BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1359

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840815|ref|NP_335852.1|  hypothetical protein MT1403 [Mycoba...   504    4e-141
gi|15608499|ref|NP_215875.1|  transcriptional regulatory protein ...   504    6e-141
gi|289569372|ref|ZP_06449599.1|  transcriptional regulator [Mycob...   501    4e-140
gi|31792555|ref|NP_855048.1|  transcriptional regulatory protein ...   501    5e-140
gi|339294337|gb|AEJ46448.1|  hypothetical protein CCDC5079_1258 [...   405    4e-111
gi|254819266|ref|ZP_05224267.1|  regulatory protein, LuxR [Mycoba...   200    2e-49 
gi|240170120|ref|ZP_04748779.1|  regulatory protein, LuxR [Mycoba...   200    2e-49 
gi|296169886|ref|ZP_06851498.1|  LuxR family transcriptional regu...   196    2e-48 
gi|296168206|ref|ZP_06850198.1|  LuxR family transcriptional regu...   182    6e-44 
gi|120406868|ref|YP_956697.1|  regulatory protein LuxR [Mycobacte...   175    5e-42 
gi|240173083|ref|ZP_04751741.1|  LuxR family transcriptional regu...   173    2e-41 
gi|254819180|ref|ZP_05224181.1|  regulatory protein, LuxR [Mycoba...   172    4e-41 
gi|240169124|ref|ZP_04747783.1|  transcriptional regulatory prote...   169    4e-40 
gi|183980157|ref|YP_001848448.1|  LuxR family transcriptional reg...   167    2e-39 
gi|289758620|ref|ZP_06517998.1|  transcriptional regulatory prote...   167    2e-39 
gi|339632514|ref|YP_004724156.1|  LuxR family transcriptional reg...   166    2e-39 
gi|308380381|ref|ZP_07669177.1|  putative transcriptional regulat...   166    2e-39 
gi|340627502|ref|YP_004745954.1|  putative transcriptional regula...   166    2e-39 
gi|15609625|ref|NP_217004.1|  LuxR family transcriptional regulat...   166    2e-39 
gi|294994407|ref|ZP_06800098.1|  LuxR family transcriptional regu...   166    2e-39 
gi|289444015|ref|ZP_06433759.1|  probable transcriptional regulat...   166    2e-39 
gi|121638369|ref|YP_978593.1|  LuxR family transcriptional regula...   166    2e-39 
gi|308369732|ref|ZP_07666794.1|  hypothetical protein TMBG_01027 ...   166    3e-39 
gi|289448131|ref|ZP_06437875.1|  LuxR family transcriptional regu...   165    5e-39 
gi|253798434|ref|YP_003031435.1|  transcriptional regulator, luxR...   165    5e-39 
gi|15842015|ref|NP_337052.1|  LuxR family transcriptional regulat...   165    6e-39 
gi|289575185|ref|ZP_06455412.1|  transcriptional regulator, luxR-...   165    6e-39 
gi|289445924|ref|ZP_06435668.1|  transcriptional regulator, luxR/...   164    2e-38 
gi|289748870|ref|ZP_06508248.1|  luxR family transcriptional regu...   164    2e-38 
gi|289756454|ref|ZP_06515832.1|  transcriptional regulator [Mycob...   163    2e-38 
gi|289752415|ref|ZP_06511793.1|  LuxR/UHPA family transcriptional...   163    2e-38 
gi|15607527|ref|NP_214900.1|  LuxR/UHPA family transcriptional re...   163    2e-38 
gi|289441765|ref|ZP_06431509.1|  transcriptional regulator, luxR/...   163    2e-38 
gi|289744083|ref|ZP_06503461.1|  LuxR family transcriptional regu...   163    2e-38 
gi|167966904|ref|ZP_02549181.1|  LuxR family transcriptional regu...   163    2e-38 
gi|254230743|ref|ZP_04924070.1|  hypothetical protein TBCG_00379 ...   163    2e-38 
gi|31791563|ref|NP_854056.1|  LuxR/UHPA family transcriptional re...   163    2e-38 
gi|308378752|ref|ZP_07483786.2|  transcriptional regulator [Mycob...   163    2e-38 
gi|15839770|ref|NP_334807.1|  LuxR family transcriptional regulat...   163    2e-38 
gi|148821582|ref|YP_001286336.1|  LuxR family transcriptional reg...   163    2e-38 
gi|15608031|ref|NP_215406.1|  transcriptional regulatory protein ...   163    2e-38 
gi|340625902|ref|YP_004744354.1|  luxr family transcriptional reg...   163    2e-38 
gi|15840309|ref|NP_335346.1|  hypothetical protein MT0915 [Mycoba...   163    3e-38 
gi|308231665|ref|ZP_07413354.2|  transcriptional regulator [Mycob...   162    3e-38 
gi|289572971|ref|ZP_06453198.1|  transcriptional regulator, luxR/...   162    4e-38 
gi|339295373|gb|AEJ47484.1|  putative transcriptional regulator, ...   162    4e-38 
gi|308231538|ref|ZP_07663879.1|  hypothetical protein TMAG_01645 ...   162    4e-38 
gi|308232152|ref|ZP_07415096.2|  putative transcriptional regulat...   162    4e-38 
gi|254363822|ref|ZP_04979868.1|  hypothetical transcriptional reg...   161    8e-38 
gi|167968337|ref|ZP_02550614.1|  hypothetical transcriptional reg...   151    8e-35 


>gi|15840815|ref|NP_335852.1| hypothetical protein MT1403 [Mycobacterium tuberculosis CDC1551]
 gi|254231609|ref|ZP_04924936.1| hypothetical protein TBCG_01340 [Mycobacterium tuberculosis C]
 gi|254364251|ref|ZP_04980297.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
 gi|13881011|gb|AAK45666.1| hypothetical protein MT1403 [Mycobacterium tuberculosis CDC1551]
 gi|124600668|gb|EAY59678.1| hypothetical protein TBCG_01340 [Mycobacterium tuberculosis C]
 gi|134149765|gb|EBA41810.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
Length=253

 Score =  504 bits (1299),  Expect = 4e-141, Method: Compositional matrix adjust.
 Identities = 250/250 (100%), Positives = 250/250 (100%), Gaps = 0/250 (0%)

Query  1    MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI
Sbjct  4    MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  63

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI
Sbjct  64   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  123

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP
Sbjct  124  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  183

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG  240
            MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG
Sbjct  184  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG  243

Query  241  CAAAGMVLAG  250
            CAAAGMVLAG
Sbjct  244  CAAAGMVLAG  253


>gi|15608499|ref|NP_215875.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|121637290|ref|YP_977513.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|148661148|ref|YP_001282671.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Ra]
 69 more sequence titles
 Length=250

 Score =  504 bits (1297),  Expect = 6e-141, Method: Compositional matrix adjust.
 Identities = 250/250 (100%), Positives = 250/250 (100%), Gaps = 0/250 (0%)

Query  1    MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI
Sbjct  1    MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI
Sbjct  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP
Sbjct  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG  240
            MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG
Sbjct  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG  240

Query  241  CAAAGMVLAG  250
            CAAAGMVLAG
Sbjct  241  CAAAGMVLAG  250


>gi|289569372|ref|ZP_06449599.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289543126|gb|EFD46774.1| transcriptional regulator [Mycobacterium tuberculosis T17]
Length=250

 Score =  501 bits (1289),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 248/250 (99%), Positives = 248/250 (99%), Gaps = 0/250 (0%)

Query  1    MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI
Sbjct  1    MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI
Sbjct  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMR WL GLRP
Sbjct  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRVWLFGLRP  180

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG  240
            MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG
Sbjct  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG  240

Query  241  CAAAGMVLAG  250
            CAAAGMVLAG
Sbjct  241  CAAAGMVLAG  250


>gi|31792555|ref|NP_855048.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|31618144|emb|CAD94255.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis 
AF2122/97]
Length=250

 Score =  501 bits (1289),  Expect = 5e-140, Method: Compositional matrix adjust.
 Identities = 249/250 (99%), Positives = 249/250 (99%), Gaps = 0/250 (0%)

Query  1    MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI
Sbjct  1    MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI
Sbjct  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP
Sbjct  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG  240
            MEGSPE HNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG
Sbjct  181  MEGSPERHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILVNVQVVPHWEGG  240

Query  241  CAAAGMVLAG  250
            CAAAGMVLAG
Sbjct  241  CAAAGMVLAG  250


>gi|339294337|gb|AEJ46448.1| hypothetical protein CCDC5079_1258 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297976|gb|AEJ50086.1| hypothetical protein CCDC5180_1249 [Mycobacterium tuberculosis 
CCDC5180]
Length=201

 Score =  405 bits (1040),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 201/201 (100%), Positives = 201/201 (100%), Gaps = 0/201 (0%)

Query  50   MRLWGVQSEAITAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELH  109
            MRLWGVQSEAITAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELH
Sbjct  1    MRLWGVQSEAITAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELH  60

Query  110  QAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRL  169
            QAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRL
Sbjct  61   QAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRL  120

Query  170  PMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILV  229
            PMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILV
Sbjct  121  PMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGIPYVGRILV  180

Query  230  NVQVVPHWEGGCAAAGMVLAG  250
            NVQVVPHWEGGCAAAGMVLAG
Sbjct  181  NVQVVPHWEGGCAAAGMVLAG  201


>gi|254819266|ref|ZP_05224267.1| regulatory protein, LuxR [Mycobacterium intracellulare ATCC 13950]
Length=1082

 Score =  200 bits (508),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 107/179 (60%), Positives = 128/179 (72%), Gaps = 5/179 (2%)

Query  39   VTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAH  97
            VTLL A VE   RLW  + E +TAA+V L++ V+  IA H GVR ++QG GD FVAAFA 
Sbjct  10   VTLLLADVEGSTRLWETRPEEMTAALVQLNKTVNEAIASHDGVRPLEQGEGDSFVAAFAR  69

Query  98   ASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVM  157
            ASDAVACALEL +APL+PI LRIGIHTGE QL D+  YAG T+N  A LRDLAHGGQTV+
Sbjct  70   ASDAVACALELQRAPLAPIRLRIGIHTGEIQLRDDANYAGPTINRTARLRDLAHGGQTVL  129

Query  158  SGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIA  216
            SG TE  V+ RLP   WL  L    GS    + P+ +R+ Q+CHP+LRN FPPLR+R A
Sbjct  130  SGVTESLVVDRLPEDVWLADL----GSHPLRDLPRPERVVQVCHPDLRNEFPPLRVRTA  184


>gi|240170120|ref|ZP_04748779.1| regulatory protein, LuxR [Mycobacterium kansasii ATCC 12478]
Length=1010

 Score =  200 bits (508),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 114/195 (59%), Positives = 134/195 (69%), Gaps = 11/195 (5%)

Query  39   VTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAH  97
            VTLL A VE   RLW  Q E +TAA+  L+R V   IA H GVR ++QG GD FVAAFA 
Sbjct  10   VTLLLADVEGSTRLWETQPETMTAALAQLNRTVDEAIAAHDGVRPLEQGEGDSFVAAFAR  69

Query  98   ASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVM  157
            ASDA+ACALEL +APL+PI LRIGIHTGE QL DE  YAG T+N  A LRDLAHGGQTV+
Sbjct  70   ASDALACALELQRAPLAPIRLRIGIHTGEIQLRDEANYAGPTINRTARLRDLAHGGQTVL  129

Query  158  SGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIAD  217
            SGATE  V+  LP   WL  L    G+    + P+ +R+ QLCHP+LRN FPPLR+R A 
Sbjct  130  SGATEPLVVDHLPDGVWLADL----GNHPLRDLPRPERVVQLCHPDLRNDFPPLRIRNAG  185

Query  218  AS-GIP-----YVGR  226
            AS  +P     +VGR
Sbjct  186  ASHNLPAQLTTFVGR  200


>gi|296169886|ref|ZP_06851498.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895442|gb|EFG75144.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=1109

 Score =  196 bits (498),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 112/214 (53%), Positives = 137/214 (65%), Gaps = 6/214 (2%)

Query  1    MFMALRAPMLERMNGLHTDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            MF    A ML  M+  H +   +NW E     L     VTLL A VE   RLW  Q E +
Sbjct  1    MFAWFAAAMLATMSQ-HAEMPSLNWNELGVSELLPTGTVTLLLADVEGSTRLWETQPEQM  59

Query  61   TAAMV-LSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLR  119
            TAA+  L++ V+  +  H GVR ++QG GD FVAAF+ ASDAVACAL + +APL+PI LR
Sbjct  60   TAALARLNKTVNDAVDAHAGVRPLEQGEGDSFVAAFSRASDAVACALAVQRAPLAPIRLR  119

Query  120  IGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLR  179
            IGIHTGE QL D+  YAG T+N  A LRDLAHGGQTV+SGATE  V+ RLP   WL  L 
Sbjct  120  IGIHTGEIQLRDDANYAGPTINRTARLRDLAHGGQTVLSGATESMVVDRLPDGVWLADL-  178

Query  180  PMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRM  213
               GS    + P+ +R+ QLCHP+L N FPPLR+
Sbjct  179  ---GSYPLRDLPRPERVVQLCHPDLANEFPPLRV  209


>gi|296168206|ref|ZP_06850198.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896822|gb|EFG76452.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=1102

 Score =  182 bits (461),  Expect = 6e-44, Method: Compositional matrix adjust.
 Identities = 102/193 (53%), Positives = 130/193 (68%), Gaps = 10/193 (5%)

Query  23   VNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAM-VLSRKVSAIIAGHCGVR  81
            ++W E+    L +   VTLL A VE   RLW  QS+ +TAA+  L++ V+ ++A H GVR
Sbjct  17   LDWSEQSVSELPTGT-VTLLLADVEGSTRLWETQSDTMTAALEQLNQTVNDLVAAHGGVR  75

Query  82   LVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMN  141
             V+QG GD FV AFA ASDAVACAL++  + L PI +RIG+HTGE QL D   YAG T+N
Sbjct  76   PVEQGEGDSFVLAFARASDAVACALQIQLSVLPPIRIRIGLHTGEVQLRDAGNYAGPTIN  135

Query  142  LAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWL--IGLRPMEGSPEGHNFPQSQRIAQL  199
              A LRDLAHGGQTV+SGATE  V+ RLP  AWL  +G+ P+       + P+ +R+ QL
Sbjct  136  RTARLRDLAHGGQTVLSGATEPLVIDRLPADAWLTELGVHPL------RDLPRPERVVQL  189

Query  200  CHPNLRNTFPPLR  212
             HP LRN FPPLR
Sbjct  190  NHPGLRNDFPPLR  202


>gi|120406868|ref|YP_956697.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1]
 gi|119959686|gb|ABM16691.1| regulatory protein, LuxR [Mycobacterium vanbaalenii PYR-1]
Length=1085

 Score =  175 bits (444),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 94/177 (54%), Positives = 117/177 (67%), Gaps = 5/177 (2%)

Query  39   VTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAH  97
            VTLL A V+   +LW  Q E +TAA+  L R ++ +++ H GVR V+QG GD FV AF  
Sbjct  10   VTLLLADVQGSTQLWETQPETMTAAVAQLDRTLTDLVSDHDGVRPVEQGEGDSFVVAFTR  69

Query  98   ASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVM  157
            ASDAVACAL L +APL+PI LRIG+HTGE +L DE  Y G T+N  A LR+LAHGGQTV+
Sbjct  70   ASDAVACALALQRAPLAPIRLRIGVHTGEVRLRDEGNYVGPTINRTARLRELAHGGQTVL  129

Query  158  SGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
            SG T D V   LP   WL  L    G+    + P+ +R+ QLCH +L N FPPLR R
Sbjct  130  SGTTSDLVADLLPDGGWLSDL----GTHRLRDLPRPERVVQLCHADLSNEFPPLRAR  182


>gi|240173083|ref|ZP_04751741.1| LuxR family transcriptional regulator [Mycobacterium kansasii 
ATCC 12478]
Length=1102

 Score =  173 bits (439),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 96/179 (54%), Positives = 115/179 (65%), Gaps = 9/179 (5%)

Query  39   VTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAH  97
            VTLL A +E   RLW      + AA+  L R VS  IA H GVR V+QG GD FV AFA 
Sbjct  23   VTLLLADIEGSTRLWDTHPGEMAAAITRLDRVVSEAIAAHDGVRPVEQGEGDSFVIAFAR  82

Query  98   ASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDER----IYAGATMNLAAELRDLAHGG  153
            ASDAVACA+ L +APL+PI LRIG+HTGE +L  +      Y G  +N  A LRDL HGG
Sbjct  83   ASDAVACAVRLQRAPLAPIRLRIGVHTGEVRLRSQTGGDANYVGPAINRTARLRDLGHGG  142

Query  154  QTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLR  212
            QTV+SG T D V+ +LP  AWL  L    GS    + P+ +R+ QLCHP+LRN FPPLR
Sbjct  143  QTVLSGTTSDLVVDQLPTDAWLADL----GSYPLRDLPRPERVVQLCHPDLRNDFPPLR  197


>gi|254819180|ref|ZP_05224181.1| regulatory protein, LuxR [Mycobacterium intracellulare ATCC 13950]
Length=689

 Score =  172 bits (436),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 93/177 (53%), Positives = 117/177 (67%), Gaps = 5/177 (2%)

Query  39   VTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAH  97
            VTLL A V+   +LWG Q   +TAA+  L + ++ ++  H G+R V+QG GD FV AF+ 
Sbjct  10   VTLLLADVQGSTQLWGSQPREMTAAIAKLDQTLARLVGAHHGIRPVEQGEGDSFVIAFSR  69

Query  98   ASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVM  157
            ASDAVACAL L +APL+P+ LRIG+HTGE QL DE  Y G  +N  A LR+LAHGGQTV+
Sbjct  70   ASDAVACALALQRAPLAPLRLRIGVHTGEVQLRDENNYVGPAINRTARLRELAHGGQTVL  129

Query  158  SGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
            SG T D V   L   AWL  L    G     + P+ +R+ QLCHP+LRN FPPLR R
Sbjct  130  SGTTGDLVADTLADGAWLNDL----GIHALRDLPRPERVVQLCHPDLRNEFPPLRHR  182


>gi|240169124|ref|ZP_04747783.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 
12478]
Length=1092

 Score =  169 bits (428),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 89/172 (52%), Positives = 114/172 (67%), Gaps = 9/172 (5%)

Query  44   AGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAV  102
            A +E   RLW  Q   +  A+  L + V+  ++ H GVR V+QG GD FVAAF  A+DAV
Sbjct  21   ADIEGSTRLWHTQPAQMADAIKHLDQAVAEAVSAHGGVRPVEQGEGDSFVAAFGRAADAV  80

Query  103  ACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATE  162
            ACAL+L +A L PI LR+GIHTG+ QL D+  Y G T+N AA LRDLAHGGQT++S  T 
Sbjct  81   ACALQLQRAQLPPIRLRVGIHTGDVQLRDDSNYVGPTINRAARLRDLAHGGQTLLSATTS  140

Query  163  DAVLGRLPMRAWLI--GLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLR  212
            D V+  LP  AWLI  G++P+       + P+ +R+AQLCHP LRN FP LR
Sbjct  141  DIVIDELPADAWLIDLGIQPL------RDLPRPERVAQLCHPQLRNEFPGLR  186


>gi|183980157|ref|YP_001848448.1| LuxR family transcriptional regulator [Mycobacterium marinum 
M]
 gi|183173483|gb|ACC38593.1| transcriptional regulatory protein (LuxR- family) [Mycobacterium 
marinum M]
Length=1117

 Score =  167 bits (422),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 128/200 (64%), Gaps = 13/200 (6%)

Query  20   DAP-VNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGH  77
            +AP V+W +   G L     VTLL A VE   RLW  Q E +TAA+  L   ++  +A H
Sbjct  13   EAPLVDWSDVDMGELLPTGTVTLLLADVEGSTRLWQNQPEPMTAAVAHLDSVLATTVATH  72

Query  78   CGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERI---  134
             GVR V+QG GD FV AFA A +A+ACAL+L ++PL PI LRIG+HTG+ QL D      
Sbjct  73   HGVRPVEQGEGDSFVVAFASAREAIACALDLQRSPLGPIRLRIGVHTGDIQLRDPNDPTN  132

Query  135  YAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWL--IGLRPMEGSPEGHNFPQ  192
            Y G T+N  A +R+LAHGGQTV+SGAT+  V+ +LP  AWL  +GL P+       + P+
Sbjct  133  YIGPTINRTARIRELAHGGQTVISGATQLLVVDQLPDGAWLADLGLHPL------RDLPR  186

Query  193  SQRIAQLCHPNLRNTFPPLR  212
             +R+ QLCH  L+N FPPLR
Sbjct  187  PERVMQLCHSGLQNDFPPLR  206


>gi|289758620|ref|ZP_06517998.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
T85]
 gi|289714184|gb|EFD78196.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
T85]
Length=317

 Score =  167 bits (422),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 103/214 (49%), Positives = 127/214 (60%), Gaps = 8/214 (3%)

Query  4    ALRA-PMLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            ALRA  ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  
Sbjct  19   ALRAGSMLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLDT-  77

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRI
Sbjct  78   TAIAKLDRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRI  137

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            G+HTGE    DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L  
Sbjct  138  GMHTGEVSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL--  195

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              G+    + P+ +R+ QLCHP+L N FPPLR R
Sbjct  196  --GTYRLDDLPRPERVVQLCHPDLHNAFPPLRTR  227


>gi|339632514|ref|YP_004724156.1| LuxR family transcriptional regulator [Mycobacterium africanum 
GM041182]
 gi|339331870|emb|CCC27573.1| putative transcriptional regulatory protein (LUXR-family) [Mycobacterium 
africanum GM041182]
Length=1137

 Score =  166 bits (421),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 103/214 (49%), Positives = 127/214 (60%), Gaps = 8/214 (3%)

Query  4    ALRA-PMLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            ALRA  ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  
Sbjct  19   ALRAGSMLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-T  77

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRI
Sbjct  78   TAIAKLDRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRI  137

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            G+HTGE    DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L  
Sbjct  138  GMHTGEVSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL--  195

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              G+    + P+ +R+ QLCHP+L N FPPLR R
Sbjct  196  --GTYRLDDLPRPERVVQLCHPDLHNAFPPLRTR  227


>gi|308380381|ref|ZP_07669177.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu011]
 gi|308361672|gb|EFP50523.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu011]
Length=1199

 Score =  166 bits (421),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 103/214 (49%), Positives = 127/214 (60%), Gaps = 8/214 (3%)

Query  4    ALRA-PMLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            ALRA  ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  
Sbjct  81   ALRAGSMLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-T  139

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRI
Sbjct  140  TAIAKLDRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRI  199

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            G+HTGE    DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L  
Sbjct  200  GMHTGEVSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL--  257

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              G+    + P+ +R+ QLCHP+L N FPPLR R
Sbjct  258  --GTYRLDDLPRPERVVQLCHPDLHNAFPPLRTR  289


>gi|340627502|ref|YP_004745954.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
 gi|340005692|emb|CCC44858.1| putative transcriptional regulatory protein (LUXR-family) [Mycobacterium 
canettii CIPT 140010059]
Length=1114

 Score =  166 bits (421),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 109/233 (47%), Positives = 134/233 (58%), Gaps = 13/233 (5%)

Query  9    MLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMVL  66
            ML  M+ +H   D AP++W       L     VTLL A +E    L G Q +A TA   L
Sbjct  1    MLASMSEIHPGVDVAPLDWSADGVSELVPTGTVTLLLADIEGEPHLPGSQLDA-TAIANL  59

Query  67   SRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGE  126
             R +  ++  H GV  VDQG GD F+ AFA ASDAVACAL L +APL+PI LRIG+HTGE
Sbjct  60   DRTLIELVREHHGVCPVDQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGE  119

Query  127  AQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPE  186
                D     G+T+N  A LR+LAHGGQTV+SG T D V   LP  AWL  L    G+  
Sbjct  120  VSSPDGGNCVGSTINRTARLRELAHGGQTVLSGTTSDLVADLLPTDAWLNDL----GTYR  175

Query  187  GHNFPQSQRIAQLCHPNLRNTFPPLRMRIA-DASGIP-----YVGRILVNVQV  233
              + P+ +R+ QLCHP+L N FPPLR R A    G+P      VGR+    QV
Sbjct  176  LEDLPRPERVVQLCHPDLHNEFPPLRTRKAVGVHGLPAQLTRLVGRVDEVAQV  228


>gi|15609625|ref|NP_217004.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 gi|31793667|ref|NP_856160.1| LuxR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 gi|148662323|ref|YP_001283846.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
H37Ra]
 14 more sequence titles
 Length=1137

 Score =  166 bits (421),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 103/214 (49%), Positives = 127/214 (60%), Gaps = 8/214 (3%)

Query  4    ALRA-PMLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            ALRA  ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  
Sbjct  19   ALRAGSMLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-T  77

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRI
Sbjct  78   TAIAKLDRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRI  137

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            G+HTGE    DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L  
Sbjct  138  GMHTGEVSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL--  195

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              G+    + P+ +R+ QLCHP+L N FPPLR R
Sbjct  196  --GTYRLDDLPRPERVVQLCHPDLHNAFPPLRTR  227


>gi|294994407|ref|ZP_06800098.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
210]
 gi|326904100|gb|EGE51033.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
W-148]
Length=1137

 Score =  166 bits (421),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 103/214 (49%), Positives = 127/214 (60%), Gaps = 8/214 (3%)

Query  4    ALRA-PMLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            ALRA  ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  
Sbjct  19   ALRAGSMLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-T  77

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRI
Sbjct  78   TAIAKLDRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRI  137

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            G+HTGE    DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L  
Sbjct  138  GMHTGEVSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL--  195

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              G+    + P+ +R+ QLCHP+L N FPPLR R
Sbjct  196  --GTYRLDDLPRPERVVQLCHPDLHNAFPPLRTR  227


>gi|289444015|ref|ZP_06433759.1| probable transcriptional regulatory protein [Mycobacterium tuberculosis 
T46]
 gi|289416934|gb|EFD14174.1| probable transcriptional regulatory protein [Mycobacterium tuberculosis 
T46]
Length=474

 Score =  166 bits (421),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 99/208 (48%), Positives = 123/208 (60%), Gaps = 7/208 (3%)

Query  9    MLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMVL  66
            ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  TA   L
Sbjct  1    MLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLDT-TAIAKL  59

Query  67   SRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGE  126
             R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRIG+HTGE
Sbjct  60   DRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGE  119

Query  127  AQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPE  186
                DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L    G+  
Sbjct  120  VSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL----GTYR  175

Query  187  GHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              + P+ +R+ QLCHP+L N FPPLR R
Sbjct  176  LDDLPRPERVVQLCHPDLHNAFPPLRTR  203


>gi|121638369|ref|YP_978593.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|224990863|ref|YP_002645550.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Tokyo 172]
 gi|121494017|emb|CAL72495.1| Probable transcriptional regulatory protein (luxR-family) [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 gi|224773976|dbj|BAH26782.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Tokyo 172]
 gi|341602407|emb|CCC65083.1| probable transcriptional regulatory protein (luxR-family) [Mycobacterium 
bovis BCG str. Moreau RDJ]
Length=1137

 Score =  166 bits (421),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 103/214 (49%), Positives = 127/214 (60%), Gaps = 8/214 (3%)

Query  4    ALRA-PMLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            ALRA  ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  
Sbjct  19   ALRAGSMLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-T  77

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRI
Sbjct  78   TAIAKLDRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRI  137

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            G+HTGE    DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L  
Sbjct  138  GMHTGEVSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL--  195

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              G+    + P+ +R+ QLCHP+L N FPPLR R
Sbjct  196  --GTYRLDDLPRPERVVQLCHPDLHNAFPPLRTR  227


>gi|308369732|ref|ZP_07666794.1| hypothetical protein TMBG_01027 [Mycobacterium tuberculosis SUMu002]
 gi|308326619|gb|EFP15470.1| hypothetical protein TMBG_01027 [Mycobacterium tuberculosis SUMu002]
Length=935

 Score =  166 bits (420),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/214 (49%), Positives = 127/214 (60%), Gaps = 8/214 (3%)

Query  4    ALRA-PMLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            ALRA  ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  
Sbjct  81   ALRAGSMLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-T  139

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRI
Sbjct  140  TAIAKLDRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRI  199

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            G+HTGE    DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L  
Sbjct  200  GMHTGEVSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL--  257

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              G+    + P+ +R+ QLCHP+L N FPPLR R
Sbjct  258  --GTYRLDDLPRPERVVQLCHPDLHNAFPPLRTR  289


>gi|289448131|ref|ZP_06437875.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
CPHL_A]
 gi|289421089|gb|EFD18290.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
CPHL_A]
Length=659

 Score =  165 bits (418),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 99/208 (48%), Positives = 123/208 (60%), Gaps = 7/208 (3%)

Query  9    MLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMVL  66
            ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  TA   L
Sbjct  1    MLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLDT-TAIAKL  59

Query  67   SRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGE  126
             R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRIG+HTGE
Sbjct  60   DRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGE  119

Query  127  AQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPE  186
                DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L    G+  
Sbjct  120  VSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL----GTYR  175

Query  187  GHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              + P+ +R+ QLCHP+L N FPPLR R
Sbjct  176  LDDLPRPERVVQLCHPDLHNAFPPLRTR  203


>gi|253798434|ref|YP_003031435.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 1435]
 gi|289553722|ref|ZP_06442932.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 605]
 gi|297635092|ref|ZP_06952872.1| transcriptional regulator, luxR-family protein [Mycobacterium 
tuberculosis KZN 4207]
 gi|297732083|ref|ZP_06961201.1| transcriptional regulator, luxR-family protein [Mycobacterium 
tuberculosis KZN R506]
 gi|313659419|ref|ZP_07816299.1| transcriptional regulator, luxR-family protein [Mycobacterium 
tuberculosis KZN V2475]
 gi|253319937|gb|ACT24540.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 1435]
 gi|289438354|gb|EFD20847.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 605]
 gi|328458202|gb|AEB03625.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
KZN 4207]
Length=1137

 Score =  165 bits (418),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 103/214 (49%), Positives = 126/214 (59%), Gaps = 8/214 (3%)

Query  4    ALRA-PMLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            ALRA  ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  
Sbjct  19   ALRAGSMLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-T  77

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRI
Sbjct  78   TAIAKLDRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRI  137

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            G+HTGE    DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L  
Sbjct  138  GMHTGEVSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL--  195

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              G+    + P+ +R+ QLCHP L N FPPLR R
Sbjct  196  --GTYRLDDLPRPERVVQLCHPGLHNAFPPLRTR  227


>gi|15842015|ref|NP_337052.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|289746269|ref|ZP_06505647.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis 
02_1987]
 gi|308372247|ref|ZP_07427963.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu004]
 6 more sequence titles
 Length=1113

 Score =  165 bits (418),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 99/208 (48%), Positives = 123/208 (60%), Gaps = 7/208 (3%)

Query  9    MLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMVL  66
            ML  M+ +H   D  PV+W       L     VTLL A +E    L G Q +  TA   L
Sbjct  1    MLASMSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-TTAIAKL  59

Query  67   SRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGE  126
             R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRIG+HTGE
Sbjct  60   DRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGE  119

Query  127  AQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPE  186
                DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L    G+  
Sbjct  120  VSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL----GTYR  175

Query  187  GHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              + P+ +R+ QLCHP+L N FPPLR R
Sbjct  176  LDDLPRPERVVQLCHPDLHNAFPPLRTR  203


>gi|289575185|ref|ZP_06455412.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
K85]
 gi|289539616|gb|EFD44194.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis 
K85]
Length=1137

 Score =  165 bits (417),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 102/214 (48%), Positives = 127/214 (60%), Gaps = 8/214 (3%)

Query  4    ALRA-PMLERMNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAI  60
            ALRA  ML  M+ +H   D  P++W       L     VTLL A +E    L G Q +  
Sbjct  19   ALRAGSMLASMSKIHPGVDVVPMDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-T  77

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L R ++ ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRI
Sbjct  78   TAIAKLDRTLTELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRI  137

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRP  180
            G+HTGE    DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L  
Sbjct  138  GMHTGEVSSPDEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL--  195

Query  181  MEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMR  214
              G+    + P+ +R+ QLCHP+L N FPPLR R
Sbjct  196  --GTYRLDDLPRPERVVQLCHPDLHNAFPPLRTR  227


>gi|289445924|ref|ZP_06435668.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
CPHL_A]
 gi|289418882|gb|EFD16083.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
CPHL_A]
Length=1085

 Score =  164 bits (414),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  2    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  62   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  121

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  122  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  177

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  178  PLRVANDDVAHGLPVHLTRFVGR  200


>gi|289748870|ref|ZP_06508248.1| luxR family transcriptional regulator [Mycobacterium tuberculosis 
T92]
 gi|289689457|gb|EFD56886.1| luxR family transcriptional regulator [Mycobacterium tuberculosis 
T92]
Length=846

 Score =  164 bits (414),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  9    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  68

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  69   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  128

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  129  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  184

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  185  PLRVANDDVAHGLPVHLTRFVGR  207


>gi|289756454|ref|ZP_06515832.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|289712018|gb|EFD76030.1| transcriptional regulator [Mycobacterium tuberculosis T85]
Length=943

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  9    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  68

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  69   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  128

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  129  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  184

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  185  PLRVANDDVAHGLPVHLTRFVGR  207


>gi|289752415|ref|ZP_06511793.1| LuxR/UHPA family transcriptional regulator [Mycobacterium tuberculosis 
EAS054]
 gi|289693002|gb|EFD60431.1| LuxR/UHPA family transcriptional regulator [Mycobacterium tuberculosis 
EAS054]
Length=1085

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  2    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  62   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  121

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  122  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  177

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  178  PLRVANDDVAHGLPVHLTRFVGR  200


>gi|15607527|ref|NP_214900.1| LuxR/UHPA family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 gi|121636299|ref|YP_976522.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|148660152|ref|YP_001281675.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
H37Ra]
 43 more sequence titles
 Length=1085

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  2    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  62   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  121

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  122  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  177

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  178  PLRVANDDVAHGLPVHLTRFVGR  200


>gi|289441765|ref|ZP_06431509.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
T46]
 gi|289414684|gb|EFD11924.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
T46]
Length=791

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  2    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  62   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  121

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  122  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  177

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  178  PLRVANDDVAHGLPVHLTRFVGR  200


>gi|289744083|ref|ZP_06503461.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
02_1987]
 gi|289684611|gb|EFD52099.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
02_1987]
Length=1085

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  2    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  62   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  121

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  122  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  177

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  178  PLRVANDDVAHGLPVHLTRFVGR  200


>gi|167966904|ref|ZP_02549181.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
H37Ra]
Length=1085

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  2    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  62   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  121

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  122  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  177

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  178  PLRVANDDVAHGLPVHLTRFVGR  200


>gi|254230743|ref|ZP_04924070.1| hypothetical protein TBCG_00379 [Mycobacterium tuberculosis C]
 gi|124599802|gb|EAY58812.1| hypothetical protein TBCG_00379 [Mycobacterium tuberculosis C]
Length=1090

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  2    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  62   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  121

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  122  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  177

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  178  PLRVANDDVAHGLPVHLTRFVGR  200


>gi|31791563|ref|NP_854056.1| LuxR/UHPA family transcriptional regulator [Mycobacterium bovis 
AF2122/97]
 gi|31617149|emb|CAD93256.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR/UHPA-FAMILY) 
[Mycobacterium bovis AF2122/97]
Length=1085

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  2    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  62   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  121

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  122  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  177

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  178  PLRVANDDVAHGLPVHLTRFVGR  200


>gi|308378752|ref|ZP_07483786.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308359264|gb|EFP48115.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
Length=204

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 98/205 (48%), Positives = 120/205 (59%), Gaps = 16/205 (7%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             RL     VTLL A VE    LW +  E +  A+  L   VS  I  H GV+ V +  GD
Sbjct  2    SRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FVAAF  ASDA ACAL+L +  L+PI LRIG+HTGE QL DE +Y G T+N  A LRDL
Sbjct  62   SFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRDL  120

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGL--RPMEGSPEGHNFPQSQRIAQLCHPNLRNT  207
            AHGGQ V+S AT D V GRLP  AWL+ L   P+ G       P+ + + QLCHP++R  
Sbjct  121  AHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRG------LPRPEWVMQLCHPDIREK  174

Query  208  FPPLRMRIADASGI------PYVGR  226
            FPPLR   +  + I       +VGR
Sbjct  175  FPPLRTAKSSPTSILPAQFTTFVGR  199


>gi|15839770|ref|NP_334807.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|13879898|gb|AAK44621.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis 
CDC1551]
Length=1092

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  9    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  68

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  69   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  128

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  129  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  184

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  185  PLRVANDDVAHGLPVHLTRFVGR  207


>gi|148821582|ref|YP_001286336.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 
F11]
 gi|148720109|gb|ABR04734.1| hypothetical transcriptional regulatory protein, luxR/uhpA-family 
[Mycobacterium tuberculosis F11]
Length=1085

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/203 (53%), Positives = 130/203 (65%), Gaps = 11/203 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD
Sbjct  2    SKLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGD  61

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDL
Sbjct  62   SFVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDL  121

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFP  209
            AHGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FP
Sbjct  122  AHGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFP  177

Query  210  PLRMRIAD-ASGIP-----YVGR  226
            PLR+   D A G+P     +VGR
Sbjct  178  PLRVANDDVAHGLPVHLTRFVGR  200


>gi|15608031|ref|NP_215406.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|148660669|ref|YP_001282192.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Ra]
 gi|1731384|sp|Q10551.1|Y891_MYCTU RecName: Full=Uncharacterized protein Rv0891c/MT0915
 gi|1314030|emb|CAA97397.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|148504821|gb|ABQ72630.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Ra]
Length=285

 Score =  163 bits (412),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 95/194 (49%), Positives = 116/194 (60%), Gaps = 10/194 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             RL     VTLL A VE    LW +  E +  A+  L   VS  I  H GV+ V +  GD
Sbjct  83   SRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGD  142

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FVAAF  ASDA ACAL+L +  L+PI LRIG+HTGE QL DE +Y G T+N  A LRDL
Sbjct  143  SFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRDL  201

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGL--RPMEGSPEGHNFPQSQRIAQLCHPNLRNT  207
            AHGGQ V+S AT D V GRLP  AWL+ L   P+ G       P+ + + QLCHP++R  
Sbjct  202  AHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRG------LPRPEWVMQLCHPDIREK  255

Query  208  FPPLRMRIADASGI  221
            FPPLR   +  + I
Sbjct  256  FPPLRTAKSSPTSI  269


>gi|340625902|ref|YP_004744354.1| luxr family transcriptional regulator [Mycobacterium canettii 
CIPT 140010059]
 gi|340004092|emb|CCC43229.1| luxr family transcriptional regulator [Mycobacterium canettii 
CIPT 140010059]
Length=1168

 Score =  163 bits (412),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 98/205 (48%), Positives = 120/205 (59%), Gaps = 16/205 (7%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             RL     VTLL A VE    LW +  E +  A+  L   VS  I  H GV+ V +  GD
Sbjct  83   SRLLPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGD  142

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FVAAF  ASDA ACAL+L +  L+PI LRIG+HTGE QL DE +Y G T+N  A LRDL
Sbjct  143  SFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRDL  201

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGL--RPMEGSPEGHNFPQSQRIAQLCHPNLRNT  207
            AHGGQ V+S AT D V GRLP  AWL+ L   P+ G       P+ + + QLCHP++R  
Sbjct  202  AHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRG------LPRPEWVMQLCHPDIREK  255

Query  208  FPPLRMRIADASGI------PYVGR  226
            FPPLR   +  + I       +VGR
Sbjct  256  FPPLRTAKSSPTSILPAQFTTFVGR  280


>gi|15840309|ref|NP_335346.1| hypothetical protein MT0915 [Mycobacterium tuberculosis CDC1551]
 gi|31792079|ref|NP_854572.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|121636814|ref|YP_977037.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 42 more sequence titles
 Length=285

 Score =  163 bits (412),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 95/194 (49%), Positives = 116/194 (60%), Gaps = 10/194 (5%)

Query  31   GRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGD  89
             RL     VTLL A VE    LW +  E +  A+  L   VS  I  H GV+ V +  GD
Sbjct  83   SRLPPTGTVTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGD  142

Query  90   GFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDL  149
             FVAAF  ASDA ACAL+L +  L+PI LRIG+HTGE QL DE +Y G T+N  A LRDL
Sbjct  143  SFVAAFTRASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRDL  201

Query  150  AHGGQTVMSGATEDAVLGRLPMRAWLIGL--RPMEGSPEGHNFPQSQRIAQLCHPNLRNT  207
            AHGGQ V+S AT D V GRLP  AWL+ L   P+ G       P+ + + QLCHP++R  
Sbjct  202  AHGGQVVLSAATGDLVTGRLPADAWLVDLGRHPLRG------LPRPEWVMQLCHPDIREK  255

Query  208  FPPLRMRIADASGI  221
            FPPLR   +  + I
Sbjct  256  FPPLRTAKSSPTSI  269


>gi|308231665|ref|ZP_07413354.2| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308370132|ref|ZP_07420407.2| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308370529|ref|ZP_07421884.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 19 more sequence titles
 Length=201

 Score =  162 bits (411),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 96/197 (49%), Positives = 118/197 (60%), Gaps = 16/197 (8%)

Query  39   VTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAH  97
            VTLL A VE    LW +  E +  A+  L   VS  I  H GV+ V +  GD FVAAF  
Sbjct  7    VTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTR  66

Query  98   ASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVM  157
            ASDA ACAL+L +  L+PI LRIG+HTGE QL DE +Y G T+N  A LRDLAHGGQ V+
Sbjct  67   ASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRDLAHGGQVVL  125

Query  158  SGATEDAVLGRLPMRAWLIGL--RPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRI  215
            S AT D V GRLP  AWL+ L   P+ G       P+ + + QLCHP++R  FPPLR   
Sbjct  126  SAATGDLVTGRLPADAWLVDLGRHPLRG------LPRPEWVMQLCHPDIREKFPPLRTAK  179

Query  216  ADASGI------PYVGR  226
            +  + I       +VGR
Sbjct  180  SSPTSILPAQFTTFVGR  196


>gi|289572971|ref|ZP_06453198.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
K85]
 gi|289537402|gb|EFD41980.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis 
K85]
Length=486

 Score =  162 bits (411),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 106/202 (53%), Positives = 130/202 (65%), Gaps = 11/202 (5%)

Query  32   RLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDG  90
            +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD 
Sbjct  3    KLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGDS  62

Query  91   FVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLA  150
            FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDLA
Sbjct  63   FVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDLA  122

Query  151  HGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPP  210
            HGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FPP
Sbjct  123  HGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFPP  178

Query  211  LRMRIAD-ASGIP-----YVGR  226
            LR+   D A G+P     +VGR
Sbjct  179  LRVANDDVAHGLPVHLTRFVGR  200


>gi|339295373|gb|AEJ47484.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis CCDC5079]
 gi|339298993|gb|AEJ51103.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis CCDC5180]
Length=1109

 Score =  162 bits (410),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 97/204 (48%), Positives = 121/204 (60%), Gaps = 7/204 (3%)

Query  13   MNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMVLSRKV  70
            M+ +H   D  PV+W       L     VTLL A +E    L G Q +  TA   L R +
Sbjct  1    MSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-TTAIAKLDRTL  59

Query  71   SAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLV  130
            + ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRIG+HTGE    
Sbjct  60   TELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSP  119

Query  131  DERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNF  190
            DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L    G+    + 
Sbjct  120  DEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL----GTYRLDDL  175

Query  191  PQSQRIAQLCHPNLRNTFPPLRMR  214
            P+ +R+ QLCHP+L N FPPLR R
Sbjct  176  PRPERVVQLCHPDLHNAFPPLRTR  199


>gi|308231538|ref|ZP_07663879.1| hypothetical protein TMAG_01645 [Mycobacterium tuberculosis SUMu001]
 gi|308216985|gb|EFO76384.1| hypothetical protein TMAG_01645 [Mycobacterium tuberculosis SUMu001]
Length=317

 Score =  162 bits (410),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 106/202 (53%), Positives = 130/202 (65%), Gaps = 11/202 (5%)

Query  32   RLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDG  90
            +L  R  VTLL A VE    LW    + + AA+  L + VS +IA H GVR V+QG GD 
Sbjct  3    KLLPRGTVTLLLADVEGSTWLWETHPDDMGAAVARLDKAVSGVIAAHDGVRPVEQGEGDS  62

Query  91   FVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLA  150
            FV AFA ASDAVA AL+L +A L+PI LRIG+HTGE  L DE  YAG T+N  A LRDLA
Sbjct  63   FVLAFACASDAVAAALDLQRARLAPIRLRIGVHTGEVALRDEGNYAGPTINRTARLRDLA  122

Query  151  HGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPP  210
            HGGQTV+SG TE  V+ RLP +AWL+ L    G+    +  + +R+ QLCHP LR  FPP
Sbjct  123  HGGQTVLSGVTESLVIDRLPDKAWLVDL----GTHALRDLSRPERVMQLCHPELRIDFPP  178

Query  211  LRMRIAD-ASGIP-----YVGR  226
            LR+   D A G+P     +VGR
Sbjct  179  LRVANDDVAHGLPVHLTRFVGR  200


>gi|308232152|ref|ZP_07415096.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu001]
 gi|308371029|ref|ZP_07423604.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu003]
 gi|308373427|ref|ZP_07432269.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu005]
 gi|308374593|ref|ZP_07436663.2| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu006]
 gi|308214848|gb|EFO74247.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu001]
 gi|308330043|gb|EFP18894.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu003]
 gi|308337687|gb|EFP26538.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu005]
 gi|308341368|gb|EFP30219.1| putative transcriptional regulator, LuxR family [Mycobacterium 
tuberculosis SUMu006]
Length=1109

 Score =  162 bits (410),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 97/204 (48%), Positives = 121/204 (60%), Gaps = 7/204 (3%)

Query  13   MNGLH--TDDAPVNWLERRGGRLTSRRRVTLLHAGVEHPMRLWGVQSEAITAAMVLSRKV  70
            M+ +H   D  PV+W       L     VTLL A +E    L G Q +  TA   L R +
Sbjct  1    MSKIHPGVDVVPVDWSADGVSELVPTGTVTLLLADIEGATHLPGSQLD-TTAIAKLDRTL  59

Query  71   SAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRIGIHTGEAQLV  130
            + ++  H GV  V+QG GD F+ AFA ASDAVACAL L +APL+PI LRIG+HTGE    
Sbjct  60   TELVREHRGVCPVEQGEGDSFLVAFARASDAVACALGLQRAPLAPIRLRIGMHTGEVSSP  119

Query  131  DERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGLRPMEGSPEGHNF  190
            DE    G T++  A LR+LAHGGQTV+SG T D V   LP  AWL  L    G+    + 
Sbjct  120  DEGNCVGPTIDRTARLRELAHGGQTVLSGTTSDLVADLLPKDAWLNDL----GTYRLDDL  175

Query  191  PQSQRIAQLCHPNLRNTFPPLRMR  214
            P+ +R+ QLCHP+L N FPPLR R
Sbjct  176  PRPERVVQLCHPDLHNAFPPLRTR  199


>gi|254363822|ref|ZP_04979868.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
 gi|134149336|gb|EBA41381.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
 gi|339293902|gb|AEJ46013.1| hypothetical protein CCDC5079_0823 [Mycobacterium tuberculosis 
CCDC5079]
Length=195

 Score =  161 bits (407),  Expect = 8e-38, Method: Compositional matrix adjust.
 Identities = 95/197 (49%), Positives = 118/197 (60%), Gaps = 16/197 (8%)

Query  39   VTLLHAGVEHPMRLWGVQSEAITAAMV-LSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAH  97
            +TLL A VE    LW +  E +  A+  L   VS  I  H GV+ V +  GD FVAAF  
Sbjct  1    MTLLLADVEESTHLWQMCPEDMATAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTR  60

Query  98   ASDAVACALELHQAPLSPIVLRIGIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVM  157
            ASDA ACAL+L +  L+PI LRIG+HTGE QL DE +Y G T+N  A LRDLAHGGQ V+
Sbjct  61   ASDAAACALDLQRTSLAPIRLRIGLHTGEVQLRDE-LYVGPTINRTARLRDLAHGGQVVL  119

Query  158  SGATEDAVLGRLPMRAWLIGL--RPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRI  215
            S AT D V GRLP  AWL+ L   P+ G       P+ + + QLCHP++R  FPPLR   
Sbjct  120  SAATGDLVTGRLPADAWLVDLGRHPLRG------LPRPEWVMQLCHPDIREKFPPLRTAK  173

Query  216  ADASGI------PYVGR  226
            +  + I       +VGR
Sbjct  174  SSPTSILPAQFTTFVGR  190


>gi|167968337|ref|ZP_02550614.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis H37Ra]
 gi|254549868|ref|ZP_05140315.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=179

 Score =  151 bits (382),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 106/174 (61%), Gaps = 15/174 (8%)

Query  61   TAAMVLSRKVSAIIAGHCGVRLVDQGVGDGFVAAFAHASDAVACALELHQAPLSPIVLRI  120
            TA   L   VS  I  H GV+ V +  GD FVAAF  ASDA ACAL+L +  L+PI LRI
Sbjct  8    TAIAHLDHTVSEAITNHGGVQPVKRYEGDSFVAAFTRASDAAACALDLQRTSLAPIRLRI  67

Query  121  GIHTGEAQLVDERIYAGATMNLAAELRDLAHGGQTVMSGATEDAVLGRLPMRAWLIGL--  178
            G+HTGE QL DE +Y G T+N  A LRDLAHGGQ V+S AT D V GRLP  AWL+ L  
Sbjct  68   GLHTGEVQLRDE-LYVGPTINRTARLRDLAHGGQVVLSAATGDLVTGRLPADAWLVDLGR  126

Query  179  RPMEGSPEGHNFPQSQRIAQLCHPNLRNTFPPLRMRIADASGI------PYVGR  226
             P+ G       P+ + + QLCHP++R  FPPLR   +  + I       +VGR
Sbjct  127  HPLRG------LPRPEWVMQLCHPDIREKFPPLRTAKSSPTSILPAQFTTFVGR  174



Lambda     K      H
   0.324    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 358945203960


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40