BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1340
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium... 520 1e-145
gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacter... 519 1e-145
gi|15608480|ref|NP_215856.1| ribonuclease PH [Mycobacterium tube... 518 3e-145
gi|340626356|ref|YP_004744808.1| putative ribonuclease RPHA [Myc... 516 1e-144
gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovi... 516 1e-144
gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium... 514 4e-144
gi|240170903|ref|ZP_04749562.1| ribonuclease PH [Mycobacterium k... 487 9e-136
gi|41408520|ref|NP_961356.1| ribonuclease PH [Mycobacterium aviu... 483 1e-134
gi|118462847|ref|YP_880792.1| ribonuclease PH [Mycobacterium avi... 481 4e-134
gi|342858003|ref|ZP_08714659.1| ribonuclease PH [Mycobacterium c... 479 2e-133
gi|296170279|ref|ZP_06851870.1| tRNA nucleotidyltransferase [Myc... 477 9e-133
gi|15827593|ref|NP_301856.1| ribonuclease PH [Mycobacterium lepr... 468 4e-130
gi|183984013|ref|YP_001852304.1| ribonuclease RphA [Mycobacteriu... 462 2e-128
gi|118619118|ref|YP_907450.1| ribonuclease PH [Mycobacterium ulc... 454 6e-126
gi|254819170|ref|ZP_05224171.1| ribonuclease PH [Mycobacterium i... 447 9e-124
gi|120405241|ref|YP_955070.1| ribonuclease PH [Mycobacterium van... 446 1e-123
gi|333989983|ref|YP_004522597.1| ribonuclease RphA [Mycobacteriu... 441 5e-122
gi|312139208|ref|YP_004006544.1| ribonuclease ph rpha [Rhodococc... 427 6e-118
gi|118467865|ref|YP_889156.1| ribonuclease PH [Mycobacterium sme... 426 2e-117
gi|54023062|ref|YP_117304.1| ribonuclease PH [Nocardia farcinica... 424 7e-117
gi|226307366|ref|YP_002767326.1| ribonuclease PH [Rhodococcus er... 422 4e-116
gi|169628575|ref|YP_001702224.1| ribonuclease PH [Mycobacterium ... 417 9e-115
gi|145222946|ref|YP_001133624.1| ribonuclease PH [Mycobacterium ... 417 1e-114
gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella p... 415 3e-114
gi|226360555|ref|YP_002778333.1| ribonuclease PH [Rhodococcus op... 415 3e-114
gi|111018437|ref|YP_701409.1| ribonuclease PH [Rhodococcus josti... 414 5e-114
gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofel... 410 8e-113
gi|317508770|ref|ZP_07966420.1| ribonuclease PH [Segniliparus ru... 410 1e-112
gi|343924692|ref|ZP_08764234.1| ribonuclease PH [Gordonia alkani... 404 7e-111
gi|296393943|ref|YP_003658827.1| ribonuclease PH [Segniliparus r... 404 9e-111
gi|333921282|ref|YP_004494863.1| ribonuclease PH [Amycolicicoccu... 403 1e-110
gi|262201910|ref|YP_003273118.1| ribonuclease PH [Gordonia bronc... 403 1e-110
gi|256375162|ref|YP_003098822.1| ribonuclease PH [Actinosynnema ... 400 1e-109
gi|108800808|ref|YP_641005.1| ribonuclease PH [Mycobacterium sp.... 399 2e-109
gi|331695372|ref|YP_004331611.1| Ribonuclease PH [Pseudonocardia... 392 2e-107
gi|134097802|ref|YP_001103463.1| ribonuclease PH [Saccharopolysp... 391 6e-107
gi|291005562|ref|ZP_06563535.1| ribonuclease PH [Saccharopolyspo... 378 4e-103
gi|300789523|ref|YP_003769814.1| ribonuclease PH [Amycolatopsis ... 378 6e-103
gi|302529720|ref|ZP_07282062.1| ribonuclease PH [Streptomyces sp... 376 2e-102
gi|257056884|ref|YP_003134716.1| ribonuclease PH [Saccharomonosp... 372 4e-101
gi|258651924|ref|YP_003201080.1| ribonuclease PH [Nakamurella mu... 360 1e-97
gi|324997302|ref|ZP_08118414.1| ribonuclease PH [Pseudonocardia ... 357 1e-96
gi|319948537|ref|ZP_08022668.1| ribonuclease PH [Dietzia cinname... 347 9e-94
gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacteriu... 326 2e-87
gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium... 321 7e-86
gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Cor... 315 4e-84
gi|238063132|ref|ZP_04607841.1| ribonuclease PH [Micromonospora ... 315 5e-84
gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium je... 314 9e-84
gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Cor... 313 2e-83
gi|336324996|ref|YP_004604962.1| ribonuclease PH [Corynebacteriu... 311 5e-83
>gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
Length=296
Score = 520 bits (1338), Expect = 1e-145, Method: Compositional matrix adjust.
Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW
Sbjct 38 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 97
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV
Sbjct 98 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 157
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 158 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 217
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA
Sbjct 218 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 277
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLPQGPPPPKAFGT
Sbjct 278 LPYPGVLPQGPPPPKAFGT 296
>gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase
Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium
Target Rv1340
gi|160877893|pdb|3B4T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rnase
Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium
Target Rv1340
gi|160877894|pdb|3B4T|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Rnase
Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium
Target Rv1340
gi|160877895|pdb|3B4T|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Rnase
Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium
Target Rv1340
gi|160877896|pdb|3B4T|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Rnase
Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium
Target Rv1340
gi|160877897|pdb|3B4T|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Rnase
Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium
Target Rv1340
Length=262
Score = 519 bits (1337), Expect = 1e-145, Method: Compositional matrix adjust.
Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW
Sbjct 4 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 63
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV
Sbjct 64 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 123
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 124 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 183
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA
Sbjct 184 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 243
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLPQGPPPPKAFGT
Sbjct 244 LPYPGVLPQGPPPPKAFGT 262
>gi|15608480|ref|NP_215856.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv]
gi|15840795|ref|NP_335832.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
gi|121637271|ref|YP_977494.1| ribonuclease PH [Mycobacterium bovis BCG str. Pasteur 1173P2]
72 more sequence titles
Length=259
Score = 518 bits (1334), Expect = 3e-145, Method: Compositional matrix adjust.
Identities = 258/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW
Sbjct 1 MSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV
Sbjct 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLPQGPPPPKAFGT
Sbjct 241 LPYPGVLPQGPPPPKAFGT 259
>gi|340626356|ref|YP_004744808.1| putative ribonuclease RPHA [Mycobacterium canettii CIPT 140010059]
gi|340004546|emb|CCC43690.1| putative ribonuclease RPHA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium canettii CIPT 140010059]
Length=259
Score = 516 bits (1330), Expect = 1e-144, Method: Compositional matrix adjust.
Identities = 257/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+S+REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW
Sbjct 1 MSEREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV
Sbjct 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLPQGPPPPKAFGT
Sbjct 241 LPYPGVLPQGPPPPKAFGT 259
>gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovis AF2122/97]
gi|59798839|sp|Q7U076.1|RNPH_MYCBO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|31618125|emb|CAD94236.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium bovis AF2122/97]
Length=259
Score = 516 bits (1329), Expect = 1e-144, Method: Compositional matrix adjust.
Identities = 257/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW
Sbjct 1 MSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLI RSLRACIDLAALGENTIAIDCDV
Sbjct 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLISRSLRACIDLAALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLPQGPPPPKAFGT
Sbjct 241 LPYPGVLPQGPPPPKAFGT 259
>gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
gi|339631409|ref|YP_004723051.1| ribonuclease PH [Mycobacterium africanum GM041182]
gi|289538437|gb|EFD43015.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
gi|339330765|emb|CCC26436.1| putative ribonuclease RPHA (RNase PH) (tRNA nucleotidyltransferase)
[Mycobacterium africanum GM041182]
Length=259
Score = 514 bits (1324), Expect = 4e-144, Method: Compositional matrix adjust.
Identities = 257/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW
Sbjct 1 MSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV
Sbjct 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDS AEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA
Sbjct 181 EEDSPAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLPQGPPPPKAFGT
Sbjct 241 LPYPGVLPQGPPPPKAFGT 259
>gi|240170903|ref|ZP_04749562.1| ribonuclease PH [Mycobacterium kansasii ATCC 12478]
Length=259
Score = 487 bits (1253), Expect = 9e-136, Method: Compositional matrix adjust.
Identities = 238/259 (92%), Positives = 252/259 (98%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+SKREDGRLD ELRPV+ITRGFTENPAGSVLIEFG TKVLCTASVTEGVPRWRK +G+GW
Sbjct 1 MSKREDGRLDDELRPVVITRGFTENPAGSVLIEFGRTKVLCTASVTEGVPRWRKGSGVGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RSDRESV+GR+ GRTQEISRL+GRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYL+AAGKLSDPRPLSCAIAA+SVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLAAAGKLSDPRPLSCAIAAISVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDKLLDMALGACD LFAAQR+ALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFAAQREALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLP+GPP PKAFG+
Sbjct 241 LPYPGVLPEGPPAPKAFGS 259
>gi|41408520|ref|NP_961356.1| ribonuclease PH [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254774377|ref|ZP_05215893.1| ribonuclease PH [Mycobacterium avium subsp. avium ATCC 25291]
gi|61215988|sp|Q73X87.1|RNPH_MYCPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|41396876|gb|AAS04739.1| RphA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336460956|gb|EGO39837.1| ribonuclease PH [Mycobacterium avium subsp. paratuberculosis
S397]
Length=259
Score = 483 bits (1243), Expect = 1e-134, Method: Compositional matrix adjust.
Identities = 235/259 (91%), Positives = 252/259 (98%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+++REDGRLD ELRP++ITRGFTE+PAGSVLIEFGHTKV+CTASVTEGVPRWRK +GLGW
Sbjct 1 MTRREDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RSDRESV+GRLSGRTQEISRLIGRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGA+VALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAFVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EED+RAEVDMNVVATDTGTLVE+QGTGEGATF RSTLDKLLD AL ACD LFAAQR+AL
Sbjct 181 EEDARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREALK 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLP+GPPPPKAFG+
Sbjct 241 LPYPGVLPEGPPPPKAFGS 259
>gi|118462847|ref|YP_880792.1| ribonuclease PH [Mycobacterium avium 104]
gi|166228290|sp|A0QD04.1|RNPH_MYCA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|118164134|gb|ABK65031.1| ribonuclease PH [Mycobacterium avium 104]
Length=259
Score = 481 bits (1238), Expect = 4e-134, Method: Compositional matrix adjust.
Identities = 234/259 (91%), Positives = 251/259 (97%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+++REDGRLD ELRP++ITRGFTE+PAGSVLIEFGHTKV+CTASVTEGVPRWRK +GLGW
Sbjct 1 MTRREDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RSDRESV+GRLSGRTQEISRLIGRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGA+VALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAFVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EED+RAEVDMNVVATDTGTLVE+QGTGEGATF RSTLDKLLD AL ACD LFAAQR+AL
Sbjct 181 EEDARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREALK 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLP+GPPPPK FG+
Sbjct 241 LPYPGVLPEGPPPPKVFGS 259
>gi|342858003|ref|ZP_08714659.1| ribonuclease PH [Mycobacterium colombiense CECT 3035]
gi|342135336|gb|EGT88502.1| ribonuclease PH [Mycobacterium colombiense CECT 3035]
Length=259
Score = 479 bits (1232), Expect = 2e-133, Method: Compositional matrix adjust.
Identities = 233/259 (90%), Positives = 252/259 (98%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+++REDGRLD ELRPV+ITRGFT++PAGSVLIEFGHTKV+CTASVTEGVPRWRK +GLGW
Sbjct 1 MTRREDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RSDRESV+GRLSGRTQEISRLIGRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGA+VAL+DAVTYL+AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAFVALSDAVTYLAAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVE+QGTGEGATF RSTLDKLLD+AL ACD LFAAQR+ALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLP+G P PKAFG+
Sbjct 241 LPYPGVLPEGAPAPKAFGS 259
>gi|296170279|ref|ZP_06851870.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895002|gb|EFG74721.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=259
Score = 477 bits (1227), Expect = 9e-133, Method: Compositional matrix adjust.
Identities = 232/259 (90%), Positives = 252/259 (98%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+++REDGRLD ELRPV+ITRGFT++PAGSVLIEFGHTKV+CTASVT+GVPRWRK +GLGW
Sbjct 1 MTRREDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTDGVPRWRKGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RSDRESV+GRLSGRTQEISRLIGRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGA+VALADAVTYL+AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAFVALADAVTYLAAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EED+RAEVDMNVVATDTGTLVE+QGTGEGATF RSTLDKLLD+AL ACD LFAAQR+ALA
Sbjct 181 EEDARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPG LP+G PPPKAFG+
Sbjct 241 LPYPGELPEGAPPPKAFGS 259
>gi|15827593|ref|NP_301856.1| ribonuclease PH [Mycobacterium leprae TN]
gi|221230070|ref|YP_002503486.1| ribonuclease PH [Mycobacterium leprae Br4923]
gi|585906|sp|P37939.1|RNPH_MYCLE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808596|sp|B8ZR59.1|RNPH_MYCLB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|466905|gb|AAA50880.1| rnpH [Mycobacterium leprae]
gi|13093144|emb|CAC31555.1| ribonuclease PH [Mycobacterium leprae]
gi|219933177|emb|CAR71269.1| ribonuclease PH [Mycobacterium leprae Br4923]
Length=259
Score = 468 bits (1204), Expect = 4e-130, Method: Compositional matrix adjust.
Identities = 230/259 (89%), Positives = 245/259 (95%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+S R DGRLD ELR V+ITRGFTE+PAGSVLIEFGHTKV+CTAS TEGVPRWRK +G GW
Sbjct 1 MSTRADGRLDDELRAVVITRGFTEHPAGSVLIEFGHTKVMCTASPTEGVPRWRKGSGKGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RS+RESV+GRLSGRTQEISRLIGRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYAMLPSATHTRSERESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAA+TGAYVALADAVTYLSAAG+L DPRPLSCAIAAVSVGVVDGRIRVDL Y
Sbjct 121 LQADGGTRTAAVTGAYVALADAVTYLSAAGRLLDPRPLSCAIAAVSVGVVDGRIRVDLSY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNV+ATDTGTLVEIQGTGEGATF RSTLDKLLDMALGACD LF AQRDALA
Sbjct 181 EEDSRAEVDMNVIATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFVAQRDALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPY G+ P+GPPPPKAFG+
Sbjct 241 LPYQGMSPEGPPPPKAFGS 259
>gi|183984013|ref|YP_001852304.1| ribonuclease RphA [Mycobacterium marinum M]
gi|183177339|gb|ACC42449.1| ribonuclease RphA [Mycobacterium marinum M]
Length=276
Score = 462 bits (1189), Expect = 2e-128, Method: Compositional matrix adjust.
Identities = 238/259 (92%), Positives = 251/259 (97%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
VSKREDGR D ELRPV+ITRGFTENPAGSVLIEFG TKV+CTASVTEGVPRWRK +GLGW
Sbjct 18 VSKREDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVPRWRKGSGLGW 77
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RSDRESV+GR+ GRTQEISRL+GRSLRACIDLAALGENTIA+DCDV
Sbjct 78 LTAEYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDV 137
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAV YL+AAGKLSDPRPLSCAIAAVSVGVVDGR+RVDLPY
Sbjct 138 LQADGGTRTAAITGAYVALADAVNYLAAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPY 197
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVE+QGTGEGATF RSTLDKLLDMALGACDTLFAAQRDALA
Sbjct 198 EEDSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQRDALA 257
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLP+GPPP KAFG+
Sbjct 258 LPYPGVLPEGPPPSKAFGS 276
>gi|118619118|ref|YP_907450.1| ribonuclease PH [Mycobacterium ulcerans Agy99]
gi|166228296|sp|A0PUG0.1|RNPH_MYCUA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|118571228|gb|ABL05979.1| ribonuclease RphA [Mycobacterium ulcerans Agy99]
Length=259
Score = 454 bits (1168), Expect = 6e-126, Method: Compositional matrix adjust.
Identities = 235/259 (91%), Positives = 249/259 (97%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+SKREDGR D ELRPV+ITRGFTENPAGSVLIEFG TKV+CTASVTEGV RWRK +GLGW
Sbjct 1 MSKREDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVSRWRKGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RSDRESV+GR+ GRTQEISRL+GRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAV YL+AAGKLSDPRPLSCAIAAVSVGVVDGR+RVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVNYLAAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVE+QGTGEGATF RSTLDKLLDMALGACDTLFAAQ DALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQCDALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLP+GPPP KAFG+
Sbjct 241 LPYPGVLPEGPPPSKAFGS 259
>gi|254819170|ref|ZP_05224171.1| ribonuclease PH [Mycobacterium intracellulare ATCC 13950]
Length=259
Score = 447 bits (1149), Expect = 9e-124, Method: Compositional matrix adjust.
Identities = 230/259 (89%), Positives = 249/259 (97%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+++REDGRLD ELRPV+ITRGFT++PAGSVLIEFGHTKV+CTASVTEGVPRWRK +GLGW
Sbjct 1 MTRREDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RSDRESV+GRLSGRTQEISRLIGRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGA+VALADAVTYL AAGKLSDPRPLSCAIAAVSVGVVDGR+RVDLPY
Sbjct 121 LQADGGTRTAAITGAFVALADAVTYLGAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EED+RAEVDMNVVATDTGTLVE+QGTGEGATF RSTLDKLLD+AL ACD LFAAQR+ALA
Sbjct 181 EEDARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
PYPG LP+G P PKAFG+
Sbjct 241 QPYPGELPEGAPAPKAFGS 259
>gi|120405241|ref|YP_955070.1| ribonuclease PH [Mycobacterium vanbaalenii PYR-1]
gi|166228297|sp|A1TD14.1|RNPH_MYCVP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|119958059|gb|ABM15064.1| RNAse PH [Mycobacterium vanbaalenii PYR-1]
Length=260
Score = 446 bits (1148), Expect = 1e-123, Method: Compositional matrix adjust.
Identities = 222/260 (86%), Positives = 238/260 (92%), Gaps = 1/260 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+S+REDGRLD ELRPV ITRGFT +PAGSVL+EFG T+V+CTASVTEGVPRWRK +G GW
Sbjct 1 MSRREDGRLDDELRPVTITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH RS RESV+GR+ GRTQEISRL+GRSLRACIDLAALGENTIAIDCDV
Sbjct 61 LTAEYAMLPAATHERSGRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYL+AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLAAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDK+LD A+ ACD LF QR AL
Sbjct 181 TEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALE 240
Query 241 LPYPGVLPQ-GPPPPKAFGT 259
LPYPGVLP+ G P KAFG+
Sbjct 241 LPYPGVLPEPGEPAKKAFGS 260
>gi|333989983|ref|YP_004522597.1| ribonuclease RphA [Mycobacterium sp. JDM601]
gi|333485951|gb|AEF35343.1| ribonuclease RphA [Mycobacterium sp. JDM601]
Length=260
Score = 441 bits (1134), Expect = 5e-122, Method: Compositional matrix adjust.
Identities = 226/259 (88%), Positives = 245/259 (95%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+SKREDGRLD ELRPV+ITRGFT NPAGSVL+EFG T+V+CTASVTEGVPRWRK +G GW
Sbjct 1 MSKREDGRLDDELRPVVITRGFTSNPAGSVLVEFGDTRVMCTASVTEGVPRWRKGSGRGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH+RSDRESVRG++ GRTQEISRL+GRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYAMLPAATHTRSDRESVRGKVGGRTQEISRLVGRSLRACIDLAALGENTIALDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAI+AVSVGVVDGR+RVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAISAVSVGVVDGRVRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDK+LD AL AC+ LF QR+ALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAALSACEKLFVVQREALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLP+GP P KAFG+
Sbjct 241 LPYPGVLPEGPAPKKAFGS 259
>gi|312139208|ref|YP_004006544.1| ribonuclease ph rpha [Rhodococcus equi 103S]
gi|325673486|ref|ZP_08153177.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
gi|311888547|emb|CBH47859.1| ribonuclease PH RphA [Rhodococcus equi 103S]
gi|325555507|gb|EGD25178.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
Length=260
Score = 427 bits (1099), Expect = 6e-118, Method: Compositional matrix adjust.
Identities = 210/260 (81%), Positives = 235/260 (91%), Gaps = 1/260 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
++ REDGR D ELR V ITRGFT +PAGSVL+EFG+T+V+CTASV EGVPRWRK +GLGW
Sbjct 1 MTTREDGRTDDELREVRITRGFTNHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH+RS RESV+G++ GRTQEISRL+GRSLRACIDLAA+GENTIAIDCDV
Sbjct 61 LTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVAL DAVTYL AAG+L+DP+P+SCAIAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTAAITGAYVALVDAVTYLRAAGRLADPQPISCAIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDKLLD AL C+ LFA Q+ ALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFAIQQAALA 240
Query 241 LPYPGVLPQG-PPPPKAFGT 259
PYPGVLP+ P KAFG+
Sbjct 241 EPYPGVLPEATEPKKKAFGS 260
>gi|118467865|ref|YP_889156.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
gi|166228292|sp|A0R1W8.1|RNPH_MYCS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|118169152|gb|ABK70048.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
Length=259
Score = 426 bits (1095), Expect = 2e-117, Method: Compositional matrix adjust.
Identities = 220/259 (85%), Positives = 241/259 (94%), Gaps = 0/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+S+REDGRLD ELRPV+ITRGFT +PAGSVL+EFG T+V+CTASVTEGVPRWRK +G GW
Sbjct 1 MSRREDGRLDDELRPVVITRGFTSHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH RSDRESV+GR+ GRTQEISRLIGRSLRACIDLAALGENTIAIDCDV
Sbjct 61 LTAEYAMLPAATHDRSDRESVKGRIGGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVAL+DAVT+L+AAG+LSDPRPLSCAIAAVSVGVVDGR+RVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALSDAVTWLAAAGRLSDPRPLSCAIAAVSVGVVDGRVRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDK+LD ALGA + LF QR+AL
Sbjct 181 SEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAALGATEQLFVLQREALD 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
PYPGVLP+GP P KAFG+
Sbjct 241 APYPGVLPEGPAPKKAFGS 259
>gi|54023062|ref|YP_117304.1| ribonuclease PH [Nocardia farcinica IFM 10152]
gi|61215825|sp|Q5Z0V1.1|RNPH_NOCFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|54014570|dbj|BAD55940.1| putative RNase PH [Nocardia farcinica IFM 10152]
Length=257
Score = 424 bits (1090), Expect = 7e-117, Method: Compositional matrix adjust.
Identities = 208/255 (82%), Positives = 232/255 (91%), Gaps = 0/255 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+S+R DGR D ELR V ITRGFT +PAGSVL+EFG T+V+CTASVTEGVP WR+ +GLGW
Sbjct 1 MSRRADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPAWRRDSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH+RS RESV+GR+ GRTQEISRL+GRSLRACIDLAA+GENTIAIDCDV
Sbjct 61 LTAEYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVT+L AAG L+DP+P+SCAIAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTWLGAAGALADPQPISCAIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDKLLD AL C+ LFA Q++ALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDAALAGCEQLFAVQKEALA 240
Query 241 LPYPGVLPQGPPPPK 255
LPYPGVLP+ P K
Sbjct 241 LPYPGVLPEPAEPAK 255
>gi|226307366|ref|YP_002767326.1| ribonuclease PH [Rhodococcus erythropolis PR4]
gi|229494008|ref|ZP_04387777.1| ribonuclease PH [Rhodococcus erythropolis SK121]
gi|259494126|sp|C1A1V2.1|RNPH_RHOE4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226186483|dbj|BAH34587.1| ribonuclease PH [Rhodococcus erythropolis PR4]
gi|229319077|gb|EEN84929.1| ribonuclease PH [Rhodococcus erythropolis SK121]
Length=261
Score = 422 bits (1084), Expect = 4e-116, Method: Compositional matrix adjust.
Identities = 208/260 (80%), Positives = 230/260 (89%), Gaps = 2/260 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
++ REDGR D ELR V ITRGFT +PAGSVL+EFG+T+V+CTASV EGVPRWRK +GLGW
Sbjct 1 MTTREDGRADDELRTVKITRGFTSHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH+RS RESV+G++ GRTQEISRLIGRSLRACIDLAA+GENTIA+DCDV
Sbjct 61 LTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLIGRSLRACIDLAAIGENTIALDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAA+TGAYVAL DAVTYL AA LSDP+P+SC IAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTAAVTGAYVALVDAVTYLRAADLLSDPQPISCGIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDKLLD AL C+ LF QR ALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQRQALA 240
Query 241 LPYPGVLPQ--GPPPPKAFG 258
PYPGVLP+ P P K FG
Sbjct 241 EPYPGVLPEPKNPEPKKKFG 260
>gi|169628575|ref|YP_001702224.1| ribonuclease PH [Mycobacterium abscessus ATCC 19977]
gi|226736919|sp|B1MLZ3.1|RNPH_MYCA9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|169240542|emb|CAM61570.1| Probable ribonuclease PH [Mycobacterium abscessus]
Length=258
Score = 417 bits (1071), Expect = 9e-115, Method: Compositional matrix adjust.
Identities = 218/259 (85%), Positives = 238/259 (92%), Gaps = 1/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+S+REDGR D ELRPV ITRGFT +PAGSVLIEFG T+V+CTAS TEGVPRWRK +GLGW
Sbjct 1 MSRREDGRQDDELRPVTITRGFTSHPAGSVLIEFGQTRVMCTASATEGVPRWRKGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP++TH+RSDRESV+GR+ GRTQEISRLIGRSLRACIDL+ALGENTIAIDCDV
Sbjct 61 LTAEYAMLPASTHTRSDRESVKGRVGGRTQEISRLIGRSLRACIDLSALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYL+A GKL+D PLSCAIAAVSVGVVDGR+RVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLAAHGKLADDEPLSCAIAAVSVGVVDGRVRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVE+QGTGEGATFARSTLDKLLD A+GA D LF Q++ALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEVQGTGEGATFARSTLDKLLDAAVGAADQLFVLQKEALA 240
Query 241 LPYPGVLPQGPPPPKAFGT 259
LPYPGVLP P KAFG+
Sbjct 241 LPYPGVLPDA-PQKKAFGS 258
>gi|145222946|ref|YP_001133624.1| ribonuclease PH [Mycobacterium gilvum PYR-GCK]
gi|315443409|ref|YP_004076288.1| RNAse PH [Mycobacterium sp. Spyr1]
gi|189043767|sp|A4T8F7.1|RNPH_MYCGI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145215432|gb|ABP44836.1| RNAse PH [Mycobacterium gilvum PYR-GCK]
gi|315261712|gb|ADT98453.1| RNAse PH [Mycobacterium sp. Spyr1]
Length=260
Score = 417 bits (1071), Expect = 1e-114, Method: Compositional matrix adjust.
Identities = 218/260 (84%), Positives = 236/260 (91%), Gaps = 1/260 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+S+REDGRLD ELRPV ITRGFT +PAGSVL+EFG T+V+CTASVTEGVPRWRK +G GW
Sbjct 1 MSRREDGRLDDELRPVTITRGFTTHPAGSVLVEFGETRVMCTASVTEGVPRWRKGSGQGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH RSDRESV+GR+ GRTQEISRL+GRSLRACIDLAALGENTIAIDCDV
Sbjct 61 LTAEYAMLPAATHDRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGA+VAL+DAVTYL AAGKLSDPRPLSCAIAAVSVGVVDGR+RVDLPY
Sbjct 121 LQADGGTRTAAITGAFVALSDAVTYLGAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDK+LD A+ ACD LF QR AL
Sbjct 181 TEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALE 240
Query 241 LPYPGVLPQ-GPPPPKAFGT 259
LPYPG LP+ P KAFG+
Sbjct 241 LPYPGTLPESAEPAKKAFGS 260
>gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
gi|296027153|gb|ADG77923.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
Length=260
Score = 415 bits (1067), Expect = 3e-114, Method: Compositional matrix adjust.
Identities = 205/259 (80%), Positives = 227/259 (88%), Gaps = 1/259 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+S+R DGR D ELRPV ITRGFT+NPAGSVL+EFG+TKVLCTASV GVP WR+ +G GW
Sbjct 1 MSRRADGRADDELRPVTITRGFTQNPAGSVLVEFGNTKVLCTASVELGVPGWRRGSGQGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP ATH RS RES +G++ GRT EISRLIGRSLRACIDLAALGENTIAIDCDV
Sbjct 61 LTAEYAMLPGATHERSRRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTA+ITGAYVAL DAVTYL AAGKL+DP+P+SCAIAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTASITGAYVALCDAVTYLGAAGKLTDPQPISCAIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVE+QGTGEGATFAR+TLD +LD AL + LFA Q+ ALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEVQGTGEGATFARTTLDWMLDSALSGTEKLFAVQKQALA 240
Query 241 LPYPGVLPQGP-PPPKAFG 258
PYPGVLP+ P K FG
Sbjct 241 APYPGVLPETEGEPKKKFG 259
>gi|226360555|ref|YP_002778333.1| ribonuclease PH [Rhodococcus opacus B4]
gi|226239040|dbj|BAH49388.1| ribonuclease PH [Rhodococcus opacus B4]
Length=262
Score = 415 bits (1067), Expect = 3e-114, Method: Compositional matrix adjust.
Identities = 204/262 (78%), Positives = 231/262 (89%), Gaps = 3/262 (1%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
++ REDGR D ELR V ITRGFT +PAGSVL+EFG+T+V+CTASV +GVPRWR+ TGLGW
Sbjct 1 MTTREDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGTGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH+RS RESV+G++ GRTQEISRL+GRSLRACIDLAA+GENTIA+DCDV
Sbjct 61 LTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVAL DAVTYL AAG+L+DP+P+SC IAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTAAITGAYVALVDAVTYLRAAGRLADPQPISCGIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDKLLD AL C+ LF Q+ AL
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQKAALE 240
Query 241 LPYPGVLPQGPPP---PKAFGT 259
LPYPG LP+ P K FG+
Sbjct 241 LPYPGELPEPKVPETSKKKFGS 262
>gi|111018437|ref|YP_701409.1| ribonuclease PH [Rhodococcus jostii RHA1]
gi|110817967|gb|ABG93251.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1]
Length=262
Score = 414 bits (1065), Expect = 5e-114, Method: Compositional matrix adjust.
Identities = 203/261 (78%), Positives = 230/261 (89%), Gaps = 3/261 (1%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
++ REDGR D ELR V ITRGFT +PAGSVL+EFG+T+V+CTASV +GVPRWR+ +GLGW
Sbjct 1 MTTREDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH+RS RESV+G++ GRTQEISRL+GRSLRACIDLAA+GENTIA+DCDV
Sbjct 61 LTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVAL DAVTYL AAG+L+DP+P+SC IAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTAAITGAYVALVDAVTYLRAAGRLADPQPISCGIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDKLLD AL C+ LF Q+ AL
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQKAALE 240
Query 241 LPYPGVLPQGPPP---PKAFG 258
LPYPG LP+ P K FG
Sbjct 241 LPYPGALPEPKVPETSKKKFG 261
>gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
Length=252
Score = 410 bits (1055), Expect = 8e-113, Method: Compositional matrix adjust.
Identities = 198/250 (80%), Positives = 223/250 (90%), Gaps = 0/250 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
++ R DGR D ELRP+ TRGFT +PAGSVL+EFG+T+V+CTASVTEGVP WR+ +GLGW
Sbjct 1 MTSRADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEY+MLP+ATH RS RESVRG++ GRT EISRLIGRSLRACIDLAALGENTIAIDCDV
Sbjct 61 LTAEYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYL A GKL+DP+PLSC IAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLGAGGKLADPQPLSCIIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATD GTLVE+QGTGEGATFAR TLDK+LD+A + + AAQR+ LA
Sbjct 181 EEDSRAEVDMNVVATDAGTLVEVQGTGEGATFARGTLDKMLDVACAGIENIVAAQREVLA 240
Query 241 LPYPGVLPQG 250
PYPG+LP G
Sbjct 241 QPYPGLLPGG 250
>gi|317508770|ref|ZP_07966420.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
gi|316252933|gb|EFV12353.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
Length=261
Score = 410 bits (1053), Expect = 1e-112, Method: Compositional matrix adjust.
Identities = 201/260 (78%), Positives = 229/260 (89%), Gaps = 2/260 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
++ R DGR D E+RPV ITRGFT NP GSVL+EFG T+V C ASVTEGVPRWRK TG GW
Sbjct 1 MTTRLDGRHDDEMRPVKITRGFTGNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+AT +R+DRESVRG+L GRTQEISRLIGRSLRACIDLAALGENTI++DCDV
Sbjct 61 LTAEYAMLPAATATRNDRESVRGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGA+VAL+DAVT+L+A+G+L+DP+P+SCAIAAVSVG+VDGR+R+DLPY
Sbjct 121 LQADGGTRTAAITGAFVALSDAVTWLAASGRLADPQPISCAIAAVSVGLVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATDTGTLVE+QGT EGATF R TLDKLLD+A + L AQR+ALA
Sbjct 181 EEDSRAEVDMNVVATDTGTLVEVQGTAEGATFHRKTLDKLLDLAFAGIEQLVVAQREALA 240
Query 241 LPYPGVLPQGPP--PPKAFG 258
LPYPG LP+ P KAFG
Sbjct 241 LPYPGTLPEPPSGGKKKAFG 260
>gi|343924692|ref|ZP_08764234.1| ribonuclease PH [Gordonia alkanivorans NBRC 16433]
gi|343765372|dbj|GAA11160.1| ribonuclease PH [Gordonia alkanivorans NBRC 16433]
Length=251
Score = 404 bits (1038), Expect = 7e-111, Method: Compositional matrix adjust.
Identities = 197/248 (80%), Positives = 220/248 (89%), Gaps = 0/248 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
++ R DGR D ELRP+ TRGFT +PAGSVL+EFG T+V+CTASVTEGVP WR+ +GLGW
Sbjct 1 MTTRADGRADDELRPISFTRGFTSHPAGSVLVEFGQTRVMCTASVTEGVPPWRRGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEY+MLP+ATH R+ RESV+G++ GRT EISRL+GRSLRACIDLAALGENTIA+DCDV
Sbjct 61 LTAEYSMLPAATHERNKRESVKGKIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYL AAGKL+DP+PLSCAIAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLRAAGKLADPQPLSCAIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATD GTLVE+QGTGEGATFARSTLD LLD+A LF AQR LA
Sbjct 181 EEDSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDALLDVAAIGTQKLFEAQRAVLA 240
Query 241 LPYPGVLP 248
PYPG LP
Sbjct 241 EPYPGQLP 248
>gi|296393943|ref|YP_003658827.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
gi|296181090|gb|ADG97996.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
Length=261
Score = 404 bits (1037), Expect = 9e-111, Method: Compositional matrix adjust.
Identities = 196/258 (76%), Positives = 225/258 (88%), Gaps = 0/258 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
++ R DGR D E+RPV ITRGFT NP GSVL+EFG T+V C ASVTEGVPRWRK TG GW
Sbjct 1 MTTRLDGRHDDEMRPVKITRGFTSNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+AT +R+DRESV+G+L GRTQEISRLIGRSLRACIDLAALGENTI++DCDV
Sbjct 61 LTAEYAMLPAATATRNDRESVKGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGA+VAL+DAVT+L+A+G+L+DP+P+SC IAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTAAITGAFVALSDAVTWLAASGRLADPQPISCGIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EED+RAEVDMNVVATDTG LVE+QGT EGATF R TLDKLLD+A + L AAQ++ALA
Sbjct 181 EEDARAEVDMNVVATDTGALVEVQGTAEGATFHRKTLDKLLDLAFSGIERLVAAQQEALA 240
Query 241 LPYPGVLPQGPPPPKAFG 258
LPYPG LP P K G
Sbjct 241 LPYPGTLPDPPSSGKKKG 258
>gi|333921282|ref|YP_004494863.1| ribonuclease PH [Amycolicicoccus subflavus DQS3-9A1]
gi|333483503|gb|AEF42063.1| Ribonuclease PH [Amycolicicoccus subflavus DQS3-9A1]
Length=263
Score = 403 bits (1036), Expect = 1e-110, Method: Compositional matrix adjust.
Identities = 197/262 (76%), Positives = 226/262 (87%), Gaps = 3/262 (1%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+++R+DGR D+ELRPV ITRGFT PAGSVL+EFG T+VLCTAS+ EGVPRWR+ TG GW
Sbjct 1 MTRRDDGREDNELRPVRITRGFTNYPAGSVLVEFGQTRVLCTASIDEGVPRWREGTGQGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLPSATH+RS RESVRG+L GRTQEISRL+GRSLRACIDL A+G T+ +DCDV
Sbjct 61 LTAEYAMLPSATHTRSGRESVRGKLGGRTQEISRLVGRSLRACIDLGAIGSRTVTVDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
+QADGGTRTAAITGAYVAL DA+TYL AA L DP+PLSCAIAAVSVGVVDGR+R+DLPY
Sbjct 121 IQADGGTRTAAITGAYVALHDAMTYLGAADALVDPKPLSCAIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVD+NVVATD GTLVE+QGTGEGATF RSTLDKL+D+AL C+ LF Q +ALA
Sbjct 181 EEDSRAEVDLNVVATDVGTLVEVQGTGEGATFPRSTLDKLIDLALEGCEQLFVVQNEALA 240
Query 241 LPYPGVLPQ---GPPPPKAFGT 259
PYPG LP+ P K+FG+
Sbjct 241 APYPGELPKPDPSAPKRKSFGS 262
>gi|262201910|ref|YP_003273118.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
gi|262085257|gb|ACY21225.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
Length=251
Score = 403 bits (1035), Expect = 1e-110, Method: Compositional matrix adjust.
Identities = 197/248 (80%), Positives = 220/248 (89%), Gaps = 0/248 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
++ R DGR D ELRP+ TRGFT +PAGSVL+EFG T+V+CTASV +GVP WR+ +GLGW
Sbjct 1 MTTRADGRADDELRPISFTRGFTSHPAGSVLVEFGQTRVMCTASVNDGVPPWRRGSGLGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH RS RESV+GR+ GRT EISRL+GRSLRACIDL ALGENTIA+DCDV
Sbjct 61 LTAEYAMLPAATHERSSRESVKGRVGGRTHEISRLVGRSLRACIDLGALGENTIALDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVT+L AAGKLSDP+PLSCAIAAVSVGVVDGR+R+DLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTWLRAAGKLSDPQPLSCAIAAVSVGVVDGRVRLDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EEDSRAEVDMNVVATD GTLVE+QGTGEGATFARSTLD LLD+A + LF AQR+ LA
Sbjct 181 EEDSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDALLDVAAVGTEKLFEAQREVLA 240
Query 241 LPYPGVLP 248
PYPG LP
Sbjct 241 APYPGELP 248
>gi|256375162|ref|YP_003098822.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
gi|255919465|gb|ACU34976.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
Length=254
Score = 400 bits (1027), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 196/246 (80%), Positives = 220/246 (90%), Gaps = 0/246 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R DGR D LR + ITRGF + PAGSVLIEFG+T+VLC ASVTEGVPRWR +GLGW+TA
Sbjct 3 RTDGRNDDVLRDIRITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRSGSGLGWVTA 62
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EYAMLPSATH+R DRES++GR+ GRT EISRLIGRSLRACIDLAALGENTI IDCDV+QA
Sbjct 63 EYAMLPSATHTRGDRESIKGRVGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTAAITGAYVALADAVT+L AAG+L+DP+PLSCAI+AVSVGVVDGR+R+DLPYEED
Sbjct 123 DGGTRTAAITGAYVALADAVTWLGAAGRLADPQPLSCAISAVSVGVVDGRVRLDLPYEED 182
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPY 243
SRAEVDMNVVATD GTLVE+QGTGEGATFARSTLD++LD+AL C L Q +ALA PY
Sbjct 183 SRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDRMLDLALQGCAELNRLQTEALAQPY 242
Query 244 PGVLPQ 249
PGVLP+
Sbjct 243 PGVLPE 248
>gi|108800808|ref|YP_641005.1| ribonuclease PH [Mycobacterium sp. MCS]
gi|119869948|ref|YP_939900.1| ribonuclease PH [Mycobacterium sp. KMS]
gi|126436406|ref|YP_001072097.1| ribonuclease PH [Mycobacterium sp. JLS]
6 more sequence titles
Length=260
Score = 399 bits (1026), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 221/260 (85%), Positives = 237/260 (92%), Gaps = 1/260 (0%)
Query 1 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGW 60
+S+REDGRLD ELRPV ITRGFT +PAGSVL+EFG T+V+CTASVTEGVPRWRK TG GW
Sbjct 1 MSRREDGRLDDELRPVRITRGFTSHPAGSVLVEFGETRVMCTASVTEGVPRWRKGTGQGW 60
Query 61 LTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDV 120
LTAEYAMLP+ATH RSDRESV+GR+ GRTQEISRLIGRSLRACIDL ALGENTIAIDCDV
Sbjct 61 LTAEYAMLPAATHDRSDRESVKGRVGGRTQEISRLIGRSLRACIDLNALGENTIAIDCDV 120
Query 121 LQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPY 180
LQADGGTRTAAITGAYVALADAVTYL+AA KLSDPRPLSCAIAAVSVGVVDGR+RVDLPY
Sbjct 121 LQADGGTRTAAITGAYVALADAVTYLAAAEKLSDPRPLSCAIAAVSVGVVDGRVRVDLPY 180
Query 181 EEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
EDSRAEVDMNVVATDTGTLVEIQGTGEGATF RSTLDKLLD+AL +CD LF QR+AL
Sbjct 181 SEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDLALASCDQLFVVQREALD 240
Query 241 LPYPGVLPQ-GPPPPKAFGT 259
PYPG LP+ PP KAFG+
Sbjct 241 APYPGALPEPTSPPKKAFGS 260
>gi|331695372|ref|YP_004331611.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
gi|326950061|gb|AEA23758.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
Length=251
Score = 392 bits (1007), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 192/245 (79%), Positives = 216/245 (89%), Gaps = 0/245 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R DGR D ELRPV ITRGF ++PAGSVL+EFG TKVLC ASVT+GVPRWRK +GLGWLTA
Sbjct 3 RADGRADDELRPVRITRGFQKHPAGSVLVEFGDTKVLCAASVTDGVPRWRKGSGLGWLTA 62
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EYAMLPSAT++RSDRESVRGR+ GRT EISRLIGRSLRACIDL ALGENTIA+DCDV+QA
Sbjct 63 EYAMLPSATNTRSDRESVRGRIGGRTHEISRLIGRSLRACIDLKALGENTIALDCDVIQA 122
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTAAITGAYVALADAVT+L+A +L+DP+P+SC +AAVSVGVVDGR+R+DLPYEED
Sbjct 123 DGGTRTAAITGAYVALADAVTWLAAHNRLADPKPISCQVAAVSVGVVDGRVRLDLPYEED 182
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPY 243
SRAEVD NVVATDTGTL+E+QGT EGATF+R TLD +LD AL TL Q +ALA PY
Sbjct 183 SRAEVDTNVVATDTGTLIEVQGTAEGATFSRRTLDAMLDSALAGIATLATLQAEALAAPY 242
Query 244 PGVLP 248
PG LP
Sbjct 243 PGTLP 247
>gi|134097802|ref|YP_001103463.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
gi|166228314|sp|A4F913.1|RNPH_SACEN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|133910425|emb|CAM00538.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
Length=251
Score = 391 bits (1004), Expect = 6e-107, Method: Compositional matrix adjust.
Identities = 190/247 (77%), Positives = 217/247 (88%), Gaps = 0/247 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R DGR D LR V ITRG+ + PAGSVL+EFG T+VLC ASV EGVPRWR +GLGW+TA
Sbjct 3 RADGRSDDALREVRITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTA 62
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EYAMLPS+T++RS RESV+GR+ GRT EISRL+GRSLRACIDLAALGENTIA+DCDV+QA
Sbjct 63 EYAMLPSSTNTRSARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQA 122
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTAAITGAYVALADA+T+LSAAG+L+DP+PLSC+IAAVSVGVVDGR+R+DLPYEED
Sbjct 123 DGGTRTAAITGAYVALADAITWLSAAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEED 182
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPY 243
SRAEVDMNVVATD GTLVE+QGTGEGATF RST+DK++D AL C L Q +ALA PY
Sbjct 183 SRAEVDMNVVATDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALAAPY 242
Query 244 PGVLPQG 250
PG LP G
Sbjct 243 PGELPGG 249
>gi|291005562|ref|ZP_06563535.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
Length=237
Score = 378 bits (971), Expect = 4e-103, Method: Compositional matrix adjust.
Identities = 182/233 (79%), Positives = 209/233 (90%), Gaps = 0/233 (0%)
Query 18 ITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSD 77
ITRG+ + PAGSVL+EFG T+VLC ASV EGVPRWR +GLGW+TAEYAMLPS+T++RS
Sbjct 3 ITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTAEYAMLPSSTNTRSA 62
Query 78 RESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYV 137
RESV+GR+ GRT EISRL+GRSLRACIDLAALGENTIA+DCDV+QADGGTRTAAITGAYV
Sbjct 63 RESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQADGGTRTAAITGAYV 122
Query 138 ALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDT 197
ALADA+T+LSAAG+L+DP+PLSC+IAAVSVGVVDGR+R+DLPYEEDSRAEVDMNVVATD
Sbjct 123 ALADAITWLSAAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDH 182
Query 198 GTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLPQG 250
GTLVE+QGTGEGATF RST+DK++D AL C L Q +ALA PYPG LP G
Sbjct 183 GTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALAAPYPGELPGG 235
>gi|300789523|ref|YP_003769814.1| ribonuclease PH [Amycolatopsis mediterranei U32]
gi|299799037|gb|ADJ49412.1| ribonuclease PH [Amycolatopsis mediterranei U32]
gi|340531178|gb|AEK46383.1| ribonuclease PH [Amycolatopsis mediterranei S699]
Length=258
Score = 378 bits (970), Expect = 6e-103, Method: Compositional matrix adjust.
Identities = 195/256 (77%), Positives = 224/256 (88%), Gaps = 1/256 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R+DGR D +LR + ITRGF + PAGSVLIEFG+T+VLC ASVTEGVPRWR +GLGW+TA
Sbjct 3 RKDGRNDDQLRDIKITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EYAMLPSAT++R DRESV+GR+ GRT EISRLIGRSLRACIDLAALGENTI IDCDV+QA
Sbjct 63 EYAMLPSATNTRGDRESVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTAA+TG YVALADA+T+LSAA +L+DP+PLS ++AAVSVGVVDGR+R+DLPYEED
Sbjct 123 DGGTRTAAVTGGYVALADAITWLSAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEED 182
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPY 243
SRAEVDMNVVATD GTL+E+QGTGEGATFARSTLD +LDMAL C L Q +ALALPY
Sbjct 183 SRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDMALAGCAELTRLQNEALALPY 242
Query 244 PGVLPQGPPPPKAFGT 259
PG LP+ P P K G+
Sbjct 243 PGELPE-PRPDKKKGS 257
>gi|302529720|ref|ZP_07282062.1| ribonuclease PH [Streptomyces sp. AA4]
gi|302438615|gb|EFL10431.1| ribonuclease PH [Streptomyces sp. AA4]
Length=258
Score = 376 bits (965), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 192/255 (76%), Positives = 225/255 (89%), Gaps = 1/255 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R+DGR D +LR V +TRGF + PAGSVL+EFG+T+VLC ASVTEGVPRWR +GLGW+TA
Sbjct 3 RKDGRNDDQLREVKLTRGFQKWPAGSVLVEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EYAMLPSAT++RSDRE+V+GR+ GRT EISRLIGRSLRACIDLAALGENTI IDCDV+QA
Sbjct 63 EYAMLPSATNTRSDREAVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTAA+TG YVALADA+T+L AA +L+DP+PLS ++AAVSVGVVDGR+R+DLPYEED
Sbjct 123 DGGTRTAAVTGGYVALADAITWLGAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEED 182
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPY 243
SRAEVDMNVVATD GTL+E+QGTGEGATFARSTLD +LD+AL C+ L Q++ALALPY
Sbjct 183 SRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDLALAGCEELTRLQKEALALPY 242
Query 244 PGVLPQGPPPPKAFG 258
PG LP+ P P K G
Sbjct 243 PGELPE-PRPDKKKG 256
>gi|257056884|ref|YP_003134716.1| ribonuclease PH [Saccharomonospora viridis DSM 43017]
gi|256586756|gb|ACU97889.1| RNAse PH [Saccharomonospora viridis DSM 43017]
Length=258
Score = 372 bits (954), Expect = 4e-101, Method: Compositional matrix adjust.
Identities = 192/256 (75%), Positives = 220/256 (86%), Gaps = 1/256 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R DGR D +LR V ITRGF + PAGSVLIE G+T+VLC ASV EGVPRWR +GLGW+TA
Sbjct 3 RVDGRDDDQLREVRITRGFQQWPAGSVLIEVGNTRVLCAASVVEGVPRWRNGSGLGWVTA 62
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EY+MLPSATH+R DRESV+GR+ GRT EISRLIGRSLR+CIDLAALGENTI IDCDV+QA
Sbjct 63 EYSMLPSATHTRGDRESVKGRIGGRTHEISRLIGRSLRSCIDLAALGENTIVIDCDVIQA 122
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTAAITG YVALADA+T+L AAG+L+DP+PLS A++AVSVGVVDGR+R+DLPYEED
Sbjct 123 DGGTRTAAITGGYVALADAITWLGAAGRLADPKPLSAAVSAVSVGVVDGRVRLDLPYEED 182
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPY 243
SRAEVDMNVVATD GTL+E+QGTGEGATF RSTLDK+LD+A C L Q +ALA PY
Sbjct 183 SRAEVDMNVVATDAGTLIEVQGTGEGATFTRSTLDKMLDLAQAGCAELARIQAEALAAPY 242
Query 244 PGVLPQGPPPPKAFGT 259
PG LP+ PP PK G+
Sbjct 243 PGELPE-PPQPKKKGS 257
>gi|258651924|ref|YP_003201080.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
gi|258555149|gb|ACV78091.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
Length=246
Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 188/240 (79%), Positives = 207/240 (87%), Gaps = 0/240 (0%)
Query 3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLT 62
R DGR DHELRPV TRGF ++PAGSVL+EFG TKVLC ASVT GVPRWRK +GLGWLT
Sbjct 2 NRADGRADHELRPVTFTRGFQQHPAGSVLVEFGGTKVLCAASVTTGVPRWRKGSGLGWLT 61
Query 63 AEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQ 122
AEYAMLPSATH RSDRESV+GR+ GRT EISRLIGRSLRAC+DL +LGENTIA+DCDVLQ
Sbjct 62 AEYAMLPSATHERSDRESVKGRVGGRTHEISRLIGRSLRACLDLRSLGENTIAVDCDVLQ 121
Query 123 ADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
ADGGTRTAAITGAYVALADAV YL G+L+DP+PLSC IAAVSVGVV GR+R+DLPYEE
Sbjct 122 ADGGTRTAAITGAYVALADAVAYLRERGQLADPQPLSCQIAAVSVGVVGGRVRLDLPYEE 181
Query 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALP 242
D+RAEVDMNVVATD GTLVE+QGT EGAT++RSTLD +LD AL TL QR ALA P
Sbjct 182 DARAEVDMNVVATDVGTLVEVQGTAEGATYSRSTLDAMLDSALAGIATLTEMQRAALAGP 241
>gi|324997302|ref|ZP_08118414.1| ribonuclease PH [Pseudonocardia sp. P1]
Length=245
Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 174/227 (77%), Positives = 198/227 (88%), Gaps = 0/227 (0%)
Query 18 ITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSD 77
ITRGF ++PAGSVL+EFG TKVLC ASVTEGVPRWRK +GLGW+TAEYAMLPS+T +RS
Sbjct 3 ITRGFQKHPAGSVLVEFGDTKVLCAASVTEGVPRWRKGSGLGWVTAEYAMLPSSTDTRSS 62
Query 78 RESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYV 137
RESV+G++ GRT EISRLIGRSLRACIDL ALGENTIAIDCDVLQADGGTRTAAITGAYV
Sbjct 63 RESVKGKIGGRTHEISRLIGRSLRACIDLRALGENTIAIDCDVLQADGGTRTAAITGAYV 122
Query 138 ALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDT 197
AL DAVT+L GKL+DP+P+SC +AAVSVGVVDGR+R+DLPYEEDSRAEVD NVVAT+T
Sbjct 123 ALCDAVTWLGEHGKLTDPKPISCQVAAVSVGVVDGRVRLDLPYEEDSRAEVDTNVVATET 182
Query 198 GTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYP 244
GTL+E+QGTGEGATFAR TLD +LD AL + Q +AL P+P
Sbjct 183 GTLIEVQGTGEGATFARKTLDAMLDSALAGIAGIARMQIEALDAPHP 229
>gi|319948537|ref|ZP_08022668.1| ribonuclease PH [Dietzia cinnamea P4]
gi|319437784|gb|EFV92773.1| ribonuclease PH [Dietzia cinnamea P4]
Length=261
Score = 347 bits (890), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 183/256 (72%), Positives = 209/256 (82%), Gaps = 2/256 (0%)
Query 3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLT 62
R DGR ELR V ITRGFT +PAGSVL+ FG T+V+CTASVTEGVPRWRK +GLGWLT
Sbjct 7 HRADGRGVDELRDVTITRGFTSHPAGSVLVTFGQTRVMCTASVTEGVPRWRKGSGLGWLT 66
Query 63 AEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQ 122
AEYAMLP+ATH RS RESVRG++ GRT EISRL+GRSLRACIDL+ALGENTIA+DCDVLQ
Sbjct 67 AEYAMLPAATHERSGRESVRGKVGGRTHEISRLVGRSLRACIDLSALGENTIALDCDVLQ 126
Query 123 ADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
ADGGTRTAAITGAYVALADA+T+L ++G ++ PL+ A+AAVSVGVVDG + DLPYEE
Sbjct 127 ADGGTRTAAITGAYVALADAITWLQSSGAVTG-NPLTGAVAAVSVGVVDGHVLCDLPYEE 185
Query 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALP 242
DSRAEVDMNVV TD G L+E+QGT EGA F R LD +LD A C+ LFA QR+ALA P
Sbjct 186 DSRAEVDMNVVCTDGGKLIEVQGTAEGAAFGRDVLDAMLDSAQAGCERLFALQREALAAP 245
Query 243 YPGVLPQGPPPPKAFG 258
YPG LP PP + G
Sbjct 246 YPGELPS-PPAARNRG 260
>gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
gi|259494118|sp|C4LJY5.1|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
Length=254
Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 163/246 (67%), Positives = 195/246 (80%), Gaps = 1/246 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R DGR E+RPV I RGFT NPAGSVL+EFG+T+V+CTASV + VPR++K +G GWLTA
Sbjct 6 RADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGWLTA 65
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EY+MLPSAT R RES+RG++ GRT EISRL+GRSLRA IDL ALGENTIA+DCDVLQA
Sbjct 66 EYSMLPSATAERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLKALGENTIALDCDVLQA 125
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTA+ITGAYVALADA+TYL A G +S L +AAVSVG++DG + +DLPYEED
Sbjct 126 DGGTRTASITGAYVALADALTYLEAEGLVSQ-NALLPPVAAVSVGLIDGHVCLDLPYEED 184
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPY 243
SRAEVDMNVV T++G VEIQGTGE +TF+R L + +D A C L AQ++AL+ PY
Sbjct 185 SRAEVDMNVVMTESGEFVEIQGTGEHSTFSREQLMQFMDAAEKGCSELIRAQKEALSKPY 244
Query 244 PGVLPQ 249
P LP
Sbjct 245 PKRLPN 250
>gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium amycolatum SK46]
gi|213951501|gb|EEB62892.1| ribonuclease PH [Corynebacterium amycolatum SK46]
Length=253
Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 160/246 (66%), Positives = 191/246 (78%), Gaps = 1/246 (0%)
Query 3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLT 62
+R DGR E+R V ITRGFT+NPAGSVL+ FG+T+V+CTASV + VPR+++ +G GWLT
Sbjct 9 RRADGRAVDEMRKVTITRGFTDNPAGSVLVTFGNTRVMCTASVEQSVPRFKRDSGEGWLT 68
Query 63 AEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQ 122
AEY+MLP++TH R RES+RG++ GRT EISRLIGRSLRA IDL LGENTI IDCDVLQ
Sbjct 69 AEYSMLPASTHERMPRESMRGKVKGRTHEISRLIGRSLRAAIDLKELGENTINIDCDVLQ 128
Query 123 ADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
ADGGTRTA+ITGAYVALADA+TYL A G + PL +AAVSVG++DGR+ +DLPYEE
Sbjct 129 ADGGTRTASITGAYVALADALTYLHAVGAVPGT-PLKAPVAAVSVGIIDGRVCLDLPYEE 187
Query 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALP 242
DSRAEVD+NVV T G VEIQGTGE TF R L+ +LD A L A Q++ L P
Sbjct 188 DSRAEVDLNVVMTAEGKFVEIQGTGEEGTFDRDQLNDMLDSAEKGLRELIALQQEVLRAP 247
Query 243 YPGVLP 248
YPG LP
Sbjct 248 YPGELP 253
>gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
Length=256
Score = 315 bits (807), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 159/237 (68%), Positives = 187/237 (79%), Gaps = 1/237 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R DGR +ELRPV ITRGFT NPAGSVL+EFG+T+V+CTASV EGVPR++K +G GWLTA
Sbjct 18 RADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EYAMLP++TH R RES++G++ GRTQEISRL+GR+LRA +DL LGENT+ IDCDVLQA
Sbjct 78 EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTAAITGAYVALADA+ L A G + +PL +AAVSVG++DG +DLPYEED
Sbjct 138 DGGTRTAAITGAYVALADALAVLQARGVVPG-QPLRAPVAAVSVGIIDGVPCLDLPYEED 196
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
SRA+VDMNV T G VEIQGTGE A F R L+ LLD+A G L AQR ALA
Sbjct 197 SRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALA 253
>gi|238063132|ref|ZP_04607841.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
gi|237884943|gb|EEP73771.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
Length=241
Score = 315 bits (806), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 158/239 (67%), Positives = 191/239 (80%), Gaps = 2/239 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R DGRL +LRPV ++RG++ +P GSVL+EFG T+VLCTASVTEGVPRWRK +GLGW+TA
Sbjct 3 RPDGRLPDQLRPVTLSRGWSTHPEGSVLVEFGGTRVLCTASVTEGVPRWRKGSGLGWVTA 62
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EYAMLP AT++RSDRESV+GR+ GRT EISRLIGRSLRA IDL ALGEN++ +DCDVLQA
Sbjct 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDP--RPLSCAIAAVSVGVVDGRIRVDLPYE 181
DGGTRTAA+TGAYVAL DAV++L+A L+ + + ++AAVSVGV+ G R+DL YE
Sbjct 123 DGGTRTAAVTGAYVALHDAVSWLAARKALAGKPEKVMHRSVAAVSVGVIAGEARLDLCYE 182
Query 182 EDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
ED AEVDMNVV T +G VE+QGTGE FAR LD LLD+A+ C L AQR AL+
Sbjct 183 EDVAAEVDMNVVCTGSGEFVEVQGTGESGVFARDQLDALLDLAVAGCAELAEAQRKALS 241
>gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411]
gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411]
Length=256
Score = 314 bits (804), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 159/237 (68%), Positives = 186/237 (79%), Gaps = 1/237 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R DGR ELRPV ITRGFT NPAGSVL+EFG+T+V+CTASV EGVPR++K +G GWLTA
Sbjct 18 RADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EYAMLP++TH R RES++G++ GRTQEISRL+GR+LRA +DL LGENT+ IDCDVLQA
Sbjct 78 EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTAAITGAYVALADA+ L A G + +PL +AAVSVG++DG +DLPYEED
Sbjct 138 DGGTRTAAITGAYVALADALAVLQARGVVPG-QPLRAPVAAVSVGIIDGVPCLDLPYEED 196
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
SRA+VDMNV T G VEIQGTGE A F R L+ LLD+A G L AQR ALA
Sbjct 197 SRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALA 253
>gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC
33030]
gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC
33030]
Length=245
Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/236 (67%), Positives = 185/236 (79%), Gaps = 1/236 (0%)
Query 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
R DGR E+RPV ITRGFT NPAGSVL+EFG+T+V+CTAS EGVPR++K +G GWLTA
Sbjct 9 RADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTRVMCTASAEEGVPRFKKDSGEGWLTA 68
Query 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
EYAMLP+ATH R RES++G++ GRT EISRL+GRSLRA +DL ALGENTI +DCDVLQA
Sbjct 69 EYAMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLTALGENTIQLDCDVLQA 128
Query 124 DGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEED 183
DGGTRTA+ITGAYVALADA+ YL G + PL +AAVSVG+VDGR+ +DLPYEED
Sbjct 129 DGGTRTASITGAYVALADAIGYLKEQGVVPG-EPLLAPVAAVSVGIVDGRVCLDLPYEED 187
Query 184 SRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDAL 239
SRAEVD+NVV TD+G VE+QGTGE F R L +LD A C L AQ+ AL
Sbjct 188 SRAEVDLNVVMTDSGDFVEVQGTGEHGLFGREQLGLMLDAAEKGCRELIDAQKAAL 243
>gi|336324996|ref|YP_004604962.1| ribonuclease PH [Corynebacterium resistens DSM 45100]
gi|336100978|gb|AEI08798.1| ribonuclease PH [Corynebacterium resistens DSM 45100]
Length=270
Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 157/238 (66%), Positives = 189/238 (80%), Gaps = 1/238 (0%)
Query 3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLT 62
KR DGR E+RPV ITRGFT NPAGSVL+EFG+T+V+CTASV GVPR++K +G GWLT
Sbjct 30 KRADGRAVDEMRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVEIGVPRFKKDSGEGWLT 89
Query 63 AEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQ 122
AEYAMLPS+TH R RES++G++ GRT EISRL+GR+LRA +DL LGENTIAIDCDVLQ
Sbjct 90 AEYAMLPSSTHERMPRESMKGKVKGRTHEISRLVGRALRAAVDLTQLGENTIAIDCDVLQ 149
Query 123 ADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
ADGGTRTAAITGAYVALADA+ L G + PL +AAVSVG++DG +DLPYEE
Sbjct 150 ADGGTRTAAITGAYVALADALKVLKEQGVVPG-EPLLPPVAAVSVGIIDGVACLDLPYEE 208
Query 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240
DSRA+VDMNVV T+ G VEIQGTGE A F R+ L+ +L++A G L +AQ++ALA
Sbjct 209 DSRADVDMNVVMTEQGRFVEIQGTGEHAEFDRAELNAMLNLAEGGLRELISAQKEALA 266
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 382276364284
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40