BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1366
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608506|ref|NP_215882.1| hypothetical protein Rv1366 [Mycoba... 549 1e-154
gi|306780697|ref|ZP_07419034.1| hypothetical protein TMBG_01197 ... 548 3e-154
gi|323720121|gb|EGB29225.1| hypothetical protein TMMG_02069 [Myc... 533 1e-149
gi|308373121|ref|ZP_07667513.1| hypothetical protein TMEG_01270 ... 531 3e-149
gi|308399732|ref|ZP_07493045.2| hypothetical protein TMLG_03460 ... 504 6e-141
gi|308374294|ref|ZP_07667751.1| RelA / SpoT regions containing p... 503 1e-140
gi|167969117|ref|ZP_02551394.1| hypothetical protein MtubH3_1423... 494 4e-138
gi|308231820|ref|ZP_07663940.1| RelA / SpoT regions containing p... 455 3e-126
gi|300780486|ref|ZP_07090342.1| region found in RelA/SpoT protei... 138 8e-31
gi|227832425|ref|YP_002834132.1| hypothetical protein cauri_0597... 125 9e-27
gi|262183713|ref|ZP_06043134.1| hypothetical protein CaurA7_0696... 125 9e-27
gi|225020776|ref|ZP_03709968.1| hypothetical protein CORMATOL_00... 120 3e-25
gi|331695000|ref|YP_004331239.1| RelA/SpoT domain-containing pro... 87.8 2e-15
gi|227488296|ref|ZP_03918612.1| conserved hypothetical protein [... 87.4 2e-15
gi|227488312|ref|ZP_03918628.1| conserved hypothetical protein [... 79.7 4e-13
gi|344044996|gb|EGV40670.1| hypothetical protein CgS9114_06720 [... 78.2 1e-12
gi|258592812|emb|CBE69121.1| protein of unknown function [NC10 b... 70.9 2e-10
gi|311067651|ref|YP_003972574.1| (p)ppGpp synthetase [Bacillus a... 58.5 1e-06
gi|302520648|ref|ZP_07272990.1| RelA/SpoT domain-containing prot... 58.5 1e-06
gi|221322524|ref|ZP_03603818.1| hypothetical protein BsubsS_0639... 56.6 4e-06
gi|16078225|ref|NP_389042.1| (p)ppGpp synthetase [Bacillus subti... 56.6 4e-06
gi|291483640|dbj|BAI84715.1| ppGpp synthetase [Bacillus subtilis... 56.6 4e-06
gi|308173125|ref|YP_003919830.1| (p)ppGpp synthetase [Bacillus a... 55.8 6e-06
gi|21225239|ref|NP_631018.1| hypothetical protein SCO6952 [Strep... 55.5 8e-06
gi|226355798|ref|YP_002785538.1| hypothetical protein Deide_0906... 55.5 9e-06
gi|56964303|ref|YP_176034.1| hypothetical protein ABC2538 [Bacil... 55.5 9e-06
gi|296332582|ref|ZP_06875043.1| (p)ppGpp synthetase [Bacillus su... 55.1 1e-05
gi|240169334|ref|ZP_04747993.1| RelA/SpoT domain-containing prot... 54.3 2e-05
gi|303327180|ref|ZP_07357622.1| RelA/SpoT [Desulfovibrio sp. 3_1... 54.3 2e-05
gi|229916036|ref|YP_002884682.1| RelA/SpoT domain protein [Exigu... 53.1 4e-05
gi|238923442|ref|YP_002936958.1| GTP pyrophosphokinase [Eubacter... 53.1 4e-05
gi|291528369|emb|CBK93955.1| Uncharacterized protein conserved i... 53.1 4e-05
gi|296129052|ref|YP_003636302.1| RelA/SpoT domain protein [Cellu... 52.8 5e-05
gi|169334249|ref|ZP_02861442.1| hypothetical protein ANASTE_0064... 52.8 6e-05
gi|331267103|ref|YP_004326733.1| hypothetical protein SOR_1745 [... 52.4 6e-05
gi|336430519|ref|ZP_08610465.1| hypothetical protein HMPREF0994_... 52.4 8e-05
gi|336433052|ref|ZP_08612882.1| hypothetical protein HMPREF0991_... 52.0 9e-05
gi|154503133|ref|ZP_02040193.1| hypothetical protein RUMGNA_0095... 52.0 9e-05
gi|153854942|ref|ZP_01996155.1| hypothetical protein DORLON_0216... 51.6 1e-04
gi|194014827|ref|ZP_03053444.1| conserved protein YjbM [Bacillus... 51.6 1e-04
gi|302337075|ref|YP_003802281.1| RelA/SpoT domain-containing pro... 51.6 1e-04
gi|157691871|ref|YP_001486333.1| hypothetical protein BPUM_1089 ... 51.6 1e-04
gi|51892774|ref|YP_075465.1| putative GTP pyrophosphokinase [Sym... 51.6 1e-04
gi|88798383|ref|ZP_01113968.1| hypothetical protein MED297_07991... 51.6 1e-04
gi|52079663|ref|YP_078454.1| hypothetical protein BL03338 [Bacil... 51.2 2e-04
gi|313115928|ref|ZP_07801355.1| RelA/SpoT domain protein [Faecal... 51.2 2e-04
gi|344327764|gb|EGW39179.1| region found in RelA / SpoT s family... 50.8 2e-04
gi|225569394|ref|ZP_03778419.1| hypothetical protein CLOHYLEM_05... 50.8 2e-04
gi|166031544|ref|ZP_02234373.1| hypothetical protein DORFOR_0124... 50.8 2e-04
gi|226322443|ref|ZP_03797961.1| hypothetical protein COPCOM_0021... 50.8 2e-04
>gi|15608506|ref|NP_215882.1| hypothetical protein Rv1366 [Mycobacterium tuberculosis H37Rv]
gi|15840824|ref|NP_335861.1| hypothetical protein MT1412 [Mycobacterium tuberculosis CDC1551]
gi|31792562|ref|NP_855055.1| hypothetical protein Mb1401 [Mycobacterium bovis AF2122/97]
58 more sequence titles
Length=273
Score = 549 bits (1415), Expect = 1e-154, Method: Compositional matrix adjust.
Identities = 272/273 (99%), Positives = 273/273 (100%), Gaps = 0/273 (0%)
Query 1 VVVALVGSAIVDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQD 60
+VVALVGSAIVDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQD
Sbjct 1 MVVALVGSAIVDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQD 60
Query 61 RIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLA 120
RIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLA
Sbjct 61 RIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLA 120
Query 121 REIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLAD 180
REIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLAD
Sbjct 121 REIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLAD 180
Query 181 AYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMA 240
AYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMA
Sbjct 181 AYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMA 240
Query 241 LGEASKNKATVLATTKFRLERAINEAESAGGGG 273
LGEASKNKATVLATTKFRLERAINEAESAGGGG
Sbjct 241 LGEASKNKATVLATTKFRLERAINEAESAGGGG 273
>gi|306780697|ref|ZP_07419034.1| hypothetical protein TMBG_01197 [Mycobacterium tuberculosis SUMu002]
gi|306784097|ref|ZP_07422419.1| hypothetical protein TMCG_01001 [Mycobacterium tuberculosis SUMu003]
gi|306788464|ref|ZP_07426786.1| hypothetical protein TMDG_03482 [Mycobacterium tuberculosis SUMu004]
9 more sequence titles
Length=273
Score = 548 bits (1412), Expect = 3e-154, Method: Compositional matrix adjust.
Identities = 271/273 (99%), Positives = 272/273 (99%), Gaps = 0/273 (0%)
Query 1 VVVALVGSAIVDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQD 60
+VVALVGSAIVDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQD
Sbjct 1 MVVALVGSAIVDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQD 60
Query 61 RIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLA 120
RIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDAD LLGEQTRLA
Sbjct 61 RIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADFLLGEQTRLA 120
Query 121 REIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLAD 180
REIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLAD
Sbjct 121 REIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLAD 180
Query 181 AYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMA 240
AYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMA
Sbjct 181 AYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMA 240
Query 241 LGEASKNKATVLATTKFRLERAINEAESAGGGG 273
LGEASKNKATVLATTKFRLERAINEAESAGGGG
Sbjct 241 LGEASKNKATVLATTKFRLERAINEAESAGGGG 273
>gi|323720121|gb|EGB29225.1| hypothetical protein TMMG_02069 [Mycobacterium tuberculosis CDC1551A]
gi|339294344|gb|AEJ46455.1| hypothetical protein CCDC5079_1265 [Mycobacterium tuberculosis
CCDC5079]
gi|339297983|gb|AEJ50093.1| hypothetical protein CCDC5180_1256 [Mycobacterium tuberculosis
CCDC5180]
Length=263
Score = 533 bits (1372), Expect = 1e-149, Method: Compositional matrix adjust.
Identities = 262/263 (99%), Positives = 263/263 (100%), Gaps = 0/263 (0%)
Query 11 VDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSAS 70
+DLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSAS
Sbjct 1 MDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSAS 60
Query 71 ELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 130
ELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD
Sbjct 61 ELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 120
Query 131 QPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDE 190
QPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDE
Sbjct 121 QPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDE 180
Query 191 RPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKAT 250
RPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKAT
Sbjct 181 RPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKAT 240
Query 251 VLATTKFRLERAINEAESAGGGG 273
VLATTKFRLERAINEAESAGGGG
Sbjct 241 VLATTKFRLERAINEAESAGGGG 263
>gi|308373121|ref|ZP_07667513.1| hypothetical protein TMEG_01270 [Mycobacterium tuberculosis SUMu005]
gi|308338752|gb|EFP27603.1| hypothetical protein TMEG_01270 [Mycobacterium tuberculosis SUMu005]
Length=263
Score = 531 bits (1369), Expect = 3e-149, Method: Compositional matrix adjust.
Identities = 261/263 (99%), Positives = 262/263 (99%), Gaps = 0/263 (0%)
Query 11 VDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSAS 70
+DLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSAS
Sbjct 1 MDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSAS 60
Query 71 ELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 130
ELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDAD LLGEQTRLAREIADHFGAD
Sbjct 61 ELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADFLLGEQTRLAREIADHFGAD 120
Query 131 QPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDE 190
QPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDE
Sbjct 121 QPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDE 180
Query 191 RPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKAT 250
RPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKAT
Sbjct 181 RPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKAT 240
Query 251 VLATTKFRLERAINEAESAGGGG 273
VLATTKFRLERAINEAESAGGGG
Sbjct 241 VLATTKFRLERAINEAESAGGGG 263
>gi|308399732|ref|ZP_07493045.2| hypothetical protein TMLG_03460 [Mycobacterium tuberculosis SUMu012]
gi|308366420|gb|EFP55271.1| hypothetical protein TMLG_03460 [Mycobacterium tuberculosis SUMu012]
Length=250
Score = 504 bits (1297), Expect = 6e-141, Method: Compositional matrix adjust.
Identities = 249/250 (99%), Positives = 250/250 (100%), Gaps = 0/250 (0%)
Query 24 VRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDT 83
+RRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDT
Sbjct 1 MRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDT 60
Query 84 LLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHA 143
LLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHA
Sbjct 61 LLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHA 120
Query 144 GYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQ 203
GYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQ
Sbjct 121 GYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQ 180
Query 204 LQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKATVLATTKFRLERAI 263
LQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKATVLATTKFRLERAI
Sbjct 181 LQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKATVLATTKFRLERAI 240
Query 264 NEAESAGGGG 273
NEAESAGGGG
Sbjct 241 NEAESAGGGG 250
>gi|308374294|ref|ZP_07667751.1| RelA / SpoT regions containing protein [Mycobacterium tuberculosis
SUMu006]
gi|308342451|gb|EFP31302.1| RelA / SpoT regions containing protein [Mycobacterium tuberculosis
SUMu006]
Length=250
Score = 503 bits (1295), Expect = 1e-140, Method: Compositional matrix adjust.
Identities = 248/250 (99%), Positives = 249/250 (99%), Gaps = 0/250 (0%)
Query 24 VRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDT 83
+RRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDT
Sbjct 1 MRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDT 60
Query 84 LLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHA 143
LLAKLRRRPYLQLNTIQDIAGVRIDAD LLGEQTRLAREIADHFGADQPAIHDLRDHPHA
Sbjct 61 LLAKLRRRPYLQLNTIQDIAGVRIDADFLLGEQTRLAREIADHFGADQPAIHDLRDHPHA 120
Query 144 GYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQ 203
GYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQ
Sbjct 121 GYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQ 180
Query 204 LQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKATVLATTKFRLERAI 263
LQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKATVLATTKFRLERAI
Sbjct 181 LQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKATVLATTKFRLERAI 240
Query 264 NEAESAGGGG 273
NEAESAGGGG
Sbjct 241 NEAESAGGGG 250
>gi|167969117|ref|ZP_02551394.1| hypothetical protein MtubH3_14233 [Mycobacterium tuberculosis
H37Ra]
Length=245
Score = 494 bits (1273), Expect = 4e-138, Method: Compositional matrix adjust.
Identities = 244/245 (99%), Positives = 245/245 (100%), Gaps = 0/245 (0%)
Query 29 VALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDTLLAKL 88
+ALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDTLLAKL
Sbjct 1 MALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDTLLAKL 60
Query 89 RRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHAGYRAV 148
RRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHAGYRAV
Sbjct 61 RRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHAGYRAV 120
Query 149 HVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQLQELV 208
HVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQLQELV
Sbjct 121 HVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQLQELV 180
Query 209 GVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKATVLATTKFRLERAINEAES 268
GVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKATVLATTKFRLERAINEAES
Sbjct 181 GVMQDASADLAMHEAEWQHCAEIEYPGQRAMALGEASKNKATVLATTKFRLERAINEAES 240
Query 269 AGGGG 273
AGGGG
Sbjct 241 AGGGG 245
>gi|308231820|ref|ZP_07663940.1| RelA / SpoT regions containing protein [Mycobacterium tuberculosis
SUMu001]
gi|308215973|gb|EFO75372.1| RelA / SpoT regions containing protein [Mycobacterium tuberculosis
SUMu001]
Length=226
Score = 455 bits (1171), Expect = 3e-126, Method: Compositional matrix adjust.
Identities = 226/226 (100%), Positives = 226/226 (100%), Gaps = 0/226 (0%)
Query 48 MLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRI 107
MLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRI
Sbjct 1 MLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRI 60
Query 108 DADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTIL 167
DADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTIL
Sbjct 61 DADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTIL 120
Query 168 QSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQH 227
QSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQH
Sbjct 121 QSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQH 180
Query 228 CAEIEYPGQRAMALGEASKNKATVLATTKFRLERAINEAESAGGGG 273
CAEIEYPGQRAMALGEASKNKATVLATTKFRLERAINEAESAGGGG
Sbjct 181 CAEIEYPGQRAMALGEASKNKATVLATTKFRLERAINEAESAGGGG 226
>gi|300780486|ref|ZP_07090342.1| region found in RelA/SpoT protein [Corynebacterium genitalium
ATCC 33030]
gi|300534596|gb|EFK55655.1| region found in RelA/SpoT protein [Corynebacterium genitalium
ATCC 33030]
Length=291
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/199 (44%), Positives = 113/199 (57%), Gaps = 20/199 (10%)
Query 11 VDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIE------- 63
VDL+S+PP+S ++R G AL G +D YAE++ WH DL +++ E
Sbjct 10 VDLNSKPPFSKGDMKRAGKALMVG--EGLDVEKYAEIVAWHQDLIVLIRETCERVIARYQ 67
Query 64 ---GRS---WSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQT 117
G S S S + + R KS+DTL AKL R + L++IQD AGVR D + L QT
Sbjct 68 EEYGDSDHLHSISRVFGSDRTKSKDTLTAKLGRIG-MSLDSIQDFAGVRYDIEAGLTAQT 126
Query 118 RLAREIADHFGADQPA---IHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANF 174
LA F +D A + D R GYRA+H+WLR+PAGRVEIQ+RT LQS WA+
Sbjct 127 YLAGRFESAF-SDMGASVNVRDYRQDTQQGYRAIHLWLRMPAGRVEIQLRTSLQSRWASL 185
Query 175 YELLADAYGRGIRYDERPE 193
E L D GR IRY+E E
Sbjct 186 NEFLGDKVGRSIRYEEPQE 204
>gi|227832425|ref|YP_002834132.1| hypothetical protein cauri_0597 [Corynebacterium aurimucosum
ATCC 700975]
gi|227453441|gb|ACP32194.1| hypothetical protein cauri_0597 [Corynebacterium aurimucosum
ATCC 700975]
Length=279
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/211 (38%), Positives = 112/211 (54%), Gaps = 26/211 (12%)
Query 14 HSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLA-----------AEVQDRI 62
H +S V R+G ALR+G VD + + + L A++ +R+
Sbjct 6 HKPTTFSKRQVHRIGSALRNG--EAVDEERFGLFLDQQSALCDAIIQKAGQTMAQLDNRL 63
Query 63 EGRSWSASE-----LLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQT 117
S S E + SR K++DTL KL R P L IQD++GVR+D D+ L EQ+
Sbjct 64 TLSSDSIVEPDSDTYFLGSRVKTRDTLREKLSRMPSFPLENIQDVSGVRLDLDVTLKEQS 123
Query 118 RLAREIADHF---GADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANF 174
LA ++ GA + + D+R+ PH+GYRAVH+ + AGR EIQ+RT LQS WAN
Sbjct 124 ILAELLSRDLMKAGARKVELRDMREEPHSGYRAVHLHVMSEAGRAEIQLRTALQSQWANL 183
Query 175 YELLADAYGRGIRYDERPEQLAAGVVPAQLQ 205
YE+ D YGR IRY E G +PA+ +
Sbjct 184 YEMAGDLYGREIRYLE-----FGGKIPAEFE 209
>gi|262183713|ref|ZP_06043134.1| hypothetical protein CaurA7_06968 [Corynebacterium aurimucosum
ATCC 700975]
Length=313
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/211 (38%), Positives = 112/211 (54%), Gaps = 26/211 (12%)
Query 14 HSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLA-----------AEVQDRI 62
H +S V R+G ALR+G VD + + + L A++ +R+
Sbjct 40 HKPTTFSKRQVHRIGSALRNG--EAVDEERFGLFLDQQSALCDAIIQKAGQTMAQLDNRL 97
Query 63 EGRSWSASE-----LLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQT 117
S S E + SR K++DTL KL R P L IQD++GVR+D D+ L EQ+
Sbjct 98 TLSSDSIVEPDSDTYFLGSRVKTRDTLREKLSRMPSFPLENIQDVSGVRLDLDVTLKEQS 157
Query 118 RLAREIADHF---GADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANF 174
LA ++ GA + + D+R+ PH+GYRAVH+ + AGR EIQ+RT LQS WAN
Sbjct 158 ILAELLSRDLMKAGARKVELRDMREEPHSGYRAVHLHVMSEAGRAEIQLRTALQSQWANL 217
Query 175 YELLADAYGRGIRYDERPEQLAAGVVPAQLQ 205
YE+ D YGR IRY E G +PA+ +
Sbjct 218 YEMAGDLYGREIRYLE-----FGGKIPAEFE 243
>gi|225020776|ref|ZP_03709968.1| hypothetical protein CORMATOL_00784 [Corynebacterium matruchotii
ATCC 33806]
gi|305679883|ref|ZP_07402693.1| RelA/SpoT domain protein [Corynebacterium matruchotii ATCC 14266]
gi|224946478|gb|EEG27687.1| hypothetical protein CORMATOL_00784 [Corynebacterium matruchotii
ATCC 33806]
gi|305660503|gb|EFM50000.1| RelA/SpoT domain protein [Corynebacterium matruchotii ATCC 14266]
Length=268
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/162 (44%), Positives = 97/162 (60%), Gaps = 5/162 (3%)
Query 73 LVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHF---GA 129
+V+ R K+ +L KLRR L IQD+AG R+D D+ L +Q R+A E+ D F GA
Sbjct 64 MVSGRPKTIISLKEKLRRMRETPLERIQDVAGARLDCDVTLTQQRRIADELCDLFTECGA 123
Query 130 DQPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYD 189
+ + DLRD H+GYRA+H+ LR PAG E+Q+RT LQS WAN YE AD +GR IRY
Sbjct 124 TRVDLIDLRDGSHSGYRAIHLHLRFPAGFAEVQVRTALQSHWANVYESAADIFGRQIRY- 182
Query 190 ERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEI 231
E + PA+ +++V ++ SA + E E C+ I
Sbjct 183 LHEENCQVLLSPAE-KKIVKLLHGLSAHTSQVEKERDECSYI 223
>gi|331695000|ref|YP_004331239.1| RelA/SpoT domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326949689|gb|AEA23386.1| RelA/SpoT domain protein [Pseudonocardia dioxanivorans CB1190]
Length=368
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/155 (39%), Positives = 79/155 (51%), Gaps = 13/155 (8%)
Query 75 TSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHF--GADQP 132
T+R K+ TL+ KL R +QL I D+AG RI D +Q + + I F QP
Sbjct 57 TARVKTTGTLIDKLIREHGMQLTRINDLAGARIVIDGSRLDQDQAVQNICSAFLDCEKQP 116
Query 133 AIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDERP 192
+ D R P GYRAVHV + VEIQ+RT LQ WA +E LAD +GR IRY E P
Sbjct 117 VVLDRRTQPSFGYRAVHVIVYPEGFPVEIQVRTDLQDAWAQIFERLADQWGRRIRYGEAP 176
Query 193 EQLAAGVVPA-----------QLQELVGVMQDASA 216
+ A +P +L E++ ++D A
Sbjct 177 DPGQAVRIPMHTKAYILGVFYRLSEVIDSIEDGEA 211
>gi|227488296|ref|ZP_03918612.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227542910|ref|ZP_03972959.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227091740|gb|EEI27052.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227181313|gb|EEI62285.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=230
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/121 (40%), Positives = 72/121 (60%), Gaps = 5/121 (4%)
Query 75 TSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHF---GADQ 131
+R K+ T+ K++R+ ++QL+ + D GVR++ D L + +A I D GA +
Sbjct 4 NTRVKTGLTIADKIKRQ-HIQLSNMFDFVGVRLEWDCYLSDLMSMAEHICDELEPLGA-K 61
Query 132 PAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDER 191
I D R+ GYRAVH + AGR+E+Q+RT+ QS WAN +E+L D GR IRY +
Sbjct 62 VEIKDYREKSQHGYRAVHCVITSRAGRIEVQLRTLFQSRWANAFEILGDIAGRSIRYQDD 121
Query 192 P 192
P
Sbjct 122 P 122
>gi|227488312|ref|ZP_03918628.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091722|gb|EEI27034.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
Length=184
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/93 (48%), Positives = 57/93 (62%), Gaps = 4/93 (4%)
Query 119 LAREIADHFGAD--QPAIHDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYE 176
+A I + GA+ + I D R+ GYRAVH +R PAG VE+Q+RT+LQ+ WAN YE
Sbjct 1 MAYSIEEFLGAEDVEVLIRDYREDAQHGYRAVHTIIRSPAGIVEVQLRTLLQARWANAYE 60
Query 177 LLADAYGRGIRYD--ERPEQLAAGVVPAQLQEL 207
+LAD GR IRY E E GVV + LQ +
Sbjct 61 MLADVMGRKIRYQEIELSEDEPLGVVYSNLQRI 93
>gi|344044996|gb|EGV40670.1| hypothetical protein CgS9114_06720 [Corynebacterium glutamicum
S9114]
Length=155
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/148 (37%), Positives = 78/148 (53%), Gaps = 4/148 (2%)
Query 73 LVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQP 132
+ +SR K++DT++ KL R L IQD AG R D D Q +A ++ F
Sbjct 1 MYSSRIKNEDTIVEKLSRLS-TNLARIQDFAGGRFDIDCSPATQILVADDLVAVFEELGC 59
Query 133 AI--HDLRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRYDE 190
++ + + GYR +H+ + AGRVE+QIR+ LQ+ WAN +ELLAD GR IRY
Sbjct 60 SVVKKEYLETSQFGYRGIHLHITGVAGRVELQIRSKLQAKWANTFELLADLAGREIRYGH 119
Query 191 RPEQLAAGVVPAQLQELV-GVMQDASAD 217
E + L EL G+ Q A ++
Sbjct 120 LHESELVNYLVHSLHELSDGIYQLAVSE 147
>gi|258592812|emb|CBE69121.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
Length=240
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/112 (42%), Positives = 66/112 (59%), Gaps = 6/112 (5%)
Query 78 AKSQDTLLAKLRRRPYLQLNTIQDIAGVRID-ADLLLGEQTRLAREIADHFGADQPAIHD 136
AKS +L+ KLRR ++L+ +QDIAG R+ AD+ EQ +A +A F ++ D
Sbjct 60 AKSTGSLIEKLRRES-IRLSQVQDIAGCRVVVADI--TEQESIA--VALLFMWPGASVID 114
Query 137 LRDHPHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRGIRY 188
R P GYRAVH+ + VEIQ+RT+LQ LWA E L+D + I+Y
Sbjct 115 RRADPSHGYRAVHIIAKTSGKLVEIQVRTLLQHLWAELSEKLSDVFDPDIKY 166
>gi|311067651|ref|YP_003972574.1| (p)ppGpp synthetase [Bacillus atrophaeus 1942]
gi|310868168|gb|ADP31643.1| (p)ppGpp synthetase [Bacillus atrophaeus 1942]
Length=211
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/178 (29%), Positives = 84/178 (48%), Gaps = 32/178 (17%)
Query 73 LVTSRAKSQDTLLAKLRRR--PYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 130
VT R K ++L K RR+ P ++ T+QDIAG+RI + + ++ +++ F
Sbjct 42 FVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQFV--DDIQMVKDML--FARK 97
Query 131 QPAIHDLRD----HPHAGYRAVHVW----LRLPAGR----VEIQIRTILQSLWANFYELL 178
+ D RD H +GYR+ H+ L+ PAG VEIQ+RT+ + WA L
Sbjct 98 DFTVVDKRDYIAEHKESGYRSYHLVVLYPLQTPAGEKHILVEIQVRTLAMNFWATIEHSL 157
Query 179 ADAYGRGIRYDERPEQL---------AAGVVPAQLQELVGVMQDASADLAMHEAEWQH 227
Y I PE++ AA + ++ E+ G +Q+A A + + +H
Sbjct 158 NYKYSGNI-----PEKVKLRLQRASEAASQLDEEMSEIRGEIQEAQAAFSRKKKGSEH 210
>gi|302520648|ref|ZP_07272990.1| RelA/SpoT domain-containing protein [Streptomyces sp. SPB78]
gi|302429543|gb|EFL01359.1| RelA/SpoT domain-containing protein [Streptomyces sp. SPB78]
Length=340
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/189 (28%), Positives = 82/189 (44%), Gaps = 17/189 (8%)
Query 17 PPWSNNAVRRLGVALRDGVDPPVDCPSYAEVM----LWHADLAAEVQDRIEGRSWSAS-E 71
P SN V+R + G P + +V+ L HA V + R+ +
Sbjct 3 PENSNKRVQRASRTIGKGTGTPEEIREARDVLSNYRLAHAFPLNAVTVTVRQRALEVNPN 62
Query 72 LLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLL--LGEQTRLAREIADHFGA 129
+V R K T+L KL+R P + + T+QD+ G R+ D + + E + E+
Sbjct 63 AVVAERRKRLPTILDKLKRHPTMSVTTMQDLGGCRVVFDTVAEVNELINVLVELPRSKNR 122
Query 130 DQPAIHDLRDHP---HAGYRAVHVWLRLPAG-------RVEIQIRTILQSLWANFYELLA 179
+ LRD P +GYR VH+ A R+E+Q+RT+LQ WA E +
Sbjct 123 VKRVYDYLRDDPGPRDSGYRGVHLVYEYGASKKEYHGLRIELQVRTLLQHAWATAVETMD 182
Query 180 DAYGRGIRY 188
G ++Y
Sbjct 183 LFSGSELKY 191
>gi|221322524|ref|ZP_03603818.1| hypothetical protein BsubsS_06392 [Bacillus subtilis subsp. subtilis
str. SMY]
Length=192
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/170 (30%), Positives = 80/170 (48%), Gaps = 32/170 (18%)
Query 73 LVTSRAKSQDTLLAKLRRR--PYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 130
VT R K ++L K RR+ P ++ T+QDIAG+RI + + ++ +E+ F
Sbjct 23 FVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQFV--DDIQIVKEML--FARK 78
Query 131 QPAIHDLRD----HPHAGYRAVHVWLRLP----AGR----VEIQIRTILQSLWANFYELL 178
+ D RD H +GYR+ H+ + P +G VEIQIRT+ + WA L
Sbjct 79 DFTVVDQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSL 138
Query 179 ADAYGRGIRYDERPEQL---------AAGVVPAQLQELVGVMQDASADLA 219
Y I PE++ AA + ++ E+ G +Q+A A +
Sbjct 139 NYKYSGNI-----PEKVKLRLQRASEAASRLDEEMSEIRGEVQEAQAAFS 183
>gi|16078225|ref|NP_389042.1| (p)ppGpp synthetase [Bacillus subtilis subsp. subtilis str. 168]
gi|221309002|ref|ZP_03590849.1| hypothetical protein Bsubs1_06416 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221313327|ref|ZP_03595132.1| hypothetical protein BsubsN3_06342 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318251|ref|ZP_03599545.1| hypothetical protein BsubsJ_06286 [Bacillus subtilis subsp. subtilis
str. JH642]
gi|321314891|ref|YP_004207178.1| (p)ppGpp synthetase [Bacillus subtilis BSn5]
gi|81341890|sp|O31611.1|YJBM_BACSU RecName: Full=GTP pyrophosphokinase yjbM; AltName: Full=(p)ppGpp
synthase yjbM; AltName: Full=Small alarmone synthase 1;
Short=SAS 1
gi|2633514|emb|CAB13017.1| (p)ppGpp synthetase [Bacillus subtilis subsp. subtilis str. 168]
gi|320021165|gb|ADV96151.1| (p)ppGpp synthetase [Bacillus subtilis BSn5]
Length=211
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/170 (30%), Positives = 80/170 (48%), Gaps = 32/170 (18%)
Query 73 LVTSRAKSQDTLLAKLRRR--PYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 130
VT R K ++L K RR+ P ++ T+QDIAG+RI + + ++ +E+ F
Sbjct 42 FVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQFV--DDIQIVKEML--FARK 97
Query 131 QPAIHDLRD----HPHAGYRAVHVWLRLP----AGR----VEIQIRTILQSLWANFYELL 178
+ D RD H +GYR+ H+ + P +G VEIQIRT+ + WA L
Sbjct 98 DFTVVDQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSL 157
Query 179 ADAYGRGIRYDERPEQL---------AAGVVPAQLQELVGVMQDASADLA 219
Y I PE++ AA + ++ E+ G +Q+A A +
Sbjct 158 NYKYSGNI-----PEKVKLRLQRASEAASRLDEEMSEIRGEVQEAQAAFS 202
>gi|291483640|dbj|BAI84715.1| ppGpp synthetase [Bacillus subtilis subsp. natto BEST195]
Length=212
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/170 (30%), Positives = 80/170 (48%), Gaps = 32/170 (18%)
Query 73 LVTSRAKSQDTLLAKLRRR--PYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 130
VT R K ++L K RR+ P ++ T+QDIAG+RI + + ++ +E+ F
Sbjct 43 FVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQFV--DDIQIVKEML--FARK 98
Query 131 QPAIHDLRD----HPHAGYRAVHVWLRLP----AGR----VEIQIRTILQSLWANFYELL 178
+ D RD H +GYR+ H+ + P +G VEIQIRT+ + WA L
Sbjct 99 DFTVVDQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSL 158
Query 179 ADAYGRGIRYDERPEQL---------AAGVVPAQLQELVGVMQDASADLA 219
Y I PE++ AA + ++ E+ G +Q+A A +
Sbjct 159 NYKYSGNI-----PEKVKLRLQRASEAASRLDEEMSEIRGEVQEAQAAFS 203
>gi|308173125|ref|YP_003919830.1| (p)ppGpp synthetase [Bacillus amyloliquefaciens DSM 7]
gi|307605989|emb|CBI42360.1| (p)ppGpp synthetase [Bacillus amyloliquefaciens DSM 7]
gi|328554033|gb|AEB24525.1| (p)ppGpp synthetase [Bacillus amyloliquefaciens TA208]
gi|328911186|gb|AEB62782.1| (p)ppGpp synthetase [Bacillus amyloliquefaciens LL3]
gi|341828289|gb|AEK89540.1| (p)ppGpp synthetase [Bacillus amyloliquefaciens XH7]
Length=211
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/170 (30%), Positives = 79/170 (47%), Gaps = 32/170 (18%)
Query 73 LVTSRAKSQDTLLAKLRRR--PYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 130
VT R K ++L K RR+ P Q+ T+QDIAG+RI + + ++ + + F
Sbjct 42 FVTGRVKPVASILEKARRKSIPLHQIETMQDIAGLRIMCQFV--DDIQIVKNML--FARK 97
Query 131 QPAIHDLRD----HPHAGYRAVHVWLRLP----AGR----VEIQIRTILQSLWANFYELL 178
+ D RD H +GYR+ H+ + P +G VEIQIRT+ + WA L
Sbjct 98 DFTVVDQRDYIAEHKESGYRSYHLVVLYPLQTASGEKHLLVEIQIRTLAMNFWATIEHSL 157
Query 179 ADAYGRGIRYDERPEQL---------AAGVVPAQLQELVGVMQDASADLA 219
Y I PE++ AA + ++ E+ G +Q+A A +
Sbjct 158 NYKYSGNI-----PEKVKLRLQRASEAASRLDEEMSEIRGEIQEAQAAFS 202
>gi|21225239|ref|NP_631018.1| hypothetical protein SCO6952 [Streptomyces coelicolor A3(2)]
gi|7649538|emb|CAB89013.1| hypothetical protein SC6F7.05c [Streptomyces coelicolor A3(2)]
Length=347
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/189 (27%), Positives = 82/189 (44%), Gaps = 17/189 (8%)
Query 17 PPWSNNAVRRLGVALRDGVDPPVDCPSYAEVM----LWHADLAAEVQDRIEGRSWSAS-E 71
P SN V+R + G P + +V+ L HA V + R+ +
Sbjct 7 PENSNKRVQRASRTIGKGTGTPEEIGEARDVLSNYRLAHAFPLNAVTVTVRQRALDVNPN 66
Query 72 LLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRIDADLL--LGEQTRLAREIADHFGA 129
+V R K T+L KL+R P + + T+QD+ G R+ D + + E + ++
Sbjct 67 AVVAERRKRLPTILDKLKRHPTMSVTTMQDLGGCRVVFDTVAEVEELVSVLVDLPRSKNR 126
Query 130 DQPAIHDLRDHP---HAGYRAVHVWLRLPAG-------RVEIQIRTILQSLWANFYELLA 179
+ + LRD P +GYR VH+ A R+E+Q+RT LQ WA E +
Sbjct 127 VKKVYNYLRDDPGPRDSGYRCVHLVYEYGASKKEYHGLRIELQVRTRLQHAWATAVETMD 186
Query 180 DAYGRGIRY 188
G ++Y
Sbjct 187 LFSGSELKY 195
>gi|226355798|ref|YP_002785538.1| hypothetical protein Deide_09060 [Deinococcus deserti VCD115]
gi|226317788|gb|ACO45784.1| conserved hypothetical protein [Deinococcus deserti VCD115]
Length=359
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/118 (36%), Positives = 59/118 (50%), Gaps = 22/118 (18%)
Query 74 VTSRAKSQDTLLAKLRRRP--YLQLNTIQDIAGVRI----DADLLLGEQTRLAREIADHF 127
+T+R K +L KLRR+P Y L + D+ GVR+ ++D+ L ++R + DHF
Sbjct 41 LTARVKRPASLADKLRRKPGRYRTLEDLTDLVGVRVITYFESDVAL-----ISRLLEDHF 95
Query 128 GADQPAIHD---LRDHPHAGYRAVHVWLRLPAG--------RVEIQIRTILQSLWANF 174
D D + D GY VH LR+P G R E+QIR+ILQ WA
Sbjct 96 EVDWANSVDKGKVHDPDRFGYMGVHYVLRVPPGQGTVLPGLRFEVQIRSILQHAWAEI 153
>gi|56964303|ref|YP_176034.1| hypothetical protein ABC2538 [Bacillus clausii KSM-K16]
gi|56910546|dbj|BAD65073.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length=253
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/143 (30%), Positives = 67/143 (47%), Gaps = 20/143 (13%)
Query 74 VTSRAKSQDTLLAKLRRR--PY---LQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
V +R KS +++ K RR+ P+ + N+IQDIAG+RI L + RL +
Sbjct 55 VKTRLKSPESIFEKARRKNIPFHLHVLKNSIQDIAGIRITCSFL-SDIYRLEEMLRKQSD 113
Query 129 ADQPAIHDLRDHPHA-GYRAVHVWLRLPAGR--------VEIQIRTILQSLWANFYELLA 179
+ D P GYR++H+ +++P VEIQIRTI WA+ +
Sbjct 114 MHVVTVKDYIKKPKENGYRSLHMIVKVPVYTSARKEEVFVEIQIRTIAMDFWASLEHKIF 173
Query 180 DAYGRGIRYDERPEQLAAGVVPA 202
Y + + P+QL + + A
Sbjct 174 YKYNQNV-----PKQLISELTEA 191
>gi|296332582|ref|ZP_06875043.1| (p)ppGpp synthetase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305673863|ref|YP_003865535.1| (p)ppGpp synthetase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296150500|gb|EFG91388.1| (p)ppGpp synthetase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412107|gb|ADM37226.1| (p)ppGpp synthetase [Bacillus subtilis subsp. spizizenii str.
W23]
Length=211
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/170 (29%), Positives = 80/170 (48%), Gaps = 32/170 (18%)
Query 73 LVTSRAKSQDTLLAKLRRR--PYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 130
VT R K ++L K RR+ P ++ T+QDIAG+RI + + ++ +++ F
Sbjct 42 FVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQFV--DDIQIVKDML--FARK 97
Query 131 QPAIHDLRD----HPHAGYRAVHVWLRLP----AGR----VEIQIRTILQSLWANFYELL 178
+ D RD H +GYR+ H+ + P +G VEIQIRT+ + WA L
Sbjct 98 DFTVVDQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSL 157
Query 179 ADAYGRGIRYDERPEQL---------AAGVVPAQLQELVGVMQDASADLA 219
Y I PE++ AA + ++ E+ G +Q+A A +
Sbjct 158 NYKYSGNI-----PEKVKLRLQRASEAASRLDEEMSEIRGEVQEAQAAFS 202
>gi|240169334|ref|ZP_04747993.1| RelA/SpoT domain-containing protein [Mycobacterium kansasii ATCC
12478]
Length=217
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/126 (32%), Positives = 61/126 (49%), Gaps = 10/126 (7%)
Query 66 SWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRI---DADLLLGEQTRLARE 122
+ S++ V+ R + T++ KLRR P + L + DI G R D D + Q+R A
Sbjct 46 TMGCSQIEVSQRLERIPTIIDKLRREPGMNLGRMADIGGCRAVLRDVDEVRRVQSRYA-- 103
Query 123 IADHFGADQPAIHDLRDHPHA-GYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADA 181
A D + P + GYRAVHV +R +E+Q+RT +Q WA E +
Sbjct 104 ----GAAVTVRTRDYVEQPKSDGYRAVHVIVRYHGRLIEVQLRTQVQHEWAYTVESVTSR 159
Query 182 YGRGIR 187
+G I+
Sbjct 160 FGLDIK 165
>gi|303327180|ref|ZP_07357622.1| RelA/SpoT [Desulfovibrio sp. 3_1_syn3]
gi|302863168|gb|EFL86100.1| RelA/SpoT [Desulfovibrio sp. 3_1_syn3]
Length=424
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/151 (29%), Positives = 71/151 (48%), Gaps = 17/151 (11%)
Query 74 VTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVRI------DADLLLGEQTRLAREIADHF 127
+ R K + ++ KL+R ++L +QDI G+RI D + L + L R+I +
Sbjct 64 IAQRLKRKPQIIRKLKRLS-VRLTQLQDIGGLRIIVDTNKDVNDLF---SFLKRKIEQNE 119
Query 128 GADQPAIHDLRDH--PHAGYRAVHVWLRLPAGRVEIQIRTILQSLWANFYELLADAYGRG 185
I D RDH GYRA+HV L + ++E+QIR+ +Q WA E + YG
Sbjct 120 HIHIHRITDYRDHGRDDTGYRALHVILSISGYKLELQIRSKIQHYWAEGIERTSIIYGYY 179
Query 186 IRYDERPEQLAAGVVPAQLQELVGVMQDASA 216
++ E + +V + L + + A
Sbjct 180 LK-----ESEGSNIVLDYFKNLAKIFNEIEA 205
>gi|229916036|ref|YP_002884682.1| RelA/SpoT domain protein [Exiguobacterium sp. AT1b]
gi|229467465|gb|ACQ69237.1| RelA/SpoT domain protein [Exiguobacterium sp. AT1b]
Length=352
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/117 (35%), Positives = 57/117 (49%), Gaps = 19/117 (16%)
Query 74 VTSRAKSQDTLLAKLRRRPYL--QLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQ 131
+ +RAK D+L AKL R+PY L +QD+AG+RI + +A+ + D F D+
Sbjct 45 IVARAKEADSLYAKLSRKPYQYRSLRDVQDLAGIRI-VTYFHDDVRAVAQILEDEFTIDR 103
Query 132 PAIHD---LRDHPHAGYRAVHVWLRLPAGRV-------------EIQIRTILQSLWA 172
D L D GY +VH + L R+ EIQ+R+ILQ WA
Sbjct 104 EQSIDKSTLLDANEFGYLSVHYVVELSEKRLALGEYRRFAEKEAEIQVRSILQHAWA 160
>gi|238923442|ref|YP_002936958.1| GTP pyrophosphokinase [Eubacterium rectale ATCC 33656]
gi|238875117|gb|ACR74824.1| GTP pyrophosphokinase [Eubacterium rectale ATCC 33656]
gi|291525523|emb|CBK91110.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale
DSM 17629]
Length=224
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/142 (29%), Positives = 67/142 (48%), Gaps = 16/142 (11%)
Query 74 VTSRAKSQDTLLAKLRRRPYLQ-----LNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
+ SR K+ ++++ KL++ Y + ++DIAG+RI + RLA I
Sbjct 49 IKSRIKTPESIVKKLKKGGYESTIENMVTYVKDIAGIRIVCSFT-SDIYRLAEMIGRQND 107
Query 129 ADQPAIHDLRDHPHA-GYRAVHVWLRLPA--------GRVEIQIRTILQSLWANF-YELL 178
++ D HP A GY++ H+ + +P +VEIQIRTI WA+ +++
Sbjct 108 LTVISVKDYMKHPKASGYKSYHMIVSVPIFLSNKVVDTKVEIQIRTIAMDFWASLEHKIY 167
Query 179 ADAYGRGIRYDERPEQLAAGVV 200
G Y R + AG+V
Sbjct 168 YKFEGNAPEYISRDLRECAGIV 189
>gi|291528369|emb|CBK93955.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale
M104/1]
Length=224
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/142 (29%), Positives = 67/142 (48%), Gaps = 16/142 (11%)
Query 74 VTSRAKSQDTLLAKLRRRPYLQ-----LNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
+ SR K+ ++++ KL++ Y + ++DIAG+RI + RLA I
Sbjct 49 IKSRIKTPESIVKKLKKGGYESTIENMVTYVKDIAGIRIVCSFT-SDIYRLAEMIGRQND 107
Query 129 ADQPAIHDLRDHPHA-GYRAVHVWLRLPA--------GRVEIQIRTILQSLWANF-YELL 178
++ D HP A GY++ H+ + +P +VEIQIRTI WA+ +++
Sbjct 108 LTVISVKDYMKHPKASGYKSYHMIVSVPIFLSNKVEDTKVEIQIRTIAMDFWASLEHKIY 167
Query 179 ADAYGRGIRYDERPEQLAAGVV 200
G Y R + AG+V
Sbjct 168 YKFEGNAPEYISRDLRECAGIV 189
>gi|296129052|ref|YP_003636302.1| RelA/SpoT domain protein [Cellulomonas flavigena DSM 20109]
gi|296020867|gb|ADG74103.1| RelA/SpoT domain protein [Cellulomonas flavigena DSM 20109]
Length=239
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/164 (32%), Positives = 72/164 (44%), Gaps = 15/164 (9%)
Query 74 VTSRAKSQDTLLAKLRRR-----PYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
V+SR KS D++L K R P I+DIAG+RI + R+A +A
Sbjct 68 VSSRLKSMDSILEKAGRYGCATDPDTIRERIRDIAGIRITCSFE-SDAYRVADMLAQQPD 126
Query 129 ADQPAIHDLRDHPHA-GYRAVHVWLRLPAG--------RVEIQIRTILQSLWANFYELLA 179
+ D HP GYR++H+ +R+P VEIQIRTI WA+ L
Sbjct 127 VEVVQCKDYIAHPKGNGYRSLHLIVRIPVFLSDRTEHVFVEIQIRTIAMDFWASVEHKLF 186
Query 180 DAYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEA 223
Y + R E L A A+L + +++ DL EA
Sbjct 187 YKYDGAVPDHLRSELLDAARTAAELDARMSGLREELHDLGDREA 230
>gi|169334249|ref|ZP_02861442.1| hypothetical protein ANASTE_00647 [Anaerofustis stercorihominis
DSM 17244]
gi|169258966|gb|EDS72932.1| hypothetical protein ANASTE_00647 [Anaerofustis stercorihominis
DSM 17244]
Length=228
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/157 (30%), Positives = 71/157 (46%), Gaps = 24/157 (15%)
Query 40 DCPSYAEVMLWHADLAAEVQDRIE--------GRSWSASELLVTSRAKSQDTLLAKLRR- 90
D Y E M+ ++ EV+ ++E R+ S E + SR K +++ AKL
Sbjct 28 DSEEYKEAMMKYSCAIKEVKTKLEVLNEELAVKRANSPIEF-IKSRLKKPESIAAKLENL 86
Query 91 --RPYLQ--LNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLRDHPH-AGY 145
+Q ++ + DIAG+RI L + LA+ IA + A+ D P GY
Sbjct 87 GLEVSVQSAMDNLNDIAGIRIVCSFL-DDIYALAKMIAKQDDINVIAVKDYIKTPKPNGY 145
Query 146 RAVHVWLRLPAG--------RVEIQIRTILQSLWANF 174
R+ H+ + +P RVEIQIRTI WA
Sbjct 146 RSYHMIVEIPVFFSDKKQFLRVEIQIRTIAMDFWATL 182
>gi|331267103|ref|YP_004326733.1| hypothetical protein SOR_1745 [Streptococcus oralis Uo5]
gi|326683775|emb|CBZ01393.1| hypothetical protein SOR_1745 [Streptococcus oralis Uo5]
Length=351
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/149 (27%), Positives = 69/149 (47%), Gaps = 28/149 (18%)
Query 40 DCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKSQDTLLAKLRRRPYLQLNTI 99
DC +Y E V++ I+ +S + E++ R K++++L K++R+ Y L I
Sbjct 22 DCLNYVE---------NTVKNIIKSQSINVHEII--GRVKTEESLSGKVKRKDYSNLAEI 70
Query 100 QDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLR---DHPHAGYRAVH------- 149
D+ G+RI + ++A I+ F D D R D GY ++H
Sbjct 71 TDLCGIRI-ITYFSDDVDKIAELISQEFEVDVENTIDKRKSEDPTKFGYISLHYVVSLKE 129
Query 150 ------VWLRLPAGRVEIQIRTILQSLWA 172
++ + ++EIQIRT++Q WA
Sbjct 130 ENSSPILYSKFKNIKLEIQIRTVMQHAWA 158
>gi|336430519|ref|ZP_08610465.1| hypothetical protein HMPREF0994_06471 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336017851|gb|EGN47606.1| hypothetical protein HMPREF0994_06471 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length=214
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/115 (29%), Positives = 56/115 (49%), Gaps = 15/115 (13%)
Query 74 VTSRAKSQDTLLAKLRRRPY-----LQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
+ SR K+ ++++ KL+R Y + I DIAG+R+ + R+A I +
Sbjct 51 IKSRMKTSESIVKKLKRYGYESTIENMVKYINDIAGIRVICSFT-SDIYRIADMIRNQND 109
Query 129 ADQPAIHDLRDHPHA-GYRAVHVWLRLPAG--------RVEIQIRTILQSLWANF 174
++ D HP A GY++ H+ + +P +VEIQIRT+ WA+
Sbjct 110 IKVISVKDYMKHPKASGYKSYHMLVTVPVFLSDRIVEVKVEIQIRTVAMDFWASL 164
>gi|336433052|ref|ZP_08612882.1| hypothetical protein HMPREF0991_02001 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336017722|gb|EGN47480.1| hypothetical protein HMPREF0991_02001 [Lachnospiraceae bacterium
2_1_58FAA]
Length=243
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/127 (31%), Positives = 60/127 (48%), Gaps = 20/127 (15%)
Query 74 VTSRAKSQDTLLAKLRRRPYL-----QLNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
+ +R K+ ++++ KL+R Y L I DIAGVR+ + RLA I +
Sbjct 51 IKTRIKTPESIVKKLKRYGYETSIENMLRYINDIAGVRLICSFT-SDIYRLAEMIGNQSD 109
Query 129 ADQPAIHDLRDHP-HAGYRAVHVWLRLPA--------GRVEIQIRTILQSLWAN-----F 174
AI D P +GY++ H+ + +P +VEIQIRTI WA+ +
Sbjct 110 LKVLAIKDYIKKPKESGYKSYHMLVSVPIFLSDSVVDTKVEIQIRTIAMDFWASLEHKIY 169
Query 175 YELLADA 181
Y+ DA
Sbjct 170 YKFEGDA 176
>gi|154503133|ref|ZP_02040193.1| hypothetical protein RUMGNA_00957 [Ruminococcus gnavus ATCC 29149]
gi|153796127|gb|EDN78547.1| hypothetical protein RUMGNA_00957 [Ruminococcus gnavus ATCC 29149]
Length=243
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/127 (31%), Positives = 60/127 (48%), Gaps = 20/127 (15%)
Query 74 VTSRAKSQDTLLAKLRRRPYL-----QLNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
+ +R K+ ++++ KL+R Y L I DIAGVR+ + RLA I +
Sbjct 51 IKTRIKTPESIVKKLKRYGYETSIENMLRYINDIAGVRLICSFT-SDIYRLAEMIGNQSD 109
Query 129 ADQPAIHDLRDHP-HAGYRAVHVWLRLPA--------GRVEIQIRTILQSLWAN-----F 174
AI D P +GY++ H+ + +P +VEIQIRTI WA+ +
Sbjct 110 LKVLAIKDYIKKPKESGYKSYHMLVSVPIFLSDSVVDTKVEIQIRTIAMDFWASLEHKIY 169
Query 175 YELLADA 181
Y+ DA
Sbjct 170 YKFEGDA 176
>gi|153854942|ref|ZP_01996155.1| hypothetical protein DORLON_02161 [Dorea longicatena DSM 13814]
gi|149752439|gb|EDM62370.1| hypothetical protein DORLON_02161 [Dorea longicatena DSM 13814]
Length=236
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (30%), Positives = 61/127 (49%), Gaps = 20/127 (15%)
Query 74 VTSRAKSQDTLLAKLRRRPYL-----QLNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
+ +R K+ ++++ KLRR Y + I DIAGVR+ + RLA I +
Sbjct 51 IKTRIKTPESIVKKLRRYGYEISIENMVKYINDIAGVRLICSFT-SDIYRLAEMIGNQSD 109
Query 129 ADQPAIHDLRDHP-HAGYRAVHVWLRLPA--------GRVEIQIRTILQSLWAN-----F 174
+I D +P +GY++ H+ + +P +VEIQIRTI WA+ +
Sbjct 110 LKVLSIKDYIKNPKESGYKSYHMLVSVPIFLSDSVVDTKVEIQIRTIAMDFWASLEHKIY 169
Query 175 YELLADA 181
Y+ DA
Sbjct 170 YKFEGDA 176
>gi|194014827|ref|ZP_03053444.1| conserved protein YjbM [Bacillus pumilus ATCC 7061]
gi|194013853|gb|EDW23418.1| conserved protein YjbM [Bacillus pumilus ATCC 7061]
Length=209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/163 (28%), Positives = 75/163 (47%), Gaps = 28/163 (17%)
Query 73 LVTSRAKSQDTLLAKLRRR--PYLQLNTIQDIAGVRIDADLLLGEQT--RLAREIADHFG 128
VT R K ++L K +R+ P ++ T+QDIAG+RI + Q ++ + D
Sbjct 42 FVTGRVKPVASILEKAKRKNIPMHEIETMQDIAGLRIMCQFVEDIQVVKKMLQSRKDFVV 101
Query 129 ADQPAIHDLRDHPHAGYRAVHVWLRLPAGR--------VEIQIRTILQSLWANFYELLAD 180
D+ + +H +GYR+ H+ + P VEIQIRT+ + WA L
Sbjct 102 VDKRDY--IAEHKESGYRSYHLVVLYPLQTINGEKQLLVEIQIRTLAMNFWATIEHSLNY 159
Query 181 AYGRGIRYDERPEQL---------AAGVVPAQLQELVGVMQDA 214
Y I PE++ AA ++ ++ E+ G +Q+A
Sbjct 160 KYSGNI-----PEKVKLRLQRASEAASLLDDEMSEIRGEIQEA 197
>gi|302337075|ref|YP_003802281.1| RelA/SpoT domain-containing protein [Spirochaeta smaragdinae
DSM 11293]
gi|301634260|gb|ADK79687.1| RelA/SpoT domain protein [Spirochaeta smaragdinae DSM 11293]
Length=398
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/133 (33%), Positives = 68/133 (52%), Gaps = 18/133 (13%)
Query 53 DLAAEVQDRIEGRSWSASELLVTSRAKSQDTLLAKLRRR----PYLQLNT------IQDI 102
DL ++++ ++ A+ V R K+ D+ AKL R+ P L+ IQD+
Sbjct 30 DLELQLKNLLQAEEIKAT---VKGRIKAFDSYYAKLLRKLSSMPMQSLSEQEIDTLIQDL 86
Query 103 AGVRIDADLL--LGEQTRLAREIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRV- 159
GVRI L + + RL R F ++ + + GYR++H+ +RL +G++
Sbjct 87 VGVRILTPFLESVTDIERLVRSRFSVFEVERKG--EEQSFCEFGYRSIHLNIRLDSGQIC 144
Query 160 EIQIRTILQSLWA 172
EIQIRTILQ WA
Sbjct 145 EIQIRTILQDAWA 157
>gi|157691871|ref|YP_001486333.1| hypothetical protein BPUM_1089 [Bacillus pumilus SAFR-032]
gi|157680629|gb|ABV61773.1| hypothetical protein BPUM_1089 [Bacillus pumilus SAFR-032]
Length=209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/163 (28%), Positives = 75/163 (47%), Gaps = 28/163 (17%)
Query 73 LVTSRAKSQDTLLAKLRRR--PYLQLNTIQDIAGVRIDADLLLGEQT--RLAREIADHFG 128
VT R K ++L K +R+ P ++ T+QDIAG+RI + Q ++ + D
Sbjct 42 FVTGRVKPVASILEKAKRKDIPMHEIETMQDIAGLRIMCQFVEDIQVVKKMLQSRKDFVV 101
Query 129 ADQPAIHDLRDHPHAGYRAVHVWLRLPAGR--------VEIQIRTILQSLWANFYELLAD 180
D+ + +H +GYR+ H+ + P VEIQIRT+ + WA L
Sbjct 102 VDKRDY--IAEHKESGYRSYHLVVLYPLQTINGEKQLLVEIQIRTLAMNFWATIEHSLNY 159
Query 181 AYGRGIRYDERPEQL---------AAGVVPAQLQELVGVMQDA 214
Y I PE++ AA ++ ++ E+ G +Q+A
Sbjct 160 KYSGNI-----PEKVKLRLQRASEAASLLDDEMSEIRGEIQEA 197
>gi|51892774|ref|YP_075465.1| putative GTP pyrophosphokinase [Symbiobacterium thermophilum
IAM 14863]
gi|51856463|dbj|BAD40621.1| putative GTP pyrophosphokinase [Symbiobacterium thermophilum
IAM 14863]
Length=404
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/130 (35%), Positives = 56/130 (44%), Gaps = 18/130 (13%)
Query 74 VTSRAKSQDTLLAKLRR--RPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQ 131
+T R KS D L KL R + Y L + D+ GVR+ + + R+ R I HF D
Sbjct 86 ITYRVKSVDALAEKLTRPGKDYESLIEVTDLVGVRVVTNFA-DDVDRVVRVIDRHFEVDL 144
Query 132 PAIHDLRDH-PH-AGYRAVHVWLRLPAG-------------RVEIQIRTILQSLWANFYE 176
D R H PH GY +VH LP R EIQ+R+ILQ WA
Sbjct 145 DHSEDKRPHDPHWFGYSSVHRVCLLPPAVLARPEYARFAGLRCEIQVRSILQHAWAEIEH 204
Query 177 LLADAYGRGI 186
L GI
Sbjct 205 DLGYKVAGGI 214
>gi|88798383|ref|ZP_01113968.1| hypothetical protein MED297_07991 [Reinekea sp. MED297]
gi|88778823|gb|EAR10013.1| hypothetical protein MED297_07991 [Reinekea sp. MED297]
Length=363
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/125 (33%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query 73 LVTSRAKSQDTLLAKLRRRPYLQLNTIQDIAGVR-IDADLLLGEQTRLAREIA--DHFGA 129
+V R K +++++ KL R + L ++ DIAG R I +DL + RL R + +HF
Sbjct 46 IVAKRLKRKESIIYKLVRFKGMSLRSMNDIAGCRVIISDL--KKARRLLRGLKKDEHFQR 103
Query 130 D-QPAIHDLRDHPHA-GYRAVHVWLRLPAG-----RVEIQIRTILQSLWANFYELLADAY 182
+ I+D + P GYR VH+ + VEIQIRT+LQ WA E++
Sbjct 104 EIGYKINDYIEKPQEDGYRGVHIISKFENDEGKLLNVEIQIRTLLQHYWATSVEIIDILT 163
Query 183 GRGIR 187
G+ ++
Sbjct 164 GQNLK 168
>gi|52079663|ref|YP_078454.1| hypothetical protein BL03338 [Bacillus licheniformis ATCC 14580]
gi|52785025|ref|YP_090854.1| YjbM [Bacillus licheniformis ATCC 14580]
gi|319646541|ref|ZP_08000770.1| YjbM protein [Bacillus sp. BT1B_CT2]
gi|52002874|gb|AAU22816.1| conserved protein YjbM [Bacillus licheniformis ATCC 14580]
gi|52347527|gb|AAU40161.1| YjbM [Bacillus licheniformis ATCC 14580]
gi|317391129|gb|EFV71927.1| YjbM protein [Bacillus sp. BT1B_CT2]
Length=211
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (29%), Positives = 76/171 (45%), Gaps = 34/171 (19%)
Query 73 LVTSRAKSQDTLLAKLRRR--PYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGAD 130
VT R K ++L K +R+ P + ++QDIAG+RI E R+ + D A
Sbjct 42 FVTGRVKPVPSILEKAKRKNIPLHNIESMQDIAGLRIMCQFF--EDIRI---VVDMLLAR 96
Query 131 QP-AIHDLRD----HPHAGYRAVHVWLRLPAGR--------VEIQIRTILQSLWANFYEL 177
+ + D RD H +GYR+ H+ + P VEIQIRT+ + WA
Sbjct 97 KDFTVVDKRDYIAEHKESGYRSYHLVVLYPLQTINGEKQILVEIQIRTLAMNFWATIEHS 156
Query 178 LADAYGRGIRYDERPEQL---------AAGVVPAQLQELVGVMQDASADLA 219
L Y I PE++ AA + ++ E+ G +Q+A A +
Sbjct 157 LNYKYSGNI-----PEKVKLRLQRASEAASRLDMEMSEIRGEIQEAQAAFS 202
>gi|313115928|ref|ZP_07801355.1| RelA/SpoT domain protein [Faecalibacterium cf. prausnitzii KLE1255]
gi|310621692|gb|EFQ05220.1| RelA/SpoT domain protein [Faecalibacterium cf. prausnitzii KLE1255]
Length=223
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/120 (33%), Positives = 59/120 (50%), Gaps = 25/120 (20%)
Query 74 VTSRAKSQDTLLAKLRRR------PYLQLNTIQDIAGVRI----DADLLLGEQTRLAREI 123
+ SR KS +++ K+++R P +Q N I DIAGVR+ + D+ LA+ +
Sbjct 68 MKSRLKSPSSIMNKMQKRGLSLDFPTMQAN-IMDIAGVRVICSFEEDVFF-----LAKCL 121
Query 124 ADHFGADQPAIHDLRDHPH-AGYRAVHVWLRLPAGR--------VEIQIRTILQSLWANF 174
D + D HP GYR++H+ +RLP VEIQ+RTI WA+
Sbjct 122 KDQSDIEIITEKDYISHPKPNGYRSLHLTIRLPVFFAEKEIHVPVEIQLRTIAMDFWASL 181
>gi|344327764|gb|EGW39179.1| region found in RelA / SpoT s family protein [Desulfosporosinus
sp. OT]
Length=379
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/119 (33%), Positives = 54/119 (46%), Gaps = 20/119 (16%)
Query 73 LVTSRAKSQDTLLAKLRR--RPYLQ-LNTIQDIAGVRIDADLLLGEQTRLAREIADHFGA 129
++ SR K ++ K++R R Y+ LN I DI G+RI + E + I + F
Sbjct 42 VIQSRTKDVESFSNKIKRKSRKYIDPLNEITDICGIRIIVNYQ-DEVDEIFNMIKEEFEV 100
Query 130 DQPAIHD---LRDHPHAGYRAVHV-------------WLRLPAGRVEIQIRTILQSLWA 172
D+ D L + GYR+VH W +VEIQIRTILQ WA
Sbjct 101 DEVNSIDKGSLLNPNEFGYRSVHYVASLASERKELTEWKAFSNFKVEIQIRTILQHSWA 159
>gi|225569394|ref|ZP_03778419.1| hypothetical protein CLOHYLEM_05478 [Clostridium hylemonae DSM
15053]
gi|225161602|gb|EEG74221.1| hypothetical protein CLOHYLEM_05478 [Clostridium hylemonae DSM
15053]
Length=235
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (30%), Positives = 56/115 (49%), Gaps = 15/115 (13%)
Query 74 VTSRAKSQDTLLAKLRRRPY-----LQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
+ +R K+ ++++ KLRR Y + + DIAGVR+ + RLA I +
Sbjct 51 IKTRVKTPESIVKKLRRYGYETSIENMVKYVNDIAGVRLICSFT-SDIYRLAEMIGNQSD 109
Query 129 ADQPAIHDLRDHP-HAGYRAVHVWLRLPA--------GRVEIQIRTILQSLWANF 174
+I D +P +GY++ H+ + +P +VEIQIRTI WA+
Sbjct 110 LKVLSIKDYIKNPKESGYKSYHMLVSVPIFLSDSVVDTKVEIQIRTIAMDFWASL 164
>gi|166031544|ref|ZP_02234373.1| hypothetical protein DORFOR_01244 [Dorea formicigenerans ATCC
27755]
gi|166028521|gb|EDR47278.1| hypothetical protein DORFOR_01244 [Dorea formicigenerans ATCC
27755]
Length=225
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (30%), Positives = 56/115 (49%), Gaps = 15/115 (13%)
Query 74 VTSRAKSQDTLLAKLRRRPYL-----QLNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
+ +R K+ ++++ KL+R Y + I DIAGVR+ + RLA I +
Sbjct 51 IKTRVKTAESIVKKLKRYGYETSIENMVKYINDIAGVRLICSFT-SDIYRLAEMIGNQSD 109
Query 129 ADQPAIHDLRDHP-HAGYRAVHVWLRLPA--------GRVEIQIRTILQSLWANF 174
+I D +P +GY++ H+ + +P +VEIQIRTI WA+
Sbjct 110 LKVLSIKDYIKNPKESGYKSYHMLVSVPIFLSDSVVDTKVEIQIRTIAMDFWASL 164
>gi|226322443|ref|ZP_03797961.1| hypothetical protein COPCOM_00214 [Coprococcus comes ATCC 27758]
gi|225209165|gb|EEG91519.1| hypothetical protein COPCOM_00214 [Coprococcus comes ATCC 27758]
Length=284
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/144 (28%), Positives = 68/144 (48%), Gaps = 16/144 (11%)
Query 74 VTSRAKSQDTLLAKLRRRPYL-----QLNTIQDIAGVRIDADLLLGEQTRLAREIADHFG 128
+ +R KS ++++ KL+R Y + + DIAGVR+ + RLA I +
Sbjct 100 IKTRIKSAESIVKKLKRYGYETSIENMVRYVNDIAGVRLICSFT-SDIYRLAEMIGNQSD 158
Query 129 ADQPAIHDLRDHP-HAGYRAVHVWLRLPA--------GRVEIQIRTILQSLWANF-YELL 178
+I D +P +GY++ H+ + +P +VEIQIRTI WA+ +++
Sbjct 159 LKVLSIKDYIKNPKESGYKSYHMLVSVPIFLSDSVVDTKVEIQIRTIAMDFWASLEHKIY 218
Query 179 ADAYGRGIRYDERPEQLAAGVVPA 202
G+ Y R + A +V A
Sbjct 219 YKFEGQAPEYISRELKECADMVSA 242
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 426144143792
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40