BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1337
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608477|ref|NP_215853.1| integral membrane protein [Mycobact... 468 4e-130
gi|15840792|ref|NP_335829.1| rhomboid family protein [Mycobacter... 441 4e-122
gi|323720154|gb|EGB29257.1| membrane protein [Mycobacterium tube... 392 2e-107
gi|240169480|ref|ZP_04748139.1| integral membrane protein [Mycob... 367 6e-100
gi|183984030|ref|YP_001852321.1| integral membrane protein [Myco... 367 1e-99
gi|296170276|ref|ZP_06851867.1| rhomboid family protein [Mycobac... 343 1e-92
gi|118464581|ref|YP_880789.1| rhomboid family protein [Mycobacte... 328 4e-88
gi|336460959|gb|EGO39840.1| uncharacterized membrane protein [My... 327 7e-88
gi|15827590|ref|NP_301853.1| integral membrane protein [Mycobact... 325 4e-87
gi|1722988|sp|P53426.1|Y1171_MYCLE RecName: Full=Uncharacterized... 325 5e-87
gi|342858006|ref|ZP_08714662.1| rhomboid family protein [Mycobac... 322 4e-86
gi|254819167|ref|ZP_05224168.1| rhomboid family protein [Mycobac... 317 7e-85
gi|308197807|gb|ADO17920.1| rhomboid protease 2 [Mycobacterium s... 310 2e-82
gi|118471996|ref|YP_889159.1| rhomboid family protein [Mycobacte... 308 5e-82
gi|108800811|ref|YP_641008.1| rhomboid-like protein [Mycobacteri... 282 4e-74
gi|120405244|ref|YP_955073.1| rhomboid family protein [Mycobacte... 268 5e-70
gi|333989980|ref|YP_004522594.1| hypothetical protein JDM601_134... 262 3e-68
gi|145222943|ref|YP_001133621.1| rhomboid family protein [Mycoba... 238 5e-61
gi|169628572|ref|YP_001702221.1| hypothetical protein MAB_1481 [... 236 2e-60
gi|41408523|ref|NP_961359.1| hypothetical protein MAP2425c [Myco... 232 3e-59
gi|308197802|gb|ADO17917.1| rhomboid-like protein [Mycobacterium... 232 3e-59
gi|317508967|ref|ZP_07966600.1| rhomboid family protein [Segnili... 210 1e-52
gi|312139206|ref|YP_004006542.1| serine peptidase [Rhodococcus e... 185 6e-45
gi|325673488|ref|ZP_08153179.1| rhomboid family protein [Rhodoco... 185 6e-45
gi|296395039|ref|YP_003659923.1| rhomboid family protein [Segnil... 184 1e-44
gi|226307368|ref|YP_002767328.1| hypothetical protein RER_38810 ... 181 9e-44
gi|229494054|ref|ZP_04387823.1| rhomboid family protein [Rhodoco... 179 2e-43
gi|333921285|ref|YP_004494866.1| hypothetical protein AS9A_3628 ... 173 2e-41
gi|226360558|ref|YP_002778336.1| rhomboid family protein [Rhodoc... 172 3e-41
gi|54023060|ref|YP_117302.1| hypothetical protein nfa10930 [Noca... 172 4e-41
gi|300789526|ref|YP_003769817.1| hypothetical protein AMED_7707 ... 163 3e-38
gi|340531181|gb|AEK46386.1| hypothetical protein RAM_39595 [Amyc... 162 3e-38
gi|256375156|ref|YP_003098816.1| rhomboid family protein [Actino... 162 3e-38
gi|326332075|ref|ZP_08198360.1| rhomboid family protein [Nocardi... 161 7e-38
gi|326385031|ref|ZP_08206703.1| Rhomboid family protein [Gordoni... 158 8e-37
gi|343927057|ref|ZP_08766544.1| hypothetical protein GOALK_078_0... 157 2e-36
gi|111018439|ref|YP_701411.1| hypothetical protein RHA1_ro01435 ... 156 2e-36
gi|134097798|ref|YP_001103459.1| rhomboid-like protein [Saccharo... 149 2e-34
gi|291005566|ref|ZP_06563539.1| rhomboid-like protein [Saccharop... 149 3e-34
gi|257056888|ref|YP_003134720.1| membrane protein [Saccharomonos... 147 1e-33
gi|302529723|ref|ZP_07282065.1| rhomboid family protein [Strepto... 147 2e-33
gi|254422281|ref|ZP_05035999.1| peptidase, S54 (rhomboid) family... 145 5e-33
gi|311741209|ref|ZP_07715033.1| rhomboid family protein [Coryneb... 142 3e-32
gi|311742468|ref|ZP_07716277.1| rhomboid family protein [Aeromic... 142 4e-32
gi|255324316|ref|ZP_05365437.1| putative membrane protein [Coryn... 141 7e-32
gi|182437996|ref|YP_001825715.1| hypothetical protein SGR_4203 [... 140 1e-31
gi|331695365|ref|YP_004331604.1| peptidase S54, rhomboid domain-... 140 1e-31
gi|324997297|ref|ZP_08118409.1| hypothetical protein PseP1_00969... 140 2e-31
gi|227833924|ref|YP_002835631.1| hypothetical protein cauri_2100... 140 2e-31
gi|262201907|ref|YP_003273115.1| rhomboid family protein [Gordon... 140 2e-31
>gi|15608477|ref|NP_215853.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|31792533|ref|NP_855026.1| integral membrane protein [Mycobacterium bovis AF2122/97]
gi|121637268|ref|YP_977491.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
81 more sequence titles
Length=240
Score = 468 bits (1203), Expect = 4e-130, Method: Compositional matrix adjust.
Identities = 240/240 (100%), Positives = 240/240 (100%), Gaps = 0/240 (0%)
Query 1 MGMTPRRKRRGGAVQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLS 60
MGMTPRRKRRGGAVQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLS
Sbjct 1 MGMTPRRKRRGGAVQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLS 60
Query 61 GSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATA 120
GSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATA
Sbjct 61 GSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATA 120
Query 121 IIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLF 180
IIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLF
Sbjct 121 IIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLF 180
Query 181 VYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPKL 240
VYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPKL
Sbjct 181 VYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPKL 240
>gi|15840792|ref|NP_335829.1| rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|13880987|gb|AAK45643.1| Rhomboid family protein [Mycobacterium tuberculosis CDC1551]
Length=227
Score = 441 bits (1135), Expect = 4e-122, Method: Compositional matrix adjust.
Identities = 226/227 (99%), Positives = 227/227 (100%), Gaps = 0/227 (0%)
Query 14 VQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLK 73
+QITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLK
Sbjct 1 MQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLK 60
Query 74 TDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLI 133
TDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLI
Sbjct 61 TDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLI 120
Query 134 GNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVL 193
GNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVL
Sbjct 121 GNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVL 180
Query 194 GQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPKL 240
GQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPKL
Sbjct 181 GQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPKL 227
>gi|323720154|gb|EGB29257.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|339294317|gb|AEJ46428.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339297956|gb|AEJ50066.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
Length=204
Score = 392 bits (1007), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 203/204 (99%), Positives = 204/204 (100%), Gaps = 0/204 (0%)
Query 37 VVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMAN 96
+VGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMAN
Sbjct 1 MVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMAN 60
Query 97 TIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWL 156
TIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWL
Sbjct 61 TIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWL 120
Query 157 AFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAY 216
AFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAY
Sbjct 121 AFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAY 180
Query 217 LLSAPERKARALKRAGARSGHPKL 240
LLSAPERKARALKRAGARSGHPKL
Sbjct 181 LLSAPERKARALKRAGARSGHPKL 204
>gi|240169480|ref|ZP_04748139.1| integral membrane protein [Mycobacterium kansasii ATCC 12478]
Length=222
Score = 367 bits (943), Expect = 6e-100, Method: Compositional matrix adjust.
Identities = 185/220 (85%), Positives = 195/220 (89%), Gaps = 0/220 (0%)
Query 20 TGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWG 79
T PRTP Q +RPRW+VGG TILTFV LLYLVELIDQLS LDVNGIRPLKTDGLWG
Sbjct 2 TAYPRTPAKQPERRPRWIVGGATILTFVGLLYLVELIDQLSRHSLDVNGIRPLKTDGLWG 61
Query 80 VIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSS 139
++FAPLLHANW HLMANTIPLLVLGFLMTLAGLSRFVWAT I+WILGG GTWLIGNVGS+
Sbjct 62 IVFAPLLHANWAHLMANTIPLLVLGFLMTLAGLSRFVWATVIVWILGGFGTWLIGNVGST 121
Query 140 CGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGV 199
CGPTDHIGASGLIFGWL FLLVFGLFVRK WDIVIGLVVLF YGG+LLGA+P LG CGGV
Sbjct 122 CGPTDHIGASGLIFGWLTFLLVFGLFVRKVWDIVIGLVVLFFYGGVLLGALPRLGMCGGV 181
Query 200 SWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPK 239
SWQGHL GA+AGVVAAYLLS PERKARALK+AG R PK
Sbjct 182 SWQGHLCGALAGVVAAYLLSVPERKARALKKAGNRQLRPK 221
>gi|183984030|ref|YP_001852321.1| integral membrane protein [Mycobacterium marinum M]
gi|183177356|gb|ACC42466.1| integral membrane protein [Mycobacterium marinum M]
Length=222
Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 183/218 (84%), Positives = 195/218 (90%), Gaps = 0/218 (0%)
Query 22 RPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVI 81
PRTP TQ +RPRWV GG TILTFVALLYLVELIDQL+ LD+NGIRPL+TDGLWG+I
Sbjct 4 HPRTPATQPEERPRWVTGGATILTFVALLYLVELIDQLTRHSLDLNGIRPLQTDGLWGII 63
Query 82 FAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCG 141
FAPLLHANW HLMANT+PLLVLGFLMTLAGL+RFVWATAI+WILGG GTWLIGNVGSSCG
Sbjct 64 FAPLLHANWAHLMANTVPLLVLGFLMTLAGLARFVWATAIVWILGGFGTWLIGNVGSSCG 123
Query 142 PTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSW 201
PTDHIGASGLIFGWLAFLLVFGLFVRK WDI+IGL VLF YGGILLGA+P LG CGGVSW
Sbjct 124 PTDHIGASGLIFGWLAFLLVFGLFVRKVWDIIIGLAVLFFYGGILLGALPRLGVCGGVSW 183
Query 202 QGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPK 239
QGHL GA+AGVVAAY LSAPERKAR LK+AG R PK
Sbjct 184 QGHLCGALAGVVAAYFLSAPERKARELKKAGERPSSPK 221
>gi|296170276|ref|ZP_06851867.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894999|gb|EFG74718.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=226
Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/239 (75%), Positives = 196/239 (83%), Gaps = 14/239 (5%)
Query 1 MGMTPRRKRRGGAVQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLS 60
MG T RR+R P TP Q RP WVVGG TILTFVALLYL+EL+DQL+
Sbjct 1 MGKTTRRRR-------------PGTPPAQA-GRPAWVVGGATILTFVALLYLIELVDQLT 46
Query 61 GSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATA 120
LD NGIRPL+ DGLWG++FAP+LHANW HLMANT+PLLVLGFLMTLAGLSRFVWATA
Sbjct 47 RHSLDANGIRPLEADGLWGIVFAPVLHANWQHLMANTVPLLVLGFLMTLAGLSRFVWATA 106
Query 121 IIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLF 180
I+WILGG GTWLIG+VGSSCGPTDHIGASGLIFGWLAFLLVFG+FVR+ DI IGLVVLF
Sbjct 107 IVWILGGFGTWLIGDVGSSCGPTDHIGASGLIFGWLAFLLVFGIFVRRFVDIAIGLVVLF 166
Query 181 VYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPK 239
YGG+LLGAMPVLG+CGGVSWQGHL GA+AGVVAAY LSAPERKAR +RAG + K
Sbjct 167 AYGGVLLGAMPVLGRCGGVSWQGHLCGAIAGVVAAYWLSAPERKAREKRRAGTATPRAK 225
>gi|118464581|ref|YP_880789.1| rhomboid family protein [Mycobacterium avium 104]
gi|254774374|ref|ZP_05215890.1| rhomboid family protein [Mycobacterium avium subsp. avium ATCC
25291]
gi|118165868|gb|ABK66765.1| rhomboid family protein [Mycobacterium avium 104]
gi|308197800|gb|ADO17916.1| rhomboid protease [Mycobacterium avium]
Length=223
Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 163/216 (76%), Positives = 185/216 (86%), Gaps = 0/216 (0%)
Query 24 RTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFA 83
R P QT KR V G TTI+TFVALLYLVELIDQL+ LDV+GIRP + DGLWG++FA
Sbjct 7 RAPAAQTKKRSTAVAGATTIVTFVALLYLVELIDQLTRHALDVHGIRPQRLDGLWGILFA 66
Query 84 PLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPT 143
P+LH +W HLMANT+PLLVLGFLMTLAGL+RFVWAT IIWI+GG GTWLIGNVGSSCGPT
Sbjct 67 PVLHESWQHLMANTVPLLVLGFLMTLAGLARFVWATVIIWIVGGFGTWLIGNVGSSCGPT 126
Query 144 DHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQG 203
DHIGASGLIFGWLAFLLVFG+FVR+ DI+IGL V+F YGG+LLGAMPVLG CGGVSWQG
Sbjct 127 DHIGASGLIFGWLAFLLVFGIFVRRVRDIIIGLAVMFAYGGVLLGAMPVLGLCGGVSWQG 186
Query 204 HLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPK 239
HL GA+AGV+AAYLLS PERK R+ ++ GA + PK
Sbjct 187 HLCGAIAGVLAAYLLSEPERKGRSGRKTGAVAPRPK 222
>gi|336460959|gb|EGO39840.1| uncharacterized membrane protein [Mycobacterium avium subsp.
paratuberculosis S397]
Length=223
Score = 327 bits (839), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 162/216 (75%), Positives = 184/216 (86%), Gaps = 0/216 (0%)
Query 24 RTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFA 83
R P QT KR G TTI+TFVALLYLVELIDQL+ LDV+GIRP + DGLWG++FA
Sbjct 7 RAPAAQTKKRSTAAAGATTIVTFVALLYLVELIDQLTRHALDVHGIRPQRVDGLWGIVFA 66
Query 84 PLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPT 143
P+LH +W HLMANT+PLLVLGFLMTLAGL+RFVWAT IIWI+GG GTWLIGNVGSSCGPT
Sbjct 67 PVLHESWQHLMANTVPLLVLGFLMTLAGLARFVWATVIIWIVGGFGTWLIGNVGSSCGPT 126
Query 144 DHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQG 203
DHIGASGLIFGWLAFLLVFG+FVR+ DI+IGL V+F YGG+LLGAMPVLG CGGVSWQG
Sbjct 127 DHIGASGLIFGWLAFLLVFGIFVRRVRDIIIGLAVMFAYGGVLLGAMPVLGLCGGVSWQG 186
Query 204 HLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPK 239
HL GA+AGV+AAYLLS PERK R+ ++ GA + PK
Sbjct 187 HLCGAIAGVLAAYLLSEPERKGRSGRKTGAGAPRPK 222
>gi|15827590|ref|NP_301853.1| integral membrane protein [Mycobacterium leprae TN]
gi|221230067|ref|YP_002503483.1| hypothetical protein MLBr_01171 [Mycobacterium leprae Br4923]
gi|13093141|emb|CAC31552.1| possible conserved integral membrane protein [Mycobacterium leprae]
gi|219933174|emb|CAR71266.1| possible conserved integral membrane protein [Mycobacterium leprae
Br4923]
Length=238
Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 169/231 (74%), Positives = 191/231 (83%), Gaps = 4/231 (1%)
Query 11 GGAVQITRPTGR-PRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGI 69
GG+ +T P P T+T +R RW+VGG TILTF+ALLYLVELIDQL+ LD NGI
Sbjct 9 GGSALMTLPEKNLGYKPETETNRRLRWMVGGVTILTFMALLYLVELIDQLTRHSLDNNGI 68
Query 70 RPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLG 129
R LKTD LWG+ FAP+LHANW HL+ANTIPLLVLGFL+ LAGLSRF+W TA++WI GG
Sbjct 69 RLLKTDVLWGISFAPVLHANWQHLVANTIPLLVLGFLIALAGLSRFIWVTAMVWIFGGSA 128
Query 130 TWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGA 189
TWLIGN+GSS GPTDHIG SGLIFGWLAFLLVFGLFVR+GWDI IG +VLF YGG+LLG
Sbjct 129 TWLIGNMGSSFGPTDHIGVSGLIFGWLAFLLVFGLFVRRGWDI-IGCMVLFAYGGVLLGV 187
Query 190 MPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPKL 240
MPVLG+CGGVSWQGHL GA++GVVAAYLLSAPERK RALK AG S P+L
Sbjct 188 MPVLGRCGGVSWQGHLCGAISGVVAAYLLSAPERKTRALKEAGTDS--PRL 236
>gi|1722988|sp|P53426.1|Y1171_MYCLE RecName: Full=Uncharacterized protein ML1171
gi|466925|gb|AAA50900.1| B1549_C3_240 [Mycobacterium leprae]
Length=251
Score = 325 bits (832), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 169/231 (74%), Positives = 191/231 (83%), Gaps = 4/231 (1%)
Query 11 GGAVQITRPTGR-PRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGI 69
GG+ +T P P T+T +R RW+VGG TILTF+ALLYLVELIDQL+ LD NGI
Sbjct 22 GGSALMTLPEKNLGYKPETETNRRLRWMVGGVTILTFMALLYLVELIDQLTRHSLDNNGI 81
Query 70 RPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLG 129
R LKTD LWG+ FAP+LHANW HL+ANTIPLLVLGFL+ LAGLSRF+W TA++WI GG
Sbjct 82 RLLKTDVLWGISFAPVLHANWQHLVANTIPLLVLGFLIALAGLSRFIWVTAMVWIFGGSA 141
Query 130 TWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGA 189
TWLIGN+GSS GPTDHIG SGLIFGWLAFLLVFGLFVR+GWDI IG +VLF YGG+LLG
Sbjct 142 TWLIGNMGSSFGPTDHIGVSGLIFGWLAFLLVFGLFVRRGWDI-IGCMVLFAYGGVLLGV 200
Query 190 MPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPKL 240
MPVLG+CGGVSWQGHL GA++GVVAAYLLSAPERK RALK AG S P+L
Sbjct 201 MPVLGRCGGVSWQGHLCGAISGVVAAYLLSAPERKTRALKEAGTDS--PRL 249
>gi|342858006|ref|ZP_08714662.1| rhomboid family protein [Mycobacterium colombiense CECT 3035]
gi|342135339|gb|EGT88505.1| rhomboid family protein [Mycobacterium colombiense CECT 3035]
Length=203
Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 159/202 (79%), Positives = 177/202 (88%), Gaps = 0/202 (0%)
Query 38 VGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANT 97
+G TI TFVALLYLVELIDQLS LD NGIRPL+TDGLWG++FAPLLH +W HL ANT
Sbjct 1 MGAVTIFTFVALLYLVELIDQLSRHSLDANGIRPLETDGLWGIVFAPLLHESWQHLAANT 60
Query 98 IPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLA 157
+PLL+LGFLMTLAGLSRFVWAT I+WILGG GTWLIGNVGSSCGPTDHIGASGLIFGWLA
Sbjct 61 VPLLILGFLMTLAGLSRFVWATVIVWILGGFGTWLIGNVGSSCGPTDHIGASGLIFGWLA 120
Query 158 FLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYL 217
FLLVFG+FVR+ DI+IGL+VLF YGG+LLGAMPVLG+CGGVSWQGHL GA+AGVVAAYL
Sbjct 121 FLLVFGIFVRRMRDIIIGLIVLFAYGGVLLGAMPVLGRCGGVSWQGHLCGAIAGVVAAYL 180
Query 218 LSAPERKARALKRAGARSGHPK 239
LSAPERK R ++ G+ P
Sbjct 181 LSAPERKGRTSRKTGSTVPRPT 202
>gi|254819167|ref|ZP_05224168.1| rhomboid family protein [Mycobacterium intracellulare ATCC 13950]
Length=204
Score = 317 bits (813), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 160/199 (81%), Positives = 178/199 (90%), Gaps = 0/199 (0%)
Query 37 VVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMAN 96
+VG TILTFV LLY VELIDQ++ LD NGIRPL+ DGLWG++F+PLLHA+W HLMAN
Sbjct 1 MVGAATILTFVVLLYFVELIDQMTRHSLDANGIRPLELDGLWGIVFSPLLHASWEHLMAN 60
Query 97 TIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWL 156
T+PLLVLGFLMTLAGLSRFVWATAI+WILGGLGTWLIG+VGSSCGPTDHIGASGLIFGWL
Sbjct 61 TVPLLVLGFLMTLAGLSRFVWATAIVWILGGLGTWLIGDVGSSCGPTDHIGASGLIFGWL 120
Query 157 AFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAY 216
AFLLVFG+FVR+ +IVIGLVV+F YGG+LLGAMPVLG CGGVSWQ HL GAVAGVVAAY
Sbjct 121 AFLLVFGIFVRRVSNIVIGLVVMFAYGGVLLGAMPVLGLCGGVSWQAHLCGAVAGVVAAY 180
Query 217 LLSAPERKARALKRAGARS 235
LSAPERKAR+ + AG S
Sbjct 181 WLSAPERKARSKRTAGTAS 199
>gi|308197807|gb|ADO17920.1| rhomboid protease 2 [Mycobacterium smegmatis]
Length=245
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/221 (73%), Positives = 180/221 (82%), Gaps = 4/221 (1%)
Query 10 RGGAVQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGI 69
RG +T PTG P + K P W GG TILTFVALLY+VEL DQLSG RLD NGI
Sbjct 21 RGRGTGMTLPTG----PAPKKNKSPAWKTGGITILTFVALLYVVELADQLSGGRLDRNGI 76
Query 70 RPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLG 129
RPL+TDGLWGV+FAPLLHANW HLMANT+P LVLGFL+TLAGL+RFVWATAIIWILGG+G
Sbjct 77 RPLETDGLWGVLFAPLLHANWEHLMANTVPALVLGFLVTLAGLARFVWATAIIWILGGIG 136
Query 130 TWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGA 189
TWLIG+VG PT+HIGASGLIFGWL FLLVFG F R W IV+G++VL VYGGIL GA
Sbjct 137 TWLIGDVGGCPLPTNHIGASGLIFGWLTFLLVFGWFTRNAWQIVVGILVLLVYGGILWGA 196
Query 190 MPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKR 230
+PVL CGGVSWQGHL GA+AGVVAAY+L+ PERKAR ++
Sbjct 197 VPVLNGCGGVSWQGHLCGAIAGVVAAYVLAGPERKARDSRK 237
>gi|118471996|ref|YP_889159.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|118173283|gb|ABK74179.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
Length=219
Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 158/215 (74%), Positives = 178/215 (83%), Gaps = 4/215 (1%)
Query 16 ITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTD 75
+T PTG P + K P W GG TILTFVALLY+VEL DQLSG RLD NGIRPL+TD
Sbjct 1 MTLPTG----PAPKKNKSPAWKTGGITILTFVALLYVVELADQLSGGRLDRNGIRPLETD 56
Query 76 GLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGN 135
GLWGV+FAPLLHANW HLMANT+P LVLGFL+TLAGL+RFVWATAIIWILGG+GTWLIG+
Sbjct 57 GLWGVLFAPLLHANWEHLMANTVPALVLGFLVTLAGLARFVWATAIIWILGGIGTWLIGD 116
Query 136 VGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQ 195
VG PT+HIGASGLIFGWL FLLVFG F R W IV+G++VL VYGGIL GA+PVL
Sbjct 117 VGGCPLPTNHIGASGLIFGWLTFLLVFGWFTRNAWQIVVGILVLLVYGGILWGAVPVLNG 176
Query 196 CGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKR 230
CGGVSWQGHL GA+AGVVAAY+L+ PERKAR ++
Sbjct 177 CGGVSWQGHLCGAIAGVVAAYVLAGPERKARDSRK 211
>gi|108800811|ref|YP_641008.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119869951|ref|YP_939903.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|126436409|ref|YP_001072100.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|108771230|gb|ABG09952.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119696040|gb|ABL93113.1| Rhomboid family protein [Mycobacterium sp. KMS]
gi|126236209|gb|ABN99609.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length=229
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 155/231 (68%), Positives = 188/231 (82%), Gaps = 12/231 (5%)
Query 16 ITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTD 75
+T PTG P P ++KRP W+VGG TI++FV LLY++EL+D L+G RLD NGIRPL+TD
Sbjct 3 VTGPTGSPAYPA-PSSKRPAWIVGGATIVSFVVLLYVIELVDSLTGHRLDENGIRPLETD 61
Query 76 GLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGN 135
GLWG++F+PLLHA+W HL+ANT P LVLGFLMTLAGLSRF++ATAI+WILGGLGTWLIGN
Sbjct 62 GLWGIVFSPLLHADWQHLLANTGPALVLGFLMTLAGLSRFIYATAIVWILGGLGTWLIGN 121
Query 136 VGSSC------GPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGA 189
+G+ C +HIGASGLIFGWLAFL+VFG F RK W+IV+G++VLFVYGGILLG
Sbjct 122 LGTHCPYVGVRCEVNHIGASGLIFGWLAFLIVFGFFTRKAWEIVVGVIVLFVYGGILLGV 181
Query 190 MPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGARSGHPKL 240
+P GVSWQGHL GAVAGVVAAY+LS+PERKAR L+R +R+ P L
Sbjct 182 LP---GTPGVSWQGHLCGAVAGVVAAYVLSSPERKARELRR--SRTAPPYL 227
>gi|120405244|ref|YP_955073.1| rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
gi|119958062|gb|ABM15067.1| Rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
Length=225
Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/217 (68%), Positives = 177/217 (82%), Gaps = 10/217 (4%)
Query 21 GRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGV 80
G P P + KRP W+VGG T+L+FV LL+++EL D L+G RLD NGIRPL+TDGL G+
Sbjct 6 GHPGIPA-EPKKRPAWMVGGLTVLSFVVLLWVIELFDSLTGHRLDGNGIRPLETDGLAGI 64
Query 81 IFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSC 140
+FAPLLH+NW HL+ANT+P LVLGFLMTLAGLSRF++ATAI+WI+GG+GTWLIGN+G+ C
Sbjct 65 LFAPLLHSNWEHLLANTVPALVLGFLMTLAGLSRFIFATAIVWIVGGVGTWLIGNIGAHC 124
Query 141 ------GPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLG 194
T+HIGASGLIFGWLAFL+VFG F RK W+IV+G+VVLFVYG +LLG +P
Sbjct 125 PYVGVRCETNHIGASGLIFGWLAFLIVFGFFTRKVWEIVVGVVVLFVYGSVLLGVLP--- 181
Query 195 QCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRA 231
GVSWQGHLSGAVAGV+AAYLLS PERKAR ++A
Sbjct 182 GTPGVSWQGHLSGAVAGVLAAYLLSGPERKARERRKA 218
>gi|333989980|ref|YP_004522594.1| hypothetical protein JDM601_1340 [Mycobacterium sp. JDM601]
gi|333485948|gb|AEF35340.1| integral membrane protein [Mycobacterium sp. JDM601]
Length=191
Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/185 (78%), Positives = 163/185 (89%), Gaps = 0/185 (0%)
Query 46 FVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGF 105
FVALLYLVE +DQL G LD NGIRPL++DGLWGV+FAPLLHANW HL+ANT P LVLGF
Sbjct 3 FVALLYLVEAVDQLGGHGLDRNGIRPLQSDGLWGVLFAPLLHANWAHLLANTGPALVLGF 62
Query 106 LMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLF 165
LMTLAG +RF+ ATAI+W++GGLGTWLIGNVGS+CGPTDHIGASGLIFGWLAFL+VFG F
Sbjct 63 LMTLAGQTRFLLATAIVWLVGGLGTWLIGNVGSACGPTDHIGASGLIFGWLAFLVVFGWF 122
Query 166 VRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKA 225
R+ W I++GLVVL +YGGIL GA+PVL CGGVSWQGHL GA+AGV+AAYLLS PER A
Sbjct 123 TRRIWQILVGLVVLVLYGGILWGAVPVLNVCGGVSWQGHLCGAIAGVLAAYLLSGPERNA 182
Query 226 RALKR 230
RA +R
Sbjct 183 RARRR 187
>gi|145222943|ref|YP_001133621.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|315443406|ref|YP_004076285.1| hypothetical protein Mspyr1_17880 [Mycobacterium sp. Spyr1]
gi|145215429|gb|ABP44833.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|315261709|gb|ADT98450.1| uncharacterized membrane protein [Mycobacterium sp. Spyr1]
Length=225
Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/215 (67%), Positives = 168/215 (79%), Gaps = 9/215 (4%)
Query 21 GRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGV 80
G P P KRP WVVGG T+++FV LL+L+EL D L+G RLD NGIRPL+TDGL G+
Sbjct 6 GYPLQPA-GPAKRPVWVVGGVTVVSFVVLLWLIELFDTLTGHRLDDNGIRPLETDGLTGI 64
Query 81 IFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSC 140
+ APLLH+NW HL+ANT P LVLGFLMTLAGLSRF++ATAIIW GGLGTWLIGNVG+
Sbjct 65 LVAPLLHSNWEHLIANTGPALVLGFLMTLAGLSRFIFATAIIWFAGGLGTWLIGNVGAPT 124
Query 141 G-----PTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQ 195
T+HIGASGLIFGWL FL+VFG F R W+IV+G+VV F+YGGILLG +P
Sbjct 125 YNGVIVETNHIGASGLIFGWLTFLIVFGFFTRTVWEIVVGVVVFFIYGGILLGVLP---G 181
Query 196 CGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKR 230
GVSWQGHL GA+AGV+AAYLLS PERK RAL+R
Sbjct 182 TFGVSWQGHLCGALAGVLAAYLLSGPERKTRALRR 216
>gi|169628572|ref|YP_001702221.1| hypothetical protein MAB_1481 [Mycobacterium abscessus ATCC 19977]
gi|169240539|emb|CAM61567.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=225
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/210 (62%), Positives = 162/210 (78%), Gaps = 6/210 (2%)
Query 25 TPTTQTTK--RPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIF 82
+P+++ + RP+WV GG + +FVALLY+VE ID ++G RLD NGIRPL+TDGL G++F
Sbjct 13 SPSSRRERSGRPQWVTGGVLVASFVALLYVVEGIDSVTGHRLDENGIRPLETDGLDGILF 72
Query 83 APLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGP 142
APLLHANW HL+ANT+P LVLGFL AG+ RF+ ATAIIW+LGG+GTWLIGN+G
Sbjct 73 APLLHANWGHLVANTVPALVLGFLAAAAGVGRFLLATAIIWLLGGVGTWLIGNIGLPY-E 131
Query 143 TDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQ 202
T+HIGASGLIFGWL +++V G F R I+IG VVL +YGG+L G +P GQ GVSWQ
Sbjct 132 TNHIGASGLIFGWLTYVIVRGFFNRSVGQILIGAVVLVLYGGVLWGVLP--GQF-GVSWQ 188
Query 203 GHLSGAVAGVVAAYLLSAPERKARALKRAG 232
GHLSGAVAGV+AAY LS ERK +A + G
Sbjct 189 GHLSGAVAGVLAAYWLSGRERKVQAARGPG 218
>gi|41408523|ref|NP_961359.1| hypothetical protein MAP2425c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396879|gb|AAS04742.1| hypothetical protein MAP_2425c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=147
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/146 (81%), Positives = 131/146 (90%), Gaps = 0/146 (0%)
Query 94 MANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIF 153
MANT+PLLVLGFLMTLAGL+RFVWAT IIWI+GG GTWLIGNVGSSCGPTDHIGASGLIF
Sbjct 1 MANTVPLLVLGFLMTLAGLARFVWATVIIWIVGGFGTWLIGNVGSSCGPTDHIGASGLIF 60
Query 154 GWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVV 213
GWLAFLLVFG+FVR+ DI+IGL V+F YGG+LLGAMPVLG CGGVSWQGHL GA+AGV+
Sbjct 61 GWLAFLLVFGIFVRRVRDIIIGLAVMFAYGGVLLGAMPVLGLCGGVSWQGHLCGAIAGVL 120
Query 214 AAYLLSAPERKARALKRAGARSGHPK 239
AAYLLS PERK R+ ++ GA + PK
Sbjct 121 AAYLLSEPERKGRSGRKTGAGAPRPK 146
>gi|308197802|gb|ADO17917.1| rhomboid-like protein [Mycobacterium avium subsp. paratuberculosis]
Length=147
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/146 (81%), Positives = 131/146 (90%), Gaps = 0/146 (0%)
Query 94 MANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIF 153
MANT+PLLVLGFLMTLAGL+RFVWAT IIWI+GG GTWLIGNVGSSCGPTDHIGASGLIF
Sbjct 1 MANTVPLLVLGFLMTLAGLARFVWATVIIWIVGGFGTWLIGNVGSSCGPTDHIGASGLIF 60
Query 154 GWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVV 213
GWLAFLLVFG+FVR+ DI+IGL V+F YGG+LLGAMPVLG CGGVSWQGHL GA+AGV+
Sbjct 61 GWLAFLLVFGIFVRRVRDIIIGLAVMFAYGGVLLGAMPVLGLCGGVSWQGHLCGAIAGVL 120
Query 214 AAYLLSAPERKARALKRAGARSGHPK 239
AAYLLS PERK R+ ++ GA + PK
Sbjct 121 AAYLLSEPERKGRSGRKTGAVAPRPK 146
>gi|317508967|ref|ZP_07966600.1| rhomboid family protein [Segniliparus rugosus ATCC BAA-974]
gi|316252732|gb|EFV12169.1| rhomboid family protein [Segniliparus rugosus ATCC BAA-974]
Length=207
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/205 (59%), Positives = 147/205 (72%), Gaps = 5/205 (2%)
Query 23 PRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIF 82
P P + ++ +W +G T +L ++ALLY+VE +D L RLD GIRPL+ +GLWG++F
Sbjct 6 PNVPA-RPSRGDQWKIGATLVLGYLALLYVVEFVDGLDRHRLDRYGIRPLEPEGLWGILF 64
Query 83 APLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGP 142
AP LHA W HL AN +LVLG + +AGL RF+ ATAIIW +GGLGTWLIG+VGS P
Sbjct 65 APFLHAGWQHLNANAGAILVLGLVGVVAGLGRFLVATAIIWTVGGLGTWLIGDVGSRW-P 123
Query 143 TDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQ 202
T HIGASGL+FGWLAFLLV GLF RK I+IGL V F YG +L G +P GQ GVSWQ
Sbjct 124 TIHIGASGLVFGWLAFLLVQGLFSRKPGQILIGLAVFFCYGAVLWGVLP--GQQ-GVSWQ 180
Query 203 GHLSGAVAGVVAAYLLSAPERKARA 227
GHL GA++GV+AA+ LS R RA
Sbjct 181 GHLCGALSGVLAAFALSGRGRPGRA 205
>gi|312139206|ref|YP_004006542.1| serine peptidase [Rhodococcus equi 103S]
gi|311888545|emb|CBH47857.1| putative serine peptidase [Rhodococcus equi 103S]
Length=226
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/206 (52%), Positives = 137/206 (67%), Gaps = 9/206 (4%)
Query 20 TGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSR-LDVNGIRPLKTDGLW 78
TG T RP W T+ F +LY++E D ++ LD G+ P DGLW
Sbjct 11 TGSEVRVTPPRVPRPLWQRAAMTVGGFAVVLYVLEAFDTIAPKNPLDQWGVEPRTLDGLW 70
Query 79 GVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGS 138
G++FAP+LH W HL+ANT+PLLVLGFL+ ++G+ R + AT IIW++GG+GTWL G VG
Sbjct 71 GILFAPMLHYGWGHLLANTVPLLVLGFLVLMSGIGRGLAATGIIWVIGGVGTWLTGGVG- 129
Query 139 SCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGG 198
T H+GAS LIFGWL FLLV G+F R I +G+ VLFVYGG+L G +P GQ G
Sbjct 130 ----TAHLGASVLIFGWLTFLLVRGIFTRSFGQIALGVAVLFVYGGMLWGVLP--GQY-G 182
Query 199 VSWQGHLSGAVAGVVAAYLLSAPERK 224
+SWQGHL GA+ GVVAA++LSA RK
Sbjct 183 ISWQGHLFGAIGGVVAAWILSADARK 208
>gi|325673488|ref|ZP_08153179.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
gi|325555509|gb|EGD25180.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
Length=226
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/203 (53%), Positives = 137/203 (68%), Gaps = 15/203 (7%)
Query 23 PRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSR-LDVNGIRPLKTDGLWGVI 81
PR P RP W T+ F +LY++E D ++ LD G+ P DGLWG++
Sbjct 20 PRVP------RPLWQRAAMTVGGFAVVLYVLEAFDTIAPKNPLDQWGVEPRTLDGLWGIL 73
Query 82 FAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCG 141
FAP+LH W HL+ANT+PLLVLGFL+ ++G+ R + AT IIW++GG+GTWL G VG
Sbjct 74 FAPMLHYGWGHLLANTVPLLVLGFLVLMSGIGRGLAATGIIWVIGGVGTWLTGGVG---- 129
Query 142 PTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSW 201
T H+GAS LIFGWL FLLV G+F R I +G+ VLFVYGG+L G +P GQ G+SW
Sbjct 130 -TAHLGASVLIFGWLTFLLVRGIFTRSFGQIALGVAVLFVYGGMLWGVLP--GQY-GISW 185
Query 202 QGHLSGAVAGVVAAYLLSAPERK 224
QGHL GA+ GVVAA++LSA RK
Sbjct 186 QGHLFGAIGGVVAAWILSADARK 208
>gi|296395039|ref|YP_003659923.1| rhomboid family protein [Segniliparus rotundus DSM 44985]
gi|296182186|gb|ADG99092.1| Rhomboid family protein [Segniliparus rotundus DSM 44985]
Length=214
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/207 (54%), Positives = 144/207 (70%), Gaps = 10/207 (4%)
Query 22 RPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVI 81
+P P + ++ +W +G + ++A+LY VE +DQL RLD +GIRPL+ DGLWG++
Sbjct 3 QPDVPA-RPSRFEQWQLGVVLVFGYLAVLYAVEFVDQLDQHRLDRHGIRPLQADGLWGIL 61
Query 82 FAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCG 141
FAP LHA W HL AN +LVLG + AGL RF+ ATA+IW +GG GTWLIG +GS
Sbjct 62 FAPFLHAGWQHLNANAGAILVLGLVGVFAGLGRFLAATAMIWAIGGFGTWLIGGLGSRW- 120
Query 142 PTDHIGASGLIFGWLAFLLVFGLF-----VRKGWDIVIGLVVLFVYGGILLGAMPVLGQC 196
PTDHIGASG+IFGW+AFL++ G F R+ IV+GLVV F YG +L GA+P GQ
Sbjct 121 PTDHIGASGVIFGWIAFLILQGFFGSAPIGRRLGQIVLGLVVFFFYGAVLWGALP--GQP 178
Query 197 GGVSWQGHLSGAVAGVVAAYLLSAPER 223
GVSWQGHL GA+AG +AA++LS R
Sbjct 179 -GVSWQGHLCGALAGALAAFMLSKRGR 204
>gi|226307368|ref|YP_002767328.1| hypothetical protein RER_38810 [Rhodococcus erythropolis PR4]
gi|226186485|dbj|BAH34589.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length=219
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 97/214 (46%), Positives = 137/214 (65%), Gaps = 8/214 (3%)
Query 14 VQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLK 73
+ P RTP ++ W + F LLY++E++D +SG + G+ P
Sbjct 3 MDFNNPDFGTRTPAPKSGPPSVWKQSAVLVGGFAILLYVIEIVDVISGQNVQNAGVTPRT 62
Query 74 TDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLI 133
DGLWG++FAP+LH +W HL+ANTIP+L+LGFL+ ++G++R + AT IIW++GG+GTWL
Sbjct 63 LDGLWGILFAPVLHDDWAHLIANTIPVLILGFLVLVSGIARGLAATGIIWVIGGVGTWLF 122
Query 134 GNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVL 193
S +H+GAS LIFGW+ +LLV G F R I+IG+ V VYGG+L G +P
Sbjct 123 AGSNS-----NHVGASVLIFGWVTYLLVRGFFTRSFTQILIGVAVFVVYGGVLWGVLPSD 177
Query 194 GQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARA 227
+ VSWQGHL GA+ GVVAA+ L++ ER RA
Sbjct 178 PR---VSWQGHLFGAIGGVVAAWALTSRERAKRA 208
>gi|229494054|ref|ZP_04387823.1| rhomboid family protein [Rhodococcus erythropolis SK121]
gi|229319123|gb|EEN84975.1| rhomboid family protein [Rhodococcus erythropolis SK121]
Length=219
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (45%), Positives = 138/221 (63%), Gaps = 8/221 (3%)
Query 14 VQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLK 73
+ P RTP ++ W + F LLY++E++D +SG + GI P
Sbjct 3 MDFNSPDFGTRTPAPKSGPPSVWKQSAVLVGGFAILLYVIEIVDVISGQNVQNAGITPRT 62
Query 74 TDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLI 133
DGLWG++FAP+LH +W HL+ANTIP+L+LG+L+ ++G++R + AT IIW++GG+GTWL
Sbjct 63 LDGLWGILFAPVLHDDWGHLIANTIPVLILGYLVLVSGIARGLAATGIIWVIGGVGTWLF 122
Query 134 GNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVL 193
S +H+GAS LIFGW+ +LLV G F R I+IG+ V VYGG+L G +P
Sbjct 123 AGSNS-----NHVGASVLIFGWVTYLLVRGFFTRSFTQILIGVAVFVVYGGVLWGVLPSD 177
Query 194 GQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKRAGAR 234
+ VSWQGHL GA+ GVVAA+ L++ ER RA R
Sbjct 178 PR---VSWQGHLFGAIGGVVAAWALTSGERAKRAGSAPAVR 215
>gi|333921285|ref|YP_004494866.1| hypothetical protein AS9A_3628 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483506|gb|AEF42066.1| Conserved hypothetical membrane protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=238
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/189 (57%), Positives = 138/189 (74%), Gaps = 8/189 (4%)
Query 34 PRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHL 93
PRW G ++FV +LYL+EL+D L+ ++GI P TDGL GV+FAPL+HA+W HL
Sbjct 39 PRWQQGIVATVSFVGILYLIELLDVLTAHPFALSGIAPRTTDGLSGVLFAPLIHADWAHL 98
Query 94 MANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIF 153
MAN++PLLVLGFL+ L+ L+R + ATAIIW++GG+GTWL G T HIGAS ++F
Sbjct 99 MANSVPLLVLGFLVFLSSLTRALMATAIIWVIGGMGTWLTGGEN-----TVHIGASIIVF 153
Query 154 GWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVV 213
GWLAFL+ G+F R G ++IG VVLF YG +L G +P GQ GVSWQGHL GA+AGVV
Sbjct 154 GWLAFLVTQGIFTRSGVQLLIGGVVLFFYGTLLWGVLP--GQQ-GVSWQGHLFGALAGVV 210
Query 214 AAYLLSAPE 222
AA++LS E
Sbjct 211 AAWVLSGDE 219
>gi|226360558|ref|YP_002778336.1| rhomboid family protein [Rhodococcus opacus B4]
gi|226239043|dbj|BAH49391.1| rhomboid family protein [Rhodococcus opacus B4]
Length=224
Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/211 (52%), Positives = 145/211 (69%), Gaps = 8/211 (3%)
Query 25 TPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAP 84
+P + +P W+ + F LLY++E++D S RL+ NG++P DGLWG++FAP
Sbjct 20 SPAPASKSKPLWLQSAILVGAFTMLLYVIEIVDVASDERLEDNGVQPRTIDGLWGILFAP 79
Query 85 LLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTD 144
+LH +W HL ANT+PLLVLGFL+ L+G++R + AT I+W++GGLGTWL G S +
Sbjct 80 VLHDDWAHLFANTVPLLVLGFLVLLSGIARGLAATGIVWVVGGLGTWLSGGSYS-----N 134
Query 145 HIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGH 204
HIGAS LIFGWLA+LLV G+F R I++G+VV VYG +L G +P GVSWQGH
Sbjct 135 HIGASVLIFGWLAYLLVRGVFARNLGQILVGVVVFVVYGSLLWGVLP---SAPGVSWQGH 191
Query 205 LSGAVAGVVAAYLLSAPERKARALKRAGARS 235
L GAV G++AA+LLSA RK RA K G +S
Sbjct 192 LFGAVGGILAAWLLSADARKQRARKAVGPQS 222
>gi|54023060|ref|YP_117302.1| hypothetical protein nfa10930 [Nocardia farcinica IFM 10152]
gi|54014568|dbj|BAD55938.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=230
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/218 (50%), Positives = 135/218 (62%), Gaps = 14/218 (6%)
Query 7 RKRRGGAVQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSG-SRLD 65
R R GA T P P R W I FVALLY +E +D L G ++LD
Sbjct 14 RARADGATTTT-----PSRPGRFAGVRQLWARAAVLIAGFVALLYGIEGVDSLDGKAQLD 68
Query 66 VNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWIL 125
GI P + DGLWG+++AP+LH W HL+ANT+P+LVLGFL+ +AG+ R + ATAIIW++
Sbjct 69 DAGIHPRELDGLWGILWAPVLHHGWDHLLANTLPVLVLGFLVLIAGILRGLAATAIIWVV 128
Query 126 GGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGI 185
GLGTWL G G T H+GAS L+FGWL FL++ G F R IV+GLVVL YG +
Sbjct 129 AGLGTWLTGGSG-----TVHLGASALVFGWLTFLILRGWFARNLGQIVLGLVVLACYGSL 183
Query 186 LLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPER 223
L G +P + +SWQGHL GAV GVVAA L+ R
Sbjct 184 LWGVLPGPDR---ISWQGHLFGAVGGVVAARTLAGRRR 218
>gi|300789526|ref|YP_003769817.1| hypothetical protein AMED_7707 [Amycolatopsis mediterranei U32]
gi|299799040|gb|ADJ49415.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length=209
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/205 (49%), Positives = 126/205 (62%), Gaps = 12/205 (5%)
Query 23 PRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIF 82
P T + P+ V L+F LLYLVEL+D + LD GI GL GV+F
Sbjct 8 PETAAAKRVLPPKPVAAAIVALSFTLLLYLVELVDVILPGHLDQGGIHSRALSGLDGVLF 67
Query 83 APLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGP 142
AP+LH+ W HL ANT+P+LV FL AG+ RF TAIIW++ GLG WLI GP
Sbjct 68 APVLHSGWSHLFANTVPVLVFSFLAMAAGIGRFALVTAIIWVVSGLGVWLI-------GP 120
Query 143 TD--HIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVS 200
+D +GASGL FGWLA+LLV GLF R I++ +V+L V+ G+L G +P GVS
Sbjct 121 SDGVTVGASGLAFGWLAYLLVRGLFNRAAGQILVAVVLLGVWSGMLAGLLP---GNPGVS 177
Query 201 WQGHLSGAVAGVVAAYLLSAPERKA 225
WQGHL GA+AGV+AA+L + KA
Sbjct 178 WQGHLFGALAGVLAAWLTTRRAGKA 202
>gi|340531181|gb|AEK46386.1| hypothetical protein RAM_39595 [Amycolatopsis mediterranei S699]
Length=206
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/205 (49%), Positives = 126/205 (62%), Gaps = 12/205 (5%)
Query 23 PRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIF 82
P T + P+ V L+F LLYLVEL+D + LD GI GL GV+F
Sbjct 5 PETAAAKRVLPPKPVAAAIVALSFTLLLYLVELVDVILPGHLDQGGIHSRALSGLDGVLF 64
Query 83 APLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGP 142
AP+LH+ W HL ANT+P+LV FL AG+ RF TAIIW++ GLG WLI GP
Sbjct 65 APVLHSGWSHLFANTVPVLVFSFLAMAAGIGRFALVTAIIWVVSGLGVWLI-------GP 117
Query 143 TD--HIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVS 200
+D +GASGL FGWLA+LLV GLF R I++ +V+L V+ G+L G +P GVS
Sbjct 118 SDGVTVGASGLAFGWLAYLLVRGLFNRAAGQILVAVVLLGVWSGMLAGLLP---GNPGVS 174
Query 201 WQGHLSGAVAGVVAAYLLSAPERKA 225
WQGHL GA+AGV+AA+L + KA
Sbjct 175 WQGHLFGALAGVLAAWLTTRRAGKA 199
>gi|256375156|ref|YP_003098816.1| rhomboid family protein [Actinosynnema mirum DSM 43827]
gi|255919459|gb|ACU34970.1| Rhomboid family protein [Actinosynnema mirum DSM 43827]
Length=211
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/214 (44%), Positives = 132/214 (62%), Gaps = 11/214 (5%)
Query 19 PTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLW 78
P+ R P + P+ ++ +L F LY++E ID + LD NG+RP
Sbjct 6 PSSRAPRPLSHRVIPPKPLLSAVVVLLFTGALYVIEGIDTVLLGALDANGVRPRVWSEWD 65
Query 79 GVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGS 138
+++AP+LHA W HL+AN++PLLVL FL + G+ +F TA+IW+ GLG W+ G+VG
Sbjct 66 NLLWAPVLHAGWDHLIANSLPLLVLAFLASSGGVRQFFQVTAVIWLASGLGVWVFGSVGV 125
Query 139 SCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGG 198
H+GASGLIFG+L FLLV G+FVR W IV+ + V VYG +L G +P GQ G
Sbjct 126 ------HLGASGLIFGYLTFLLVRGVFVRSAWQIVVAIAVFAVYGAVLWGVLP--GQP-G 176
Query 199 VSWQGHLSGAVAGVVAAYLLSAPERKARALKRAG 232
+SW+GHL GAV GV+AA+ ++ + R KRA
Sbjct 177 ISWEGHLFGAVGGVLAAWGVAQDAKAER--KRAN 208
>gi|326332075|ref|ZP_08198360.1| rhomboid family protein [Nocardioidaceae bacterium Broad-1]
gi|325950213|gb|EGD42268.1| rhomboid family protein [Nocardioidaceae bacterium Broad-1]
Length=205
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/203 (47%), Positives = 133/203 (66%), Gaps = 11/203 (5%)
Query 32 KRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWH 91
+R W+ G L FVALL+++E D +SG +LD GI+P GL G++FAP+LH W
Sbjct 10 QRANWLRAGIWSLGFVALLWVLEATDYVSGHQLDTLGIQPRTDAGLLGIVFAPVLHFGWA 69
Query 92 HLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGL 151
HL NT+P L+LGFL+ +G+ R + AT IIW++GG+G WL+ GS G S L
Sbjct 70 HLYGNTLPALILGFLVLASGVGRGIVATLIIWVVGGVGVWLMSPPGSITA-----GTSML 124
Query 152 IFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAG 211
IFGWL +L++ GLF + I+IG+++ YG +LLG +P GQ GVSWQGHL GA+ G
Sbjct 125 IFGWLVYLIMRGLFSHRIGQIIIGVLIFLAYGSLLLGVLP--GQT-GVSWQGHLFGAIGG 181
Query 212 VVAAYLLSAPERK---ARALKRA 231
+AA+LL+ P +K ++A K+A
Sbjct 182 ALAAWLLNDPPKKQAQSKAQKKA 204
>gi|326385031|ref|ZP_08206703.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326196245|gb|EGD53447.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
Length=197
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/206 (46%), Positives = 129/206 (63%), Gaps = 10/206 (4%)
Query 34 PRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHL 93
P+W G T+ +L ++E ID G LD GI P + GL G+++APLLHA++ HL
Sbjct 2 PKWERSGITMGVIAVVLLVIEAIDMAIGGDLDEYGIVPRQLSGLDGILWAPLLHADFAHL 61
Query 94 MANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIF 153
+ N IP +VLGFL+ ++G RF+W TAI+W++ G G WL GS IGASG++F
Sbjct 62 IGNLIPGVVLGFLLLMSG--RFLWVTAIVWVVSGFGVWLTAPSGSVT-----IGASGIVF 114
Query 154 GWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVV 213
GWL++LL+ GLF R W ++ G+V+L VYGGIL G +P GVSWQGHL GAV GV+
Sbjct 115 GWLSYLLIRGLFNRDVWQVLGGVVLLAVYGGILWGVLP---HGDGVSWQGHLFGAVGGVL 171
Query 214 AAYLLSAPERKARALKRAGARSGHPK 239
AA++LS + + G P+
Sbjct 172 AAWMLSDRRDAGGSARTRPELKGGPR 197
>gi|343927057|ref|ZP_08766544.1| hypothetical protein GOALK_078_00030 [Gordonia alkanivorans NBRC
16433]
gi|343763012|dbj|GAA13470.1| hypothetical protein GOALK_078_00030 [Gordonia alkanivorans NBRC
16433]
Length=210
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/195 (46%), Positives = 123/195 (64%), Gaps = 10/195 (5%)
Query 32 KRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWH 91
RP W+ T + +A L++VELID + LD NGI P + DGL G+++AP+LHA+W
Sbjct 16 SRPLWLRSLITTVCIIAALFVVELIDAATRYDLDQNGIEPRQVDGLDGILWAPMLHADWE 75
Query 92 HLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGL 151
HL AN +P VL FL+ + RF+ T IIW++ G+G WL S +GASG+
Sbjct 76 HLFANLMPGAVLCFLVLMT--QRFLIVTGIIWVISGVGVWLFAAPYSIT-----VGASGI 128
Query 152 IFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAG 211
IFGWL FL+V GLF R W I+ G+V+ +YG IL G +P VSWQ HL GA+AG
Sbjct 129 IFGWLTFLIVRGLFNRDLWQILGGVVLFLIYGSILWGVLP---SNPVVSWQAHLFGAIAG 185
Query 212 VVAAYLLSAPERKAR 226
V+AA+ L++ +RK +
Sbjct 186 VLAAWFLASGDRKRK 200
>gi|111018439|ref|YP_701411.1| hypothetical protein RHA1_ro01435 [Rhodococcus jostii RHA1]
gi|110817969|gb|ABG93253.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=224
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 140/210 (67%), Gaps = 8/210 (3%)
Query 26 PTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPL 85
P + +P W+ I TF LLY++E++D S RL+ NG+ P DGLWG++FAP+
Sbjct 21 PAPASKSKPLWLQSAILIGTFTMLLYVIEIVDVASDERLEENGVGPRSIDGLWGILFAPV 80
Query 86 LHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDH 145
LH +W HL ANT+PLLVLGFL+ L+G++R + AT I+W++G +G + ++H
Sbjct 81 LHDDWAHLFANTVPLLVLGFLVLLSGIARGLAATGIVWVVG-----GLGTWLTGGSYSNH 135
Query 146 IGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHL 205
IGAS LIFGWLA+LLV G+F R I++G+VV VYG +L G +P GVSWQGHL
Sbjct 136 IGASVLIFGWLAYLLVRGIFARSLGQILVGVVVFVVYGSLLWGVLP---SAPGVSWQGHL 192
Query 206 SGAVAGVVAAYLLSAPERKARALKRAGARS 235
GAV GVVAA+LLSA RK RA K G +S
Sbjct 193 FGAVGGVVAAWLLSADARKQRARKAVGPQS 222
>gi|134097798|ref|YP_001103459.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
gi|133910421|emb|CAM00534.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length=186
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/182 (49%), Positives = 121/182 (67%), Gaps = 9/182 (4%)
Query 43 ILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLV 102
+ VA L+ VEL+D+ + L+ NGI P DGL G+++APLLH W HL+AN++PLLV
Sbjct 1 MCVMVAALWAVELVDRALPADLESNGILPRSVDGLDGILWAPLLHGEWDHLVANSLPLLV 60
Query 103 LGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVF 162
LG+L G FV TA +WI+GG GTWL+G G HIGASG+ FGWL FLLV
Sbjct 61 LGWLAMSGGPRLFVAVTATVWIVGGFGTWLVGAGGV------HIGASGVAFGWLVFLLVR 114
Query 163 GLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPE 222
G F+R + + L++ F +GG+L G +P GQ G+SW+GHL GA+ G++AA+L+S
Sbjct 115 GFFLRSYGQMFVALLLFFYWGGMLWGVLP--GQA-GISWEGHLFGALGGLLAAWLVSRRG 171
Query 223 RK 224
R+
Sbjct 172 RR 173
>gi|291005566|ref|ZP_06563539.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length=183
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/178 (50%), Positives = 120/178 (68%), Gaps = 9/178 (5%)
Query 47 VALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFL 106
VA L+ VEL+D+ + L+ NGI P DGL G+++APLLH W HL+AN++PLLVLG+L
Sbjct 2 VAALWAVELVDRALPADLESNGILPRSVDGLDGILWAPLLHGEWDHLVANSLPLLVLGWL 61
Query 107 MTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFV 166
G FV TA +WI+GG GTWL+G G HIGASG+ FGWL FLLV G F+
Sbjct 62 AMSGGPRLFVAVTATVWIVGGFGTWLVGAGGV------HIGASGVAFGWLVFLLVRGFFL 115
Query 167 RKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERK 224
R + + L++ F +GG+L G +P GQ G+SW+GHL GA+ G++AA+L+S R+
Sbjct 116 RSYGQMFVALLLFFYWGGMLWGVLP--GQA-GISWEGHLFGALGGLLAAWLVSRRGRR 170
>gi|257056888|ref|YP_003134720.1| membrane protein [Saccharomonospora viridis DSM 43017]
gi|256586760|gb|ACU97893.1| uncharacterized membrane protein [Saccharomonospora viridis DSM
43017]
Length=192
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/187 (48%), Positives = 120/187 (65%), Gaps = 8/187 (4%)
Query 44 LTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVL 103
++FV LLYLVELID L LD GI DGL G+++APLLHA+W HL ANT P++V
Sbjct 14 ISFVTLLYLVELIDVLLPVNLDGYGIVARSFDGLDGIVWAPLLHADWQHLFANTGPVVVF 73
Query 104 GFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFG 163
FL G+ +++ TA IW++GGLG WL ++ T +GASGL FGWLAFLLV G
Sbjct 74 AFLAMAGGIGQWLMVTATIWLIGGLGVWL-----TAPDLTVTVGASGLAFGWLAFLLVRG 128
Query 164 LFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPER 223
+F R + + V+L ++GG+L G P GVSWQGHL GA+ GV+AA+L++ +R
Sbjct 129 VFSRSIAQLAVAFVLLALWGGMLWGVFP---GTPGVSWQGHLFGALGGVLAAWLVARADR 185
Query 224 KARALKR 230
A+
Sbjct 186 SRSAVSS 192
>gi|302529723|ref|ZP_07282065.1| rhomboid family protein [Streptomyces sp. AA4]
gi|302438618|gb|EFL10434.1| rhomboid family protein [Streptomyces sp. AA4]
Length=227
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/180 (50%), Positives = 116/180 (65%), Gaps = 8/180 (4%)
Query 44 LTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVL 103
L FVA+LYLVEL+D L GI + L G+++APLLHA W HL +NT+P+LV
Sbjct 40 LGFVAVLYLVELLDVLLPGDFTHGGILSREASSLDGILWAPLLHAGWSHLFSNTVPVLVF 99
Query 104 GFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFG 163
FL AG+ RF TAIIW++ GLG WL+G + +GASGL FGWLA+LLV G
Sbjct 100 SFLAMAAGIVRFAVVTAIIWLVSGLGVWLVGPSNAYT-----VGASGLAFGWLAYLLVRG 154
Query 164 LFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPER 223
LF R I + LV+L ++ G+L G +P G+SWQGHL GA+AG++AA+L S ER
Sbjct 155 LFHRSLAQIAVALVLLGIWSGMLWGLLP---GNPGISWQGHLFGALAGILAAWLTSRGER 211
>gi|254422281|ref|ZP_05035999.1| peptidase, S54 (rhomboid) family [Synechococcus sp. PCC 7335]
gi|196189770|gb|EDX84734.1| peptidase, S54 (rhomboid) family [Synechococcus sp. PCC 7335]
Length=189
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/181 (47%), Positives = 116/181 (65%), Gaps = 10/181 (5%)
Query 47 VALLYLVELIDQLSGS-RLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGF 105
V LL+ +E++DQ+ L+ GIRP GL+G+ FAP LH N+ HL+ANT+PL+ LG+
Sbjct 16 VVLLWAIEIVDQVVFRGALNNFGIRPRSLPGLFGIFFAPFLHGNFAHLIANTVPLVSLGW 75
Query 106 LMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLF 165
L+ L F+W + I I+GG GTWLIG+ P HIGASG+IFG+ FLL+ G F
Sbjct 76 LIMLRETEDFIWVSIISAIVGGFGTWLIGS------PASHIGASGVIFGYFGFLLLRGYF 129
Query 166 VRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKA 225
R I L+V F+YGGI+ G +P GVSW+GHL G + GV+AA LLS P++ +
Sbjct 130 ERSAVAIAFSLLVAFLYGGIIWGVLP---TQPGVSWEGHLFGFLGGVLAARLLSRPKQPS 186
Query 226 R 226
Sbjct 187 N 187
>gi|311741209|ref|ZP_07715033.1| rhomboid family protein [Corynebacterium pseudogenitalium ATCC
33035]
gi|311303379|gb|EFQ79458.1| rhomboid family protein [Corynebacterium pseudogenitalium ATCC
33035]
Length=217
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/214 (41%), Positives = 132/214 (62%), Gaps = 11/214 (5%)
Query 19 PTGR-PRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQ-LSGSRLDVNGIRPLKTDG 76
PTG+ R + T+ R G + F+ + + V +I+ L G +L GIRPL +G
Sbjct 13 PTGQVNRGDSKNYTRSGRITTGFSIAFGFLVVEWAVHIINAFLFGGQLSNYGIRPLDFNG 72
Query 77 LWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNV 136
+WG++ APLLHAN+ HLM+N++P + FL+ L+G + T I ++ GLGTW IG
Sbjct 73 IWGIVTAPLLHANFEHLMSNSVPGAIFCFLIGLSGRKAWWEVTLITTLVAGLGTWFIGGP 132
Query 137 GSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQC 196
G+S HIGAS L++GWLA+L+V G+F R ++G+V+ F Y G++ G +PV
Sbjct 133 GTS-----HIGASSLVYGWLAYLIVRGIFNRSLIQTILGIVLGFAYSGLVWGVLPVY--- 184
Query 197 GGVSWQGHLSGAVAGVVAAYLLSAPERKARALKR 230
GVSWQGHL GA+ G++A +++ + +A+KR
Sbjct 185 EGVSWQGHLFGAIGGILAGMTITS-DDPVKAVKR 217
>gi|311742468|ref|ZP_07716277.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314096|gb|EFQ84004.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length=196
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/185 (52%), Positives = 130/185 (71%), Gaps = 8/185 (4%)
Query 41 TTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPL 100
I FVA+LY++EL+D L G LD G+RP +GL G++FAP+LH W HL+ANT+PL
Sbjct 16 AVIAAFVAVLYVIELVDTLLGGSLDDFGVRPRSDEGLLGIVFAPVLHVGWGHLVANTLPL 75
Query 101 LVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLL 160
+VLGFL+ L+GL +V TA++W++GGLGTW++G GS+ T H+GAS L+FGWL L+
Sbjct 76 VVLGFLLLLSGLRTWVAVTAVVWLVGGLGTWVVG--GSN---TIHLGASVLVFGWLVHLV 130
Query 161 VFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSA 220
V G+F R I+IG+ VL VYGG+L GA+P GVSW+GHL G V G +AA+LL+
Sbjct 131 VRGVFTRSVGQILIGVGVLLVYGGVLWGALP---GTPGVSWEGHLFGGVGGALAAWLLAP 187
Query 221 PERKA 225
A
Sbjct 188 RSDPA 192
>gi|255324316|ref|ZP_05365437.1| putative membrane protein [Corynebacterium tuberculostearicum
SK141]
gi|255298646|gb|EET77942.1| putative membrane protein [Corynebacterium tuberculostearicum
SK141]
Length=217
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/225 (40%), Positives = 133/225 (60%), Gaps = 16/225 (7%)
Query 7 RKRRGGAVQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQ-LSGSRLD 65
R AVQ+ R + T+ R G + F+ + + V +I+ L G +L
Sbjct 8 NYRPAPAVQVNRGDSK------NYTRSGRITTGFSIAFGFLVVEWAVHIINAFLFGGQLS 61
Query 66 VNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWIL 125
GIRPL +G+WG++ APLLHAN+ HLM+N++P + FL+ L+G + T I ++
Sbjct 62 NYGIRPLDFNGIWGIVTAPLLHANFEHLMSNSVPGAIFCFLIGLSGRKAWWEVTLITTLV 121
Query 126 GGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGI 185
GLGTW IG G+S HIGAS L++GWLA+L+V G+F R V+G+V+ F Y G+
Sbjct 122 AGLGTWFIGGPGTS-----HIGASSLVYGWLAYLIVRGVFNRSLIQTVLGIVLGFAYSGL 176
Query 186 LLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAPERKARALKR 230
+ G +PV GVSWQGHL GA+ G++A +++ + +A+KR
Sbjct 177 VWGVLPVY---EGVSWQGHLFGAIGGILAGMTITS-DDPVKAVKR 217
>gi|182437996|ref|YP_001825715.1| hypothetical protein SGR_4203 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326778646|ref|ZP_08237911.1| Peptidase S54, rhomboid domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178466512|dbj|BAG21032.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326658979|gb|EGE43825.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length=208
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/205 (43%), Positives = 117/205 (58%), Gaps = 8/205 (3%)
Query 24 RTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFA 83
RT TT R + G + +VALL+++E ID +G+ LD GI P + L V+ A
Sbjct 9 RTTRNGTTGGARALTAGLLMAGWVALLWILEGIDTATGNALDTYGISPREAAELRDVVPA 68
Query 84 PLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPT 143
LH+ W HL +N++PLLVLGF+ LAGL RF I ++ GLG WL ++ T
Sbjct 69 AFLHSGWEHLASNSVPLLVLGFIAALAGLRRFAAVVVTIILVSGLGVWL-----TAPANT 123
Query 144 DHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQG 203
+GASG++FG +LLV G R+ WD++IG+ V VYG +L G +P GVSWQG
Sbjct 124 ITLGASGVVFGLFGYLLVRGFVDRRPWDVLIGVGVAVVYGSLLWGVLP---TATGVSWQG 180
Query 204 HLSGAVAGVVAAYLLSAPERKARAL 228
HL G GV AA+L P R L
Sbjct 181 HLFGLAGGVAAAFLFRRPRRAPDNL 205
>gi|331695365|ref|YP_004331604.1| peptidase S54, rhomboid domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326950054|gb|AEA23751.1| Peptidase S54, rhomboid domain protein [Pseudonocardia dioxanivorans
CB1190]
Length=190
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/163 (49%), Positives = 104/163 (64%), Gaps = 8/163 (4%)
Query 42 TILTFVALLYLVELIDQLSGSRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLL 101
T+L F +LYL+EL+DQL+ LD +GI GL G+I+APLLH W HL ANTIP L
Sbjct 6 TMLAFTVVLYLIELVDQLTPLHLDDDGIHSRSVSGLTGIIWAPLLHGGWAHLAANTIPFL 65
Query 102 VLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLV 161
V GFL+ G+ +FV TA+IW++ GLG WL+G +S IG SG+IFGWL FLLV
Sbjct 66 VFGFLVMAGGIGQFVAVTALIWVVSGLGVWLLGPSNTST-----IGMSGVIFGWLVFLLV 120
Query 162 FGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGH 204
G F R I + +V+ V+G +LLG +P + +SWQ H
Sbjct 121 RGFFARSLAQIAVAVVLFAVWGSVLLGVIPGRPE---ISWQAH 160
>gi|324997297|ref|ZP_08118409.1| hypothetical protein PseP1_00969 [Pseudonocardia sp. P1]
Length=194
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/184 (46%), Positives = 113/184 (62%), Gaps = 11/184 (5%)
Query 43 ILTFVALLYLVELIDQLSGSRLDVNG-IRPLKTDGLWGVIFAPLLHANWHHLMANTIPLL 101
+L F A LY+VE +D S ++ G I P TDGL G++ APLLH +W HL+ANT+P L
Sbjct 15 MLLFTAALYIVETVDSASDGMVERAGAIYPRDTDGLAGILTAPLLHGDWAHLVANTVPFL 74
Query 102 VLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLV 161
V GFL G+ ++ TA IW++ G+G WLI P IGAS ++FGW FLLV
Sbjct 75 VFGFLAMSGGVGQWFVVTATIWVVSGVGVWLI-------SPLPVIGASSIVFGWFLFLLV 127
Query 162 FGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSAP 221
G + R G I++ +V+ V+G +L G +P VSWQGHL GAV GVVAA ++
Sbjct 128 RGFYARNGRQILLAVVLFLVWGSLLWGVLP---SDPMVSWQGHLFGAVGGVVAASWVAKA 184
Query 222 ERKA 225
+R+A
Sbjct 185 DRRA 188
>gi|227833924|ref|YP_002835631.1| hypothetical protein cauri_2100 [Corynebacterium aurimucosum
ATCC 700975]
gi|227454940|gb|ACP33693.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=240
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/235 (37%), Positives = 137/235 (59%), Gaps = 15/235 (6%)
Query 3 MTPRRKRRGGAVQITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLS-G 61
PR G Q TG + T+ R + + F+A+ +++ +I+ L G
Sbjct 18 FQPRPASPGAGQQPVLNTGDSK----NYTRTGRLKTAASLTVGFLAVEWIIHIINFLFFG 73
Query 62 SRLDVNGIRPLKTDGLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAI 121
S L GIRPL +G+WG+ APLLHAN+ HL+ N++P V FL+ L+G + T I
Sbjct 74 SELGQYGIRPLDFNGIWGIFTAPLLHANFEHLIGNSLPGAVFCFLIGLSGRKAWWEVTII 133
Query 122 IWILGGLGTWLIGNVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFV 181
+ ++ G+GTWL+G G+S HIGASG+++GWLA+L+V G+F R ++G+ + F
Sbjct 134 VVLIAGIGTWLLGGPGTS-----HIGASGMVYGWLAYLIVRGIFNRSLGQFLVGVGLGFA 188
Query 182 YGGILLGAMPVLGQCGGVSWQGHLSGAVAGVVAAYLLSA--PERKARALKRAGAR 234
Y G++ G +P+ GVSWQGHL GA+ G+VA ++++ P +K ++ + R
Sbjct 189 YSGLIWGVLPIY---EGVSWQGHLFGAIGGIVAGMVITSDDPIKKVKSEPQGVVR 240
>gi|262201907|ref|YP_003273115.1| rhomboid family protein [Gordonia bronchialis DSM 43247]
gi|262085254|gb|ACY21222.1| Rhomboid family protein [Gordonia bronchialis DSM 43247]
Length=209
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/203 (45%), Positives = 120/203 (60%), Gaps = 12/203 (5%)
Query 16 ITRPTGRPRTPTTQTTKRPRWVVGGTTILTFVALLYLVELIDQLSGSRLDVNGIRPLKTD 75
+T P + P T +P W+ + VA L+++E ID + RLD NGI P + D
Sbjct 1 MTYPAPNQQAPAP--TGKPLWLRSVIITVCIVAGLFIIEAIDAATRFRLDDNGIEPRQID 58
Query 76 GLWGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIWILGGLGTWLIGN 135
GL G+I+APLLHA+W HL AN IP +VL FL+ L V T I+W++ GLG WL
Sbjct 59 GLDGIIWAPLLHADWAHLFANLIPGVVLCFLLLLTRRFLIV--TGIVWVVSGLGVWLFAP 116
Query 136 VGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWDIVIGLVVLFVYGGILLGAMPVLGQ 195
S +GASG+IFGWL FLL+ GLF R W I+ G+V+ +YG IL G +P
Sbjct 117 PYSIT-----VGASGIIFGWLTFLLIRGLFNRDLWQILGGVVLFLIYGSILWGVLP---S 168
Query 196 CGGVSWQGHLSGAVAGVVAAYLL 218
VSWQ HL GA+ GV+AA+ L
Sbjct 169 NPTVSWQAHLFGAIGGVLAAWFL 191
Lambda K H
0.326 0.144 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 332206503090
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40