BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1365c

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608505|ref|NP_215881.1|  anti-anti-sigma factor RSFA (anti-s...   261    2e-68
gi|31792561|ref|NP_855054.1|  hypothetical protein Mb1400c [Mycob...   260    4e-68
gi|289753447|ref|ZP_06512825.1|  anti-anti-sigma factor rsfA [Myc...   260    5e-68
gi|289569379|ref|ZP_06449606.1|  anti-anti-sigma factor rsfA [Myc...   234    4e-60
gi|254819005|ref|ZP_05224006.1|  hypothetical protein MintA_03716...   144    6e-33
gi|41408840|ref|NP_961676.1|  hypothetical protein MAP2742 [Mycob...   140    7e-32
gi|118462259|ref|YP_882700.1|  anti-anti-sigma factor [Mycobacter...   137    4e-31
gi|342858531|ref|ZP_08715186.1|  hypothetical protein MCOL_06636 ...   134    3e-30
gi|240172519|ref|ZP_04751178.1|  hypothetical protein MkanA1_2460...   133    7e-30
gi|296170941|ref|ZP_06852471.1|  SpoIIAA family protein [Mycobact...   133    8e-30
gi|326904251|gb|EGE51184.1|  hypothetical protein TBPG_02149 [Myc...   132    2e-29
gi|15609775|ref|NP_217154.1|  hypothetical protein Rv2638 [Mycoba...   132    2e-29
gi|254551692|ref|ZP_05142139.1|  hypothetical protein Mtube_14749...   126    1e-27
gi|240172581|ref|ZP_04751240.1|  anti-anti-sigma factor [Mycobact...   120    5e-26
gi|15841375|ref|NP_336412.1|  anti-anti-sigma factor [Mycobacteri...   120    6e-26
gi|15609041|ref|NP_216420.1|  hypothetical protein Rv1904 [Mycoba...   120    6e-26
gi|31793097|ref|NP_855590.1|  hypothetical protein Mb1939 [Mycoba...   118    2e-25
gi|289758010|ref|ZP_06517388.1|  anti-anti-sigma factor [Mycobact...   118    3e-25
gi|183982075|ref|YP_001850366.1|  hypothetical protein MMAR_2061 ...   117    6e-25
gi|118618620|ref|YP_906952.1|  hypothetical protein MUL_3282 [Myc...   115    2e-24
gi|323719568|gb|EGB28692.1|  hypothetical protein TMMG_01164 [Myc...   113    1e-23
gi|339294839|gb|AEJ46950.1|  hypothetical protein CCDC5079_1760 [...   107    5e-22
gi|183982806|ref|YP_001851097.1|  hypothetical protein MMAR_2800 ...   100    6e-20
gi|118618334|ref|YP_906666.1|  hypothetical protein MUL_2925 [Myc...   100    6e-20
gi|333991578|ref|YP_004524192.1|  hypothetical protein JDM601_293...  99.0    2e-19
gi|289751265|ref|ZP_06510643.1|  conserved hypothetical protein [...  77.4    7e-13
gi|257055169|ref|YP_003133001.1|  anti-anti-sigma factor [Sacchar...  60.5    8e-08
gi|302555832|ref|ZP_07308174.1|  anti-sigma F factor antagonist [...  57.8    5e-07
gi|256379365|ref|YP_003103025.1|  anti-sigma-factor antagonist [A...  57.0    8e-07
gi|41406478|ref|NP_959314.1|  hypothetical protein MAP0380 [Mycob...  55.8    2e-06
gi|336460845|gb|EGO39730.1|  anti-anti-sigma factor [Mycobacteriu...  55.5    3e-06
gi|118462796|ref|YP_879719.1|  anti-anti-sigma factor [Mycobacter...  54.7    5e-06
gi|254820821|ref|ZP_05225822.1|  hypothetical protein MintA_12883...  53.9    8e-06
gi|226305069|ref|YP_002765027.1|  anti-anti-sigma factor [Rhodoco...  53.1    1e-05
gi|256377807|ref|YP_003101467.1|  anti-sigma-factor antagonist [A...  53.1    1e-05
gi|284990618|ref|YP_003409172.1|  anti-sigma-factor antagonist [G...  53.1    1e-05
gi|183985150|ref|YP_001853441.1|  anti-anti-sigma regulatory fact...  52.4    2e-05
gi|342861968|ref|ZP_08718612.1|  hypothetical protein MCOL_23875 ...  52.4    2e-05
gi|296166749|ref|ZP_06849173.1|  anti-anti-sigma factor [Mycobact...  52.0    3e-05
gi|290955149|ref|YP_003486331.1|  anti-sigma-factor antagonist [S...  51.6    4e-05
gi|318041274|ref|ZP_07973230.1|  anti-anti-sigma regulatory facto...  50.4    9e-05
gi|240172555|ref|ZP_04751214.1|  anti-anti-sigma regulatory facto...  50.4    9e-05
gi|256376432|ref|YP_003100092.1|  anti-sigma-factor antagonist [A...  50.1    1e-04
gi|229490190|ref|ZP_04384037.1|  anti-sigma factor antagonist [Rh...  49.3    2e-04
gi|54024402|ref|YP_118644.1|  putative anti-anti-sigma factor [No...  49.3    2e-04
gi|302337831|ref|YP_003803037.1|  anti-sigma-factor antagonist [S...  48.9    2e-04
gi|108804526|ref|YP_644463.1|  anti-sigma-factor antagonist [Rubr...  48.9    2e-04
gi|302526682|ref|ZP_07279024.1|  predicted protein [Streptomyces ...  48.1    4e-04
gi|256379408|ref|YP_003103068.1|  anti-sigma-factor antagonist [A...  48.1    4e-04
gi|311894138|dbj|BAJ26546.1|  putative antagonist protein [Kitasa...  48.1    4e-04


>gi|15608505|ref|NP_215881.1| anti-anti-sigma factor RSFA (anti-sigma factor antagonist) (regulator 
of sigma F A) [Mycobacterium tuberculosis H37Rv]
 gi|15840823|ref|NP_335860.1| anti-anti-sigma factor [Mycobacterium tuberculosis CDC1551]
 gi|148661155|ref|YP_001282678.1| anti-anti-sigma factor RsfA [Mycobacterium tuberculosis H37Ra]
 66 more sequence titles
 Length=128

 Score =  261 bits (668),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)

Query  1    MNPTQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEP  60
            MNPTQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEP
Sbjct  1    MNPTQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEP  60

Query  61   LVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPT  120
            LVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPT
Sbjct  61   LVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPT  120

Query  121  TESALSAT  128
            TESALSAT
Sbjct  121  TESALSAT  128


>gi|31792561|ref|NP_855054.1| hypothetical protein Mb1400c [Mycobacterium bovis AF2122/97]
 gi|121637296|ref|YP_977519.1| hypothetical protein BCG_1427c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224989770|ref|YP_002644457.1| hypothetical protein JTY_1401 [Mycobacterium bovis BCG str. Tokyo 
172]
 8 more sequence titles
 Length=128

 Score =  260 bits (665),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 127/128 (99%), Positives = 128/128 (100%), Gaps = 0/128 (0%)

Query  1    MNPTQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEP  60
            MNPTQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEP
Sbjct  1    MNPTQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEP  60

Query  61   LVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPT  120
            LVVNLNGLDFMGCCAVAVLAH+AERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPT
Sbjct  61   LVVNLNGLDFMGCCAVAVLAHKAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPT  120

Query  121  TESALSAT  128
            TESALSAT
Sbjct  121  TESALSAT  128


>gi|289753447|ref|ZP_06512825.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis EAS054]
 gi|289694034|gb|EFD61463.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis EAS054]
Length=128

 Score =  260 bits (664),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 127/128 (99%), Positives = 127/128 (99%), Gaps = 0/128 (0%)

Query  1    MNPTQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEP  60
            MNPTQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEP
Sbjct  1    MNPTQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEP  60

Query  61   LVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPT  120
            LVVNLNGLDFMGCC VAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPT
Sbjct  61   LVVNLNGLDFMGCCTVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPT  120

Query  121  TESALSAT  128
            TESALSAT
Sbjct  121  TESALSAT  128


>gi|289569379|ref|ZP_06449606.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis T17]
 gi|289543133|gb|EFD46781.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis T17]
Length=129

 Score =  234 bits (596),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 123/129 (96%), Positives = 124/129 (97%), Gaps = 1/129 (0%)

Query  1    MNPTQAGSFTTP-VSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPE  59
            MNPTQAGSFTTP  +   KATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPE
Sbjct  1    MNPTQAGSFTTPGEATRSKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPE  60

Query  60   PLVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHP  119
            PLVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHP
Sbjct  61   PLVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHP  120

Query  120  TTESALSAT  128
            TTESALSAT
Sbjct  121  TTESALSAT  129


>gi|254819005|ref|ZP_05224006.1| hypothetical protein MintA_03716 [Mycobacterium intracellulare 
ATCC 13950]
Length=145

 Score =  144 bits (362),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 69/113 (62%), Positives = 88/113 (78%), Gaps = 0/113 (0%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            + L+AT      AV+I+A GEIDA NEHTW+ LV++AA   TAP P VV++ GL+FMGCC
Sbjct  29   STLRATADRCGPAVLIYAGGEIDACNEHTWRHLVSEAAGVVTAPGPFVVDVTGLEFMGCC  88

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            A AVLA EA+RC++RG+D+RLVS +  VARII ACG G VLP++PT +SALSA
Sbjct  89   AFAVLADEAKRCQKRGIDLRLVSCEPIVARIIDACGLGGVLPIYPTVDSALSA  141


>gi|41408840|ref|NP_961676.1| hypothetical protein MAP2742 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254775968|ref|ZP_05217484.1| hypothetical protein MaviaA2_15040 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41397199|gb|AAS05059.1| hypothetical protein MAP_2742 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336458883|gb|EGO37840.1| anti-anti-sigma factor [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=145

 Score =  140 bits (352),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 65/114 (58%), Positives = 85/114 (75%), Gaps = 0/114 (0%)

Query  14   SNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGC  73
            ++ L+AT     SAV+I+A GEIDA NE TW+ LV++AA   T P P VV++ GL+FMGC
Sbjct  28   NSTLRATTARSGSAVLIYAGGEIDACNEDTWRHLVSEAAGVVTTPGPFVVDVTGLEFMGC  87

Query  74   CAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            CA AVL  EA+RCR+RG+D+RLVS +  V RII ACG  D+LP++PT +SALS 
Sbjct  88   CAFAVLTDEAKRCRQRGIDLRLVSCEPIVGRIIDACGLSDILPIYPTVDSALSG  141


>gi|118462259|ref|YP_882700.1| anti-anti-sigma factor [Mycobacterium avium 104]
 gi|118163546|gb|ABK64443.1| anti-anti-sigma factor [Mycobacterium avium 104]
Length=140

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 64/114 (57%), Positives = 84/114 (74%), Gaps = 0/114 (0%)

Query  14   SNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGC  73
            ++ L+AT     SAV+I+A GEIDA NE TW+ LV++AA     P P VV++ GL+FMGC
Sbjct  23   NSTLRATTARSGSAVLIYAGGEIDACNEDTWRHLVSEAAGVVATPGPFVVDVTGLEFMGC  82

Query  74   CAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            CA AVL  EA+RCR+RG+D+RLVS +  V RII ACG  D+LP++PT +SALS 
Sbjct  83   CAFAVLTDEAKRCRQRGIDLRLVSCEPIVGRIIDACGLSDILPIYPTVDSALSG  136


>gi|342858531|ref|ZP_08715186.1| hypothetical protein MCOL_06636 [Mycobacterium colombiense CECT 
3035]
 gi|342134235|gb|EGT87415.1| hypothetical protein MCOL_06636 [Mycobacterium colombiense CECT 
3035]
Length=145

 Score =  134 bits (338),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 64/114 (57%), Positives = 84/114 (74%), Gaps = 0/114 (0%)

Query  14   SNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGC  73
            ++ L+AT     ++V+I+A GE+DA NE TW  LV +AA+  TAP   VV++ GLDFMGC
Sbjct  28   NSTLRATADRSGASVVIYAGGEVDAYNEDTWGHLVREAASGVTAPGFFVVDVTGLDFMGC  87

Query  74   CAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            CA AVLA EA+ CR R +D+RLVSRD  V RI+ ACG G +LP++PT +SALSA
Sbjct  88   CAFAVLAEEAKGCRERDIDLRLVSRDPIVERIVDACGLGRLLPIYPTVDSALSA  141


>gi|240172519|ref|ZP_04751178.1| hypothetical protein MkanA1_24605 [Mycobacterium kansasii ATCC 
12478]
Length=142

 Score =  133 bits (335),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 61/111 (55%), Positives = 81/111 (73%), Gaps = 0/111 (0%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            + L+AT   + +AV+IHA GE+DA NEHTW+ L+T+ A +       VV++ GLDFMGCC
Sbjct  28   STLRATTDRNGAAVLIHAGGEVDACNEHTWRQLITETATSVPGSGLFVVDVTGLDFMGCC  87

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESAL  125
            A  VLA EA+RCRRRG ++RLV+    VARI+ ACG+ D+LPV+PT  SAL
Sbjct  88   AYTVLAEEADRCRRRGAELRLVTPQSTVARIVAACGFSDLLPVYPTVASAL  138


>gi|296170941|ref|ZP_06852471.1| SpoIIAA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894437|gb|EFG74182.1| SpoIIAA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=137

 Score =  133 bits (335),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 59/114 (52%), Positives = 85/114 (75%), Gaps = 0/114 (0%)

Query  14   SNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGC  73
            ++ L+AT      AV+I+A GE+DA NEHTW+ L+ + A    AP PLV+++ GL+FM C
Sbjct  20   TSTLRATADRSGPAVLIYAGGEVDACNEHTWRQLLGEVAGVAIAPGPLVIDVTGLEFMAC  79

Query  74   CAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            CA AVLA EA+RC+ RG+++RLVSR+  VARI+ ACG   +LP++PT +SAL++
Sbjct  80   CAFAVLADEAKRCKERGIELRLVSREPIVARIVDACGLSGLLPIYPTADSALAS  133


>gi|326904251|gb|EGE51184.1| hypothetical protein TBPG_02149 [Mycobacterium tuberculosis W-148]
Length=148

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 64/112 (58%), Positives = 81/112 (73%), Gaps = 0/112 (0%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            + L+AT     +A++IHA GEID  NEH W+ LVT+AAA  TAP PL+V++ GLDFMGCC
Sbjct  28   STLRATTDGSGAALLIHAGGEIDGRNEHLWRQLVTEAAAGVTAPGPLIVDVTGLDFMGCC  87

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
            A A LA EA+RCR RG+D+RLVS    VARI  A G   VLP++PT ++AL 
Sbjct  88   AFAALADEAQRCRCRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPTVDTALG  139


>gi|15609775|ref|NP_217154.1| hypothetical protein Rv2638 [Mycobacterium tuberculosis H37Rv]
 gi|15842179|ref|NP_337216.1| SpoIIAA family protein [Mycobacterium tuberculosis CDC1551]
 gi|31793824|ref|NP_856317.1| hypothetical protein Mb2671 [Mycobacterium bovis AF2122/97]
 74 more sequence titles
 Length=148

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 64/112 (58%), Positives = 81/112 (73%), Gaps = 0/112 (0%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            + L+AT     +A++IHA GEID  NEH W+ LVT+AAA  TAP PL+V++ GLDFMGCC
Sbjct  28   STLRATTDGSGAALLIHAGGEIDGRNEHLWRQLVTEAAAGVTAPGPLIVDVTGLDFMGCC  87

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
            A A LA EA+RCR RG+D+RLVS    VARI  A G   VLP++PT ++AL 
Sbjct  88   AFAALADEAQRCRCRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPTVDTALG  139


>gi|254551692|ref|ZP_05142139.1| hypothetical protein Mtube_14749 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|339295512|gb|AEJ47623.1| hypothetical protein CCDC5079_2433 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299130|gb|AEJ51240.1| hypothetical protein CCDC5180_2403 [Mycobacterium tuberculosis 
CCDC5180]
Length=108

 Score =  126 bits (316),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 60/99 (61%), Positives = 74/99 (75%), Gaps = 0/99 (0%)

Query  28   VIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHEAERCR  87
            ++IHA GEID  NEH W+ LVT+AAA  TAP PL+V++ GLDFMGCCA A LA EA+RCR
Sbjct  1    MLIHAGGEIDGRNEHLWRQLVTEAAAGVTAPGPLIVDVTGLDFMGCCAFAALADEAQRCR  60

Query  88   RRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
             RG+D+RLVS    VARI  A G   VLP++PT ++AL 
Sbjct  61   CRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPTVDTALG  99


>gi|240172581|ref|ZP_04751240.1| anti-anti-sigma factor [Mycobacterium kansasii ATCC 12478]
Length=140

 Score =  120 bits (302),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 57/112 (51%), Positives = 79/112 (71%), Gaps = 0/112 (0%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            + L+A  +   SAV++H  G+IDA+NE  WQ LVT++AA   AP P V+++  L+FMG C
Sbjct  26   SGLRAVTESTGSAVVVHVGGDIDASNEAVWQRLVTRSAAIAVAPGPFVIDVRDLEFMGSC  85

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
            A AVLA E+ RCRRRGV++RLVS    VAR I ACG   +LP++ + E+AL+
Sbjct  86   AYAVLAQESVRCRRRGVNLRLVSNQPIVARTIAACGLRRLLPMYSSVENALA  137


>gi|15841375|ref|NP_336412.1| anti-anti-sigma factor [Mycobacterium tuberculosis CDC1551]
 gi|254232080|ref|ZP_04925407.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|308231977|ref|ZP_07414465.2| hypothetical protein TMAG_02084 [Mycobacterium tuberculosis SUMu001]
 25 more sequence titles
 Length=144

 Score =  120 bits (301),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 60/123 (49%), Positives = 84/123 (69%), Gaps = 0/123 (0%)

Query  4    TQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVV  63
            T+  S  + + + L+A  +   SAV++H  G+IDA+NE  WQ LV+K+AA   AP P V+
Sbjct  16   TRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVI  75

Query  64   NLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTES  123
            ++  LDFMG CA AVLA E+ RCRRRGV++RLVS    VAR I ACG   ++P++ T E+
Sbjct  76   DIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVET  135

Query  124  ALS  126
            AL+
Sbjct  136  ALA  138


>gi|15609041|ref|NP_216420.1| hypothetical protein Rv1904 [Mycobacterium tuberculosis H37Rv]
 gi|148661712|ref|YP_001283235.1| hypothetical protein MRA_1915 [Mycobacterium tuberculosis H37Ra]
 gi|148823116|ref|YP_001287870.1| hypothetical protein TBFG_11933 [Mycobacterium tuberculosis F11]
 38 more sequence titles
 Length=143

 Score =  120 bits (301),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 60/123 (49%), Positives = 84/123 (69%), Gaps = 0/123 (0%)

Query  4    TQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVV  63
            T+  S  + + + L+A  +   SAV++H  G+IDA+NE  WQ LV+K+AA   AP P V+
Sbjct  15   TRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVI  74

Query  64   NLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTES  123
            ++  LDFMG CA AVLA E+ RCRRRGV++RLVS    VAR I ACG   ++P++ T E+
Sbjct  75   DIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVET  134

Query  124  ALS  126
            AL+
Sbjct  135  ALA  137


>gi|31793097|ref|NP_855590.1| hypothetical protein Mb1939 [Mycobacterium bovis AF2122/97]
 gi|121637810|ref|YP_978033.1| hypothetical protein BCG_1943 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224990294|ref|YP_002644981.1| hypothetical protein JTY_1927 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31618688|emb|CAD94641.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493457|emb|CAL71930.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224773407|dbj|BAH26213.1| hypothetical protein JTY_1927 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341601837|emb|CCC64511.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=143

 Score =  118 bits (296),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 59/123 (48%), Positives = 83/123 (68%), Gaps = 0/123 (0%)

Query  4    TQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVV  63
            T+  S  + + + L+A  +   SAV++H  G+IDA+NE  WQ LV+K+AA   AP P V+
Sbjct  15   TRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVI  74

Query  64   NLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTES  123
            ++  LDFMG CA AVLA E+ RCRRRGV++RLVS    VAR I ACG   ++P++   E+
Sbjct  75   DIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYAMVET  134

Query  124  ALS  126
            AL+
Sbjct  135  ALA  137


>gi|289758010|ref|ZP_06517388.1| anti-anti-sigma factor [Mycobacterium tuberculosis T85]
 gi|294996815|ref|ZP_06802506.1| hypothetical protein Mtub2_20513 [Mycobacterium tuberculosis 
210]
 gi|289713574|gb|EFD77586.1| anti-anti-sigma factor [Mycobacterium tuberculosis T85]
 gi|326903508|gb|EGE50441.1| hypothetical protein TBPG_01384 [Mycobacterium tuberculosis W-148]
Length=143

 Score =  118 bits (296),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 59/123 (48%), Positives = 83/123 (68%), Gaps = 0/123 (0%)

Query  4    TQAGSFTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVV  63
            T+  S  + + + L+A  +   SAV++H  G+IDA+NE  WQ LV+K+AA   AP P V+
Sbjct  15   TRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVI  74

Query  64   NLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTES  123
            ++  LDFMG CA AV A E+ RCRRRGV++RLVS    VAR I ACG   ++P++ T E+
Sbjct  75   DIRDLDFMGSCAYAVWAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVET  134

Query  124  ALS  126
            AL+
Sbjct  135  ALA  137


>gi|183982075|ref|YP_001850366.1| hypothetical protein MMAR_2061 [Mycobacterium marinum M]
 gi|183175401|gb|ACC40511.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=146

 Score =  117 bits (293),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 56/113 (50%), Positives = 80/113 (71%), Gaps = 1/113 (0%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            + L+AT     +AV+IHA GE+DAANEHTW+ L+ + AA+  +P   +V+++GLDFMGCC
Sbjct  28   STLRATTDFRSAAVLIHAGGEVDAANEHTWRQLIAETAASAPSPGLFIVDVSGLDFMGCC  87

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRA-VARIIHACGYGDVLPVHPTTESALS  126
            A  VLA +A RCR RGV++R+ S     V RI+ ACG  D LPV+ + ++AL+
Sbjct  88   AFEVLAEQAGRCRARGVELRIASAAHTRVTRIVAACGLSDALPVYRSVDAALA  140


>gi|118618620|ref|YP_906952.1| hypothetical protein MUL_3282 [Mycobacterium ulcerans Agy99]
 gi|118570730|gb|ABL05481.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=146

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 56/113 (50%), Positives = 79/113 (70%), Gaps = 1/113 (0%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            + L+A      +AV+IHA GE+DAANEHTW+ L+ + AA+  +P   VV+++GLDFMGCC
Sbjct  28   STLRAATDFRSTAVLIHAGGEVDAANEHTWRQLIAETAASAPSPGLFVVDVSGLDFMGCC  87

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRA-VARIIHACGYGDVLPVHPTTESALS  126
            A  VLA +A RCR RGV++R+ S     V RI+ ACG  D LPV+ + ++AL+
Sbjct  88   AFEVLAEQAGRCRARGVELRIASAAHTRVTRIVAACGLSDALPVYRSVDAALA  140


>gi|323719568|gb|EGB28692.1| hypothetical protein TMMG_01164 [Mycobacterium tuberculosis CDC1551A]
Length=105

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 53/99 (54%), Positives = 72/99 (73%), Gaps = 0/99 (0%)

Query  28   VIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHEAERCR  87
            +++H  G+IDA+NE  WQ LV+K+AA   AP P V+++  LDFMG CA AVLA E+ RCR
Sbjct  1    MVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCR  60

Query  88   RRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
            RRGV++RLVS    VAR I ACG   ++P++ T E+AL+
Sbjct  61   RRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  99


>gi|339294839|gb|AEJ46950.1| hypothetical protein CCDC5079_1760 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298464|gb|AEJ50574.1| hypothetical protein CCDC5180_1737 [Mycobacterium tuberculosis 
CCDC5180]
Length=101

 Score =  107 bits (267),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 51/93 (55%), Positives = 67/93 (73%), Gaps = 0/93 (0%)

Query  34   GEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDV  93
            G+IDA+NE  WQ LV+K+AA   AP P V+++  LDFMG CA AV A E+ RCRRRGV++
Sbjct  3    GDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVWAQESVRCRRRGVNM  62

Query  94   RLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
            RLVS    VAR I ACG   ++P++ T E+AL+
Sbjct  63   RLVSNQPIVARTIAACGLRRLIPLYATVETALA  95


>gi|183982806|ref|YP_001851097.1| hypothetical protein MMAR_2800 [Mycobacterium marinum M]
 gi|183176132|gb|ACC41242.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=146

 Score =  100 bits (250),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 56/111 (51%), Positives = 77/111 (70%), Gaps = 0/111 (0%)

Query  16   ALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCA  75
             L+A  +   SAV++H  G++DA+NE  WQ LV ++AA   AP P V+++  LDF+G CA
Sbjct  30   GLRAVTECTGSAVVVHVGGDVDASNEVVWQRLVNRSAAIAIAPGPFVIDIRDLDFIGSCA  89

Query  76   VAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
             AVLA E+ RCRRRGV++RLVS    VAR I ACG   +LP++ + E+ALS
Sbjct  90   YAVLAQESVRCRRRGVNLRLVSNQPIVARTIAACGLRRLLPMYSSVEAALS  140


>gi|118618334|ref|YP_906666.1| hypothetical protein MUL_2925 [Mycobacterium ulcerans Agy99]
 gi|118570444|gb|ABL05195.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=143

 Score =  100 bits (249),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 56/111 (51%), Positives = 77/111 (70%), Gaps = 0/111 (0%)

Query  16   ALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCA  75
             L+A  +   SAV++H  G++DA+NE  WQ LV ++AA   AP P V+++  LDF+G CA
Sbjct  27   GLRAVTECTGSAVVVHVGGDVDASNEVVWQRLVNRSAAIAIAPGPFVIDIRDLDFIGSCA  86

Query  76   VAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
             AVLA E+ RCRRRGV++RLVS    VAR I ACG   +LP++ + E+ALS
Sbjct  87   YAVLAQESVRCRRRGVNLRLVSNQPIVARTIAACGLRRLLPMYSSVEAALS  137


>gi|333991578|ref|YP_004524192.1| hypothetical protein JDM601_2938 [Mycobacterium sp. JDM601]
 gi|333487546|gb|AEF36938.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=164

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 49/112 (44%), Positives = 69/112 (62%), Gaps = 0/112 (0%)

Query  17   LKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAV  76
            L+  ++    A+++ A G +DA+N   W+ LV +AAA T  P PLV++ +GL+FMG CA 
Sbjct  40   LRVVLERSGPALVVAASGSVDASNVEVWRRLVNEAAAVTHGPGPLVIDSSGLEFMGICAF  99

Query  77   AVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSAT  128
            AVL  E+ RCRRRGV +RLVS    V R+++A G    L    T + AL  T
Sbjct  100  AVLVEESARCRRRGVSLRLVSSQPLVGRVVNAAGLHSELAFCVTIDEALGDT  151


>gi|289751265|ref|ZP_06510643.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691852|gb|EFD59281.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=86

 Score = 77.4 bits (189),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 37/60 (62%), Positives = 44/60 (74%), Gaps = 0/60 (0%)

Query  67   GLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
            GLDFMGCCA A LA EA+RCR RG+D+RLVS    VARI  A G   VLP++PT ++AL 
Sbjct  18   GLDFMGCCAFAALADEAQRCRCRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPTVDTALG  77


>gi|257055169|ref|YP_003133001.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
 gi|256585041|gb|ACU96174.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
Length=151

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 34/104 (33%), Positives = 59/104 (57%), Gaps = 0/104 (0%)

Query  23   HHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHE  82
            + ++ V++   GEID +      + + +A    + P+ L+V+L+ + F+G   +A+L   
Sbjct  25   YGETGVVVTVSGEIDLSTRDELAEYLNRALETVSPPQSLIVDLSEVTFLGSAGLALLLDT  84

Query  83   AERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
             +   RRGV +R+V   RAV R I A G  D+LP+H T + AL+
Sbjct  85   QDAAVRRGVPLRVVGTQRAVRRPIEAVGLSDMLPLHTTVQEALA  128


>gi|302555832|ref|ZP_07308174.1| anti-sigma F factor antagonist [Streptomyces viridochromogenes 
DSM 40736]
 gi|302473450|gb|EFL36543.1| anti-sigma F factor antagonist [Streptomyces viridochromogenes 
DSM 40736]
Length=127

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 35/119 (30%), Positives = 60/119 (51%), Gaps = 8/119 (6%)

Query  12   PVSNALKATIQHH--DSAVIIHARGEIDAANEHTWQDLVTKAAAA--TTAPEPLVVNLNG  67
            P    ++ +++H       ++  RGEID    H  QD++++A  A  TT P  +V +L+G
Sbjct  12   PADRPMRLSVEHRVLSGVRVVTLRGEID----HDVQDVLSQALLAENTTVPLRMVADLSG  67

Query  68   LDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
            + FM    + V     ++    G  VR+     +V R++   G   ++P HPTTE AL+
Sbjct  68   VTFMDSSGINVFVAAYQQASDTGGWVRIAGAQESVLRVLQLVGVDTLIPCHPTTEQALA  126


>gi|256379365|ref|YP_003103025.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
 gi|255923668|gb|ACU39179.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
Length=138

 Score = 57.0 bits (136),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 34/103 (34%), Positives = 51/103 (50%), Gaps = 3/103 (2%)

Query  25   DSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHEAE  84
            D   ++   GE+D     T   L ++     T    LV++L G+ F+G   +AVL   A+
Sbjct  36   DGVTVVRVTGEVDML---TAPRLRSEVIERITTGGTLVLDLGGVGFLGSAGLAVLVEAAQ  92

Query  85   RCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            R  R     R+V+ +RAV R + A G G+V  VHP+   AL  
Sbjct  93   RSTREQAAFRVVAVERAVLRPLAATGLGEVFSVHPSVAEALGG  135


>gi|41406478|ref|NP_959314.1| hypothetical protein MAP0380 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394827|gb|AAS02697.1| hypothetical protein MAP_0380 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=122

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 29/113 (26%), Positives = 55/113 (49%), Gaps = 3/113 (2%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            +++   ++ HD   ++   GEID       +  +   A    +P  LV++L+ ++F+G  
Sbjct  5    DSITTLVEDHDGVSVVSVSGEIDMVTAPALEQAI--GAVVADSPPALVIDLSAVEFLGSV  62

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
             + +LA   E+  +      +V+R  A  R IH  G     P++PT + AL+A
Sbjct  63   GLKILAATYEKLGKE-TGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTA  114


>gi|336460845|gb|EGO39730.1| anti-anti-sigma factor [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=122

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 29/113 (26%), Positives = 55/113 (49%), Gaps = 3/113 (2%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            +++   ++ HD   ++   GEID       +  +   A    +P  LV++L+ ++F+G  
Sbjct  5    DSITTLVEDHDGVSVVSVSGEIDLVTAPALEQAI--GAVVADSPPALVIDLSAVEFLGSV  62

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
             + +LA   E+  +      +V+R  A  R IH  G     P++PT + AL+A
Sbjct  63   GLKILAATYEKLGKE-TGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTA  114


>gi|118462796|ref|YP_879719.1| anti-anti-sigma factor [Mycobacterium avium 104]
 gi|254773441|ref|ZP_05214957.1| hypothetical protein MaviaA2_02016 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118164083|gb|ABK64980.1| anti-anti-sigma factor [Mycobacterium avium 104]
Length=113

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 29/107 (28%), Positives = 52/107 (49%), Gaps = 3/107 (2%)

Query  21   IQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLA  80
            ++ HD   ++   GEID       +  +   A    +P  LV++L+ ++F+G   + +LA
Sbjct  2    VEDHDGVSVVSVSGEIDLVTAPALEQAI--GAVVADSPPALVIDLSAVEFLGSVGLKILA  59

Query  81   HEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
               E+  +      +V+R  A  R IH  G     P++PT + AL+A
Sbjct  60   ATYEKLGKE-TGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTA  105


>gi|254820821|ref|ZP_05225822.1| hypothetical protein MintA_12883 [Mycobacterium intracellulare 
ATCC 13950]
Length=113

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 29/107 (28%), Positives = 52/107 (49%), Gaps = 3/107 (2%)

Query  21   IQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLA  80
            ++ HD   ++   GEID       +  +   A    +P  LV++L+ ++F+G   + +LA
Sbjct  2    VEDHDGVSVVSVSGEIDLVTAPALEQAI--GAVVAESPTALVIDLSAVEFLGSVGLKILA  59

Query  81   HEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
               E+  +      +V+R  A  R IH  G     P++PT + AL+A
Sbjct  60   ATYEKLGKD-TGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTA  105


>gi|226305069|ref|YP_002765027.1| anti-anti-sigma factor [Rhodococcus erythropolis PR4]
 gi|226184184|dbj|BAH32288.1| putative anti-anti-sigma factor [Rhodococcus erythropolis PR4]
Length=199

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 33/97 (35%), Positives = 54/97 (56%), Gaps = 4/97 (4%)

Query  29   IIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHEAERCRR  88
            +IH RGEID  + + ++D +T   AA      LVV+L+ L+FMG C ++VL+  + R R 
Sbjct  97   VIHVRGEIDLMSANAFRDFLTYHVAAD---RTLVVDLSELEFMGTCGLSVLSVLSTRSRD  153

Query  89   RGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESAL  125
             G  + LV   R V R++ A G   +   + + + A+
Sbjct  154  VGGTLALVC-ARPVQRLLKAAGQESMFACYESLDHAI  189


>gi|256377807|ref|YP_003101467.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
 gi|255922110|gb|ACU37621.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
Length=121

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 34/110 (31%), Positives = 58/110 (53%), Gaps = 4/110 (3%)

Query  19   ATIQHHDSAVIIHARGEIDAANEHTWQ-DLVTKAAAATTAPEPLVVNLNGLDFMGCCAVA  77
            A  +  D  +I    GE+DAA+    + +++ +   AT A   LV++L  + F G   ++
Sbjct  7    AVTRESDGVLITRITGEVDAASTDPIRAEVLDQLDQATGA---LVLDLREVVFFGSSGIS  63

Query  78   VLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            +LA    R +RRG+ + +V+  RAV R +   G  D L + PT + A+ A
Sbjct  64   LLAESYARAQRRGLALAVVADQRAVLRPLQVTGMADSLLIKPTLDEAVEA  113


>gi|284990618|ref|YP_003409172.1| anti-sigma-factor antagonist [Geodermatophilus obscurus DSM 43160]
 gi|284063863|gb|ADB74801.1| anti-sigma-factor antagonist [Geodermatophilus obscurus DSM 43160]
Length=119

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  58   PEPLVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPV  117
            P+ LV++L+G+ F+G   +AVL    +  R R VD+RL++  RAV R +   G  D+  +
Sbjct  54   PQTLVIDLSGVQFLGSAGLAVLVETQKSARSRDVDLRLIATTRAVTRPLEVTGLIDLFTI  113


>gi|183985150|ref|YP_001853441.1| anti-anti-sigma regulatory factor [Mycobacterium marinum M]
 gi|183178476|gb|ACC43586.1| anti-anti-sigma regulatory factor [Mycobacterium marinum M]
Length=122

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 28/113 (25%), Positives = 55/113 (49%), Gaps = 3/113 (2%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            +++ A +  HD   ++   GEID       ++ +   A    +P  LV++L+G++F+G  
Sbjct  5    DSITAVVTDHDGVTVLSIGGEIDLVTAPALEEAI--GAVVADSPTALVIDLSGVEFLGSV  62

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
             + +LA   E+      +  +V++  A  R IH  G     P++P  + AL+ 
Sbjct  63   GLKILAATYEKL-GTAAEFGVVAQGPATRRPIHLTGLDKTFPLYPALDDALTG  114


>gi|342861968|ref|ZP_08718612.1| hypothetical protein MCOL_23875 [Mycobacterium colombiense CECT 
3035]
 gi|342130508|gb|EGT83817.1| hypothetical protein MCOL_23875 [Mycobacterium colombiense CECT 
3035]
Length=113

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 27/107 (26%), Positives = 52/107 (49%), Gaps = 3/107 (2%)

Query  21   IQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLA  80
            ++ HD   ++   GEID       +  ++  A    +P  L+++L+ ++F+G   + +LA
Sbjct  2    VEDHDGVSVVSVSGEIDLVTAPALEQAIS--AVVADSPTALIIDLSAVEFLGSVGLKILA  59

Query  81   HEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
               E+   +     +V+R  A  R IH  G     P++PT + AL+ 
Sbjct  60   ATYEKLGNQ-TGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTG  105


>gi|296166749|ref|ZP_06849173.1| anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897919|gb|EFG77501.1| anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=122

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 29/113 (26%), Positives = 53/113 (47%), Gaps = 3/113 (2%)

Query  15   NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCC  74
            +++   ++ HD   ++   GEID       +  +   A     P  LV++L+ ++F+G  
Sbjct  5    DSITTLVEDHDGVSVVSVSGEIDLVTAPALEQAI--GAVVADNPAALVIDLSAVEFLGSV  62

Query  75   AVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
             + +LA   E+         +V+R  A  R IH  G     P++PT + AL+A
Sbjct  63   GLKILAATYEKLGN-ATGFAVVARGPATRRPIHLTGLDKTFPLYPTLDDALTA  114


>gi|290955149|ref|YP_003486331.1| anti-sigma-factor antagonist [Streptomyces scabiei 87.22]
 gi|260644675|emb|CBG67760.1| putative anti-sigma-factor antagonist [Streptomyces scabiei 87.22]
Length=122

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 36/115 (32%), Positives = 53/115 (47%), Gaps = 9/115 (7%)

Query  18   KATIQHH--DSAVIIHARGEIDAANEHTWQDLVTKA--AAATTAPEP-LVVNLNGLDFMG  72
            + +  HH  D   ++  RGEID    H  +DL  +A       AP P +VV+L G+ FM 
Sbjct  12   RLSFAHHVVDDIRVVTMRGEID----HDVKDLFEEALLTGGVAAPPPRIVVDLGGVTFMD  67

Query  73   CCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
               + VL     R       +R+ +   +V R++   G    +P HPT E ALS 
Sbjct  68   SSGINVLVAAHRRVSGERGWLRIAAAQESVLRVLQLVGVDTFIPCHPTVEQALSG  122


>gi|318041274|ref|ZP_07973230.1| anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
[Synechococcus sp. CB0101]
Length=115

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 26/112 (24%), Positives = 54/112 (49%), Gaps = 3/112 (2%)

Query  16   ALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCA  75
            +L+   Q  D  ++    G++DA +E  +   +T+    T+ P+PLV++L+ +DF+    
Sbjct  4    SLRGGFQQQDGCLLFSFTGQLDAYSEKQFLAFITEHL--TSTPQPLVIDLSKIDFIDSSG  61

Query  76   VAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            +  L   A+ C  + +   +V   R V + +        L + P  ++AL +
Sbjct  62   LGALVQMAKHCNDQAMQFLVVGNAR-VVQTVKLVRLEQFLHLQPDLDTALGS  112


>gi|240172555|ref|ZP_04751214.1| anti-anti-sigma regulatory factor [Mycobacterium kansasii ATCC 
12478]
Length=122

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 30/119 (26%), Positives = 56/119 (48%), Gaps = 5/119 (4%)

Query  9    FTTPVSNALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGL  68
             +TP  +++ A +  HD   ++   GEID       ++ +    A    P  L+++L+G+
Sbjct  1    MSTP--DSITAEVTDHDGVAVLSIGGEIDLVTAPALEEAIGGVVADN--PSALIIDLSGV  56

Query  69   DFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            +F+G   + +LA   E+         +V+R  A  R IH  G      ++PT + AL+ 
Sbjct  57   EFLGSVGLKILAATYEKL-GSAAQFGVVARGPATRRPIHLTGLDKTFALYPTLDEALTG  114


>gi|256376432|ref|YP_003100092.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
 gi|255920735|gb|ACU36246.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
Length=118

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 32/102 (32%), Positives = 47/102 (47%), Gaps = 0/102 (0%)

Query  26   SAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHEAER  85
             AV++H  GEID          +  A A    PEP+VV+L  + F G   +  L     +
Sbjct  17   GAVVLHVSGEIDQLTVEPLHRELLSALARVRPPEPVVVDLTEVGFFGSAGLNELVTGHLQ  76

Query  86   CRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
                G  + +V+  R V R +   G  + L VHPT ++AL A
Sbjct  77   AELLGTRLSVVAGHREVLRPLAISGLDEQLDVHPTLQAALGA  118


>gi|229490190|ref|ZP_04384037.1| anti-sigma factor antagonist [Rhodococcus erythropolis SK121]
 gi|229322938|gb|EEN88712.1| anti-sigma factor antagonist [Rhodococcus erythropolis SK121]
Length=103

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 32/97 (33%), Positives = 53/97 (55%), Gaps = 4/97 (4%)

Query  29   IIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHEAERCRR  88
            +I  RGEID  + + ++D +T   AA      LVV+L+ L+FMG C ++VL+  + R R 
Sbjct  1    MIKVRGEIDLMSANAFRDFLTYHVAA---DRTLVVDLSELEFMGTCGLSVLSVLSTRSRD  57

Query  89   RGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESAL  125
             G  + LV   R V R++ A G   +   + + + A+
Sbjct  58   VGGTLALVC-ARPVQRLLKAAGQESMFACYESLDHAI  93


>gi|54024402|ref|YP_118644.1| putative anti-anti-sigma factor [Nocardia farcinica IFM 10152]
 gi|54015910|dbj|BAD57280.1| putative anti-anti-sigma factor [Nocardia farcinica IFM 10152]
Length=161

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 58/105 (56%), Gaps = 7/105 (6%)

Query  27   AVIIHARGEIDAANEHTWQ----DLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHE  82
            AV++  RG  DA     W+    + V  AAA+  A   L+V+ + +DF+ C A+ VLA E
Sbjct  39   AVVLSPRGAADAYTLDLWRCAVREAVDTAAASACA---LIVDTSRIDFLSCRALVVLAEE  95

Query  83   AERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            A R   RGV V LV+ +R +ARI         LP+H T  SAL+A
Sbjct  96   ARRAAERGVPVSLVTPNRTIARIAAVDPATVALPIHSTVVSALTA  140


>gi|302337831|ref|YP_003803037.1| anti-sigma-factor antagonist [Spirochaeta smaragdinae DSM 11293]
 gi|301635016|gb|ADK80443.1| anti-sigma-factor antagonist [Spirochaeta smaragdinae DSM 11293]
Length=116

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/105 (25%), Positives = 52/105 (50%), Gaps = 2/105 (1%)

Query  21   IQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLA  80
            ++ +++  II   G++D  N H  +D+V K  A   +   LV+NL  +D++    V  L 
Sbjct  5    LRRYNTIYIIDISGDMDLYNAHRLKDVVAKLIAKGVSE--LVINLEKVDYLDSSGVGALI  62

Query  81   HEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESAL  125
            H   + ++R + +R+     +V ++I      D  P+  + + AL
Sbjct  63   HVFTQVKQRELQMRITHVHGSVEKVIRLTKLMDYFPIVDSVKDAL  107


>gi|108804526|ref|YP_644463.1| anti-sigma-factor antagonist [Rubrobacter xylanophilus DSM 9941]
 gi|108765769|gb|ABG04651.1| anti-sigma-factor antagonist [Rubrobacter xylanophilus DSM 9941]
Length=125

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 48/98 (49%), Gaps = 2/98 (2%)

Query  29   IIHARGEIDAANEHTWQDLVTKA--AAATTAPEPLVVNLNGLDFMGCCAVAVLAHEAERC  86
            ++   GE++    H +++ + +A  +A  + P  +VV+++ L+FM    V+ L       
Sbjct  20   VVKVSGELELLTAHRFREALEEATASAGDSRPRTVVVDMSNLEFMDSSGVSALLAGTRGF  79

Query  87   RRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESA  124
               G  VRLV RD  V R +   G   + P++P   SA
Sbjct  80   TGGGGRVRLVVRDSPVRRTLRVTGLDRIFPIYPDVRSA  117


>gi|302526682|ref|ZP_07279024.1| predicted protein [Streptomyces sp. AA4]
 gi|302435577|gb|EFL07393.1| predicted protein [Streptomyces sp. AA4]
Length=186

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 36/112 (33%), Positives = 53/112 (48%), Gaps = 9/112 (8%)

Query  20   TIQHHD--SAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVA  77
            +I+  D   A ++   G++D          V  A   T  P  LV++L G+DF+    + 
Sbjct  79   SIERADRSPAAVLALNGDLDLGTAPKLTAAV--AETVTGKPPVLVLDLAGVDFLASAGLT  136

Query  78   VLAHEAERCRR--RGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALSA  127
            VL      CR    G +VR+V+  RA  R I   G    LP++PT E AL+A
Sbjct  137  VLLAA---CREAPEGTEVRIVASGRATLRPIQLTGLEQSLPLYPTLEEALAA  185


>gi|256379408|ref|YP_003103068.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
 gi|255923711|gb|ACU39222.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
Length=118

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 30/107 (29%), Positives = 50/107 (47%), Gaps = 6/107 (5%)

Query  22   QHHDSAVIIHARGEIDAANEHTWQDLVTKAAAA--TTAPEPLVVNLNGLDFMGCCAVAVL  79
            +  D  V++H  GE+D     T  D + +   A        +VV+L G+ F+G   +  L
Sbjct  14   EPEDGVVVLHVSGELDT----TSADELARPLKAHLGGGARSVVVDLGGVRFLGSAGLESL  69

Query  80   AHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  126
                +    +GV++ LV+  R+  R + A G   V  + PT E AL+
Sbjct  70   VMGRKLAEEQGVELALVASSRSALRPLQATGLDSVFTIKPTVEEALA  116


>gi|311894138|dbj|BAJ26546.1| putative antagonist protein [Kitasatospora setae KM-6054]
Length=123

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 32/97 (33%), Positives = 48/97 (50%), Gaps = 2/97 (2%)

Query  29   IIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVAVLAHEAERCRR  88
            ++   GE+D  +    +D++ +A A    P  LVV+  GLDF     + +L       RR
Sbjct  1    MVRPEGELDHDSVGPLRDVLERAVA--DPPGRLVVDCGGLDFCDSTGLNLLLRAHGAARR  58

Query  89   RGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESAL  125
             GV + L +    + RI+   G  +VL VHPT E AL
Sbjct  59   AGVPLLLAAPGPVLGRILEITGADEVLDVHPTVEDAL  95



Lambda     K      H
   0.320    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128801298864


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40