BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1351
Length=109
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608491|ref|NP_215867.1| hypothetical protein Rv1351 [Mycoba... 224 4e-57
gi|289446946|ref|ZP_06436690.1| conserved hypothetical protein [... 221 4e-56
gi|254550363|ref|ZP_05140810.1| hypothetical protein Mtube_07870... 186 1e-45
>gi|15608491|ref|NP_215867.1| hypothetical protein Rv1351 [Mycobacterium tuberculosis H37Rv]
gi|15840806|ref|NP_335843.1| hypothetical protein MT1394 [Mycobacterium tuberculosis CDC1551]
gi|31792547|ref|NP_855040.1| hypothetical protein Mb1386 [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=109
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)
Query 1 MTPRSLPRYGNSSRRKSFPMHRPSNVATATRKKSSIGWVLLACSVAGCKGIDTTEFILGR 60
MTPRSLPRYGNSSRRKSFPMHRPSNVATATRKKSSIGWVLLACSVAGCKGIDTTEFILGR
Sbjct 1 MTPRSLPRYGNSSRRKSFPMHRPSNVATATRKKSSIGWVLLACSVAGCKGIDTTEFILGR 60
Query 61 AGAFELAVRAAQHRHRYLTMVNVGRAPPRRCRTVCMAATDTPRNIRLNG 109
AGAFELAVRAAQHRHRYLTMVNVGRAPPRRCRTVCMAATDTPRNIRLNG
Sbjct 61 AGAFELAVRAAQHRHRYLTMVNVGRAPPRRCRTVCMAATDTPRNIRLNG 109
>gi|289446946|ref|ZP_06436690.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289419904|gb|EFD17105.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=109
Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/109 (99%), Positives = 108/109 (99%), Gaps = 0/109 (0%)
Query 1 MTPRSLPRYGNSSRRKSFPMHRPSNVATATRKKSSIGWVLLACSVAGCKGIDTTEFILGR 60
MTPRSLPRYGNSS+RK FPMHRPSNVATATRKKSSIGWVLLACSVAGCKGIDTTEFILGR
Sbjct 1 MTPRSLPRYGNSSKRKFFPMHRPSNVATATRKKSSIGWVLLACSVAGCKGIDTTEFILGR 60
Query 61 AGAFELAVRAAQHRHRYLTMVNVGRAPPRRCRTVCMAATDTPRNIRLNG 109
AGAFELAVRAAQHRHRYLTMVNVGRAPPRRCRTVCMAATDTPRNIRLNG
Sbjct 61 AGAFELAVRAAQHRHRYLTMVNVGRAPPRRCRTVCMAATDTPRNIRLNG 109
>gi|254550363|ref|ZP_05140810.1| hypothetical protein Mtube_07870 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=90
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)
Query 20 MHRPSNVATATRKKSSIGWVLLACSVAGCKGIDTTEFILGRAGAFELAVRAAQHRHRYLT 79
MHRPSNVATATRKKSSIGWVLLACSVAGCKGIDTTEFILGRAGAFELAVRAAQHRHRYLT
Sbjct 1 MHRPSNVATATRKKSSIGWVLLACSVAGCKGIDTTEFILGRAGAFELAVRAAQHRHRYLT 60
Query 80 MVNVGRAPPRRCRTVCMAATDTPRNIRLNG 109
MVNVGRAPPRRCRTVCMAATDTPRNIRLNG
Sbjct 61 MVNVGRAPPRRCRTVCMAATDTPRNIRLNG 90
Lambda K H
0.324 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129509500864
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40