BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1364c Length=653 Score E Sequences producing significant alignments: (Bits) Value gi|57116853|ref|YP_177802.1| hypothetical protein Rv1364c [Mycob... 1305 0.0 gi|308231819|ref|ZP_07413882.2| hypothetical protein TMAG_03511 ... 1305 0.0 gi|148822586|ref|YP_001287340.1| hypothetical protein TBFG_11395... 1304 0.0 gi|31792560|ref|NP_855053.1| hypothetical protein Mb1399c [Mycob... 1303 0.0 gi|254231615|ref|ZP_04924942.1| conserved hypothetical protein [... 1303 0.0 gi|308370699|ref|ZP_07422417.2| hypothetical protein TMCG_00999 ... 1303 0.0 gi|15840822|ref|NP_335859.1| hypothetical protein MT1410 [Mycoba... 1303 0.0 gi|308369779|ref|ZP_07419032.2| hypothetical protein TMBG_01195 ... 1302 0.0 gi|340626380|ref|YP_004744832.1| hypothetical protein MCAN_13821... 1301 0.0 gi|289574031|ref|ZP_06454258.1| sensory box protein/anti-anti-si... 1301 0.0 gi|289761525|ref|ZP_06520903.1| conserved hypothetical protein [... 1300 0.0 gi|308375442|ref|ZP_07443933.2| hypothetical protein TMGG_01936 ... 1153 0.0 gi|183983963|ref|YP_001852254.1| regulator of sigma subunit, ant... 1024 0.0 gi|118619076|ref|YP_907408.1| regulator of sigma subunit, anti-a... 1018 0.0 gi|240170863|ref|ZP_04749522.1| regulator of sigma subunit, anti... 1009 0.0 gi|296170351|ref|ZP_06851942.1| sensory box protein/anti-anti-si... 1004 0.0 gi|118466995|ref|YP_880854.1| anti-anti-sigma factor [Mycobacter... 998 0.0 gi|254774443|ref|ZP_05215959.1| anti-anti-sigma factor [Mycobact... 998 0.0 gi|336461034|gb|EGO39914.1| serine phosphatase RsbU, regulator o... 997 0.0 gi|41408459|ref|NP_961295.1| hypothetical protein MAP2361 [Mycob... 995 0.0 gi|254823324|ref|ZP_05228325.1| hypothetical protein MintA_25574... 962 0.0 gi|289749920|ref|ZP_06509298.1| LOW QUALITY PROTEIN: conserved h... 923 0.0 gi|342857940|ref|ZP_08714596.1| regulator of sigma subunit, anti... 920 0.0 gi|311772038|pdb|3KE6|A Chain A, The Crystal Structure Of The Rs... 742 0.0 gi|258652298|ref|YP_003201454.1| PAS/PAC sensor protein [Nakamur... 334 4e-89 gi|299689062|pdb|3KX0|X Chain X, Crystal Structure Of The Pas Do... 324 3e-86 gi|307776403|pdb|3K3C|A Chain A, The N-Terminal Pas Domain Cryst... 320 4e-85 gi|307776407|pdb|3K3D|A Chain A, The N-Terminal Pas Domain Cryst... 296 8e-78 gi|332670735|ref|YP_004453743.1| putative PAS/PAC sensor protein... 243 8e-62 gi|332669717|ref|YP_004452725.1| protein serine/threonine phosph... 220 6e-55 gi|119716155|ref|YP_923120.1| stage II sporulation E family prot... 203 7e-50 gi|284988739|ref|YP_003407293.1| multi-sensor signal transductio... 190 6e-46 gi|331694426|ref|YP_004330665.1| putative PAS/PAC sensor protein... 182 1e-43 gi|312196948|ref|YP_004017009.1| multi-sensor signal transductio... 181 3e-43 gi|120404755|ref|YP_954584.1| putative GAF sensor protein [Mycob... 180 7e-43 gi|120402928|ref|YP_952757.1| multi-sensor signal transduction h... 178 3e-42 gi|118463715|ref|YP_881319.1| stage II sporulation protein E (Sp... 177 4e-42 gi|41408176|ref|NP_961012.1| hypothetical protein MAP2078c [Myco... 177 4e-42 gi|336461731|gb|EGO40592.1| serine phosphatase RsbU, regulator o... 177 4e-42 gi|315445373|ref|YP_004078252.1| PAS/PAC sensor hybrid histidine... 177 5e-42 gi|145225099|ref|YP_001135777.1| putative GAF sensor protein [My... 177 5e-42 gi|315445466|ref|YP_004078345.1| serine phosphatase RsbU, regula... 177 6e-42 gi|257057451|ref|YP_003135283.1| fused histidine kinase with GAF... 177 6e-42 gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine ... 176 8e-42 gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonosp... 176 8e-42 gi|145225002|ref|YP_001135680.1| multi-sensor signal transductio... 176 8e-42 gi|315505450|ref|YP_004084337.1| multi-sensor signal transductio... 176 1e-41 gi|254774822|ref|ZP_05216338.1| hypothetical protein MaviaA2_091... 175 2e-41 gi|302865950|ref|YP_003834587.1| stage II sporulation protein E ... 172 2e-40 gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine ... 172 2e-40 >gi|57116853|ref|YP_177802.1| hypothetical protein Rv1364c [Mycobacterium tuberculosis H37Rv] gi|148661154|ref|YP_001282677.1| hypothetical protein MRA_1373 [Mycobacterium tuberculosis H37Ra] gi|167969115|ref|ZP_02551392.1| sensory box protein/anti-anti-sigma factor [Mycobacterium tuberculosis H37Ra] gi|307083930|ref|ZP_07493043.1| hypothetical protein TMLG_03458 [Mycobacterium tuberculosis SUMu012] gi|1723069|sp|Q11034.1|Y1364_MYCTU RecName: Full=Uncharacterized protein Rv1364c/MT1410 gi|38490259|emb|CAE55380.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148505306|gb|ABQ73115.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] gi|308366418|gb|EFP55269.1| hypothetical protein TMLG_03458 [Mycobacterium tuberculosis SUMu012] Length=653 Score = 1305 bits (3378), Expect = 0.0, Method: Compositional matrix adjust. Identities = 653/653 (100%), Positives = 653/653 (100%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID Sbjct 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 >gi|308231819|ref|ZP_07413882.2| hypothetical protein TMAG_03511 [Mycobacterium tuberculosis SUMu001] gi|308378917|ref|ZP_07484315.2| hypothetical protein TMJG_03753 [Mycobacterium tuberculosis SUMu010] gi|308380055|ref|ZP_07488535.2| hypothetical protein TMKG_01868 [Mycobacterium tuberculosis SUMu011] gi|308215971|gb|EFO75370.1| hypothetical protein TMAG_03511 [Mycobacterium tuberculosis SUMu001] gi|308358833|gb|EFP47684.1| hypothetical protein TMJG_03753 [Mycobacterium tuberculosis SUMu010] gi|308362771|gb|EFP51622.1| hypothetical protein TMKG_01868 [Mycobacterium tuberculosis SUMu011] Length=674 Score = 1305 bits (3377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 653/653 (100%), Positives = 653/653 (100%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 22 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 81 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 82 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 141 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 142 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 201 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 202 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 261 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 262 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 321 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 322 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 381 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 382 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 441 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID Sbjct 442 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 501 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 502 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 561 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 562 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 621 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 622 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 674 >gi|148822586|ref|YP_001287340.1| hypothetical protein TBFG_11395 [Mycobacterium tuberculosis F11] gi|253799586|ref|YP_003032587.1| hypothetical protein TBMG_02614 [Mycobacterium tuberculosis KZN 1435] gi|254364256|ref|ZP_04980302.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] 30 more sequence titles Length=653 Score = 1304 bits (3374), Expect = 0.0, Method: Compositional matrix adjust. Identities = 652/653 (99%), Positives = 652/653 (99%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVID Sbjct 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVID 480 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 >gi|31792560|ref|NP_855053.1| hypothetical protein Mb1399c [Mycobacterium bovis AF2122/97] gi|121637295|ref|YP_977518.1| hypothetical protein BCG_1426c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989769|ref|YP_002644456.1| hypothetical protein JTY_1400 [Mycobacterium bovis BCG str. Tokyo 172] gi|31618149|emb|CAD94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121492942|emb|CAL71413.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772882|dbj|BAH25688.1| hypothetical protein JTY_1400 [Mycobacterium bovis BCG str. Tokyo 172] gi|341601313|emb|CCC63986.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=653 Score = 1303 bits (3373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 651/653 (99%), Positives = 651/653 (99%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQIS GYTV Sbjct 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISTGYTV 240 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVID Sbjct 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVID 480 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 >gi|254231615|ref|ZP_04924942.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|124600674|gb|EAY59684.1| conserved hypothetical protein [Mycobacterium tuberculosis C] Length=653 Score = 1303 bits (3373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 651/653 (99%), Positives = 651/653 (99%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVID Sbjct 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVID 480 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGI PVTIDLSAVTHLGS Sbjct 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGITPVTIDLSAVTHLGS 600 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 >gi|308370699|ref|ZP_07422417.2| hypothetical protein TMCG_00999 [Mycobacterium tuberculosis SUMu003] gi|308371947|ref|ZP_07426784.2| hypothetical protein TMDG_03480 [Mycobacterium tuberculosis SUMu004] gi|308373120|ref|ZP_07431090.2| hypothetical protein TMEG_01268 [Mycobacterium tuberculosis SUMu005] gi|308374293|ref|ZP_07435490.2| hypothetical protein TMFG_02558 [Mycobacterium tuberculosis SUMu006] gi|308331163|gb|EFP20014.1| hypothetical protein TMCG_00999 [Mycobacterium tuberculosis SUMu003] gi|308334945|gb|EFP23796.1| hypothetical protein TMDG_03480 [Mycobacterium tuberculosis SUMu004] gi|308338750|gb|EFP27601.1| hypothetical protein TMEG_01268 [Mycobacterium tuberculosis SUMu005] gi|308342449|gb|EFP31300.1| hypothetical protein TMFG_02558 [Mycobacterium tuberculosis SUMu006] Length=674 Score = 1303 bits (3372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 652/653 (99%), Positives = 652/653 (99%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 22 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 81 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 82 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 141 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 142 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 201 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 202 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 261 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 262 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 321 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 322 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 381 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 382 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 441 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVID Sbjct 442 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVID 501 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 502 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 561 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 562 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 621 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 622 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 674 >gi|15840822|ref|NP_335859.1| hypothetical protein MT1410 [Mycobacterium tuberculosis CDC1551] gi|13881019|gb|AAK45673.1| sensory box protein/anti-anti-sigma factor [Mycobacterium tuberculosis CDC1551] Length=681 Score = 1303 bits (3372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 652/653 (99%), Positives = 652/653 (99%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 29 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 88 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 89 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 148 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 149 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 208 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 209 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 268 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 269 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 328 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 329 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 388 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 389 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 448 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVID Sbjct 449 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVID 508 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 509 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 568 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 569 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 628 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 629 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 681 >gi|308369779|ref|ZP_07419032.2| hypothetical protein TMBG_01195 [Mycobacterium tuberculosis SUMu002] gi|308377707|ref|ZP_07480124.2| hypothetical protein TMIG_03048 [Mycobacterium tuberculosis SUMu009] gi|308326440|gb|EFP15291.1| hypothetical protein TMBG_01195 [Mycobacterium tuberculosis SUMu002] gi|308354860|gb|EFP43711.1| hypothetical protein TMIG_03048 [Mycobacterium tuberculosis SUMu009] Length=677 Score = 1302 bits (3370), Expect = 0.0, Method: Compositional matrix adjust. Identities = 652/653 (99%), Positives = 652/653 (99%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 25 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 84 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 85 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 144 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 145 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 204 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 205 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 264 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 265 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 324 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 325 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 384 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 385 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 444 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVID Sbjct 445 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVID 504 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 505 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 564 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 565 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 624 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 625 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 677 >gi|340626380|ref|YP_004744832.1| hypothetical protein MCAN_13821 [Mycobacterium canettii CIPT 140010059] gi|340004570|emb|CCC43714.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=653 Score = 1301 bits (3367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 650/653 (99%), Positives = 650/653 (99%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVID Sbjct 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVID 480 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 FQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 541 TFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGV ALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 601 AGVSALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 >gi|289574031|ref|ZP_06454258.1| sensory box protein/anti-anti-sigma factor [Mycobacterium tuberculosis K85] gi|339631433|ref|YP_004723075.1| hypothetical protein MAF_13880 [Mycobacterium africanum GM041182] gi|289538462|gb|EFD43040.1| sensory box protein/anti-anti-sigma factor [Mycobacterium tuberculosis K85] gi|339330789|emb|CCC26460.1| conserved hypothetical protein [Mycobacterium africanum GM041182] Length=653 Score = 1301 bits (3366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 651/653 (99%), Positives = 651/653 (99%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVID Sbjct 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVID 480 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDH DGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 481 RGQWKDHCDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 >gi|289761525|ref|ZP_06520903.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289709031|gb|EFD73047.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=653 Score = 1300 bits (3364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 650/653 (99%), Positives = 650/653 (99%), Gaps = 0/653 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA Sbjct 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV Sbjct 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG Sbjct 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGSGTGFPVRSEVLNIGD ILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV Sbjct 301 AGPLGSGTGFPVRSEVLNIGDTILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ Sbjct 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWLAEIGADH DIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVID Sbjct 421 LREWLAEIGADHPDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVID 480 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA Sbjct 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 Query 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS Sbjct 541 AFQQTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGS 600 Query 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 601 AGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 >gi|308375442|ref|ZP_07443933.2| hypothetical protein TMGG_01936 [Mycobacterium tuberculosis SUMu007] gi|308376702|ref|ZP_07439737.2| hypothetical protein TMHG_00552 [Mycobacterium tuberculosis SUMu008] gi|308346289|gb|EFP35140.1| hypothetical protein TMGG_01936 [Mycobacterium tuberculosis SUMu007] gi|308350217|gb|EFP39068.1| hypothetical protein TMHG_00552 [Mycobacterium tuberculosis SUMu008] Length=580 Score = 1153 bits (2982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 579/580 (99%), Positives = 579/580 (99%), Gaps = 0/580 (0%) Query 74 MLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSR 133 MLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSR Sbjct 1 MLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSR 60 Query 134 VRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGG 193 VRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGG Sbjct 61 VRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGG 120 Query 194 DWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQ 253 DWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQ Sbjct 121 DWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQ 180 Query 254 VPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVR 313 VPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVR Sbjct 181 VPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVR 240 Query 314 SEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCS 373 SEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCS Sbjct 241 SEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCS 300 Query 374 DTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHS 433 DTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHS Sbjct 301 DTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHS 360 Query 434 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARG 493 DIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVIDRGQWKDHRDGARG Sbjct 361 DIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVIDRGQWKDHRDGARG 420 Query 494 RGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRAAFQQTIDSEFVSL 553 RGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRAAFQQTIDSEFVSL Sbjct 421 RGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRAAFQQTIDSEFVSL 480 Query 554 VESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGSAGVGALAAACDRA 613 VESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGSAGVGALAAACDRA Sbjct 481 VESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGSAGVGALAAACDRA 540 Query 614 RKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 RKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 541 RKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 580 >gi|183983963|ref|YP_001852254.1| regulator of sigma subunit, anti-anti-sigma factor RsbU [Mycobacterium marinum M] gi|183177289|gb|ACC42399.1| regulator of sigma subunit, anti-anti-sigma factor RsbU [Mycobacterium marinum M] Length=653 Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/654 (79%), Positives = 582/654 (89%), Gaps = 2/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDK+VG A VRRIFE++P +LVGLEGP+HRFVA NAAYR FSP VGQPAR Sbjct 1 MAAEMDWDKSVGTANTVRRIFENVPTMLVGLEGPEHRFVAANAAYRRFSPTFTAVGQPAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELE QQIY MLDRVY+TGEPQSG+EWRLQ D+DGSG++ERYFDF+VTPRRR DGSI Sbjct 61 EVYPELESQQIYHMLDRVYETGEPQSGAEWRLQADFDGSGIDERYFDFLVTPRRREDGSI 120 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQ++ DDVT+RVRAR AAEARVEELSERYR++RDSA VMQQALLA SVPVV GADIAA Sbjct 121 EGVQILFDDVTTRVRARLAAEARVEELSERYRHLRDSAIVMQQALLAPSVPVVSGADIAA 180 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 +YLVAA+DTAAGGDWFDA+ALGDRLVL+VGDVVGHGVEAAAVMSQLRTALR+QI+AG ++ Sbjct 181 QYLVAAQDTAAGGDWFDAVALGDRLVLIVGDVVGHGVEAAAVMSQLRTALRLQIAAGRSI 240 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 EALEA+D FH+ VPGS SAT+CVGSLDFT+GEFQYCTAGHPPPL+VTA+A +RY+EP+G Sbjct 241 GEALEALDAFHEHVPGSNSATLCVGSLDFTTGEFQYCTAGHPPPLVVTAEAKSRYLEPSG 300 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGS TGFPVR+E++ +GD +L YTDGLIERPGRPL ASTAEFADLAA+I SG GGFV Sbjct 301 AGPLGSDTGFPVRTELIGVGDVVLLYTDGLIERPGRPLGASTAEFADLAANITSG-GGFV 359 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 +DA +RPIDRLCS+TLELLLRSTGYNDD+TLLA+QRRAPTPPL+IT DATI+AAR +R++ Sbjct 360 IDAQSRPIDRLCSETLELLLRSTGYNDDITLLAVQRRAPTPPLNITEDATIHAARAIRSR 419 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LR+WL+EIGAD SDI+DIVHAISEFVENAVEHGY+TDVS G+ VAAAL GDG +R +VID Sbjct 420 LRQWLSEIGADSSDISDIVHAISEFVENAVEHGYSTDVSDGLAVAAALGGDGKLRVAVID 479 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 G WK HR+G RGRGRGLAMAEALVSE + H GTTAT+ HRLSRPA+FVTD +V RA Sbjct 480 HGTWKHHREGERGRGRGLAMAEALVSETHVSHDGAGTTATVVHRLSRPAQFVTDPVVSRA 539 Query 541 AFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLG 599 + TIDSEF S V ESG IVVRGDVDS TA TLDRQIAVESRSGIA +TIDLSAVTHLG Sbjct 540 PNRPTIDSEFASTVTESGHIVVRGDVDSNTAPTLDRQIAVESRSGIASLTIDLSAVTHLG 599 Query 600 SAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 SAGV AL A DRARKQG CVL+APPGSPAHHVLSLVQ+PV+ +TE++FA++ Sbjct 600 SAGVSALVTARDRARKQGGRCVLMAPPGSPAHHVLSLVQIPVISGETENVFAED 653 >gi|118619076|ref|YP_907408.1| regulator of sigma subunit, anti-anti-sigma factor RsbU [Mycobacterium ulcerans Agy99] gi|118571186|gb|ABL05937.1| regulator of sigma subunit, anti-anti-sigma factor RsbU [Mycobacterium ulcerans Agy99] Length=677 Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/654 (78%), Positives = 578/654 (89%), Gaps = 2/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDK VG A VRRIFE++P +LVGLEGP+HRFVA NAAYR FSP VGQPAR Sbjct 25 MAAEMDWDKNVGTANTVRRIFENVPTMLVGLEGPEHRFVAANAAYRRFSPTFTAVGQPAR 84 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELE QQIY MLDRVY+TGEPQSG+EWRLQ D+DGSG++ERYFDF+VTPRRR DGSI Sbjct 85 EVYPELESQQIYHMLDRVYETGEPQSGAEWRLQADFDGSGIDERYFDFLVTPRRREDGSI 144 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQ++ DDVT+RVRAR AAEARVEELSERYR++RDSA VMQQALLA SVPVV G DIAA Sbjct 145 EGVQILFDDVTTRVRARLAAEARVEELSERYRHLRDSAIVMQQALLAPSVPVVSGPDIAA 204 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 +YLVAA+DTAAGGDWFDA+ALGDRLVL+VGDVVGHGVEAAAVMSQLRTALR+QI+AG ++ Sbjct 205 QYLVAAQDTAAGGDWFDAVALGDRLVLIVGDVVGHGVEAAAVMSQLRTALRLQIAAGRSI 264 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 EALEA+D FH+ VPGS SAT+CVGSLDFT+GEFQYCTAGHPPPL+VTA+A ARY+EP+G Sbjct 265 GEALEALDAFHEHVPGSNSATLCVGSLDFTTGEFQYCTAGHPPPLVVTAEAKARYLEPSG 324 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 AGPLGS TGFPVR+E++ +GD +L YTDGLIERPGRPL ASTAEFADLAA+I SG GGFV Sbjct 325 AGPLGSDTGFPVRTELIGVGDVVLLYTDGLIERPGRPLGASTAEFADLAANITSG-GGFV 383 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 +DA +RPIDRLCS+TLELLLRSTGYNDD+TLLA+QRRAPTPPL+IT DATI+AAR +R++ Sbjct 384 IDAQSRPIDRLCSETLELLLRSTGYNDDITLLAVQRRAPTPPLNITEDATIHAARAIRSR 443 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LR+WL+EIGAD DI+DIVHAISEFVENAVEHGY+TDVS G+ VAAAL GDG +R +VID Sbjct 444 LRQWLSEIGADSGDISDIVHAISEFVENAVEHGYSTDVSDGLAVAAALGGDGKLRVAVID 503 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 G WK HR+G RGRGRGLAMAEALVSE + H GTTAT+ HRLSRPA+FVTD +V RA Sbjct 504 HGTWKHHREGERGRGRGLAMAEALVSETHVSHDGAGTTATVVHRLSRPAQFVTDPVVSRA 563 Query 541 AFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLG 599 + IDSEF S V ESG IVVRGDVDS TA TLDRQIAVESRSGIA +TIDLSAVTHLG Sbjct 564 PNRPAIDSEFASTVTESGHIVVRGDVDSNTAPTLDRQIAVESRSGIASLTIDLSAVTHLG 623 Query 600 SAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 SAGV AL A DRARKQG CVL+APPGSPAHHVLSLVQ+PV+ +TE++FA++ Sbjct 624 SAGVSALVTARDRARKQGGRCVLMAPPGSPAHHVLSLVQIPVISGETENVFAED 677 >gi|240170863|ref|ZP_04749522.1| regulator of sigma subunit, anti-anti-sigma factor RsbU [Mycobacterium kansasii ATCC 12478] Length=653 Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/654 (77%), Positives = 571/654 (88%), Gaps = 2/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MA +MDWD+ VG AEDVRRIFE++PA+LVGLEGPDHRFVA NAAYR SP VGQ AR Sbjct 1 MAPDMDWDRKVGTAEDVRRIFENVPAMLVGLEGPDHRFVAANAAYRTLSPTFVGVGQLAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIY M DRVYQTGEPQSGSEWRLQ D+DGSG+EER+FDFVVTPRRRADGSI Sbjct 61 EVYPELEGQQIYHMFDRVYQTGEPQSGSEWRLQADFDGSGIEERFFDFVVTPRRRADGSI 120 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAA 180 EGVQ++ DDVTSRVR R AAEA+VEELSERYR+VRDSA VMQQALLA SVPVV GAD+ A Sbjct 121 EGVQILFDDVTSRVRERLAAEAQVEELSERYRHVRDSAIVMQQALLAPSVPVVSGADLTA 180 Query 181 EYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTV 240 +YLVAA DTAAGGDWFD +ALGDRLVL+VGDVVGHGVEAAAVMSQLRTALRMQ+ AG+T+ Sbjct 181 QYLVAARDTAAGGDWFDTVALGDRLVLIVGDVVGHGVEAAAVMSQLRTALRMQVWAGHTI 240 Query 241 VEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTG 300 VEAL+AV+ FH QVPGS SAT+CVGSLD +GEFQYCTAGHPPPLLVTADA +RY+EP+G Sbjct 241 VEALQAVEAFHDQVPGSTSATICVGSLDLATGEFQYCTAGHPPPLLVTADAKSRYLEPSG 300 Query 301 AGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFV 360 GPLGS TGFPVR+E+LNI D+I+ YTDGL+ERPGRPL ASTAEFA+LA +IASG GGFV Sbjct 301 GGPLGSATGFPVRTEMLNIDDSIMLYTDGLVERPGRPLGASTAEFAELATTIASG-GGFV 359 Query 361 LDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQ 420 +DA ARPIDRLCS+TLELLLRSTGYNDDVTLLA QRR P PPL +T DATI+AAR +RA+ Sbjct 360 IDAQARPIDRLCSETLELLLRSTGYNDDVTLLAAQRRIPAPPLCMTTDATIHAARRIRAR 419 Query 421 LREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVID 480 LREWL +IGAD +DI+D+VHAISEFVENAVEHGY T+V G+V+ A L G G +RASVID Sbjct 420 LREWLVQIGADSADISDVVHAISEFVENAVEHGYGTEVPDGLVIEATLDGHGKLRASVID 479 Query 481 RGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRA 540 RG WKDHR+G +GRGRGLAMA ALV E+ + H A GTTAT+THRLSRPA+FVTD +V R Sbjct 480 RGTWKDHREGEKGRGRGLAMAAALVGESHVRHDAEGTTATITHRLSRPAQFVTDAVVSRT 539 Query 541 AFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLG 599 AF ID+EFV+LV E GRI+VRGDVD+ A TLD QIAVESRSG+A +TIDLSAVTHLG Sbjct 540 AFPAAIDTEFVTLVAEPGRIIVRGDVDANAATTLDSQIAVESRSGLASLTIDLSAVTHLG 599 Query 600 SAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 SAGV AL AA DRARKQG +C L+APPGSPAHHVLSLV++PVV D E++FA++ Sbjct 600 SAGVAALVAARDRARKQGADCALMAPPGSPAHHVLSLVRIPVVSGDAENVFAED 653 >gi|296170351|ref|ZP_06851942.1| sensory box protein/anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895074|gb|EFG74793.1| sensory box protein/anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614] Length=654 Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/654 (77%), Positives = 573/654 (88%), Gaps = 3/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 M AE +WDKTVGAA+DVRRIF+++PA+LVGLEGPDHRFVAVNAAYR SP +D++G R Sbjct 1 MVAERNWDKTVGAADDVRRIFDNVPALLVGLEGPDHRFVAVNAAYRALSPPVDSIGLFVR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSG-VEERYFDFVVTPRRRADGS 119 EVYPELE QQI +M DRVY+TGEPQSG+EWR+Q D++GSG +E +FDF+VT RR D S Sbjct 61 EVYPELESQQILQMFDRVYETGEPQSGTEWRVQADFEGSGQAQEHFFDFIVTARRGDDDS 120 Query 120 IEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIA 179 IEGVQL DVT RVRAR+AAEAR+EELSERYRNVRDSATVMQQALLA SVPVVPGAD+A Sbjct 121 IEGVQLAFVDVTERVRAREAAEARMEELSERYRNVRDSATVMQQALLAPSVPVVPGADVA 180 Query 180 AEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYT 239 AEYLVAAEDT AGGDWFDA+ LGDRLVL+VGDVVGHGVEAAAVMSQLRTALRMQI AGY Sbjct 181 AEYLVAAEDTGAGGDWFDAVPLGDRLVLIVGDVVGHGVEAAAVMSQLRTALRMQIVAGYP 240 Query 240 VVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPT 299 V EAL AVDRFH+ VPGS+SAT+CVGSLDFT+GEFQYCTAGHPPPLLV + S RY+EP+ Sbjct 241 VAEALAAVDRFHEHVPGSRSATVCVGSLDFTTGEFQYCTAGHPPPLLVGGEGS-RYLEPS 299 Query 300 GAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGF 359 GAGPLGSGTGFPVR+E L+ GDA++ YTDGLIERPGRPL ASTAEFA+LAA+IA+G GGF Sbjct 300 GAGPLGSGTGFPVRTEFLDAGDAVMLYTDGLIERPGRPLMASTAEFAELAANIAAGQGGF 359 Query 360 VLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRA 419 V+ + AR IDR+CS+TLELLLR TGY+DD+TLLA QRR P PPL +TLDATI+AAR VR Sbjct 360 VIGSSARAIDRICSETLELLLRPTGYSDDITLLAAQRRTPPPPLQMTLDATIHAARAVRV 419 Query 420 QLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVI 479 +LR+WL+++GA DI+DIVHAISEFVENAVEHGYAT+VS G+VV A+LAGDGN+ ASV+ Sbjct 420 RLRQWLSDVGAASDDISDIVHAISEFVENAVEHGYATEVSDGVVVEASLAGDGNLYASVV 479 Query 480 DRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRR 539 D GQWKDHR+G +GRGRGLAMAEALVS A + HG GTTA+LTHRLSRPA FVTDT+V R Sbjct 480 DHGQWKDHREGEQGRGRGLAMAEALVSSAHVTHGPAGTTASLTHRLSRPANFVTDTLVTR 539 Query 540 AAFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHL 598 A Q++++SEF S+V E GRIVV GDVDS TA+TLDRQIAVESRSGIAP+TIDLSAVT L Sbjct 540 ADRQRSMNSEFASVVAEPGRIVVSGDVDSHTASTLDRQIAVESRSGIAPLTIDLSAVTQL 599 Query 599 GSAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQ 652 GSAGV ALAAA DRA++QG+E VLVAPPGSPAHHVLSLVQLPV G E++ A+ Sbjct 600 GSAGVSALAAARDRAQRQGSEYVLVAPPGSPAHHVLSLVQLPVAGGLAENLVAE 653 >gi|118466995|ref|YP_880854.1| anti-anti-sigma factor [Mycobacterium avium 104] gi|118168282|gb|ABK69179.1| anti-anti-sigma factor [Mycobacterium avium 104] Length=655 Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/654 (77%), Positives = 570/654 (88%), Gaps = 2/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 M AE DWD+ VGAA+DVRR+F+++PA+LVGLEGPDHRFVAVNAAYR SP +D +G AR Sbjct 1 MVAEKDWDRIVGAADDVRRVFDNVPALLVGLEGPDHRFVAVNAAYRALSPPVDPIGLLAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSG-VEERYFDFVVTPRRRADGS 119 EVYPELE QQI++M DRVYQTGEPQSG+EWR+Q D++G G +E +FDF+VTPRR DGS Sbjct 61 EVYPELESQQIFQMFDRVYQTGEPQSGTEWRVQADFEGVGKAQEHFFDFIVTPRRGDDGS 120 Query 120 IEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIA 179 IEGVQL DVT RVR R AAEAR+EELSERYRNVRDSATVMQQALLA SVPV PGAD+ Sbjct 121 IEGVQLAFVDVTDRVRNRMAAEARLEELSERYRNVRDSATVMQQALLAPSVPVTPGADVT 180 Query 180 AEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYT 239 AEYLVAA+DTAAGGDWFDA+ LGDRLVL+VGDVVGHGVEAAAVMSQLRTALRMQI AGY Sbjct 181 AEYLVAAQDTAAGGDWFDAIPLGDRLVLIVGDVVGHGVEAAAVMSQLRTALRMQILAGYP 240 Query 240 VVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPT 299 + EALEAVDRFHK VPGS SATMCVGSLDF SGEF YCTAGHPPPLLVTADA+ARYVEP+ Sbjct 241 IAEALEAVDRFHKHVPGSSSATMCVGSLDFGSGEFSYCTAGHPPPLLVTADATARYVEPS 300 Query 300 GAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGF 359 GAGPLGSGTGFPVR+E L++GD+IL YTDGLIERPGRPL ASTAEFADLAA+I SG GGF Sbjct 301 GAGPLGSGTGFPVRTEFLDVGDSILLYTDGLIERPGRPLGASTAEFADLAANIVSGQGGF 360 Query 360 VLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRA 419 V+++ R +DRLC++TLELLLRSTGY+DDVTLLA QRR P PPL++TLDATI+AARTVR Sbjct 361 VIESSVRTVDRLCAETLELLLRSTGYSDDVTLLAAQRRTPPPPLNLTLDATIHAARTVRT 420 Query 420 QLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVI 479 +LR+WL+++GAD DI+DIVHAISEFVENAVEHGYAT+V G+VV A LAGDGN+ ASVI Sbjct 421 RLRQWLSDVGADADDISDIVHAISEFVENAVEHGYATEVPDGVVVEAMLAGDGNLHASVI 480 Query 480 DRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRR 539 DRG+WKDHR+G GRGRGLAMAEALVSEA + HG GTTA++THRLSRPA FV D++V R Sbjct 481 DRGRWKDHREGETGRGRGLAMAEALVSEAHVSHGPEGTTASVTHRLSRPANFVADSLVSR 540 Query 540 AAFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHL 598 A +EFVS V E GRIVV GDVDS TA+TLDRQIAVESRSG+AP+T+DLSAVTHL Sbjct 541 AGDHGVRSAEFVSTVTEPGRIVVSGDVDSNTASTLDRQIAVESRSGVAPLTVDLSAVTHL 600 Query 599 GSAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQ 652 GSAGV ALAAA +RA +QG++ VLVAPPGSPAHHVLSLVQ+PVV E++ A+ Sbjct 601 GSAGVSALAAARERALRQGSDYVLVAPPGSPAHHVLSLVQIPVVSGLAENVVAE 654 >gi|254774443|ref|ZP_05215959.1| anti-anti-sigma factor [Mycobacterium avium subsp. avium ATCC 25291] Length=655 Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/654 (77%), Positives = 570/654 (88%), Gaps = 2/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 M AE DWD+ VGAA+DVRR+F+++PA+LVGLEGPDHRFVAVNAAYR SP +D +G AR Sbjct 1 MVAEKDWDRIVGAADDVRRVFDNVPALLVGLEGPDHRFVAVNAAYRALSPPVDPIGLLAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSG-VEERYFDFVVTPRRRADGS 119 EVYPELE QQI++M DRVYQTGEPQSG+EWR+Q D++G G +E +FDF+VTPRR DGS Sbjct 61 EVYPELESQQIFQMFDRVYQTGEPQSGTEWRVQADFEGVGKAQEHFFDFIVTPRRGDDGS 120 Query 120 IEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIA 179 IEGVQL DVT RVR R AAEAR+EELSERYRNVRDSATVMQQALLA SVPV PGAD+ Sbjct 121 IEGVQLAFVDVTDRVRNRMAAEARLEELSERYRNVRDSATVMQQALLAPSVPVTPGADVT 180 Query 180 AEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYT 239 AEYLVAA+DTAAGGDWFDA+ LGDRLVL+VGD+VGHGVEAAAVMSQLRTALRMQI AGY Sbjct 181 AEYLVAAQDTAAGGDWFDAIPLGDRLVLIVGDIVGHGVEAAAVMSQLRTALRMQILAGYP 240 Query 240 VVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPT 299 + EALEAVDRFHK VPGS SATMCVGSLDF SGEF YCTAGHPPPLLVTADA+ARYVEP+ Sbjct 241 IAEALEAVDRFHKHVPGSSSATMCVGSLDFGSGEFSYCTAGHPPPLLVTADATARYVEPS 300 Query 300 GAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGF 359 GAGPLGSGTGFPVR+E L++GD+IL YTDGLIERPGRPL ASTAEFADLAA+I SG GGF Sbjct 301 GAGPLGSGTGFPVRTEFLDVGDSILLYTDGLIERPGRPLGASTAEFADLAANIVSGQGGF 360 Query 360 VLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRA 419 V+++ R +DRLC++TLELLLRSTGY+DDVTLLA QRR P PPL++TLDATI+AARTVR Sbjct 361 VIESSVRTVDRLCAETLELLLRSTGYSDDVTLLAAQRRTPPPPLNLTLDATIHAARTVRT 420 Query 420 QLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVI 479 +LR+WL+++GAD DI+DIVHAISEFVENAVEHGYAT+V G+VV A LAGDGN+ ASVI Sbjct 421 RLRQWLSDVGADADDISDIVHAISEFVENAVEHGYATEVPDGVVVEAMLAGDGNLHASVI 480 Query 480 DRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRR 539 DRG+WKDHR+G GRGRGLAMAEALVSEA + HG GTTA++THRLSRPA FV D++V R Sbjct 481 DRGRWKDHREGETGRGRGLAMAEALVSEAHVSHGPEGTTASVTHRLSRPANFVADSLVSR 540 Query 540 AAFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHL 598 A +EFVS V E GRIVV GDVDS TA+TLDRQIAVESRSG+AP+T+DLSAVTHL Sbjct 541 AGDHGVRSAEFVSTVTEPGRIVVSGDVDSNTASTLDRQIAVESRSGVAPLTVDLSAVTHL 600 Query 599 GSAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQ 652 GSAGV ALAAA +RA +QG++ VLVAPPGSPAHHVLSLVQ+PVV E++ A+ Sbjct 601 GSAGVSALAAARERALRQGSDYVLVAPPGSPAHHVLSLVQIPVVSGLAENVVAE 654 >gi|336461034|gb|EGO39914.1| serine phosphatase RsbU, regulator of sigma subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=655 Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/654 (77%), Positives = 569/654 (88%), Gaps = 2/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 M AE DWD+ VGAA+DVRR+F+++PA+LVGLEGPDHRFVAVNAAYR SP +D +G AR Sbjct 1 MVAEKDWDRIVGAADDVRRVFDNVPALLVGLEGPDHRFVAVNAAYRALSPPVDPIGLLAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSG-VEERYFDFVVTPRRRADGS 119 EVYPELE QQI++M DRVYQTGEPQSG+EWR+Q D++G G +E +FDF+VTPRR DGS Sbjct 61 EVYPELESQQIFQMFDRVYQTGEPQSGTEWRVQADFEGVGKAQEHFFDFIVTPRRGDDGS 120 Query 120 IEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIA 179 IEGVQL DVT RVR R AAEAR+EELSERYRNVRDSATVMQQALLA SVPV PGAD+ Sbjct 121 IEGVQLAFVDVTDRVRNRMAAEARLEELSERYRNVRDSATVMQQALLAPSVPVTPGADVT 180 Query 180 AEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYT 239 AEYLVAA+DTAAGGDWFDA+ LGDRLVL+VGDVVGHGVEAAAVMSQLRTALRMQI AGY Sbjct 181 AEYLVAAQDTAAGGDWFDAIPLGDRLVLIVGDVVGHGVEAAAVMSQLRTALRMQILAGYP 240 Query 240 VVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPT 299 + EALEAVDRFHK VPGS SATMCVGSLDF SGEF YCTAGHPPPLLVTADA+ARYVEP+ Sbjct 241 IAEALEAVDRFHKHVPGSSSATMCVGSLDFGSGEFSYCTAGHPPPLLVTADATARYVEPS 300 Query 300 GAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGF 359 GAGPLGSGTGFPVR+E L++GD+IL YTDGLIERPGRPL ASTAEFADLAA+I SG GGF Sbjct 301 GAGPLGSGTGFPVRTEFLDVGDSILLYTDGLIERPGRPLGASTAEFADLAANIVSGQGGF 360 Query 360 VLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRA 419 V+++ R +DRLC++TLELLLRSTGY+DDVTLLA QRR P PPL++TLDATI+AARTVR Sbjct 361 VIESSVRTVDRLCAETLELLLRSTGYSDDVTLLAAQRRTPPPPLNLTLDATIHAARTVRT 420 Query 420 QLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVI 479 +LR+WL+++GAD DI+DIVHAISEFVENAVEHGYAT+V G+VV A LAGDGN+ ASVI Sbjct 421 RLRQWLSDVGADADDISDIVHAISEFVENAVEHGYATEVPDGVVVEAMLAGDGNLHASVI 480 Query 480 DRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRR 539 DRG+WKDHR+G GRGRGLAMAEALVSEA + HG GTTA +THRLSRPA FV D++V R Sbjct 481 DRGRWKDHREGETGRGRGLAMAEALVSEAHVSHGPEGTTARVTHRLSRPANFVADSLVSR 540 Query 540 AAFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHL 598 A +EFVS V E GRIVV GDVDS TA+TLDRQIAVESRSG+AP+T+DLSAVTHL Sbjct 541 AGDHGVRSAEFVSTVTEPGRIVVSGDVDSNTASTLDRQIAVESRSGVAPLTVDLSAVTHL 600 Query 599 GSAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQ 652 GSAGV ALAAA +RA +QG++ VLVAPPGSPAHHVLSLVQ+PVV E++ A+ Sbjct 601 GSAGVSALAAARERALRQGSDYVLVAPPGSPAHHVLSLVQIPVVSGLAENVVAE 654 >gi|41408459|ref|NP_961295.1| hypothetical protein MAP2361 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396815|gb|AAS04678.1| RsbU [Mycobacterium avium subsp. paratuberculosis K-10] Length=655 Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/654 (77%), Positives = 568/654 (87%), Gaps = 2/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 M AE DWD+ VGAA+DVRR+F+++PA+LVGLEGPDHRFVAVNAAYR SP +D +G AR Sbjct 1 MVAEKDWDRIVGAADDVRRVFDNVPALLVGLEGPDHRFVAVNAAYRALSPPVDPIGLLAR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSG-VEERYFDFVVTPRRRADGS 119 EVYPELE QQI++M DRVYQTGEPQSG+EWR+Q D++G G +E +FDF+VTPRR DGS Sbjct 61 EVYPELESQQIFQMFDRVYQTGEPQSGTEWRVQADFEGVGKAQEHFFDFIVTPRRGDDGS 120 Query 120 IEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIA 179 IEGVQL DVT RVR R AAEAR+EELSERYRNVRDSATVMQQALLA SVPV PGAD+ Sbjct 121 IEGVQLAFVDVTDRVRNRMAAEARLEELSERYRNVRDSATVMQQALLAPSVPVTPGADVT 180 Query 180 AEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYT 239 AEYLVAA+DTAAGGDWFDA+ LGDRLVL+VGDVVGHGVEAAAVMSQLRTALRMQI AGY Sbjct 181 AEYLVAAQDTAAGGDWFDAIPLGDRLVLIVGDVVGHGVEAAAVMSQLRTALRMQILAGYP 240 Query 240 VVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPT 299 + EALEAVDRFHK VPGS SATMCVGSLDF SGEF YCTAGHPPPLLVTADA+ARYVEP+ Sbjct 241 IAEALEAVDRFHKHVPGSSSATMCVGSLDFGSGEFSYCTAGHPPPLLVTADATARYVEPS 300 Query 300 GAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGF 359 GAGPLGSGTGFPVR+E L++GD+IL YTDGLIERPGRPL ASTAEFADLAA+I SG GGF Sbjct 301 GAGPLGSGTGFPVRTEFLDVGDSILLYTDGLIERPGRPLGASTAEFADLAANIVSGQGGF 360 Query 360 VLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRA 419 V+++ R DRLC++TLELLLRSTGY+DDVTLLA QRR P PPL++TLDATI+AARTVR Sbjct 361 VIESSVRTADRLCAETLELLLRSTGYSDDVTLLAAQRRTPPPPLNLTLDATIHAARTVRT 420 Query 420 QLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVI 479 +LR+WL+++GAD DI+DIVHAISEFVENAVEHGYAT+V G+VV A LAGDGN+ ASVI Sbjct 421 RLRQWLSDVGADADDISDIVHAISEFVENAVEHGYATEVPDGVVVEAMLAGDGNLHASVI 480 Query 480 DRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRR 539 DRG+WKDHR+G GRGRGLAMAEALVSEA + HG GTTA +THRLSRPA FV D++V R Sbjct 481 DRGRWKDHREGETGRGRGLAMAEALVSEAHVSHGPEGTTARVTHRLSRPANFVADSLVSR 540 Query 540 AAFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHL 598 A +EFVS V E GRIVV GDVDS TA+TLDRQIAVESRSG+AP+T+DLSAVTHL Sbjct 541 AGDHGVRSAEFVSTVTEPGRIVVSGDVDSNTASTLDRQIAVESRSGVAPLTVDLSAVTHL 600 Query 599 GSAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQ 652 GSAGV ALAAA +RA +QG++ VLVAPPGSPAHHVLSLVQ+PVV E++ A+ Sbjct 601 GSAGVSALAAARERALRQGSDYVLVAPPGSPAHHVLSLVQIPVVSGLAENVVAE 654 >gi|254823324|ref|ZP_05228325.1| hypothetical protein MintA_25574 [Mycobacterium intracellulare ATCC 13950] Length=655 Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/654 (75%), Positives = 569/654 (88%), Gaps = 2/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 M AE DWD+TVGAAEDVRR+FE++P +LVGLEGP+HRFVAVNAAYR SP +D++G R Sbjct 1 MVAEKDWDRTVGAAEDVRRVFENVPMLLVGLEGPEHRFVAVNAAYRVLSPPIDSIGLLTR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSG-VEERYFDFVVTPRRRADGS 119 EVYPEL Q+I +M DRVYQTGEPQSG+EWR+Q D+DG+G +E +FDF+VT RR DG+ Sbjct 61 EVYPELVSQEIIQMFDRVYQTGEPQSGTEWRVQADFDGAGQAQEHFFDFIVTARRAEDGT 120 Query 120 IEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIA 179 IEGVQL DVT RV+ R AAEAR+EELSERYRNVRDSATVMQQALLA SVPV+PGAD+ Sbjct 121 IEGVQLAFTDVTDRVQTRMAAEARLEELSERYRNVRDSATVMQQALLAPSVPVIPGADVT 180 Query 180 AEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYT 239 A+YLVAAEDTAAGGDWFDA+ LGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQ+ AGY Sbjct 181 AQYLVAAEDTAAGGDWFDAIPLGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQVVAGYP 240 Query 240 VVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPT 299 + EALEAVDRF K VPGS +AT+CVG+LDF +GEF+YCTAGHPPPLLVT++A++RY+EP+ Sbjct 241 IAEALEAVDRFRKHVPGSNTATICVGALDFGTGEFRYCTAGHPPPLLVTSEATSRYLEPS 300 Query 300 GAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGF 359 GAGPLGSGTGFPVR+E L++GD+IL YTDGLIERPGRPL ASTAEFA+LAA+IA G GF Sbjct 301 GAGPLGSGTGFPVRTEFLDVGDSILLYTDGLIERPGRPLGASTAEFAELAANIAGGQRGF 360 Query 360 VLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRA 419 V+++ R IDR+CS+TLELLLRSTGY+DDVTLLA QRR P PLH+TLDAT++AAR VR Sbjct 361 VIESSMRAIDRICSETLELLLRSTGYSDDVTLLAAQRRTPPAPLHMTLDATLHAARAVRT 420 Query 420 QLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVI 479 +LR+WLAEIGA DI+D+VHAISEFVEN+VEHGYATDVS G+ V A L+GDG++ SVI Sbjct 421 RLRQWLAEIGATADDISDVVHAISEFVENSVEHGYATDVSDGVDVEAMLSGDGDLHISVI 480 Query 480 DRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRR 539 DRG+WKDHR+G GRGRGLAMAEALVSEA + HG GTTA +TH LSRPA FVTD++V R Sbjct 481 DRGRWKDHREGETGRGRGLAMAEALVSEAHVSHGPDGTTARVTHHLSRPADFVTDSLVSR 540 Query 540 AAFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHL 598 A Q+T++SEFVS V E GRIVV GDVDS TA+TLDRQIAVESRSG+AP+TIDLSAVTHL Sbjct 541 ATRQRTVNSEFVSAVTEPGRIVVSGDVDSNTASTLDRQIAVESRSGVAPLTIDLSAVTHL 600 Query 599 GSAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQ 652 GS+GV ALAAA +RA++QG+E VLVAPPGSPAHHVLSLVQ+PVV E++ A+ Sbjct 601 GSSGVSALAAARERAQRQGSEYVLVAPPGSPAHHVLSLVQIPVVSGLAENVVAE 654 >gi|289749920|ref|ZP_06509298.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289690507|gb|EFD57936.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=552 Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/467 (99%), Positives = 465/467 (99%), Gaps = 0/467 (0%) Query 187 EDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEA 246 DTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEA Sbjct 86 RDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEA 145 Query 247 VDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGS 306 VDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGS Sbjct 146 VDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGS 205 Query 307 GTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPAR 366 GTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPAR Sbjct 206 GTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPAR 265 Query 367 PIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLA 426 PIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLA Sbjct 266 PIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLA 325 Query 427 EIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKD 486 EIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVV AALAGDGNVRASVIDRGQWKD Sbjct 326 EIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVEAALAGDGNVRASVIDRGQWKD 385 Query 487 HRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRAAFQQTI 546 HRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRAAFQQTI Sbjct 386 HRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRAAFQQTI 445 Query 547 DSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGSAGVGAL 606 DSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGSAGVGAL Sbjct 446 DSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGSAGVGAL 505 Query 607 AAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 653 AAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE Sbjct 506 AAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQE 552 >gi|342857940|ref|ZP_08714596.1| regulator of sigma subunit, anti-anti-sigma factor RsbU [Mycobacterium colombiense CECT 3035] gi|342135273|gb|EGT88439.1| regulator of sigma subunit, anti-anti-sigma factor RsbU [Mycobacterium colombiense CECT 3035] Length=655 Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/654 (74%), Positives = 569/654 (88%), Gaps = 2/654 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 M AE DWD+TVGAA+DVRR+F+++P +LVGLEGPDHRF+AVNAAYR SP +D++G R Sbjct 1 MVAEKDWDRTVGAADDVRRVFDNVPTLLVGLEGPDHRFIAVNAAYRTLSPPIDSIGLFVR 60 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSG-VEERYFDFVVTPRRRADGS 119 ++YPELE Q+I +M DRVY+TGEPQSG+EWR+Q D++G G +E +FDF+VT RR DGS Sbjct 61 DIYPELESQEIIQMFDRVYETGEPQSGTEWRVQADFEGDGRAQEHFFDFIVTARRAEDGS 120 Query 120 IEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIA 179 IEGVQL DVTSRV+ R AAEAR+EE+SERYRNVRDSATVMQQALLA SVP+VPGAD+ Sbjct 121 IEGVQLAFVDVTSRVQTRMAAEARLEEMSERYRNVRDSATVMQQALLAPSVPIVPGADVT 180 Query 180 AEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYT 239 A+YLVAAEDTAAGGDWFDA+ LGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQ+ AGY Sbjct 181 AQYLVAAEDTAAGGDWFDAIPLGDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQVVAGYP 240 Query 240 VVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPT 299 + ALEAVDRF K VPGS +AT+CVGSLDF +GEFQYCTAGHPPPLLVTADA+ARY+EP+ Sbjct 241 IAVALEAVDRFRKHVPGSNTATICVGSLDFGTGEFQYCTAGHPPPLLVTADATARYLEPS 300 Query 300 GAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGF 359 G GPLGSGTGFPVR+E L++GD+IL YTDGLIERPGRPL ASTAEFA+LAA+I G GF Sbjct 301 GGGPLGSGTGFPVRTEFLDVGDSILLYTDGLIERPGRPLGASTAEFAELAANIVGGQRGF 360 Query 360 VLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRA 419 V+++ RPIDR+CS+TLELLLRSTGY+DDVTLLA QRR P PLH+TLDATI AR VR Sbjct 361 VIESSVRPIDRICSETLELLLRSTGYSDDVTLLAAQRRTPVAPLHLTLDATIRTARAVRT 420 Query 420 QLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVI 479 +LR+WL+EIGAD DI+D+VHA+SEFVENAVEHGYAT+VS G+VV A L+GDGN+ ASV Sbjct 421 RLRQWLSEIGADADDISDVVHAVSEFVENAVEHGYATEVSDGVVVEATLSGDGNLHASVT 480 Query 480 DRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRR 539 DRG+WKDHR+G GRGRGLAMAEALVS+A + H AGGTTA++TH+LSRPA FVTD++V R Sbjct 481 DRGRWKDHREGETGRGRGLAMAEALVSQAHVSHDAGGTTASVTHQLSRPANFVTDSVVGR 540 Query 540 AAFQQTIDSEFVSLV-ESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHL 598 A ++ + +EFVS V E GRIVV GDVDS TA+TLDRQIAVESRSG+AP+T+DL+AVTHL Sbjct 541 ATDRRAVSAEFVSEVSEPGRIVVSGDVDSNTASTLDRQIAVESRSGVAPLTVDLTAVTHL 600 Query 599 GSAGVGALAAACDRARKQGTECVLVAPPGSPAHHVLSLVQLPVVGADTEDIFAQ 652 GSAGV ALAAA +RAR+QG+E VLVAPPGSPAHHVLSLVQ+PVV E++ A+ Sbjct 601 GSAGVSALAAARERARRQGSEYVLVAPPGSPAHHVLSLVQIPVVSGLAENLVAE 654 >gi|311772038|pdb|3KE6|A Chain A, The Crystal Structure Of The Rsbu And Rsbw Domains Of Rv1364c From Mycobacterium Tuberculosis gi|311772039|pdb|3KE6|B Chain B, The Crystal Structure Of The Rsbu And Rsbw Domains Of Rv1364c From Mycobacterium Tuberculosis Length=399 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/371 (100%), Positives = 371/371 (100%), Gaps = 0/371 (0%) Query 169 SVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRT 228 SVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRT Sbjct 29 SVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGDRLVLVVGDVVGHGVEAAAVMSQLRT 88 Query 229 ALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVT 288 ALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVT Sbjct 89 ALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVT 148 Query 289 ADASARYVEPTGAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADL 348 ADASARYVEPTGAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADL Sbjct 149 ADASARYVEPTGAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADL 208 Query 349 AASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLD 408 AASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLD Sbjct 209 AASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLD 268 Query 409 ATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAAL 468 ATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAAL Sbjct 269 ATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAAL 328 Query 469 AGDGNVRASVIDRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRP 528 AGDGNVRASVIDRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRP Sbjct 329 AGDGNVRASVIDRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRP 388 Query 529 ARFVTDTMVRR 539 ARFVTDTMVRR Sbjct 389 ARFVTDTMVRR 399 >gi|258652298|ref|YP_003201454.1| PAS/PAC sensor protein [Nakamurella multipartita DSM 44233] gi|258555523|gb|ACV78465.1| putative PAS/PAC sensor protein [Nakamurella multipartita DSM 44233] Length=666 Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 238/638 (38%), Positives = 336/638 (53%), Gaps = 15/638 (2%) Query 11 VGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAREVYPELEGQQ 70 VG A + R+FE PAI V L+GP+H VA+NA R T+ +P PEL G+ Sbjct 18 VGDASVLARVFEDSPAIHVALQGPEHTIVAINAVTRRLLGDRPTLARPCAAAIPELIGRS 77 Query 71 IYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVE-----ERYFDFVVTPRRRADGSIEGVQL 125 + + LD VY +G+P + + R+ D G E E + F+++P R ADG++ GV + Sbjct 78 LLDRLDEVYASGQPITARDRRVHLD---GGAEDEIDLEWFVTFIISPWRYADGTMRGVIV 134 Query 126 IVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVA 185 D TS+++AR+ A E RYR D +Q+ LL +S+PV+P ++AA YL+A Sbjct 135 QAVDTTSQLQARRQATQSGSEFRRRYRAALDVIDELQRTLLPSSLPVLPQLELAARYLLA 194 Query 186 AEDTAAGGDWFDALALGD-RLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEAL 244 + AAGGDWFD L D RL +VVGDVVGHGV AA VMSQLR+ L + G + EA+ Sbjct 195 DVEHAAGGDWFDGFMLADHRLAVVVGDVVGHGVAAAGVMSQLRSVLSYLLDTGVELAEAV 254 Query 245 EAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPL 304 +DRF + PG +AT+CV ++ SG Y T GHP P++V AD AR++ +G PL Sbjct 255 TQLDRFASRTPGGFAATVCVVLVEPASGAMTYVTCGHPAPMVVDADGVARFLPLSGHRPL 314 Query 305 GSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAP 364 G+G ++ L IG+ ++ ++DGL+ERP R E+ A A + G +P Sbjct 315 GAGASAAPITDSLGIGEVLVLFSDGLVERPDRTWESGLALLATITGDAVLGR-DLPEGSP 373 Query 365 ARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRRA-PTPPLHITLDATINAARTVRAQLRE 423 +R+C+ +E++ R G+ DDVT++A+QRRA P P + A + +RA LR Sbjct 374 ESVPERVCAHAVEMMTRP-GHLDDVTMVAVQRRAVPVEPWYAEYPARADRLELIRADLRR 432 Query 424 WLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQ 483 WL E D + A+SE N +EH Y I + L G+ V D G Sbjct 433 WLRERMVSAEDETALTLAVSEAAANCIEHAYRDGDEGTIRIQVNLTTKGDALLVVADEGG 492 Query 484 WKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRAAFQ 543 W+D A RGRGLAM V + I GGT + RL RP + V Sbjct 493 WRDPITKAGTRGRGLAMVADAVDDFSIDTETGGTVVRMRRRLHRPVGMLAGDGVVEVGSA 552 Query 544 QTIDSEFVSLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGSAGV 603 + +E + + I V G VD + L +++ R G PVTIDL+AVTHL SAGV Sbjct 553 E-FRAEPSGPIGARVITVSGSVDLASVPVLRQEVLRAGRGGELPVTIDLTAVTHLSSAGV 611 Query 604 GAL--AAACDRARKQGTECVLVAPPGSPAHHVLSLVQL 639 L +A + VL+A GSPA +VL L L Sbjct 612 QMLHTLSATGQPGALRHPPVLIAASGSPAAYVLDLAGL 649 >gi|299689062|pdb|3KX0|X Chain X, Crystal Structure Of The Pas Domain Of Rv1364c Length=185 Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 159/162 (99%), Positives = 159/162 (99%), Gaps = 0/162 (0%) Query 2 AAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPARE 61 AAE DWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPARE Sbjct 24 AAEXDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPARE 83 Query 62 VYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIE 121 VYPELEGQQIYE LDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIE Sbjct 84 VYPELEGQQIYEXLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIE 143 Query 122 GVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQ 163 GVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATV QQ Sbjct 144 GVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVXQQ 185 >gi|307776403|pdb|3K3C|A Chain A, The N-Terminal Pas Domain Crystal Structure Of Rv1364c From Mycobacterium Tuberculosis At 1.62 gi|307776404|pdb|3K3C|B Chain B, The N-Terminal Pas Domain Crystal Structure Of Rv1364c From Mycobacterium Tuberculosis At 1.62 gi|307776405|pdb|3K3C|C Chain C, The N-Terminal Pas Domain Crystal Structure Of Rv1364c From Mycobacterium Tuberculosis At 1.62 gi|307776406|pdb|3K3C|D Chain D, The N-Terminal Pas Domain Crystal Structure Of Rv1364c From Mycobacterium Tuberculosis At 1.62 Length=158 Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 156/156 (100%), Positives = 156/156 (100%), Gaps = 0/156 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 3 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 62 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 63 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 122 Query 121 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRD 156 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRD Sbjct 123 EGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRD 158 >gi|307776407|pdb|3K3D|A Chain A, The N-Terminal Pas Domain Crystal Structure Of Rv1364c From Mycobacterium Tuberculosis At 2.3 Angstrom Length=149 Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 145/147 (99%), Positives = 145/147 (99%), Gaps = 0/147 (0%) Query 1 MAAEMDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 60 MAAE DWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR Sbjct 3 MAAEXDWDKTVGAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLLDTVGQPAR 62 Query 61 EVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 120 EVYPELEGQQIYE LDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI Sbjct 63 EVYPELEGQQIYEXLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 122 Query 121 EGVQLIVDDVTSRVRARQAAEARVEEL 147 EGVQLIVDDVTSRVRARQAAEARVEEL Sbjct 123 EGVQLIVDDVTSRVRARQAAEARVEEL 149 >gi|332670735|ref|YP_004453743.1| putative PAS/PAC sensor protein [Cellulomonas fimi ATCC 484] gi|332339773|gb|AEE46356.1| putative PAS/PAC sensor protein [Cellulomonas fimi ATCC 484] Length=631 Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 215/602 (36%), Positives = 299/602 (50%), Gaps = 31/602 (5%) Query 53 DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTP 112 D VG+ A E Q++ + +T P L+ G + + + + P Sbjct 47 DVVGRTAEETLTAPVAQRVVPRVLEALRTRRPMPAEHVLLEVGTSGDR-RDVWLRWSLDP 105 Query 113 RRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATVMQQALLAASVPV 172 ADG GV ++ DVT+ V R AAE R+ ERY RD +Q ALL ASVPV Sbjct 106 WYDADGRYRGVIVLAQDVTALVEERLAAERRLVGAQERYAVARDVVIALQGALLPASVPV 165 Query 173 VPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDVVGHGVEAAAVMSQLRTALR 231 +P D+AA YLVA + AAGGDWFDA D ++ VVGDVVGHGV A+A MSQLR + Sbjct 166 LPRVDLAATYLVAGREQAAGGDWFDAAVTPDGKVSCVVGDVVGHGVAASAAMSQLRAVMA 225 Query 232 MQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADA 291 ++ G V EALE++DR+ + + + T+CV LD +GE +Y T GHP PL+V Sbjct 226 SRLLDGAGVSEALESMDRYARVASDAFATTVCVALLDPETGELEYATRGHPAPLVV-GPG 284 Query 292 SARYVEPTGAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIERPGRPLEASTAEFADLAAS 351 AR + PTG GPLG V + + +A+L +TDGL+E G+PL+ AD A+ Sbjct 285 RARRLPPTGGGPLGVEDSSVVHRDHVGDDEALLLFTDGLVEVVGQPLDQRLQRLAD--AA 342 Query 352 IASGSGGFVLDAPARPI-DRLCSDTLELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDAT 410 + + G V R + +RLC +L G+ DDVT+LA RR P L T+ AT Sbjct 343 VQAVDGVVVGRYAGRTLAERLCLHVPWVL--DEGFVDDVTVLAASRRPAPPDLAFTVRAT 400 Query 411 INAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAG 470 TVR ++ W A +G DH + +V SE N VEH Y D G + Sbjct 401 ATQLATVRERVAAWAALVGLDHEERDAVVLGASEAAANCVEHAY-LDREPGEIRVEGRLR 459 Query 471 DGNVRASVIDRGQWKDHRDGARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLSRPAR 530 + +V D G W+ GRGRGLAM + S AR+ A T + L AR Sbjct 460 RTTLTLAVEDDGTWQPATPDTSGRGRGLAMVAS--SGARLAVDARETGTRVELELD--AR 515 Query 531 FVTDTMVRRAAFQQTIDS--------EFVSLVESGRIVVRGDVDSTTAA-TLDRQIAVES 581 RRA Q + + V++ G I V G +D+ AA LD Q+ S Sbjct 516 -------RRAPVQPPVTTPATSLSGGPLVTVAADGVIHVAGVLDTEDAARLLDAQVTATS 568 Query 582 RSGIAPVTIDLSAVTHLGSAGVGALAAACDRARKQGTECV-LVAPPGSPAHHVLSLVQLP 640 R G+ PV ++++ LGSA + A+ C R +G+ V +V GS + L++ P Sbjct 569 RGGVVPVIVEVAPTAFLGSAAIRAI-ERCVRGAGRGSGGVRVVVQAGSLSAQTLAVAGTP 627 Query 641 VV 642 VV Sbjct 628 VV 629 >gi|332669717|ref|YP_004452725.1| protein serine/threonine phosphatase [Cellulomonas fimi ATCC 484] gi|332338755|gb|AEE45338.1| protein serine/threonine phosphatase [Cellulomonas fimi ATCC 484] Length=509 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 178/489 (37%), Positives = 248/489 (51%), Gaps = 15/489 (3%) Query 155 RDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDVV 213 RD + ALL A+VP++ AD+AA YLV+ D GGDWFDA D RL L VGDVV Sbjct 22 RDVLVRLHGALLPATVPLLAHADVAATYLVSNRDQTVGGDWFDACVTVDGRLALAVGDVV 81 Query 214 GHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGE 273 G G++++ MS LR+ L + G +V E+L +DR + P + ++++CV LD +GE Sbjct 82 GTGIQSSVTMSDLRSVLGSHLQDGTSVAESLAVLDRIALRAPHAFASSVCVAVLDPRTGE 141 Query 274 FQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEVLNIGDAILFYTDGLIER 333 +Y T GHPPPL+VTA A + T G LG VL +G A++ TDGL++ Sbjct 142 LEYATRGHPPPLVVTA-TGATTLPATAGGTLGGSDPGTTAHAVLPLGAALVLCTDGLVDH 200 Query 334 PGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLA 393 PG ++AS + AA+ G A R R+ ++ L + G++DDVTLL Sbjct 201 PGASIDASWQALSRAAAAALGDDGDRHESAAVRLCRRVPAE-----LGADGFDDDVTLLV 255 Query 394 MQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAVEHG 453 RR PL + A + +R + W A +G D A + A+SE N+VEH Sbjct 256 AHRRPAPAPLDVRTTAQAASLGPLRGAIGRWGASVGLTPRDAALLELAVSETAANSVEHA 315 Query 454 YATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARGRGRGLAMAEALVSEARIMHG 513 Y + V A L V +V D G W++ RGRGLAMA + ++ G Sbjct 316 YRGVAPGPVSVHAELDDTATVTVTVTDAGTWQEPSSMPSDRGRGLAMARMGGVDVQVDTG 375 Query 514 AGGTTATLTHRLSRPARFVTDTMVRRAAFQQ--TIDSEFVSLVESGRIVVRGDVDSTTAA 571 A GT TL RL R D RA+ + +ID+ V +V G +V R + S ++ Sbjct 376 ASGTCVTL--RLPARRRVPLDVGPARASTRSDVSIDTAQVGVVRVGGVVDRPEAASRVSS 433 Query 572 TLDRQIAVESRSGIAPVTIDLSAVTHLGSAGVGALAAACDRARKQGTECVLVAPPGSPAH 631 ++RQ SR G+ PVT++L +T LGS GV AL D G LVA GS A Sbjct 434 EVNRQ----SRGGLLPVTVELGDLTFLGSIGVRALQTLTDAGAPGGAPVTLVAAAGSRAA 489 Query 632 HVLSLVQLP 640 L L LP Sbjct 490 GTLRLAGLP 498 >gi|119716155|ref|YP_923120.1| stage II sporulation E family protein [Nocardioides sp. JS614] gi|119536816|gb|ABL81433.1| Stage II sporulation E family protein [Nocardioides sp. JS614] Length=511 Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 195/513 (39%), Positives = 251/513 (49%), Gaps = 31/513 (6%) Query 145 EELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGDR 204 E + +R R V T MQ ALL V +P D+AA YL++ +D +AGGDWFD + LGD Sbjct 4 EGIRQRDRYV---VTAMQDALLPVGVVALPRVDVAARYLLSEDDRSAGGDWFDTVPLGDG 60 Query 205 LVLVVGDVVGHGVE-AAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMC 263 V +V V AA+ M QLR L + A VEALE RF +P ++ AT Sbjct 61 RVGLVVGDVVGQGVTAASTMGQLRAVLTAALLAREDPVEALEEASRFAAALPEARGATAV 120 Query 264 VGSLDFTSGE---FQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEVLNIG 320 V +D +GE +YCTAGHPPPL+V AD SA ++ TG GPLGSGT L G Sbjct 121 VALVDPAAGERGSLRYCTAGHPPPLVVRADGSAAFLPVTGGGPLGSGTPLQAAEAALGPG 180 Query 321 DAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLL 380 D +L YTDGL+ RP A+ + DL A+ A + C TLE L Sbjct 181 DLLLLYTDGLLVRPD---AAAASSLDDLLAAATDACREAAPAAAGAVAEAACELTLERLT 237 Query 381 RSTGYNDDVTLLAMQ-RRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIV 439 R TG DDVT+LA Q + T L + L A + R VR +L WLA++ D + Sbjct 238 RRTGVADDVTVLAAQLLPSRTEDLLLDLPALPDTVRVVRLELGGWLADLRLSSIDQLALQ 297 Query 440 HAISEFVENAVEHGY---ATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARGRGR 496 A+ E V NAVEH Y + + + V A G + V DRG+W+ G G R Sbjct 298 QAVGELVGNAVEHAYPPGSQALHTSVRVRATHTDAGCIEVDVSDRGRWRPRPPG--GTHR 355 Query 497 GLAMAEALVSEARIMHGAGGTTATLTHRLSRPARFVTDT-----MVRRAAFQQTIDSEFV 551 GLA+A V + GT + HR RPA +T T RAA +Q S V Sbjct 356 GLALASGFVDHLERVPADTGTHLRVRHRALRPAHLLTATPGGAGAETRAAREQPGLS--V 413 Query 552 SLVESGRIVVRGDVDSTTAATLDRQIAVESRSGIA----PVTIDLSAVTHLGSAGVGALA 607 SG + + G VD ++DR +A E R A PV +DLSAVT L S V L+ Sbjct 414 RRSASGDLALSGAVDPL---SVDR-LAAEVRRSTAGPDRPVVVDLSAVTLLCSGAVQVLS 469 Query 608 AACDRARKQGTECVLVAPPGSPAHHVLSLVQLP 640 A A VL P GS A VL L ++P Sbjct 470 DAVPGAGSAHAPVVLRTPAGSVAELVLELTRVP 502 >gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] Length=1711 Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 178/510 (35%), Positives = 246/510 (49%), Gaps = 29/510 (5%) Query 151 YRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVV 209 YR R A +Q +LL A +P + +AA YL AE T AGGDW+D + L D RL + V Sbjct 1213 YRAERGIAETLQLSLLPAQLPALERLALAAHYLPGAEGTQAGGDWYDVVELADHRLAIAV 1272 Query 210 GDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDF 269 GDVVG G AAAVM QLR+AL + G EALE +DRF ++PG+ ++T +D Sbjct 1273 GDVVGQGPAAAAVMGQLRSALSTAVLQGCGPAEALELLDRFAARLPGALASTAACLVVDG 1332 Query 270 TSGEFQYCTAGHPPPLLVTADASARYVEPTGAGP-LGSGTGFPVRSEVLNI--GDAILFY 326 T+G ++ AGHPP LLVT D A+ ++ G+G LG+ P + I G +L Y Sbjct 1333 TAGTVRWARAGHPPALLVTPD-GAQLLDGAGSGAVLGAPGRRPYTEGTVQITPGATLLLY 1391 Query 327 TDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYN 386 TDGL+ER G L+ D + + + P RL ++ L Sbjct 1392 TDGLVERRGEVLD-------DGLERVRAAAARHAAADPVGLTGRLLAEVLA----DADQP 1440 Query 387 DDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFV 446 DDV L+A R P PL L A + VR + W A G D+ A+ E + Sbjct 1441 DDVALIA-ARLLPA-PLSARLPADPRSLSAVRRAVAAWTAAAGLPDDTAEDLQLALGEAL 1498 Query 447 ENAVEHGYATDVSKG-IVVAAALAGDGNVRASVIDRGQWKDHRDGARGRGRGLAMAEALV 505 NAVEH YA +G A DG++RA V D G W+ RGRGL + AL Sbjct 1499 ANAVEHAYAAAADEGECSYRVAREADGSLRAEVRDSGLWRPPPADRGYRGRGLELISALA 1558 Query 506 SEARIMHGAGGTTATLTHRLSRPARFVTDTMVRRAAFQQTIDSEFVSLV--ESG--RIVV 561 ++ ++H T+ R++ + +R +D V V E G R+ V Sbjct 1559 TDVEVVHVPEVAGTTVRFRMAPAVPGAPELRPQRGTAGPPLDGGAVLTVHDEPGGPRLEV 1618 Query 562 RGDVDSTTAATLDRQIAVESRSGIAP---VTIDLSAVTHLGSAGVGALAAACDRARKQGT 618 G+VD TA + RQ+ +AP T+DL +L SAGVG + A RAR+ G Sbjct 1619 HGEVDLATAGRVRRQLLTRLEQ-LAPGSVATLDLGPTGYLASAGVGLVLEAVARARRAGV 1677 Query 619 ECVLVAPPGSPAHHVLSL--VQLPVVGADT 646 E + PG+P +L+L V P V A T Sbjct 1678 ELRVQTRPGTPPARILALAGVGEPAVEAPT 1707 >gi|331694426|ref|YP_004330665.1| putative PAS/PAC sensor protein [Pseudonocardia dioxanivorans CB1190] gi|326949115|gb|AEA22812.1| putative PAS/PAC sensor protein [Pseudonocardia dioxanivorans CB1190] Length=1401 Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 158/491 (33%), Positives = 223/491 (46%), Gaps = 26/491 (5%) Query 158 ATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDVVGHG 216 A +Q++LL +P +A Y E T AGGDWFD L LGD R LVVGDVVG G Sbjct 909 AVTLQRSLLPQRLPETERLAMATRYQPGTEGTEAGGDWFDVLDLGDQRFALVVGDVVGRG 968 Query 217 VEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGEFQY 276 AAAVM QLR+AL + G +ALE +D F ++V G+ ++T+ ++D +G+ +Y Sbjct 969 PAAAAVMGQLRSALAANLVNGQQPADALEQLDLFARRVEGAMASTVVCATIDCRTGDLRY 1028 Query 277 CTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEV---LNIGDAILFYTDGLIER 333 AGHPPPL+ D + G PLG G P E L+ G+ IL +DGL ER Sbjct 1029 ACAGHPPPLVSGPDGVRLLADGRGT-PLGV-FGRPPFVEADDRLDPGETILLCSDGLFER 1086 Query 334 PGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLA 393 ++ D +A+ GG V P D L L+ + + DD T L Sbjct 1087 RNEVID-------DGMDRLAAVFGGLVGTRPEPSADAL----LDRMSEGSAVPDD-TALV 1134 Query 394 MQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAVEHG 453 + R P PL + L A +R + W A+ G D + D+ A+ E NAVEH Sbjct 1135 LARLLPA-PLRLELAAEPKELAGLRRVVARWCAQAGVDEAAFTDLQLALGEAATNAVEHA 1193 Query 454 YATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARGRGRGLAMAEALVSEARIMHG 513 Y + V L D V V D G+W+ RGRGLA+ L + + G Sbjct 1194 YPPGAGGIVRVDLDLTSDATVTVRVADEGKWRPPPADPGYRGRGLALIRELARDVDVAAG 1253 Query 514 AGGTTATLTHRLSRPARFVTDTMVRRAAFQQTIDSEF-VSLVESG----RIVVRGDVDST 568 GT T P RRA + + V + SG + V GD+D Sbjct 1254 PAGTVVTF-RMPPEPVEVQVGAGARRAWSPRVQRAPVPVPRIRSGAGPVHVEVSGDLDLA 1312 Query 569 TAATLDRQIAVESRSGIAPVTIDLSAVTHLGSAGVGALAAACDRARKQGTECVLVAPPGS 628 + ++ +E S P+ ++L+A ++ SAGV L +R G +V+P S Sbjct 1313 GVQEVRSEL-LERVSAGTPLVLELAADCYVSSAGVALLTELTERGGAAGAGVTVVSPADS 1371 Query 629 PAHHVLSLVQL 639 A +L L L Sbjct 1372 AARRILRLAGL 1382 >gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] Length=1389 Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 136/389 (35%), Positives = 190/389 (49%), Gaps = 28/389 (7%) Query 143 RVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALG 202 RV E+ ++ R++A +Q A+L P A A Y A GGDW+D + + Sbjct 1021 RVHEIDQQ----REAAVALQHAILG---PATLPAGFAVRYQPAMSPLQVGGDWYDTVPMD 1073 Query 203 D-RLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSAT 261 + R+ +VVGD VGHG++AAAVM QLR+A R + + AL +DRF +P ++ T Sbjct 1074 EGRIGIVVGDCVGHGLDAAAVMGQLRSACRALLLEHSSPARALAGLDRFAALLPAAECTT 1133 Query 262 MCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLG--SGTGFPVRSEVLNI 319 + +LD +GE Y +AGHPPP+LV AD + +E PLG + S V+ Sbjct 1134 VFCATLDPATGELVYSSAGHPPPILVRADGTTTTLEGGRGIPLGLRADRQRGEDSHVIAA 1193 Query 320 GDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELL 379 +L YTDGL+ER R L+ A V D RP++ L S + L Sbjct 1194 RSTLLLYTDGLVERRRRSLDEGIGRAA-----------AAVHDGRDRPVEDLASQLMTTL 1242 Query 380 LRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIV 439 GY DDV LL + P P + A + TVR +R WLA I D++ Sbjct 1243 APVGGYEDDVALLLYR---PPGPFEVDFVAVASELATVRHAMRAWLARCDLGAQQINDVL 1299 Query 440 HAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWK--DHRDGARG-RGR 496 A+ E NAVEHG+ + I + AA D + SVID G+WK D ARG RGR Sbjct 1300 IAVGEACNNAVEHGHREHPAGLIRLRAAALAD-RLWVSVIDSGRWKPRDLEATARGNRGR 1358 Query 497 GLAMAEALVSEARIMHGAGGTTATLTHRL 525 G+A+ L+ I GTT + R+ Sbjct 1359 GIALMRGLMHHVTIDPTDAGTTVEMYTRI 1387 >gi|120404755|ref|YP_954584.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] gi|119957573|gb|ABM14578.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1] Length=828 Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 132/382 (35%), Positives = 187/382 (49%), Gaps = 24/382 (6%) Query 149 ERYRNVRDSATVMQQALLA-ASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLV 206 R R++A +Q A+L A +P A Y A+ GGDW+D + L D R+ Sbjct 465 HRVDQQRETALALQHAILGPADLP----HGFAVRYQAASRPLQVGGDWYDVVDLDDGRIA 520 Query 207 LVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGS 266 ++VGD VGHG+ AA VM Q+R+A R + + AL +DRF ++PG++ AT Sbjct 521 MIVGDCVGHGLPAATVMGQVRSACRALLFDNPSPAAALAGMDRFAARLPGAQCATAVCAV 580 Query 267 LDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEVLNI--GDAIL 324 LD +GE Y +AGHPPP+L+ AD SAR +E LG G+ L+I G ++ Sbjct 581 LDPATGELVYSSAGHPPPILMHADGSARLLEGAHTIALGLRVGWSRPEGRLSIPAGATLM 640 Query 325 FYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTG 384 YTDGL+ER LE + A+L + ++ L + L S G Sbjct 641 LYTDGLVERRRTLLEDGISRAAELLEGHRTSD-----------LEDLADQIMSGLAPSVG 689 Query 385 YNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISE 444 Y DDV LL + A PL + A N RA LR WL + + + D++ A E Sbjct 690 YQDDVALLLYRHPA---PLQLNFPADANHLAPARAALRSWLTSARVEPARVMDVLVAAGE 746 Query 445 FVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARG-RGRGLAMAEA 503 + NA+EHG+ G V A A VR +V D G WK + G RGRG+A+ A Sbjct 747 ALANAIEHGH-RHTPDGTVSLRATALVDRVRLTVADTGSWKVPQPGRDSRRGRGIALMRA 805 Query 504 LVSEARIMHGAGGTTATLTHRL 525 L+ + I G GT+ L R+ Sbjct 806 LMHDVEIDIGRSGTSVHLDTRI 827 >gi|120402928|ref|YP_952757.1| multi-sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] gi|119955746|gb|ABM12751.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium vanbaalenii PYR-1] Length=1385 Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 134/388 (35%), Positives = 193/388 (50%), Gaps = 29/388 (7%) Query 143 RVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALG 202 RV+++ ++ R++A +Q A+L P + G A Y A GGDW+D + L Sbjct 1021 RVQQIDQQ----RETALALQHAILG---PALSGG-FAVRYQPATRPLQVGGDWYDVVDLD 1072 Query 203 D-RLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSAT 261 D R+ L+VGD VGHG+ AAA+M QLR+A R + + AL +DRF ++PG++ T Sbjct 1073 DGRIALIVGDCVGHGLAAAAIMGQLRSACRALLLEHPSPAAALSGLDRFAARLPGARCTT 1132 Query 262 MCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRS---EVLN 318 LD +GE Y AGHPPP+L+ AD S R +E A PLG P R+ E + Sbjct 1133 AFCAVLDPETGEVVYSCAGHPPPILIGADRSTRLLEEARATPLGLKNP-PHRTEARETMA 1191 Query 319 IGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLEL 378 +L YTDGL+ER ++ A A G V D A +D L + + Sbjct 1192 PRATLLLYTDGLVERRRESIDDGIARAA-----------GVVEDNRATALDELANAVMAG 1240 Query 379 LLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADI 438 L + GY+DDV LL ++ A PL + A + R LR WL G D+ Sbjct 1241 LAPADGYHDDVALLLYRQPA---PLDLEFAADVAELAVGREALRGWLDRAGVGAEQSLDV 1297 Query 439 VHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRD-GARGRGRG 497 + A E + NA+EHG+ + +G V A+A V +V+D G WK A RGRG Sbjct 1298 LIATGEALANAIEHGH-REQPRGPVRLRAIALPDRVHVTVVDSGTWKPPATVPALHRGRG 1356 Query 498 LAMAEALVSEARIMHGAGGTTATLTHRL 525 +A+ AL+ + I GTT + R+ Sbjct 1357 IALMRALMHDVTIDSQTTGTTVHMNARI 1384 >gi|118463715|ref|YP_881319.1| stage II sporulation protein E (SpoIIE) [Mycobacterium avium 104] gi|118165002|gb|ABK65899.1| stage II sporulation protein E (SpoIIE) [Mycobacterium avium 104] Length=835 Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 125/377 (34%), Positives = 182/377 (49%), Gaps = 24/377 (6%) Query 155 RDSATVMQQALLA-ASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDV 212 R++A +Q A+L A +P A Y A GGDWFD + L D R+ LVVGD Sbjct 478 RETALALQHAILGPADLP----NGFAVRYQAATRPLQVGGDWFDIVDLEDGRVALVVGDC 533 Query 213 VGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSG 272 VGHG+ +A VM Q+R+A R + + AL +DRF ++PG++ T L +G Sbjct 534 VGHGLASATVMGQVRSACRALLIENPSPAAALAGLDRFAARLPGAQCTTAVCAVLTPDTG 593 Query 273 EFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEVLNIG--DAILFYTDGL 330 E Y +AGHPPP++V D S + ++ LG +P + I +L YTDGL Sbjct 594 ELVYSSAGHPPPIVVHGDGSTQILDEGHTIALGIRRDWPRPEARVTIPARATLLLYTDGL 653 Query 331 IERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVT 390 +ER PL+ A +A DA +D L + + + S GY DDV Sbjct 654 VERRRSPLDRGIYRVATVAQ-----------DARGSSLDELATRIMSAVAPSGGYQDDVV 702 Query 391 LLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAV 450 LL + A PL + A +N R LR WL + D +++ A E V NA+ Sbjct 703 LLLYRHPA---PLELNFPADVNQLAPARTALRNWLRRVRLDPEQTLNVLVAAGEAVANAI 759 Query 451 EHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWK-DHRDGARGRGRGLAMAEALVSEAR 509 EHG+ I + A GD VR ++ D G WK RGRG+ + ++L+++ Sbjct 760 EHGHRHSPQGTIRLGATALGD-QVRLTITDTGTWKVPQATSYPHRGRGIPLMKSLMNDVD 818 Query 510 IMHGAGGTTATLTHRLS 526 I GGTT L+ R++ Sbjct 819 IRSDTGGTTVQLSARIT 835 >gi|41408176|ref|NP_961012.1| hypothetical protein MAP2078c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396531|gb|AAS04395.1| hypothetical protein MAP_2078c [Mycobacterium avium subsp. paratuberculosis K-10] Length=891 Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 125/377 (34%), Positives = 182/377 (49%), Gaps = 24/377 (6%) Query 155 RDSATVMQQALLA-ASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDV 212 R++A +Q A+L A +P A Y A GGDWFD + L D R+ LVVGD Sbjct 534 RETALALQHAILGPADLP----NGFAVRYQAATRPLQVGGDWFDIVDLEDGRVALVVGDC 589 Query 213 VGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSG 272 VGHG+ +A VM Q+R+A R + + AL +DRF ++PG++ T L +G Sbjct 590 VGHGLASATVMGQVRSACRALLLENPSPAAALAGLDRFAARLPGAQCTTAVCAVLTPDTG 649 Query 273 EFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEVLNIG--DAILFYTDGL 330 E Y +AGHPPP++V D S + ++ LG +P + I +L YTDGL Sbjct 650 ELVYSSAGHPPPIVVHGDGSTQILDEGHTIALGIRRDWPRPEARVTIPARATLLLYTDGL 709 Query 331 IERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVT 390 +ER PL+ A +A DA +D L + + + S GY DDV Sbjct 710 VERRRSPLDRGIYRVATVAQ-----------DARGSSLDELATRIMSAVAPSGGYQDDVV 758 Query 391 LLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAV 450 LL + A PL + A +N R LR WL + D +++ A E V NA+ Sbjct 759 LLLYRHPA---PLELNFPADVNQLAPTRTALRNWLRRVRLDPEQTLNVLVAAGEAVANAI 815 Query 451 EHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWK-DHRDGARGRGRGLAMAEALVSEAR 509 EHG+ I + A GD VR ++ D G WK RGRG+ + ++L+++ Sbjct 816 EHGHRHSPQGTIRLGATALGD-QVRLTITDTGTWKVPQATSYPHRGRGIPLMKSLMNDVD 874 Query 510 IMHGAGGTTATLTHRLS 526 I GGTT L+ R++ Sbjct 875 IRSDTGGTTVQLSARIT 891 >gi|336461731|gb|EGO40592.1| serine phosphatase RsbU, regulator of sigma subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=855 Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 125/377 (34%), Positives = 182/377 (49%), Gaps = 24/377 (6%) Query 155 RDSATVMQQALLA-ASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDV 212 R++A +Q A+L A +P A Y A GGDWFD + L D R+ LVVGD Sbjct 498 RETALALQHAILGPADLP----NGFAVRYQAATRPLQVGGDWFDIVDLEDGRVALVVGDC 553 Query 213 VGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSG 272 VGHG+ +A VM Q+R+A R + + AL +DRF ++PG++ T L +G Sbjct 554 VGHGLASATVMGQVRSACRALLLENPSPAAALAGLDRFAARLPGAQCTTAVCAVLTPDTG 613 Query 273 EFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEVLNIG--DAILFYTDGL 330 E Y +AGHPPP++V D S + ++ LG +P + I +L YTDGL Sbjct 614 ELVYSSAGHPPPIVVHGDGSTQILDEGHTIALGIRRDWPRPEARVTIPARATLLLYTDGL 673 Query 331 IERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVT 390 +ER PL+ A +A DA +D L + + + S GY DDV Sbjct 674 VERRRSPLDRGIYRVATVAQ-----------DARGSSLDELATRIMSAVAPSGGYQDDVV 722 Query 391 LLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAV 450 LL + A PL + A +N R LR WL + D +++ A E V NA+ Sbjct 723 LLLYRHPA---PLELNFPADVNQLAPTRTALRNWLRRVRLDPEQTLNVLVAAGEAVANAI 779 Query 451 EHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWK-DHRDGARGRGRGLAMAEALVSEAR 509 EHG+ I + A GD VR ++ D G WK RGRG+ + ++L+++ Sbjct 780 EHGHRHSPQGTIRLGATALGD-QVRLTITDTGTWKVPQATSYPHRGRGIPLMKSLMNDVD 838 Query 510 IMHGAGGTTATLTHRLS 526 I GGTT L+ R++ Sbjct 839 IRSDTGGTTVQLSARIT 855 >gi|315445373|ref|YP_004078252.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1] gi|315263676|gb|ADU00418.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1] Length=1386 Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 134/389 (35%), Positives = 194/389 (50%), Gaps = 29/389 (7%) Query 143 RVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALG 202 RV ++ ++ R++A +Q A+L S+ + A Y A GGDW+D + L Sbjct 1022 RVHQIDQQ----RETALALQHAILGPSL----SSAFAVRYQPATRPLQVGGDWYDVVDLE 1073 Query 203 D-RLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSAT 261 D R+ L+VGD VGHG+ AA VM QLR+A R + + AL A+DRF ++PG++ T Sbjct 1074 DGRIGLIVGDCVGHGLAAATVMGQLRSACRALLLEHPSPAAALSALDRFAARLPGARCTT 1133 Query 262 MCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSE---VLN 318 LD GE Y AGHPPP++VTAD + +E A PLG P R+E + Sbjct 1134 AFCAVLDPRIGEVVYSCAGHPPPIMVTADRTTELLEGARATPLGLKNP-PHRTEARVTMP 1192 Query 319 IGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLEL 378 +L YTDGL+ER ++ A D+ S A +D+L + + Sbjct 1193 ARATLLLYTDGLVERRRESIDDGIARATDVVQS-----------NRATDLDQLANVIMAR 1241 Query 379 LLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADI 438 L + GY+DDV LL R P PL + A + R LR WL G D+ Sbjct 1242 LAPADGYHDDVALLLY--RQPE-PLDLDFPADVAELAGSRTVLRGWLDSAGVPQDQALDV 1298 Query 439 VHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRD-GARGRGRG 497 + A+ E + NA+EHG+ D G V A+A V+ ++ID G WK D A RGRG Sbjct 1299 LIAVGEALANAIEHGHRDD-PGGRVRLRAVALPDRVQLTIIDTGSWKAPDDVPALHRGRG 1357 Query 498 LAMAEALVSEARIMHGAGGTTATLTHRLS 526 +A+ +AL+ + I GTT + R++ Sbjct 1358 IALMKALMQDVTIDSQTTGTTVHMNTRIA 1386 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 35/107 (33%), Positives = 50/107 (47%), Gaps = 10/107 (9%) Query 33 GPDHRFVAVNAAYRGFS-----PLLDTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 87 GPD F N AYR + P +G+PA EV+ E+ I +DRV TG Sbjct 62 GPDLTFFC-NDAYRNVTLGRKYPW--ALGRPASEVWAEI-WDDIGPRIDRVLSTGVATWD 117 Query 88 SEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRV 134 + L + G EE Y F +P R DG++ G+ +V + T +V Sbjct 118 TSLLLFLERSGY-TEESYHTFSYSPLRDDDGTVVGMLCVVSEDTLQV 163 >gi|145225099|ref|YP_001135777.1| putative GAF sensor protein [Mycobacterium gilvum PYR-GCK] gi|145217585|gb|ABP46989.1| putative GAF sensor protein [Mycobacterium gilvum PYR-GCK] Length=851 Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 130/377 (35%), Positives = 183/377 (49%), Gaps = 24/377 (6%) Query 155 RDSATVMQQALLA-ASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDV 212 R++A +Q A+L A +P PG Y A+ GGDW+D + L D R+ L+VGD Sbjct 494 RETALALQHAILGPAHLP--PG--FTVRYQAASRPLQVGGDWYDVVDLDDGRIALIVGDC 549 Query 213 VGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSG 272 VGHG+ AA VM Q+R+A R + + AL +DRF ++PG++ T V LD SG Sbjct 550 VGHGLAAATVMGQVRSACRALLLENPSPGAALSGMDRFAARLPGAQCTTAVVMVLDPASG 609 Query 273 EFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGF--PVRSEVLNIGDAILFYTDGL 330 E Y +AGHPPPL+V AD + LG + P L +G ++ YTDGL Sbjct 610 EIAYSSAGHPPPLVVHADGEVETFDDAHTIALGLRLNWVRPETRRTLEVGSTLVLYTDGL 669 Query 331 IERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVT 390 +ER PLE + D+ V++ A P+D L + + L S GY DDV Sbjct 670 VERRRIPLEEGISRATDV-----------VVEHRAAPLDDLANAIMSELAPSVGYQDDVA 718 Query 391 LLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAV 450 LL + A PL +T A + R LR WL+ + + +++ A E V NA+ Sbjct 719 LLLYRHPA---PLELTFPAHADHLAPTRTALRRWLSGAKVEQGRVMEVLVAAGEAVANAI 775 Query 451 EHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARG-RGRGLAMAEALVSEAR 509 EHG+ G V A A V + D G WK RGRG+ + L+ + Sbjct 776 EHGHRHG-PPGTVRLRATALVDLVELIITDSGSWKPPSAIPDTYRGRGIGIMRGLMQDVT 834 Query 510 IMHGAGGTTATLTHRLS 526 I H + GTT L R+S Sbjct 835 IAHDSDGTTIHLYARIS 851 >gi|315445466|ref|YP_004078345.1| serine phosphatase RsbU, regulator of sigma subunit [Mycobacterium sp. Spyr1] gi|315263769|gb|ADU00511.1| serine phosphatase RsbU, regulator of sigma subunit [Mycobacterium sp. Spyr1] Length=851 Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 130/377 (35%), Positives = 183/377 (49%), Gaps = 24/377 (6%) Query 155 RDSATVMQQALLA-ASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDV 212 R++A +Q A+L A +P PG Y A+ GGDW+D + L D R+ L+VGD Sbjct 494 RETALALQHAILGPAHLP--PG--FTVRYQAASRPLQVGGDWYDVVDLDDGRIALIVGDC 549 Query 213 VGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSG 272 VGHG+ AA VM Q+R+A R + + AL +DRF ++PG++ T V LD SG Sbjct 550 VGHGLAAATVMGQVRSACRALLLENPSPGAALSGMDRFAARLPGAQCTTAVVMVLDPASG 609 Query 273 EFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGF--PVRSEVLNIGDAILFYTDGL 330 E Y +AGHPPPL+V AD + LG + P L +G ++ YTDGL Sbjct 610 EIAYSSAGHPPPLVVHADGEVETFDDAHTIALGLRLNWARPETRRTLEVGSTLVLYTDGL 669 Query 331 IERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVT 390 +ER PLE + D+ V++ A P+D L + + L S GY DDV Sbjct 670 VERRRIPLEEGISRATDV-----------VVEHRAAPLDDLANAIMSELAPSVGYQDDVA 718 Query 391 LLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAV 450 LL + A PL +T A + R LR WL+ + + +++ A E V NA+ Sbjct 719 LLLYRHPA---PLELTFPAHADHLAPTRTALRRWLSGAKVEQGRVMEVLVAAGEAVANAI 775 Query 451 EHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARG-RGRGLAMAEALVSEAR 509 EHG+ G V A A V + D G WK RGRG+ + L+ + Sbjct 776 EHGHRHG-PPGTVRLRATALVDLVELIITDSGSWKPPSAIPDTYRGRGIGIMRGLMQDVT 834 Query 510 IMHGAGGTTATLTHRLS 526 I H + GTT L R+S Sbjct 835 IAHDSDGTTIHLYARIS 851 >gi|257057451|ref|YP_003135283.1| fused histidine kinase with GAF domain/SpoIIE-like protein [Saccharomonospora viridis DSM 43017] gi|256587323|gb|ACU98456.1| fused histidine kinase with GAF domain/SpoIIE-like protein [Saccharomonospora viridis DSM 43017] Length=537 Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 124/380 (33%), Positives = 180/380 (48%), Gaps = 28/380 (7%) Query 155 RDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALAL-GDRLVLVVGDVV 213 R++A +Q++LL +P + G D+A+ Y V E GDW+D L R+ +V+GDVV Sbjct 173 RNAAATLQRSLLPVQLPSISGLDLASRY-VPGERLGTSGDWYDVFTLPSGRVCMVIGDVV 231 Query 214 GHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGE 273 G G+ AA +M +LRT LR E L +DR+ + AT+ G + + Sbjct 232 GRGLSAAMIMGRLRTILRASSLDREDPSEILTKLDRYARHFESDIMATIACGVWEPSLER 291 Query 274 FQYCTAGHPPPLLVTADASARYVE--PTGAGPLGSGTGFPVRSEV---LNIGDAILFYTD 328 AGH P+ +R V P A P+G + R V + G A+LFYTD Sbjct 292 VHLSLAGHLTPVFAPVGEESRLVTEVPVDA-PIGVSSTTQKRHTVTVEVPYGAALLFYTD 350 Query 329 GLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDD 388 GL+ER RPL+ L ++ +G P + LC++ + L+ +DD Sbjct 351 GLVERRDRPLDDG---LRQLCETVRAG-----------PAETLCAEVMSKLVGVNSPSDD 396 Query 389 VTLLAMQRRAPTPP--LHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFV 446 + +LA R+AP P L +DAT + VR+QLR WL +GA D AD++ A+ E V Sbjct 397 IAILAAHRQAPETPSELRFEVDATPESLAEVRSQLRRWLPNVGASEDDTADLLIAVGEAV 456 Query 447 ENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARGRGRGLAMAEALVS 506 N++EH Y G V D V +V D G W+ R RGRG+ + L Sbjct 457 ANSIEHAYGP--HGGKVALGLEVHDAEVEITVSDTGTWRSPR--GTHRGRGMQLMRQLCD 512 Query 507 EARIMHGAGGTTATLTHRLS 526 E + H GT L R S Sbjct 513 ELTVEHDETGTHVRLRKRFS 532 >gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC 12478] Length=1405 Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 134/387 (35%), Positives = 192/387 (50%), Gaps = 26/387 (6%) Query 143 RVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALG 202 RV +L ++ R++A +Q A+L + +PG A Y A GGDW+D + L Sbjct 1040 RVYQLDQQ----RETALALQHAILGPAH--LPGG-FAVRYQPATRPLQVGGDWYDVVDLD 1092 Query 203 D-RLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSAT 261 D RL LVVGD VGHG+ AA VM QLR+A R + + AL +DRF ++PG++ T Sbjct 1093 DGRLALVVGDCVGHGLAAATVMGQLRSACRALLLEHLSPGVALTGLDRFAARLPGAQCTT 1152 Query 262 MCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEVLNIG- 320 L +GE Y +AGHPPP+LV AD +AR ++ G LG + + L I Sbjct 1153 AFCAVLSPDTGELVYSSAGHPPPILVHADGTARILDEAGTIALGVRSDWARPEARLTIPA 1212 Query 321 -DAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELL 379 +L YTDGL+ER PL+ AE +L V D ++ L + + L Sbjct 1213 RATLLLYTDGLVERRRHPLDQGIAEAIEL-----------VRDGGTVTLEDLATRIMSGL 1261 Query 380 LRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIV 439 GY DDV LL ++ PL I L A + R+ LR WLA D++ Sbjct 1262 NPGGGYPDDVALLLYRQPG---PLEIDLPARASQLAATRSALRGWLARAMVRPGQAQDVL 1318 Query 440 HAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARG-RGRGL 498 A+ E + NA+EHG+ + +G + A+A ++ ++ D G WK R RGRGL Sbjct 1319 IAVGEALANAIEHGHRRN-PEGTIGLRAIALADRLQLTITDTGSWKPPRPPRDSHRGRGL 1377 Query 499 AMAEALVSEARIMHGAGGTTATLTHRL 525 A+ L+ + I G GTT L R+ Sbjct 1378 ALMRTLMDDVTIQAGTLGTTVHLHARI 1404 Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust. Identities = 36/110 (33%), Positives = 50/110 (46%), Gaps = 16/110 (14%) Query 33 GPDHRFVAVNAAYRGFSPLLDTVGQ--------PAREVYPELEGQQIYEMLDRVYQTGEP 84 GP+ F N+AYR DT+GQ PAREV+ E+ I + RV TG+ Sbjct 69 GPELTFF-CNSAYR-----RDTLGQKYPWALGRPAREVWAEI-WDDIGPRIQRVLSTGQA 121 Query 85 QSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRV 134 + L + G EE Y F +P R G + G+ +V + T RV Sbjct 122 TWDAALLLFLERSGY-REETYHTFSYSPLRDDFGHVVGMLCVVSEDTDRV 170 >gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] Length=1382 Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 133/390 (35%), Positives = 195/390 (50%), Gaps = 30/390 (7%) Query 143 RVEELSERYRNVRDSATVMQQALLA-ASVPVVPGADIAAEYLVAAEDTAAGGDWFDALAL 201 RV ++ ++ R++A +Q+A+L A +P A A Y AA GGDW+D + L Sbjct 1016 RVHQIDQQ----RETALALQRAILGPAQLP----AGFAVRYSPAAMPLKVGGDWYDTVEL 1067 Query 202 GD-RLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSA 260 D R+ +VVGD VGHG++AA VM QLR+A R + + L A+DRF +PG+ A Sbjct 1068 PDGRIGIVVGDCVGHGLQAATVMGQLRSACRALLLQDPSPARTLVALDRFAALLPGASCA 1127 Query 261 TMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLG--SGTGFPVRSEVLN 318 T+ G LD +G +Y +AGHPP ++V AD + ++ + PL G P + Sbjct 1128 TVFCGVLDPATGLMRYSSAGHPPAIVVRADGTPELLQHGRSRPLAVRPGQERPEAEATVP 1187 Query 319 IGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLEL 378 ++ YTDGL+ER +P+ A A D +I G P++ L ++ ++ Sbjct 1188 PRATLMLYTDGLVERRRQPITAGIARATD---AIQQGHHA--------PVEVLATEIMDR 1236 Query 379 LLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADI 438 L GY+DDV LL + PL + A VR LR WL G + +I Sbjct 1237 LTPDGGYHDDVALLLYRHPG---PLELEFPAESTRLAEVRTALRGWLDRCGLAPAHAYNI 1293 Query 439 VHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARG--RGR 496 + A E NA+EHG+ D G + A A G +R SV D G W+D RD RGR Sbjct 1294 LVAAGEACANAIEHGH-RDNPGGRIRLRAAATAGALRLSVTDSGHWRD-RDQPPDPHRGR 1351 Query 497 GLAMAEALVSEARIMHGAGGTTATLTHRLS 526 GL + AL+ + GA GTT + R++ Sbjct 1352 GLVLMRALMDNISVTPGATGTTVDMQARIT 1381 Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust. Identities = 38/110 (35%), Positives = 50/110 (46%), Gaps = 16/110 (14%) Query 33 GPDHRFVAVNAAYRGFSPLLDTVGQ--------PAREVYPELEGQQIYEMLDRVYQTGEP 84 GP F NAAYR DT+G+ PA EV+ E+ I +D V +TGE Sbjct 64 GPQLSFF-CNAAYR-----RDTLGRKYPWALGLPANEVWAEI-WDDIGPRVDTVLRTGEA 116 Query 85 QSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRV 134 L + G EE Y F +P R DGS+ G+ +V + T RV Sbjct 117 TWDEGLLLFLERAGY-REETYHTFSYSPLRADDGSLVGMLCVVSEDTERV 165 >gi|145225002|ref|YP_001135680.1| multi-sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] gi|145217488|gb|ABP46892.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK] Length=1361 Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 134/389 (35%), Positives = 194/389 (50%), Gaps = 29/389 (7%) Query 143 RVEELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALG 202 RV ++ ++ R++A +Q A+L S+ + A Y A GGDW+D + L Sbjct 997 RVHQIDQQ----RETALALQHAILGPSL----SSAFAVRYQPATRPLQVGGDWYDVVDLE 1048 Query 203 D-RLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSAT 261 D R+ L+VGD VGHG+ AA VM QLR+A R + + AL A+DRF ++PG++ T Sbjct 1049 DGRIGLIVGDCVGHGLAAATVMGQLRSACRALLLEHPSPAAALSALDRFAARLPGARCTT 1108 Query 262 MCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSE---VLN 318 LD GE Y AGHPPP++VTAD + +E A PLG P R+E + Sbjct 1109 AFCAVLDPRIGEVVYSCAGHPPPIMVTADRTTELLEGARATPLGLKNP-PHRTEARVTMP 1167 Query 319 IGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLEL 378 +L YTDGL+ER ++ A D+ G D +D+L + + Sbjct 1168 ARATLLLYTDGLVERRRESIDDGIARATDVV------QGNRATD-----LDQLANVIMAR 1216 Query 379 LLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADI 438 L + GY+DDV LL R P PL + A + R LR WL G D+ Sbjct 1217 LAPADGYHDDVALLLY--RQPE-PLDLDFPADVAELAGSRTVLRGWLDSAGVPQDQALDV 1273 Query 439 VHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRD-GARGRGRG 497 + A+ E + NA+EHG+ D G V A+A V+ ++ID G WK D A RGRG Sbjct 1274 LIAVGEALANAIEHGHRDD-PGGRVRLRAVALPDRVQLTIIDTGSWKAPDDVPALHRGRG 1332 Query 498 LAMAEALVSEARIMHGAGGTTATLTHRLS 526 +A+ +AL+ + I GTT + R++ Sbjct 1333 IALMKALMQDVTIDSQTTGTTVHMNTRIA 1361 Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust. Identities = 34/107 (32%), Positives = 50/107 (47%), Gaps = 10/107 (9%) Query 33 GPDHRFVAVNAAYRGFS-----PLLDTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 87 GPD F N AYR + P +G+PA EV+ E+ I ++RV TG Sbjct 37 GPDLTFFC-NDAYRNVTLGRKYPW--ALGRPASEVWAEI-WDDIGPRIERVLSTGVATWD 92 Query 88 SEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRV 134 + L + G EE Y F +P R DG++ G+ +V + T +V Sbjct 93 TSLLLFLERSGY-TEESYHTFSYSPLRDDDGAVVGMLCVVSEDTLQV 138 >gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] Length=1381 Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 133/390 (35%), Positives = 195/390 (50%), Gaps = 30/390 (7%) Query 143 RVEELSERYRNVRDSATVMQQALLA-ASVPVVPGADIAAEYLVAAEDTAAGGDWFDALAL 201 RV ++ ++ R++A +Q+A+L A +P A A Y AA GGDW+D + L Sbjct 1015 RVHQIDQQ----RETALALQRAILGPAQLP----AGFAVRYSPAAMPLKVGGDWYDTVEL 1066 Query 202 GD-RLVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSA 260 D R+ +VVGD VGHG++AA VM QLR+A R + + L A+DRF +PG+ A Sbjct 1067 PDGRIGIVVGDCVGHGLQAATVMGQLRSACRALLLQDPSPARTLVALDRFAALLPGASCA 1126 Query 261 TMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLG--SGTGFPVRSEVLN 318 T+ G LD +G +Y +AGHPP ++V AD + ++ + PL G P + Sbjct 1127 TVFCGVLDPATGLMRYSSAGHPPAIVVRADGTPELLQHGRSRPLAVRPGQERPEAEATVP 1186 Query 319 IGDAILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLEL 378 ++ YTDGL+ER +P+ A A D +I G P++ L ++ ++ Sbjct 1187 PRATLMLYTDGLVERRRQPITAGIARATD---AIQQGHHA--------PVEVLATEIMDR 1235 Query 379 LLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADI 438 L GY+DDV LL + PL + A VR LR WL G + +I Sbjct 1236 LTPDGGYHDDVALLLYRHPG---PLELEFPAESTRLAEVRTALRGWLDRCGLAPAHAYNI 1292 Query 439 VHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARG--RGR 496 + A E NA+EHG+ D G + A A G +R SV D G W+D RD RGR Sbjct 1293 LVAAGEACANAIEHGH-RDNPGGRIRLRAAATAGALRLSVADSGHWRD-RDQPPDPHRGR 1350 Query 497 GLAMAEALVSEARIMHGAGGTTATLTHRLS 526 GL + AL+ + GA GTT + R++ Sbjct 1351 GLVLMRALMDNISVTPGATGTTVDMQARIT 1380 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 38/110 (35%), Positives = 50/110 (46%), Gaps = 16/110 (14%) Query 33 GPDHRFVAVNAAYRGFSPLLDTVGQ--------PAREVYPELEGQQIYEMLDRVYQTGEP 84 GP F NAAYR DT+G+ PA EV+ E+ I +D V +TGE Sbjct 64 GPQLSFF-CNAAYR-----RDTLGRKYPWALGLPANEVWAEI-WDDIGPRVDTVLRTGEA 116 Query 85 QSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRV 134 L + G EE Y F +P R DGS+ G+ +V + T RV Sbjct 117 TWDEGLLLFLERAGY-REETYHTFSYSPLRADDGSLVGMLCVVSEDTERV 165 >gi|254774822|ref|ZP_05216338.1| hypothetical protein MaviaA2_09145 [Mycobacterium avium subsp. avium ATCC 25291] Length=855 Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 124/377 (33%), Positives = 181/377 (49%), Gaps = 24/377 (6%) Query 155 RDSATVMQQALLA-ASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDV 212 R++A +Q A+L A +P A Y A GGDWFD + L D R+ LVVGD Sbjct 498 RETALALQHAILGPADLP----NGFAVRYQAATRPLQVGGDWFDIVDLEDGRVALVVGDC 553 Query 213 VGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSG 272 VGHG+ +A VM Q+R+A R + + AL +DRF ++PG++ T L +G Sbjct 554 VGHGLASATVMGQVRSACRALLLENPSPAAALAGLDRFAARLPGAQCTTAVCAVLTPDTG 613 Query 273 EFQYCTAGHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEVLNIG--DAILFYTDGL 330 E Y +AGHPPP++V D S + ++ LG +P + I +L YTDGL Sbjct 614 ELVYSSAGHPPPIVVHGDGSTQILDEGHTIALGIRRDWPRPEARVTIPARATLLLYTDGL 673 Query 331 IERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVT 390 +ER PL+ A +A DA +D L + + + GY DDV Sbjct 674 VERRRSPLDRGIYRVATVAQ-----------DARGSSLDELATRIMSAVAPRGGYQDDVV 722 Query 391 LLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAV 450 LL + A PL + A +N R LR WL + D +++ A E V NA+ Sbjct 723 LLLYRHPA---PLELNFPADVNQLAPTRTALRNWLRRVRLDPEQTLNVLVAAGEAVANAI 779 Query 451 EHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWK-DHRDGARGRGRGLAMAEALVSEAR 509 EHG+ I + A GD VR ++ D G WK RGRG+ + ++L+++ Sbjct 780 EHGHRHSPQGTIRLGATALGD-QVRLTITDTGTWKVPQATSYPHRGRGIPLMKSLMNDVD 838 Query 510 IMHGAGGTTATLTHRLS 526 I GGTT L+ R++ Sbjct 839 IRSDTGGTTVHLSARIT 855 >gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] Length=1227 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 139/391 (36%), Positives = 198/391 (51%), Gaps = 35/391 (8%) Query 146 ELSERYRNVRDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGDR- 204 E ++ Y AT +Q +LL ++P +PGA +A+ YL + D GGDW+D +A D Sbjct 854 ENAQLYEAEHHIATTLQHSLLPRTLPQLPGAVVASRYLPGSADVEVGGDWYDVMATADDD 913 Query 205 LVLVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRF-HKQVPGSKSATMC 263 LVLV+GDVVG GV AAA M QLR ALR + GY EAL ++R H GS + +C Sbjct 914 LVLVIGDVVGKGVRAAAAMGQLRNALRAYVLEGYDPGEALTRLNRLVHSAGSGSFATVVC 973 Query 264 VGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAGPLGS--GTGFPVRSEVLNIGD 321 +G +G +Y +AGHP PLL+ D A + P+G+ G +P L G+ Sbjct 974 LG-FSPRTGRIRYASAGHPSPLLIRGDDVAFLHDRALGPPIGAIPGAVYPAAEGELAPGN 1032 Query 322 AILFYTDGLIERPGRPLEASTAEFADLAASIASGSGGFVLDAPARP------IDRLCSDT 375 +L YTDGLIE D +A I +G G DA AR +D + + Sbjct 1033 RLLLYTDGLIE--------------DRSAGIDAGLGQLRADATARAGHVADLVDAVMARV 1078 Query 376 LELLLRSTGYNDDVTLLAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDI 435 E RS +DDV +LA++ A + L A +R +L ++L +D+ Sbjct 1079 AE---RSR--HDDVAVLALE-AAELNRFALRLPADPTRLSVLRKRLEDFLVAHQVGETDL 1132 Query 436 ADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARGRG 495 D+ A+SE NA+EH V I V +A D V A++ D G+W++ G+ RG Sbjct 1133 FDLTVAVSEAAANAIEHP-VDPVDPTIEVEVTIA-DRTVTATIRDSGRWRES-SGSTFRG 1189 Query 496 RGLAMAEALVSEARIMHGAGGTTATLTHRLS 526 RGLA+ +AL E + A GT TL RL+ Sbjct 1190 RGLALIQAL-GEMNVTRSANGTELTLRRRLA 1219 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 33/95 (35%), Positives = 47/95 (50%), Gaps = 6/95 (6%) Query 55 VGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRR 114 +GQPAR + E + +LD V +TG P G D G +E+ YFD P R Sbjct 102 IGQPARLHWAE-TWDVLGPLLDGVRRTGVPYRGENHPFVLDRHGF-LEDVYFDVSYDPIR 159 Query 115 RADGSIEGVQLIVDDVTSRVRARQAAEARVEELSE 149 ADG++ G+ V++ T RV E R+ L+E Sbjct 160 SADGTVGGLFCFVNETTGRV----LGERRLRALAE 190 >gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] Length=1389 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 125/376 (34%), Positives = 186/376 (50%), Gaps = 22/376 (5%) Query 155 RDSATVMQQALLAASVPVVPGADIAAEYLVAAEDTAAGGDWFDALALGD-RLVLVVGDVV 213 R++A +Q+A+L P A Y A GGDW+D + L D R+ +VVGD V Sbjct 1032 RETAIALQRAILG---PARLPEGFAVRYEPATRPLEVGGDWYDTVTLPDGRIGIVVGDCV 1088 Query 214 GHGVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPGSKSATMCVGSLDFTSGE 273 G G+EAA+VM QLR+A R + + L A+D+F V G+ T+ G L+ SGE Sbjct 1089 GRGLEAASVMGQLRSACRALLLQDPSPARTLTALDQFAAGVAGAICTTVFCGVLEPGSGE 1148 Query 274 FQYCTAGHPPPLLVTADASARYVEPTGAGPLG--SGTGFPVRSEVLNIGDAILFYTDGLI 331 Y +AGHPP +LV D S+R +E A PL G P + L +L YTDGL+ Sbjct 1149 LTYSSAGHPPGILVHPDGSSRLLEEGRALPLAVRPGRARPEATCSLPARATLLLYTDGLV 1208 Query 332 ERPGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVTL 391 ER RPL A + +G V + P++ L + + L + GY+DDV L Sbjct 1209 ERRRRPLSAGMEQ-----------AGEAVKEGREMPVEDLATAVMSRLAPAGGYDDDVAL 1257 Query 392 LAMQRRAPTPPLHITLDATINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAVE 451 L + A PL + A + VR LR WL + + + +++ A E NA+E Sbjct 1258 LLYRHPA---PLEMIFPAESSQLAPVRRALRGWLDQCDLPPTTVQNVLVAAGEACANAIE 1314 Query 452 HGYATDVSKGIVVAAALAGDGNVRASVIDRGQWK-DHRDGARGRGRGLAMAEALVSEARI 510 HG+ + + + A D +R +V D G+W+ R RGRG+++ AL+ E + Sbjct 1315 HGHRHTPGEDVRLRAEALVD-TLRVTVADSGRWRVPQRGRNTHRGRGISLMHALMQEVTV 1373 Query 511 MHGAGGTTATLTHRLS 526 G GTT + R++ Sbjct 1374 APGPSGTTVDMQMRIA 1389 Lambda K H 0.318 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1519148922720 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40