BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1356c Length=263 Score E Sequences producing significant alignments: (Bits) Value gi|15608496|ref|NP_215872.1| hypothetical protein Rv1356c [Mycob... 531 5e-149 gi|308231815|ref|ZP_07413872.2| hypothetical protein TMAG_03503 ... 508 4e-142 gi|118464921|ref|YP_882317.1| hypothetical protein MAV_3133 [Myc... 263 3e-68 gi|41407441|ref|NP_960277.1| hypothetical protein MAP1343 [Mycob... 262 4e-68 gi|336457794|gb|EGO36788.1| hypothetical protein MAPs_18930 [Myc... 262 4e-68 gi|118471208|ref|YP_886553.1| hypothetical protein MSMEG_2199 [M... 261 9e-68 gi|342860782|ref|ZP_08717432.1| hypothetical protein MCOL_17963 ... 260 1e-67 gi|120402965|ref|YP_952794.1| hypothetical protein Mvan_1969 [My... 258 5e-67 gi|254820326|ref|ZP_05225327.1| hypothetical protein MintA_10376... 248 9e-64 gi|108798718|ref|YP_638915.1| hypothetical protein Mmcs_1750 [My... 242 5e-62 gi|119867836|ref|YP_937788.1| hypothetical protein Mkms_1797 [My... 241 5e-62 gi|315445285|ref|YP_004078164.1| hypothetical protein Mspyr1_372... 228 6e-58 gi|145224954|ref|YP_001135632.1| hypothetical protein Mflv_4375 ... 228 7e-58 gi|111022715|ref|YP_705687.1| hypothetical protein RHA1_ro05751 ... 210 2e-52 gi|226365222|ref|YP_002783005.1| hypothetical protein ROP_58130 ... 207 1e-51 gi|229492083|ref|ZP_04385893.1| conserved hypothetical protein [... 191 9e-47 gi|229494649|ref|ZP_04388409.1| conserved hypothetical protein [... 185 5e-45 gi|258655341|ref|YP_003204497.1| hypothetical protein Namu_5242 ... 182 6e-44 gi|258650471|ref|YP_003199627.1| hypothetical protein Namu_0205 ... 169 4e-40 gi|262201076|ref|YP_003272284.1| hypothetical protein Gbro_1082 ... 168 7e-40 gi|343925603|ref|ZP_08765120.1| hypothetical protein GOALK_048_0... 161 7e-38 gi|54026892|ref|YP_121134.1| hypothetical protein nfa49180 [Noca... 149 5e-34 gi|254775583|ref|ZP_05217099.1| hypothetical protein MaviaA2_130... 146 3e-33 gi|326329545|ref|ZP_08195867.1| sensor histidine kinase [Nocardi... 38.5 0.98 gi|239986083|ref|ZP_04706747.1| CDA peptide synthetase I [Strept... 35.8 6.9 gi|60650933|gb|AAX31558.1| peptide synthetase 2 [Streptomyces ro... 35.4 7.7 gi|291442999|ref|ZP_06582389.1| peptide synthetase 2 [Streptomyc... 35.4 8.2 gi|291443022|ref|ZP_06582412.1| ATP-dependent tryptophan adenyla... 35.4 8.9 >gi|15608496|ref|NP_215872.1| hypothetical protein Rv1356c [Mycobacterium tuberculosis H37Rv] gi|15840811|ref|NP_335848.1| hypothetical protein MT1399 [Mycobacterium tuberculosis CDC1551] gi|31792552|ref|NP_855045.1| hypothetical protein Mb1391c [Mycobacterium bovis AF2122/97] 52 more sequence titles Length=263 Score = 531 bits (1367), Expect = 5e-149, Method: Compositional matrix adjust. Identities = 262/263 (99%), Positives = 263/263 (100%), Gaps = 0/263 (0%) Query 1 VLIAGYLTDWRIMTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQ 60 +LIAGYLTDWRIMTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQ Sbjct 1 MLIAGYLTDWRIMTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQ 60 Query 61 GALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVE 120 GALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVE Sbjct 61 GALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVE 120 Query 121 WAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFV 180 WAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFV Sbjct 121 WAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFV 180 Query 181 MGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVE 240 MGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVE Sbjct 181 MGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVE 240 Query 241 SRKLLRDVEALSATTAATAGAEQ 263 SRKLLRDVEALSATTAATAGAEQ Sbjct 241 SRKLLRDVEALSATTAATAGAEQ 263 >gi|308231815|ref|ZP_07413872.2| hypothetical protein TMAG_03503 [Mycobacterium tuberculosis SUMu001] gi|308369775|ref|ZP_07419021.2| hypothetical protein TMBG_01186 [Mycobacterium tuberculosis SUMu002] gi|308370697|ref|ZP_07422407.2| hypothetical protein TMCG_00991 [Mycobacterium tuberculosis SUMu003] 24 more sequence titles Length=251 Score = 508 bits (1307), Expect = 4e-142, Method: Compositional matrix adjust. Identities = 251/251 (100%), Positives = 251/251 (100%), Gaps = 0/251 (0%) Query 13 MTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVE 72 MTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVE Sbjct 1 MTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVE 60 Query 73 CTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRK 132 CTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRK Sbjct 61 CTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRK 120 Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW Sbjct 121 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 180 Query 193 RSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLRDVEALS 252 RSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLRDVEALS Sbjct 181 RSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLRDVEALS 240 Query 253 ATTAATAGAEQ 263 ATTAATAGAEQ Sbjct 241 ATTAATAGAEQ 251 >gi|118464921|ref|YP_882317.1| hypothetical protein MAV_3133 [Mycobacterium avium 104] gi|118166208|gb|ABK67105.1| conserved hypothetical protein [Mycobacterium avium 104] Length=239 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 123/210 (59%), Positives = 155/210 (74%), Gaps = 0/210 (0%) Query 41 CRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVV 100 CR+ S P +P LWN YL GAL +Y KHG++ LDL+ I DG+DT LFFAA+D G VV Sbjct 30 CRVTASTPEAEPELWNQYLDGALESYRKHGLDWVLDLERIRDGADTTLFFAALDPQGRVV 89 Query 101 GGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAI 160 GG RV+GPLRS +DSHA+ EW GNPGL +R MI +R PFGVVEVKS W NS + A+ Sbjct 90 GGTRVVGPLRSPEDSHALKEWKGNPGLPLLRYMIANRIPFGVVEVKSAWTNSREYGNRAL 149 Query 161 AAALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWW 220 + LAR +M+LLG QFVM TAAAH L++W+SSGGV+A+R+PAAAYP+E YRTK++WW Sbjct 150 STVLARTALPTMTLLGAQFVMATAAAHVLEQWQSSGGVVASRVPAAAYPNENYRTKVMWW 209 Query 221 DRRTLANHAEPKQLSRMLVESRKLLRDVEA 250 DRRTLA HA+P Q M E+ ++L + A Sbjct 210 DRRTLAAHADPAQFKLMCAENTEILSRLSA 239 >gi|41407441|ref|NP_960277.1| hypothetical protein MAP1343 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395793|gb|AAS03660.1| hypothetical protein MAP_1343 [Mycobacterium avium subsp. paratuberculosis K-10] Length=243 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 123/210 (59%), Positives = 155/210 (74%), Gaps = 0/210 (0%) Query 41 CRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVV 100 CR+ S P +P LWN YL GAL +Y KHG++ LDL+ I DG+DT LFFAA+D G VV Sbjct 34 CRVTASTPEAEPELWNQYLDGALESYRKHGLDWVLDLERIRDGADTALFFAALDPQGRVV 93 Query 101 GGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAI 160 GG RV+GPLRS +DSHA+ EW GNPGL +R MI +R PFGVVEVKS W NS + A+ Sbjct 94 GGTRVVGPLRSPEDSHALQEWEGNPGLPLLRYMIANRIPFGVVEVKSAWTNSREYGNRAL 153 Query 161 AAALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWW 220 + LAR +M+LLG QFVM TAAAH L++W+SSGGV+A+R+PAAAYP+E YRTK++WW Sbjct 154 STVLARTALPTMTLLGAQFVMATAAAHVLEQWQSSGGVVASRVPAAAYPNENYRTKVMWW 213 Query 221 DRRTLANHAEPKQLSRMLVESRKLLRDVEA 250 DRRTLA HA+P Q M E+ ++L + A Sbjct 214 DRRTLAAHADPAQFKLMCAENTEILSRLSA 243 >gi|336457794|gb|EGO36788.1| hypothetical protein MAPs_18930 [Mycobacterium avium subsp. paratuberculosis S397] Length=239 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 123/210 (59%), Positives = 155/210 (74%), Gaps = 0/210 (0%) Query 41 CRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVV 100 CR+ S P +P LWN YL GAL +Y KHG++ LDL+ I DG+DT LFFAA+D G VV Sbjct 30 CRVTASTPEAEPELWNQYLDGALESYRKHGLDWVLDLERIRDGADTALFFAALDPQGRVV 89 Query 101 GGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAI 160 GG RV+GPLRS +DSHA+ EW GNPGL +R MI +R PFGVVEVKS W NS + A+ Sbjct 90 GGTRVVGPLRSPEDSHALQEWEGNPGLPLLRYMIANRIPFGVVEVKSAWTNSREYGNRAL 149 Query 161 AAALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWW 220 + LAR +M+LLG QFVM TAAAH L++W+SSGGV+A+R+PAAAYP+E YRTK++WW Sbjct 150 STVLARTALPTMTLLGAQFVMATAAAHVLEQWQSSGGVVASRVPAAAYPNENYRTKVMWW 209 Query 221 DRRTLANHAEPKQLSRMLVESRKLLRDVEA 250 DRRTLA HA+P Q M E+ ++L + A Sbjct 210 DRRTLAAHADPAQFKLMCAENTEILSRLSA 239 >gi|118471208|ref|YP_886553.1| hypothetical protein MSMEG_2199 [Mycobacterium smegmatis str. MC2 155] gi|118172495|gb|ABK73391.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=254 Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 127/250 (51%), Positives = 168/250 (68%), Gaps = 0/250 (0%) Query 13 MTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVE 72 MT A L L +++ S W ++C +VV+ P + LW+ Y++GA R Y KHGVE Sbjct 5 MTLAGLEASDHSDLSLAKSHSWWDPTSECTIVVADPGAERELWHEYVRGAERNYRKHGVE 64 Query 73 CTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRK 132 C LD+ A+ G+DT LF A I+ G VVGG R GP R+AD+SHA+VEW+G PGL AVRK Sbjct 65 CALDMQALRTGTDTALFCAGINDAGRVVGGLRAKGPYRNADESHAIVEWSGQPGLDAVRK 124 Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 M++DR PFGVVE+K+ WV+ D ++S A+ LAR SM+LL +QF M TAAA+ L RW Sbjct 125 MVSDRIPFGVVEMKTAWVSDDPEQSRALTDTLARMPLHSMTLLNIQFAMATAAAYVLKRW 184 Query 193 RSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLRDVEALS 252 SSGGV+A +IPA YPD RY+TKM+WWDR T ANHA+PKQLS ES+++ + Sbjct 185 LSSGGVLATKIPATPYPDARYQTKMMWWDRSTFANHADPKQLSAYFAESQRITPRLGVAD 244 Query 253 ATTAATAGAE 262 T + TA + Sbjct 245 DTDSTTAAGQ 254 >gi|342860782|ref|ZP_08717432.1| hypothetical protein MCOL_17963 [Mycobacterium colombiense CECT 3035] gi|342131806|gb|EGT85063.1| hypothetical protein MCOL_17963 [Mycobacterium colombiense CECT 3035] Length=238 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/211 (60%), Positives = 158/211 (75%), Gaps = 2/211 (0%) Query 41 CRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVV 100 C + + PA +P LWN YL+GAL +Y +HG++ L LD I DG+DT LFFAA+D G VV Sbjct 29 CWVAAATPAAEPDLWNQYLEGALNSYRRHGLDWVLGLDQIQDGADTSLFFAALDPQGRVV 88 Query 101 GGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAI 160 GG RV+GPLRS +DSHA+ EW GNPGL +R MI++R PFGVVEVKS W NS + A+ Sbjct 89 GGTRVVGPLRSPEDSHALEEWKGNPGLPLLRHMISNRLPFGVVEVKSAWTNSREYGNRAL 148 Query 161 AAALAR-ALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIW 219 + LAR ALP+ M+LLGVQFVM TAAAH L++W+SSGGV+A R+PAAAYP E YRTK++W Sbjct 149 STVLARTALPM-MTLLGVQFVMATAAAHVLEQWQSSGGVVANRVPAAAYPTEDYRTKVMW 207 Query 220 WDRRTLANHAEPKQLSRMLVESRKLLRDVEA 250 WDRRTLA HAEP Q M E+ ++L + A Sbjct 208 WDRRTLATHAEPAQFKLMCAENAEVLSRISA 238 >gi|120402965|ref|YP_952794.1| hypothetical protein Mvan_1969 [Mycobacterium vanbaalenii PYR-1] gi|119955783|gb|ABM12788.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=249 Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 126/222 (57%), Positives = 158/222 (72%), Gaps = 3/222 (1%) Query 27 HF--SENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGS 84 HF + N S W DA+C LV+SQP LDP LW YL+GA +Y KHGVE LD+D IS G Sbjct 13 HFELASNHSWWDGDAECTLVMSQPHLDPDLWLEYLRGAEHSYRKHGVEAALDVDEISSGH 72 Query 85 DTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVE 144 DT +F+AA+D G V+GG R GPL ADDSHAVVEW G PGL+AVRKMI+DRAPFG++E Sbjct 73 DTAVFWAALDTTGRVIGGVRAKGPLTGADDSHAVVEWEGQPGLAAVRKMIDDRAPFGILE 132 Query 145 VKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIP 204 +KS +V D R+ + ALAR+ +M+ + +QF M T+A H LD+WRSSGGV+A+ IP Sbjct 133 MKSAFVTDDPARNKGVTRALARSGFHAMAAMDLQFCMATSAPHVLDKWRSSGGVVAS-IP 191 Query 205 AAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLR 246 A YPD RYRTKM+WWDR T HAEP Q+S++ E + R Sbjct 192 ATPYPDPRYRTKMMWWDRSTFIRHAEPAQVSKIFNEILDMQR 233 >gi|254820326|ref|ZP_05225327.1| hypothetical protein MintA_10376 [Mycobacterium intracellulare ATCC 13950] Length=235 Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 127/216 (59%), Positives = 160/216 (75%), Gaps = 0/216 (0%) Query 41 CRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVV 100 C +V S P +P LWN YL+GA +Y +HG++ LD+DAISDG+DT LFFAA+D G VV Sbjct 20 CWVVASTPRGEPDLWNQYLEGAAHSYRRHGLDWVLDVDAISDGADTALFFAALDPEGRVV 79 Query 101 GGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAI 160 GG RV+GPLRS +DSHA+VEW GNPGLS +R MI +R PFGVVEVKS W NS + ++ Sbjct 80 GGTRVVGPLRSPEDSHALVEWKGNPGLSLLRHMIANRLPFGVVEVKSAWANSREYGNQSL 139 Query 161 AAALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWW 220 + LAR +M+LLG QFVM TAAAH L++W+SSGGV+AAR+PAAAYP+E YRTK++WW Sbjct 140 SRVLARTALPTMTLLGAQFVMATAAAHVLEQWQSSGGVVAARVPAAAYPNENYRTKVMWW 199 Query 221 DRRTLANHAEPKQLSRMLVESRKLLRDVEALSATTA 256 DRRTL+ HAEP Q M E+ ++L AL T Sbjct 200 DRRTLSAHAEPAQFKLMCAENAEILSRFSALEEITC 235 >gi|108798718|ref|YP_638915.1| hypothetical protein Mmcs_1750 [Mycobacterium sp. MCS] gi|108769137|gb|ABG07859.1| conserved hypothetical protein [Mycobacterium sp. MCS] Length=287 Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/247 (52%), Positives = 165/247 (67%), Gaps = 0/247 (0%) Query 13 MTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVE 72 M AQL P L N + + + +QC +V++QP+ +P LW Y++GA +Y KHGVE Sbjct 39 MPAAQLDTPTPGLLELDRNPTWFDTASQCTIVLAQPSTEPELWAEYVRGAQLSYHKHGVE 98 Query 73 CTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRK 132 LD A+ G DT LF A I+ G VVGG R GP + D+ HAVVEW G PGL+AVRK Sbjct 99 RALDTGALERGDDTALFCAGINQAGQVVGGVRAKGPYTAVDECHAVVEWDGQPGLTAVRK 158 Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 M+ DR PFGVVE+KS WV+ D ++S A+ LAR SM LL QF + TAAA+ L+RW Sbjct 159 MVGDRLPFGVVEIKSAWVSDDPEQSRALTDVLARVPLHSMLLLEAQFAVATAAAYVLNRW 218 Query 193 RSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLRDVEALS 252 SSGGV+AA+IPA YPD RY+TKM+WWDRRT ANHA+PKQ+S E+R++ ++ + Sbjct 219 LSSGGVLAAKIPATPYPDARYQTKMMWWDRRTYANHADPKQVSTFFAETRQVTAQLDRIG 278 Query 253 ATTAATA 259 T+A A Sbjct 279 RLTSAAA 285 >gi|119867836|ref|YP_937788.1| hypothetical protein Mkms_1797 [Mycobacterium sp. KMS] gi|126434321|ref|YP_001070012.1| hypothetical protein Mjls_1731 [Mycobacterium sp. JLS] gi|119693925|gb|ABL90998.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126234121|gb|ABN97521.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=249 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/247 (52%), Positives = 165/247 (67%), Gaps = 0/247 (0%) Query 13 MTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVE 72 M AQL P L N + + + +QC +V++QP+ +P LW Y++GA +Y KHGVE Sbjct 1 MPAAQLDTPTPGLLELDRNPTWFDTASQCTIVLAQPSTEPELWAEYVRGAQLSYHKHGVE 60 Query 73 CTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRK 132 LD A+ G DT LF A I+ G VVGG R GP + D+ HAVVEW G PGL+AVRK Sbjct 61 RALDTGALERGDDTALFCAGINQAGQVVGGVRAKGPYTAVDECHAVVEWDGQPGLTAVRK 120 Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 M+ DR PFGVVE+KS WV+ D ++S A+ LAR SM LL QF + TAAA+ L+RW Sbjct 121 MVGDRLPFGVVEIKSAWVSDDPEQSRALTDVLARVPLHSMLLLEAQFAVATAAAYVLNRW 180 Query 193 RSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLRDVEALS 252 SSGGV+AA+IPA YPD RY+TKM+WWDRRT ANHA+PKQ+S E+R++ ++ + Sbjct 181 LSSGGVLAAKIPATPYPDARYQTKMMWWDRRTYANHADPKQVSTFFAETRQVTAQLDRIG 240 Query 253 ATTAATA 259 T+A A Sbjct 241 RLTSAAA 247 >gi|315445285|ref|YP_004078164.1| hypothetical protein Mspyr1_37240 [Mycobacterium sp. Spyr1] gi|315263588|gb|ADU00330.1| hypothetical protein Mspyr1_37240 [Mycobacterium sp. Spyr1] Length=249 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 112/239 (47%), Positives = 145/239 (61%), Gaps = 0/239 (0%) Query 13 MTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVE 72 MTT + A + +E+ S W QC +V + PA + LW Y +GA +Y KHGV Sbjct 1 MTTPEFHSAAFDRASLTESPSYWDPATQCTVVYATPARERELWRDYARGACASYEKHGVA 60 Query 73 CTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRK 132 LDLDA+ G DT LF A ++ G VVGG R GP RSAD+ HAV EW G G +AV K Sbjct 61 AALDLDALRTGHDTVLFAALVNSAGAVVGGLRARGPYRSADECHAVNEWDGQDGQAAVHK 120 Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 M+ DR PFGV E+K+ WV D + + A+AR +M+LL +QF++ TAA++ L RW Sbjct 121 MVTDRIPFGVAEMKTAWVTDDPDENRRLTTAIARTPLHAMTLLDIQFIVATAASYVLKRW 180 Query 193 RSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLRDVEAL 251 SSGG++A +IPA YPD RY TK+ WWDR T HAEP Q+S E R+L V L Sbjct 181 LSSGGLLATKIPATPYPDHRYDTKLAWWDRTTFTKHAEPSQVSAFFSEQRQLAETVPHL 239 >gi|145224954|ref|YP_001135632.1| hypothetical protein Mflv_4375 [Mycobacterium gilvum PYR-GCK] gi|145217440|gb|ABP46844.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=253 Score = 228 bits (581), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 112/239 (47%), Positives = 145/239 (61%), Gaps = 0/239 (0%) Query 13 MTTAQLRPIAPQKLHFSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVE 72 MTT + A + +E+ S W QC +V + PA + LW Y +GA +Y KHGV Sbjct 5 MTTPEFHSAAFDRASLTESPSYWDPATQCTVVYATPARERELWRDYARGACASYEKHGVA 64 Query 73 CTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRK 132 LDLDA+ G DT LF A ++ G VVGG R GP RSAD+ HAV EW G G +AV K Sbjct 65 AALDLDALRTGHDTVLFAALVNSAGAVVGGLRARGPYRSADECHAVNEWDGQDGQAAVHK 124 Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 M+ DR PFGV E+K+ WV D + + A+AR +M+LL +QF++ TAA++ L RW Sbjct 125 MVTDRIPFGVAEMKTAWVTDDPDENRRLTTAIARTPLHAMTLLDIQFIVATAASYVLKRW 184 Query 193 RSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLRDVEAL 251 SSGG++A +IPA YPD RY TK+ WWDR T HAEP Q+S E R+L V L Sbjct 185 LSSGGLLATKIPATPYPDHRYDTKLAWWDRTTFTKHAEPSQVSAFFSEQRQLAETVPHL 243 >gi|111022715|ref|YP_705687.1| hypothetical protein RHA1_ro05751 [Rhodococcus jostii RHA1] gi|110822245|gb|ABG97529.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=258 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 101/216 (47%), Positives = 131/216 (61%), Gaps = 0/216 (0%) Query 28 FSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQ 87 LSVW ++CR VV++P+ +PTLW YL+GAL Y K+G E L+ I G T Sbjct 20 LDRTLSVWDPRSECRFVVARPSDEPTLWEEYLEGALAGYRKYGAEKALEYQRIQAGDTTA 79 Query 88 LFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKS 147 LFF AI G V G R GP AD +HA+ EW +PG AVR+MI DR PFGVVE K Sbjct 80 LFFVAIAPDGSVAAGVRAQGPYLVADQAHAITEWGTDPGAPAVRRMIEDRLPFGVVEAKG 139 Query 148 GWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAA 207 WV A R + AL R SM LL VQF++ TAA+H LD WR++GGV+A I Sbjct 140 AWVADTAARRGELVGALGRIATFSMDLLDVQFMLATAASHVLDTWRTTGGVVADHIAPVP 199 Query 208 YPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRK 243 YPD+RY T+++WWDR AE QL+++L+ + + Sbjct 200 YPDDRYETRLMWWDRSRRRGRAESMQLAQLLLTTSR 235 >gi|226365222|ref|YP_002783005.1| hypothetical protein ROP_58130 [Rhodococcus opacus B4] gi|226243712|dbj|BAH54060.1| hypothetical protein [Rhodococcus opacus B4] Length=258 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/216 (47%), Positives = 130/216 (61%), Gaps = 0/216 (0%) Query 28 FSENLSVWVSDAQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQ 87 LS W ++CR VV++P +PTLW YL+GAL Y K+G E L+ I G T Sbjct 20 LDRTLSAWDPRSECRFVVARPEEEPTLWEAYLEGALAGYRKYGAEKALEYRRIQAGDTTA 79 Query 88 LFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKS 147 LF AID G V G R GP AD +HA+ EW + G AVR+MI DR PFGVVE K Sbjct 80 LFIVAIDPDGSVAAGVRAQGPYLVADQAHAITEWGTDAGAPAVRRMIEDRLPFGVVEAKG 139 Query 148 GWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAA 207 WV+ A R + AAL R SM LL VQF++ TAA+H LD WR++GGV+A I Sbjct 140 AWVSGSAARRGELVAALGRFATFSMDLLDVQFMLATAASHVLDTWRTTGGVVADHIAPVP 199 Query 208 YPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRK 243 YPD+RY T+++WWDR AE QL+++L+ + + Sbjct 200 YPDDRYETRLMWWDRSRRRGRAETMQLAQLLLTTSR 235 >gi|229492083|ref|ZP_04385893.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229320980|gb|EEN86791.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=286 Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 97/205 (48%), Positives = 125/205 (61%), Gaps = 1/205 (0%) Query 43 LVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVVGG 102 L++S PA D LW +L GA +Y +HG + LDL A+ +G+ T LF+A ++ G V+GG Sbjct 56 LILSTPAADRGLWEEFLHGAYESYCQHGAQAALDLSAVREGTSTSLFYALVE-QGRVIGG 114 Query 103 ARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAIAA 162 R GP A SHA+VEWAGN G +R I R P GVVE+KS WV+ +A R +A Sbjct 115 VRAQGPYTCASQSHALVEWAGNAGYVQIRNAIAARIPGGVVEMKSAWVSPNALRPQQLAG 174 Query 163 ALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWWDR 222 ALAR +M L ++VM TAA H L RW SSGG + +PA AYPD RYRT+++WWDR Sbjct 175 ALARVALPTMERLHSRYVMATAADHVLARWESSGGRVDPSVPATAYPDSRYRTRIMWWDR 234 Query 223 RTLANHAEPKQLSRMLVESRKLLRD 247 TL A+P RM E L R Sbjct 235 GTLHADADPIVWRRMWAEHEALCRS 259 >gi|229494649|ref|ZP_04388409.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229318442|gb|EEN84303.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=354 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 104/203 (52%), Positives = 130/203 (65%), Gaps = 0/203 (0%) Query 42 RLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVVG 101 RLV+S PA D LW+ YL GA +Y +HG + LD+ A+ DG T LF+A +D G VVG Sbjct 122 RLVLSYPATDDYLWDEYLSGAWESYRRHGAQAALDVPAVRDGVSTSLFYALVDGDGVVVG 181 Query 102 GARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAIA 161 G R GP A SHA+VEW GN L AVR+ I R P GVVE+KS WV+ ++ + ++ Sbjct 182 GVRAQGPYVCASQSHAMVEWTGNRALDAVRETIAARIPEGVVEMKSAWVSPGSRYAGKLS 241 Query 162 AALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWWD 221 AALAR +M L +FV+ TAA H L RW SSGG + RIPAAAYPD RYRT+M+WWD Sbjct 242 AALARVALPTMERLQSRFVLATAADHVLSRWESSGGRVDVRIPAAAYPDARYRTRMMWWD 301 Query 222 RRTLANHAEPKQLSRMLVESRKL 244 RR+L A+P M E R L Sbjct 302 RRSLRADADPAVWPLMWSEHRTL 324 >gi|258655341|ref|YP_003204497.1| hypothetical protein Namu_5242 [Nakamurella multipartita DSM 44233] gi|258558566|gb|ACV81508.1| hypothetical protein Namu_5242 [Nakamurella multipartita DSM 44233] Length=230 Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 91/203 (45%), Positives = 125/203 (62%), Gaps = 0/203 (0%) Query 42 RLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVVG 101 ++V ++PA P LW YL GA Y +HGVE LD D + +G T LF A++ G VVG Sbjct 16 QIVFARPATKPELWLDYLHGARATYRRHGVESALDYDRVRNGLSTALFAVALEPDGKVVG 75 Query 102 GARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAIA 161 G RV GP AD + A+ EWAG G +R+ I DR G VE+K+ WV+ D I Sbjct 76 GLRVQGPYARADQATAIGEWAGRAGSDELRRQIADRLSDGAVEIKAVWVDHDVPLHHEIT 135 Query 162 AALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWWD 221 A+AR + SM+LLGV++ TAA+HA+ RW S+G V++ + YPDERYRTK++WWD Sbjct 136 DAIARVIVHSMTLLGVRYAFCTAASHAIPRWESTGAVVSTDVTPVPYPDERYRTKLLWWD 195 Query 222 RRTLANHAEPKQLSRMLVESRKL 244 + + + P QL +L ESR+L Sbjct 196 QLCVYDTVAPGQLPALLRESRQL 218 >gi|258650471|ref|YP_003199627.1| hypothetical protein Namu_0205 [Nakamurella multipartita DSM 44233] gi|258553696|gb|ACV76638.1| hypothetical protein Namu_0205 [Nakamurella multipartita DSM 44233] Length=236 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 84/185 (46%), Positives = 114/185 (62%), Gaps = 0/185 (0%) Query 41 CRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVV 100 R V ++P P LWN YL GA Y + GVE L+ D I G+ T LF A +D G VV Sbjct 17 ARFVYARPEDQPELWNAYLDGAAENYRRFGVEHVLEYDDIRTGAGTTLFVAVLDRSGQVV 76 Query 101 GGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAI 160 G R GP DD+HA++EWAG PG +A+R+ I+ R G++E+K+GWV++D+ A+ Sbjct 77 AGVRAQGPYTDVDDAHALMEWAGRPGTAALREGISARIDEGLLELKAGWVSADSPDRHAL 136 Query 161 AAALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWW 220 ALAR + L+GV++ + T A HA+ RW+SSG I + AYPD RYRT IWW Sbjct 137 TPALARTVFHIFRLIGVRYALCTVADHAVRRWQSSGAQIGQDVAPVAYPDPRYRTVPIWW 196 Query 221 DRRTL 225 DR T+ Sbjct 197 DRETM 201 >gi|262201076|ref|YP_003272284.1| hypothetical protein Gbro_1082 [Gordonia bronchialis DSM 43247] gi|262084423|gb|ACY20391.1| hypothetical protein Gbro_1082 [Gordonia bronchialis DSM 43247] Length=248 Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 85/207 (42%), Positives = 126/207 (61%), Gaps = 1/207 (0%) Query 43 LVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVVGG 102 L+V+ P+ PT+W Y+ GA R+YS+HGV L+ + + DG +T+LF A +D V+GG Sbjct 31 LLVATPSSTPTVWADYIDGAYRSYSEHGVVDALEYETVRDGGNTRLFCAVLD-DDRVIGG 89 Query 103 ARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAIAA 162 R+ GP +SHA+ EWAG PG + + I R P G+VE KS +V++ + + +A Sbjct 90 LRIQGPYNLPTESHALTEWAGQPGQRQLIRAIATRIPGGLVEAKSAYVDTSSPAAAHVAG 149 Query 163 ALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWWDR 222 +AR + M+L G ++VM T+A H L RW+S GG I I YPD RYRT+ ++WDR Sbjct 150 LMARTPLIVMTLTGCRYVMATSADHVLKRWQSGGGRIDGAIEPTPYPDSRYRTRAMFWDR 209 Query 223 RTLANHAEPKQLSRMLVESRKLLRDVE 249 LA HA+P +M E ++ D+E Sbjct 210 TLLAQHADPTVWRQMQREFCQVEADLE 236 >gi|343925603|ref|ZP_08765120.1| hypothetical protein GOALK_048_00080 [Gordonia alkanivorans NBRC 16433] gi|343764393|dbj|GAA12046.1| hypothetical protein GOALK_048_00080 [Gordonia alkanivorans NBRC 16433] Length=231 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 79/203 (39%), Positives = 116/203 (58%), Gaps = 0/203 (0%) Query 39 AQCRLVVSQPALDPTLWNTYLQGALRAYSKHGVECTLDLDAISDGSDTQLFFAAIDIGGD 98 ++ ++ + P + LW+ YL GA +Y +HG LD D +S G+ T LFFA +D Sbjct 3 SEYTVIAAAPGRERALWDRYLNGAAASYERHGCAAALDYDEVSTGAGTALFFAVLDDADQ 62 Query 99 VVGGARVIGPLRSADDSHAVVEWAGNPGLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSD 158 V GG RV +A SHA+VEWAG PG + I R G+VEVK+ WV+ + + Sbjct 63 VRGGLRVQPRFSAAAQSHALVEWAGQPGQVQLVNAIESRLAGGIVEVKTAWVDESSPIAR 122 Query 159 AIAAALARALPLSMSLLGVQFVMGTAAAHALDRWRSSGGVIAARIPAAAYPDERYRTKMI 218 ++A L+R + M + G +M TAA H L RW+S GG + +P +PDERYRT+++ Sbjct 123 SVAGQLSRLGLVIMEMSGTDHMMATAADHVLRRWQSGGGRVDESVPPTPFPDERYRTRLM 182 Query 219 WWDRRTLANHAEPKQLSRMLVES 241 WWDR + H P+ RM +E+ Sbjct 183 WWDRARIREHTSPETWRRMRMEA 205 >gi|54026892|ref|YP_121134.1| hypothetical protein nfa49180 [Nocardia farcinica IFM 10152] gi|54018400|dbj|BAD59770.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=198 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 80/181 (45%), Positives = 108/181 (60%), Gaps = 1/181 (0%) Query 66 YSKHGVECTLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSADDSHAVVEWAGNP 125 Y ++GVE L+ D +SDG T LFFAA+D G +V G R GP RSA ++H + W G P Sbjct 2 YRQYGVESALEYDRVSDGRSTSLFFAAVDPEGAIVAGLRAQGPYRSAAEAHGLGAWTGRP 61 Query 126 GLSAVRKMINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAA 185 G +A+R MI DR GVVE K+ WV+ +A + AA+AR + S LLG ++ T A Sbjct 62 GEAALRTMIGDRIGEGVVEAKAVWVSREAAHRPHLGAAVARCVVHSAWLLGARWGFATTA 121 Query 186 AHALDRWRSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLL 245 H++ +RSSGG +A I YPDERYRT +WWD + HA Q + ++E R L Sbjct 122 EHSIALYRSSGGRVAGEIAPVPYPDERYRTVPLWWDTTSYRLHATRSQSALTMIE-RAAL 180 Query 246 R 246 R Sbjct 181 R 181 >gi|254775583|ref|ZP_05217099.1| hypothetical protein MaviaA2_13073 [Mycobacterium avium subsp. avium ATCC 25291] Length=118 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/119 (60%), Positives = 91/119 (77%), Gaps = 2/119 (1%) Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALAR-ALPLSMSLLGVQFVMGTAAAHALDR 191 MI +R PFGVVEVKS W NS + A++ LAR ALP +M+LLG QFVM TAAAH L++ Sbjct 1 MIANRIPFGVVEVKSAWTNSREYGNRALSTVLARTALP-TMTLLGAQFVMATAAAHVLEQ 59 Query 192 WRSSGGVIAARIPAAAYPDERYRTKMIWWDRRTLANHAEPKQLSRMLVESRKLLRDVEA 250 W+SSGGV+A+R+PAAAYP+E YRTK++WWDRRTLA HA+P Q M E+ ++L + A Sbjct 60 WQSSGGVVASRVPAAAYPNENYRTKVMWWDRRTLAAHADPAQFKLMCAENTEILSRLSA 118 >gi|326329545|ref|ZP_08195867.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1] gi|325952541|gb|EGD44559.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1] Length=367 Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust. Identities = 36/122 (30%), Positives = 53/122 (44%), Gaps = 12/122 (9%) Query 24 QKLHFSENLSVWVSDAQCRLVVSQP--ALDPTLWNTYLQGALRAYSKH--------GVEC 73 ++ F E LSV +S A L ++ P L P + N G A + H G EC Sbjct 237 EQARFGERLSVRLSVAPEVLPIAVPFLCLQPLVENAVRHGLADAQTGHISIRAADSGTEC 296 Query 74 TLDLDAISDGSDTQLFFAAIDIGGDVVGGARVIGPLRSA--DDSHAVVEWAGNPGLSAVR 131 ++++ G D + A+ G D VG V LR+A DD VVE A G + Sbjct 297 VIEVEDDGAGEDPEKVRNALAGGADSVGLGNVDARLRNAYGDDYGLVVETARGAGTKVIL 356 Query 132 KM 133 ++ Sbjct 357 RI 358 >gi|239986083|ref|ZP_04706747.1| CDA peptide synthetase I [Streptomyces roseosporus NRRL 11379] Length=3905 Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust. Identities = 24/67 (36%), Positives = 39/67 (59%), Gaps = 1/67 (1%) Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 ++ RA G V+V G V+ D++ S +++ AL +P S+ +GVQ V+ A A+ RW Sbjct 1239 LVGSRAVDGAVDVFGGVVSVDSRASVSVSRALLTEVP-SVLGVGVQEVLLAAFGLAVARW 1297 Query 193 RSSGGVI 199 R GG + Sbjct 1298 RGRGGPV 1304 >gi|60650933|gb|AAX31558.1| peptide synthetase 2 [Streptomyces roseosporus NRRL 11379] Length=7338 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 40/71 (57%), Gaps = 1/71 (1%) Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 ++ RA G V+V G V+ D++ S +++ AL +P S+ +GVQ V+ A A+ RW Sbjct 3386 LVGSRAVDGAVDVFGGVVSVDSRASVSVSRALLTEVP-SVLGVGVQEVLLAAFGLAVARW 3444 Query 193 RSSGGVIAARI 203 R GG + + Sbjct 3445 RGRGGPVVVDV 3455 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 40/71 (57%), Gaps = 1/71 (1%) Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 ++ RA G V+V G V+ D++ S +++ AL +P S+ +GVQ V+ A A+ RW Sbjct 7049 LVGSRAVDGAVDVFGGVVSVDSRASVSVSRALLTEVP-SVLGVGVQEVLLAAFGLAVARW 7107 Query 193 RSSGGVIAARI 203 R GG + + Sbjct 7108 RGRGGPVVVDV 7118 >gi|291442999|ref|ZP_06582389.1| peptide synthetase 2 [Streptomyces roseosporus NRRL 15998] gi|291345946|gb|EFE72850.1| peptide synthetase 2 [Streptomyces roseosporus NRRL 15998] Length=2946 Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 40/71 (57%), Gaps = 1/71 (1%) Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 ++ RA G V+V G V+ D++ S +++ AL +P S+ +GVQ V+ A A+ RW Sbjct 2266 LVGSRAVDGAVDVFGGVVSVDSRASVSVSRALLTEVP-SVLGVGVQEVLLAAFGLAVARW 2324 Query 193 RSSGGVIAARI 203 R GG + + Sbjct 2325 RGRGGPVVVDV 2335 >gi|291443022|ref|ZP_06582412.1| ATP-dependent tryptophan adenylase [Streptomyces roseosporus NRRL 15998] gi|291345969|gb|EFE72873.1| ATP-dependent tryptophan adenylase [Streptomyces roseosporus NRRL 15998] Length=1093 Score = 35.4 bits (80), Expect = 8.9, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 40/71 (57%), Gaps = 1/71 (1%) Query 133 MINDRAPFGVVEVKSGWVNSDAQRSDAIAAALARALPLSMSLLGVQFVMGTAAAHALDRW 192 ++ RA G V+V G V+ D++ S +++ AL +P S+ +GVQ V+ A A+ RW Sbjct 805 LVGSRAVDGAVDVFGGVVSVDSRASVSVSRALLTEVP-SVLGVGVQEVLLAAFGLAVARW 863 Query 193 RSSGGVIAARI 203 R GG + + Sbjct 864 RGRGGPVVVDV 874 Lambda K H 0.319 0.131 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 394810015572 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40