
Sbjct 181 WLTWMQDSLVQAL 193
>gi|111018444|ref|YP_701416.1| hypothetical protein RHA1_ro01440 [Rhodococcus jostii RHA1]
gi|110817974|gb|ABG93258.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=195
Score = 171 bits (432), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 87/193 (46%), Positives = 124/193 (65%), Gaps = 1/193 (0%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R W R + G + RS + HEA +L++L +++GLL++R +S+P DEL +TG++TG+
Sbjct 1 MRMWSRKNSLGGVKLRSEMDAHEATVLRSLVASVLGLLEERAASAPEDELAALTGMRTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPD-DLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQL 141
P + L RLLPDF+RPD D DDD + + N ALR LHEPEIIDAK A +
Sbjct 61 TTAPDEEVLARLLPDFHRPDMDAPDDDEIRAESNADINGALRGLHEPEIIDAKVAAGSVI 120
Query 142 LDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQ 201
L TVP+NGG++ LT A+AW++ +ND+RLALG L I P+ + P A H ++Y
Sbjct 121 LHTVPENGGKVLLTPEQADAWLSGLNDVRLALGTNLGIDSDTPDEIDPADPRAPHLDIYH 180
Query 202 WLTVLQEYLVLVL 214
WLT +Q+ LV L
Sbjct 181 WLTWMQDSLVQAL 193
>gi|317508766|ref|ZP_07966416.1| hypothetical protein HMPREF9336_02788 [Segniliparus rugosus ATCC
BAA-974]
gi|316252929|gb|EFV12349.1| hypothetical protein HMPREF9336_02788 [Segniliparus rugosus ATCC
BAA-974]
Length=198
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/202 (45%), Positives = 127/202 (63%), Gaps = 9/202 (4%)
Query 13 GEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDEL 72
GEIR V W+R ++ DG + R A HE +L+ L+ +++G +R S PSDEL
Sbjct 4 GEIR------VGPWRRTDSGDGQQIRIQFAEHELQVLRALSRSVLGWFAERRQSEPSDEL 57
Query 73 EEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIID 132
E+TGI+ GHA+ P LRRLLPD +RPDD D + + N+A+RSLHEPE+++
Sbjct 58 SELTGIRIGHAEPPTGVALRRLLPDMHRPDDGDGREERE---TRELNSAMRSLHEPEVLE 114
Query 133 AKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHP 192
AK + ++P++ G L+ +A +W+AA+NDLRL LG +L+I P PE+LP HP
Sbjct 115 AKEGFGRVFAASLPEHAGEAVLSMDEARSWVAALNDLRLTLGSILDITPDTPEQLPPGHP 174
Query 193 LAAHFNVYQWLTVLQEYLVLVL 214
AA VY WLTVLQE L++ L
Sbjct 175 HAAQLGVYHWLTVLQESLLIAL 196
>gi|326385033|ref|ZP_08206705.1| hypothetical protein SCNU_18918 [Gordonia neofelifaecis NRRL
B-59395]
gi|326196247|gb|EGD53449.1| hypothetical protein SCNU_18918 [Gordonia neofelifaecis NRRL
B-59395]
Length=214
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/198 (46%), Positives = 127/198 (65%), Gaps = 7/198 (3%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R W+R+ D R S+L +E LL ++ ++ LL++R ++P D L E+TGI TGH
Sbjct 1 MRTWRRIGAGDDVRICSNLENYECQLLASMVESITELLNERSETAPRDALSELTGIATGH 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDG--SESFNAALRSLHEPEIIDAKRVAAQQ 140
++ P D TL RLLPDF+RP D +P V G + N LRS++EP+IIDAK AA
Sbjct 61 SRAPDDVTLGRLLPDFHRP----DQEPEMVAGPIAADLNGGLRSVNEPQIIDAKLAAAGV 116
Query 141 LLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVY 200
+LDT+P +GG + LTE A+ W+ A+ D+RLALG ML I P +LP +HP AAH +VY
Sbjct 117 VLDTLPGDGGDVSLTEEQADCWLTALTDIRLALGAMLGITDE-PSKLPPDHPHAAHQDVY 175
Query 201 QWLTVLQEYLVLVLMGSR 218
WL+V+Q LV LM +
Sbjct 176 DWLSVVQGLLVEALMSAE 193
>gi|312139204|ref|YP_004006540.1| hypothetical protein REQ_17860 [Rhodococcus equi 103S]
gi|311888543|emb|CBH47855.1| conserved hypothetical protein [Rhodococcus equi 103S]
Length=193
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/196 (45%), Positives = 128/196 (66%), Gaps = 5/196 (2%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R W R + G + RS + HEAA+L++L ++ GLL++R +S+P+DEL +TG++TG+
Sbjct 1 MRTWTRKNSLGGLKLRSEMDAHEAAVLRSLVTSVSGLLEERAASAPTDELAALTGLRTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSE--SFNAALRSLHEPEIIDAKRVAAQQ 140
++ P D L RLLPDF RPD D + D +E + N+ALRSLHEP+IID K A
Sbjct 61 SETPSDEVLARLLPDFQRPDP---DKADSADDTERGNVNSALRSLHEPDIIDDKLAAGSV 117
Query 141 LLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVY 200
+L TVP GG++ LT A+AW+A +ND+RLALG L I P+ + + P A H++VY
Sbjct 118 ILQTVPAEGGKVVLTPEQADAWLAGLNDVRLALGTNLGIDSDTPDEVDPDDPRAPHYDVY 177
Query 201 QWLTVLQEYLVLVLMG 216
WLT +Q+ LV L+
Sbjct 178 HWLTWMQDSLVQALIA 193
>gi|296393926|ref|YP_003658810.1| hypothetical protein Srot_1516 [Segniliparus rotundus DSM 44985]
gi|296181073|gb|ADG97979.1| Domain of unknown function DUF2017 [Segniliparus rotundus DSM
44985]
Length=197
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/202 (45%), Positives = 122/202 (61%), Gaps = 10/202 (4%)
Query 13 GEIRGYSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDEL 72
GEIR V W+R + R A HE +L+ L+ +++ +R +S PSDEL
Sbjct 4 GEIR------VGPWRRGGSGAEQSIRVRFAEHELQVLRTLSRSVLDWFAERRNSEPSDEL 57
Query 73 EEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIID 132
E+TGI+TGH + P LRRLLPD PDD D + NAA+R LHEPE+++
Sbjct 58 AELTGIRTGHTEPPSSAALRRLLPDMCHPDDEGTDSAEVRE----LNAAMRGLHEPEVLE 113
Query 133 AKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHP 192
AK A + LD++P++ G + LT +A +W+AA+NDLRL LG +L + P PERLP HP
Sbjct 114 AKEGAGRVFLDSLPEHAGEVVLTLDEAKSWVAALNDLRLTLGSILGVAPDTPERLPPGHP 173
Query 193 LAAHFNVYQWLTVLQEYLVLVL 214
AA VY WLTVLQE L++ L
Sbjct 174 HAAQLGVYHWLTVLQESLLIAL 195
>gi|54023054|ref|YP_117296.1| hypothetical protein nfa10870 [Nocardia farcinica IFM 10152]
gi|54014562|dbj|BAD55932.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=195
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/195 (46%), Positives = 126/195 (65%), Gaps = 7/195 (3%)
Query 21 SIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKT 80
+ VR+W R + G + R+ + HEA +L++L GA+ GLL +R S+P DEL +TG++T
Sbjct 5 AAVRKWTRKNSLGGLKLRAEMDAHEAEVLRSLVGAVSGLLAERAQSAPEDELSALTGLRT 64
Query 81 GHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSES-FNAALRSLHEPEIIDAKRVAAQ 139
G+ P DP L RLLPDF+R +P + D + N+ALR+LHEPEIIDAK A
Sbjct 65 GNTAPPDDPRLARLLPDFHR------SEPGSPDADRAGLNSALRALHEPEIIDAKLAAGS 118
Query 140 QLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNV 199
+LDTVP GG++ LT A+AW++A+ D+RLALG +L I P++L + P A H +V
Sbjct 119 VVLDTVPARGGKIVLTPEQADAWLSALTDVRLALGTVLGIDAETPDQLDPDDPRAPHLDV 178
Query 200 YQWLTVLQEYLVLVL 214
Y WLT +Q+ L+ L
Sbjct 179 YHWLTWMQDSLLQAL 193
>gi|325673490|ref|ZP_08153181.1| hypothetical protein HMPREF0724_10963 [Rhodococcus equi ATCC
33707]
gi|325555511|gb|EGD25182.1| hypothetical protein HMPREF0724_10963 [Rhodococcus equi ATCC
33707]
Length=193
Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/196 (45%), Positives = 128/196 (66%), Gaps = 5/196 (2%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R W R + G + RS + HEAA+L++L ++ GLL++R +S+P+DEL +TG++TG+
Sbjct 1 MRTWTRKNSLGGLKLRSEMDAHEAAVLRSLVTSVSGLLEERAASAPTDELAALTGLRTGN 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSE--SFNAALRSLHEPEIIDAKRVAAQQ 140
++ P D L RLLPDF RPD D + D +E + N+ALRSLHEP+IID K A
Sbjct 61 SETPSDEVLARLLPDFQRPDP---DKADSGDDTERGNVNSALRSLHEPDIIDDKLAAGSV 117
Query 141 LLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVY 200
+L TVP GG++ LT A+AW+A +ND+RLALG L I P+ + + P A H++VY
Sbjct 118 ILQTVPAEGGKVVLTPEQADAWLAGLNDVRLALGTNLGIDSDTPDEVDPDDPRAPHYDVY 177
Query 201 QWLTVLQEYLVLVLMG 216
WLT +Q+ LV L+
Sbjct 178 HWLTWMQDSLVQALIA 193
>gi|302529731|ref|ZP_07282073.1| transcriptional regulatory protein [Streptomyces sp. AA4]
gi|302438626|gb|EFL10442.1| transcriptional regulatory protein [Streptomyces sp. AA4]
Length=193
Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/199 (44%), Positives = 124/199 (63%), Gaps = 9/199 (4%)
Query 18 YSGSIVRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITG 77
+ ++V+ W+R G + EAA+L+ L G + +L R +P DEL E+TG
Sbjct 4 HGTALVKAWRR----KGDAILAGFEQQEAAVLRGLVGQLEDMLTARAEEAPQDELAELTG 59
Query 78 IKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVA 137
I+TG A+ P DP L RLLPDF+R LD D+P+ D + AA+RSLHEPE+++ K
Sbjct 60 IRTGPAESPDDPVLSRLLPDFHR---LDPDNPSREDLDSA--AAMRSLHEPELLEKKVGV 114
Query 138 AQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHF 197
A+ +LDT+P +GG ++LT A+AW+ A+ND+RLALG L++ P+ LP + P A H
Sbjct 115 AKIVLDTLPRDGGSVKLTFEQADAWLGALNDVRLALGTALDVTEDMPDELPEDDPRAPHL 174
Query 198 NVYQWLTVLQEYLVLVLMG 216
VY WLT +QE L+ L G
Sbjct 175 GVYHWLTWVQETLIQALTG 193
>gi|325002221|ref|ZP_08123333.1| hypothetical protein PseP1_25816 [Pseudonocardia sp. P1]
Length=182
Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/188 (46%), Positives = 113/188 (61%), Gaps = 13/188 (6%)
Query 26 WKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQR 85
WKR D RF S + EAA+L+ L + +L DR S +P DEL +TGI+TG R
Sbjct 4 WKRSGRGDRVRFTSGFSGEEAAVLRGLFTEVRQMLADRASLAPEDELATLTGIRTGPTSR 63
Query 86 PGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTV 145
P D L RLLPDF D LRSLHEPE+I+AK AA+ +LDT+
Sbjct 64 PTDRVLARLLPDFTTED-------------SDLAGGLRSLHEPELIEAKDKAAETVLDTL 110
Query 146 PDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTV 205
P++GGRLEL+ A+AW+AA+ND+RLALG L++ P++LP + P H VY WLT
Sbjct 111 PESGGRLELSPDQADAWLAALNDVRLALGTALDVSEDMPDQLPDDDPRGQHLGVYHWLTF 170
Query 206 LQEYLVLV 213
+Q+ LV V
Sbjct 171 VQDSLVRV 178
>gi|300789535|ref|YP_003769826.1| hypothetical protein AMED_7716 [Amycolatopsis mediterranei U32]
gi|299799049|gb|ADJ49424.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340531191|gb|AEK46396.1| hypothetical protein RAM_39645 [Amycolatopsis mediterranei S699]
Length=185
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/185 (45%), Positives = 116/185 (63%), Gaps = 5/185 (2%)
Query 32 RDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQRPGDPTL 91
R G + EAA+L+ L + +L R +P DEL E+TGI+TG ++ P DP L
Sbjct 6 RKGAVIHAGFEQQEAAVLRGLVSQLEDMLTARAEEAPQDELAELTGIRTGPSESPDDPVL 65
Query 92 RRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTVPDNGGR 151
RLLPDF++ LD D+P+ D AA+RSLHEPE++D K A+ +LDT+P +GG
Sbjct 66 SRLLPDFHK---LDPDNPSREDIDSV--AAMRSLHEPELLDIKVGVAKIVLDTLPRDGGH 120
Query 152 LELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTVLQEYLV 211
+ LTE A+AW++A+ND+RLALG L++ P+ LP + P A H VY WLT +QE L+
Sbjct 121 VRLTEEQADAWLSALNDVRLALGTALDVTEDMPDELPEDDPRAPHLGVYHWLTWVQETLI 180
Query 212 LVLMG 216
L G
Sbjct 181 QALTG 185
>gi|296139014|ref|YP_003646257.1| hypothetical protein Tpau_1288 [Tsukamurella paurometabola DSM
20162]
gi|296027148|gb|ADG77918.1| Domain of unknown function DUF2017 [Tsukamurella paurometabola
DSM 20162]
Length=202
Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/200 (47%), Positives = 128/200 (64%), Gaps = 10/200 (5%)
Query 23 VRRWK-RVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTG 81
+R W+ + R RF S + P E L+++L G++I LLD+R+ +P DEL E+TG++TG
Sbjct 1 MRNWQAKRGVRGDVRFVSKMEPEEVGLVRSLVGSLIELLDEREDCAPHDELAELTGLRTG 60
Query 82 HAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDG-----SESFNAALRSLHEPEIIDAKRV 136
H++ P + LRRLLPDFYRP D P AVD + NAALRSL+EPE+IDAKR
Sbjct 61 HSEPPDEGVLRRLLPDFYRPGA---DAPGAVDAPSGEFAHDLNAALRSLNEPEVIDAKRA 117
Query 137 AAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPL-AA 195
AAQ +L T+PD G + LTE++A W+ +NDLRLALG +L I P+ P A
Sbjct 118 AAQTVLATLPDRAGTVTLTEAEAQDWLTCINDLRLALGALLGITADLPDGPSSEDPAKAG 177
Query 196 HFNVYQWLTVLQEYLVLVLM 215
H +VY WL+ L + LV V++
Sbjct 178 HVDVYHWLSALLDVLVSVML 197
>gi|333921287|ref|YP_004494868.1| hypothetical protein AS9A_3630 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483508|gb|AEF42068.1| hypothetical protein AS9A_3630 [Amycolicicoccus subflavus DQS3-9A1]
Length=164
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/165 (48%), Positives = 109/165 (67%), Gaps = 2/165 (1%)
Query 52 LAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLLPDFYRPDDLDDDDPTA 111
+ +++ +LD+R++ SP DELEE+TG++TG A P + L RLLPDF+R D ++ +
Sbjct 1 MVQSVVTMLDERENVSPHDELEELTGMRTGSASPPENSVLGRLLPDFHRVDAEGVEEKS- 59
Query 112 VDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELTESDANAWIAAVNDLRL 171
D + N+ALRSL+EP II+AKR A LL+T+P GG++ L+ A+AW+ AVND RL
Sbjct 60 -DETAGLNSALRSLNEPHIIEAKRGVASVLLETLPPEGGKVSLSPEQADAWVTAVNDARL 118
Query 172 ALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTVLQEYLVLVLMG 216
ALG MLEI PE + N P A VY WLT +Q+ LV +MG
Sbjct 119 ALGTMLEISDETPEEIDPNDPRAPQLGVYHWLTWMQDSLVTAVMG 163
>gi|319948541|ref|ZP_08022672.1| hypothetical protein ES5_04176 [Dietzia cinnamea P4]
gi|319437788|gb|EFV92777.1| hypothetical protein ES5_04176 [Dietzia cinnamea P4]
Length=206
Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 119/205 (59%), Gaps = 11/205 (5%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
++ W+R + G R +S + HE +L L ++ +L+ R S+P DEL EITG+++GH
Sbjct 1 MKAWQRKSSLGGTRIKSVMESHEVQILHALVSNIVDMLEQRRDSAPRDELAEITGMRSGH 60
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDG---SESFNAALRSLHEPEIIDAKRVAAQ 139
+Q P + L RLLPDF+RP+ D D + D + + NA +R LHEP IIDAK A
Sbjct 61 SQLPAEAPLARLLPDFHRPEAADRRDGSEADRAAVARAHNAGMRMLHEPAIIDAKLDCAG 120
Query 140 QLLDTVPDNGGRLELTESDANAWIAAVNDLRLALG-VMLEIGPRG-------PERLPGNH 191
+L ++P GG + LT A AW+ +ND+RL LG V+LE G PE +P +
Sbjct 121 VVLRSLPSRGGTVSLTLDQAGAWMRCLNDVRLGLGAVLLEAGSTDGTPATDIPEYVPDDD 180
Query 192 PLAAHFNVYQWLTVLQEYLVLVLMG 216
P +A +VY WLT +Q+ L L G
Sbjct 181 PRSAQLDVYHWLTFMQDSLCTALDG 205
>gi|331695360|ref|YP_004331599.1| hypothetical protein Psed_1507 [Pseudonocardia dioxanivorans
CB1190]
gi|326950049|gb|AEA23746.1| Domain of unknown function DUF2017-containing protein [Pseudonocardia
dioxanivorans CB1190]
Length=185
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/186 (45%), Positives = 113/186 (61%), Gaps = 13/186 (6%)
Query 26 WKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQR 85
W+R R ++L E +L+ L G + +L R + +P+DEL E+TGI+TG +
Sbjct 4 WRRSGRGAKARLVATLEQQEVVVLRGLVGEVREMLAARSADAPADELAELTGIRTGSSTP 63
Query 86 PGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTV 145
P D L RLLP+F R DDP + ALRSLHEP +I+AK AA +L+++
Sbjct 64 PEDRVLARLLPEFSR------DDP-------ALAGALRSLHEPALIEAKDGAAVTVLESL 110
Query 146 PDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTV 205
PD GGR+ELT A+AW+ A+ND+RLALG L+I PE LP + P AAH VY WLT
Sbjct 111 PDGGGRVELTPEQADAWLTALNDVRLALGTALDIQEDMPEELPPDDPRAAHLGVYHWLTF 170
Query 206 LQEYLV 211
+Q+ LV
Sbjct 171 VQDALV 176
>gi|257056895|ref|YP_003134727.1| hypothetical protein Svir_29220 [Saccharomonospora viridis DSM
43017]
gi|256586767|gb|ACU97900.1| protein of unknown function (DUF2017) [Saccharomonospora viridis
DSM 43017]
Length=185
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/196 (43%), Positives = 119/196 (61%), Gaps = 13/196 (6%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+R W+R G + EAA+L+ L + +L R +P DEL E+TGI+TG
Sbjct 1 MREWRR----KGGKVVGGFEQQEAAVLRGLVSQVEDMLKARAEEAPQDELAELTGIRTGP 56
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFN--AALRSLHEPEIIDAKRVAAQQ 140
++ P DP L RLLPDF++ +D D P+ E+ + AALRSL+EPE++DAK A+
Sbjct 57 SKGPDDPVLGRLLPDFHK---IDPDTPS----KETLDSAAALRSLYEPEVLDAKIGVAEV 109
Query 141 LLDTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVY 200
+L T+P GG + LT A+AW++A+ND+RLALG L++ P+ LP + P A H VY
Sbjct 110 VLQTLPPGGGEVRLTYEQADAWLSALNDVRLALGTALDVTEDVPDELPPDDPRAPHLGVY 169
Query 201 QWLTVLQEYLVLVLMG 216
WLT +Q+ LV L G
Sbjct 170 HWLTWVQDTLVQALTG 185
>gi|256375148|ref|YP_003098808.1| hypothetical protein Amir_1006 [Actinosynnema mirum DSM 43827]
gi|255919451|gb|ACU34962.1| hypothetical protein Amir_1006 [Actinosynnema mirum DSM 43827]
Length=185
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/194 (44%), Positives = 115/194 (60%), Gaps = 9/194 (4%)
Query 23 VRRWKRVETRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGH 82
+ RW R G + L EAA+++ L + +L R +P DEL E+TGI+TG
Sbjct 1 MNRWHR----SGEQVVCHLDRQEAAVVRGLVSQIQDMLLARAEEAPQDELSELTGIRTGP 56
Query 83 AQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLL 142
+ P D L RLLPDF+R LD D+ A G E AALRSLHEP ++DAK A +L
Sbjct 57 STPPDDLILGRLLPDFHR---LDLDEHEA--GDEDSAAALRSLHEPALLDAKTGVAAVVL 111
Query 143 DTVPDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
DT P GG + L ++A AW++A+ND+RLALG L++ P+ LP + P + H VY W
Sbjct 112 DTCPPEGGDVRLGPAEAEAWLSALNDVRLALGTALDVQEDMPDELPEDDPRSPHLGVYHW 171
Query 203 LTVLQEYLVLVLMG 216
LT +QE LV +MG
Sbjct 172 LTWVQETLVEAVMG 185
>gi|134097792|ref|YP_001103453.1| transcriptional regulatory protein [Saccharopolyspora erythraea
NRRL 2338]
gi|291005572|ref|ZP_06563545.1| transcriptional regulatory protein [Saccharopolyspora erythraea
NRRL 2338]
gi|133910415|emb|CAM00528.1| probable transcriptional regulatory protein [Saccharopolyspora
erythraea NRRL 2338]
Length=187
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/185 (42%), Positives = 108/185 (59%), Gaps = 3/185 (1%)
Query 31 TRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQRPGDPT 90
TR + + EAA+++ L G + +L R +P DEL E+TGI+TG P D
Sbjct 5 TRKNGHVVAEFSQQEAAVVRGLVGQIKDMLTARADEAPQDELSELTGIRTGPTTPPQDRV 64
Query 91 LRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTVPDNGG 150
L RLLPDFYR D + + A+RSLHEPE++D K A+ +L+T P +GG
Sbjct 65 LGRLLPDFYRHDP---ETGESDAEDADAAGAMRSLHEPELLDRKTGVAELVLETCPRDGG 121
Query 151 RLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQWLTVLQEYL 210
R+ELT A+ W+AA+ND+RLALG L++ P+ LP + H VYQWLT +Q+ L
Sbjct 122 RVELTGEQADGWLAALNDVRLALGTALDVDDDMPDELPEDDLRREHLGVYQWLTWVQDSL 181
Query 211 VLVLM 215
V +M
Sbjct 182 VDAVM 186
>gi|213965909|ref|ZP_03394100.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951487|gb|EEB62878.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=183
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/197 (37%), Positives = 111/197 (57%), Gaps = 18/197 (9%)
Query 23 VRRWKRVETR--DGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKT 80
+R WKR + G ++ ++ E LL NLA + L +R S+P DEL E+TG+
Sbjct 1 MRPWKRKRSLLGGGVKYVTAFEGTERDLLLNLAATVADSLMERARSAPKDELAEMTGMPV 60
Query 81 GHAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQ 140
GH++ P DP L RLLPDF +P + + E NA +R LHE EI+++K + +
Sbjct 61 GHSEAPSDPKLARLLPDFTKPGE---------ESVEGENALMRQLHESEIVESKLHSLRA 111
Query 141 LLDTV-PDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNV 199
++D + P G++ ++ESDA+AW+A +NDLR+ L V +E E++ +
Sbjct 112 IIDALEPAESGQVSISESDAHAWVAGINDLRIYLHVSMENLNGSIEQIEQTDAM------ 165
Query 200 YQWLTVLQEYLVLVLMG 216
YQWL+ QE L+ LMG
Sbjct 166 YQWLSYNQESLLDQLMG 182
>gi|258651918|ref|YP_003201074.1| hypothetical protein Namu_1695 [Nakamurella multipartita DSM
44233]
gi|258555143|gb|ACV78085.1| hypothetical protein Namu_1695 [Nakamurella multipartita DSM
44233]
Length=181
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/184 (40%), Positives = 104/184 (57%), Gaps = 18/184 (9%)
Query 36 RFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQRPGDPTLRRLL 95
++ +S P EA L+ +L + LL R + +PSD L ++TG+ G A +P DP + RLL
Sbjct 10 KYSASFEPAEATLIADLVDQVRQLLAGRRAEAPSDPLAQLTGMTMGPASKPQDPAVARLL 69
Query 96 PDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDTVPDNGGRLELT 155
PDF+ D E ++ LR LHEPE+I K AA LLDT+P GG + L
Sbjct 70 PDFHAQD-------------EQLSSGLRVLHEPELIATKDAAAVALLDTLPRGGGPVRLD 116
Query 156 ESDANAWIAAVNDLRLALGVMLEIGPRGPERLPG----NHPLAAHFNVYQWLTVLQEYLV 211
+ A AW +A+ND+RLALGV L+I PG + P AA + Y+WL+ +Q+ LV
Sbjct 117 DDAAAAWSSALNDVRLALGVRLQIT-EDDSPPPGVDDPDSPQAAMYATYRWLSAVQDSLV 175
Query 212 LVLM 215
++
Sbjct 176 SAML 179
>gi|227488217|ref|ZP_03918533.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227542815|ref|ZP_03972864.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227091787|gb|EEI27099.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227181441|gb|EEI62413.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=177
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/157 (43%), Positives = 88/157 (57%), Gaps = 17/157 (10%)
Query 23 VRRWKRVETRDGP-RFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTG 81
+ WK+ + P F + L P E +L NLA + L DR S+P D LEEITG+ +G
Sbjct 1 METWKKKKPFMRPAHFETVLGPMEREVLGNLASVVAEKLIDRTQSAPKDPLEEITGMSSG 60
Query 82 HAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAK----RVA 137
H + P DP L RLLPDF R +D + DG NA +RSL E +I AK +V
Sbjct 61 HKEPPTDPGLARLLPDFQRAEDEE------FDGD---NALMRSLTENDICRAKLENLQVI 111
Query 138 AQQLLDTVPDNGGRLELTESDANAWIAAVNDLRLALG 174
AQ+L PD ++LT +AN W+AAVND+RL +
Sbjct 112 AQKL---GPDGNVAVQLTPEEANQWVAAVNDIRLYIA 145
>gi|337291441|ref|YP_004630462.1| hypothetical protein CULC22_01834 [Corynebacterium ulcerans BR-AD22]
gi|334697466|gb|AEG82263.1| hypothetical protein CULC809_01732 [Corynebacterium ulcerans
809]
gi|334699747|gb|AEG84543.1| hypothetical protein CULC22_01834 [Corynebacterium ulcerans BR-AD22]
Length=178
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/196 (35%), Positives = 97/196 (50%), Gaps = 26/196 (13%)
Query 26 WKRVE-TRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQ 84
WK+ + G F P E +L NLA + L R ++P DEL E+TG+ +GH +
Sbjct 4 WKKKKGLMRGAHFVCVFEPMEREVLGNLASTVSEALIHRAQTAPKDELAELTGMPSGHKE 63
Query 85 RPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESF---NAALRSLHEPEIIDAKRVAAQQL 141
P DP L RLLPDF + +G E F N+ LR LHE +I AK Q L
Sbjct 64 APTDPALARLLPDFEK------------EGDEEFEGDNSLLRCLHETDITRAKVEHLQVL 111
Query 142 LDTV-PDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVY 200
+ PD G +++TE +A+AW+AA+ND+RL + G + N+
Sbjct 112 GQALGPDGGVHVDITEPEAHAWVAALNDIRLYVASGEVFGEEAEQDRD---------NLV 162
Query 201 QWLTVLQEYLVLVLMG 216
+WL QE L+ +MG
Sbjct 163 EWLAYNQESLLNAMMG 178
>gi|305681152|ref|ZP_07403959.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
gi|305659357|gb|EFM48857.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
Length=183
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/156 (38%), Positives = 87/156 (56%), Gaps = 11/156 (7%)
Query 23 VRRWKRVETRDGP-RFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTG 81
++ WKR ++ GP +++ P E +L NLA + L +R S+P DEL E+TG+ +G
Sbjct 1 MQAWKRKKSLFGPAKYQCVFEPIEREILGNLAATVANALMERAQSAPRDELAELTGMPSG 60
Query 82 HAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQL 141
H P DP+L RLLPDF R D + E N+ LRSLHE +I K + +
Sbjct 61 HKDAPDDPSLARLLPDFEREGD---------EEYEGDNSLLRSLHESDITKGKLINLAII 111
Query 142 LDTV-PDNGGRLELTESDANAWIAAVNDLRLALGVM 176
+ PD + +TE +A+AW++ +NDLRL L +
Sbjct 112 GQALGPDGSVNVTITEDEADAWLSGINDLRLYLSAI 147
>gi|38234426|ref|NP_940193.1| hypothetical protein DIP1856 [Corynebacterium diphtheriae NCTC
13129]
gi|38200689|emb|CAE50385.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length=178
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/200 (35%), Positives = 98/200 (49%), Gaps = 29/200 (14%)
Query 23 VRRWKRVE-TRDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTG 81
+ WK+ + G R++ +L P E +L NLA + +L R S+P DEL E+TG+ G
Sbjct 1 MEAWKKKKGLFKGARYQCTLEPIEREVLGNLAANISEVLISRAQSAPKDELAELTGMGGG 60
Query 82 HAQRPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESF---NAALRSLHEPEIIDAKRVAA 138
H + P DP L RLLPDF + G E F N+ LRSLHE +I AK
Sbjct 61 HTEAPEDPGLARLLPDF------------EMQGDEEFDGDNSLLRSLHENDITRAKLANL 108
Query 139 QQLLDTV-PDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHF 197
Q + + PD + +TE +A AW+A +ND+RL L + A
Sbjct 109 QTIGQALGPDGSVFVTVTEEEAQAWVAGLNDIRLYL---------ASSEVQDTEDRDA-- 157
Query 198 NVYQWLTVLQEYLVLVLMGS 217
+ +WL QE L+ +MGS
Sbjct 158 -LVEWLAFAQESLLTAMMGS 176
>gi|25028965|ref|NP_739019.1| hypothetical protein CE2409 [Corynebacterium efficiens YS-314]
gi|259508029|ref|ZP_05750929.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|23494252|dbj|BAC19219.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259164370|gb|EEW48924.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=180
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/195 (36%), Positives = 98/195 (51%), Gaps = 21/195 (10%)
Query 26 WKRVET-RDGPRFRSSLAPHEAALLKNLAGAMIGLLDDRDSSSPSDELEEITGIKTGHAQ 84
WKR + R+ L P E +L NL+ ++ L R +P D L E+TGI +GH +
Sbjct 4 WKRRKALMRSARYTCVLEPMEREVLGNLSAVVLEALIHRAQDAPKDPLAELTGIPSGHKE 63
Query 85 RPGDPTLRRLLPDFYRPDDLDDDDPTAVDGSESFNAALRSLHEPEIIDAKRVAAQQLLDT 144
P DP L RLLPDF + D + D N+ LRSLHE +I K +A Q++++
Sbjct 64 APRDPALARLLPDFQQEGDEEYD---------GDNSLLRSLHENDITRQK-IANLQVINS 113
Query 145 V--PDNGGRLELTESDANAWIAAVNDLRLALGVMLEIGPRGPERLPGNHPLAAHFNVYQW 202
PD G + + E +A+AW+A +ND+RL L G E N+ QW
Sbjct 114 ALGPDGGVAVSIPEEEAHAWLAGLNDIRLYLASGELKGGEAAEE--------DRENLVQW 165
Query 203 LTVLQEYLVLVLMGS 217
L QE L+ +MGS
Sbjct 166 LAYNQESLLEAMMGS 180
Lambda K H
0.318 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 267044465184
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40