BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1374c

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57116855|ref|NP_215890.2|  hypothetical protein Rv1374c [Mycob...   311    3e-83
gi|15840832|ref|NP_335869.1|  hypothetical protein MT1418.1 [Myco...   309    1e-82
gi|340626388|ref|YP_004744840.1|  hypothetical protein MCAN_13901...   307    3e-82
gi|296808429|ref|XP_002844553.1|  2-isopropylmalate synthase [Art...  34.7    5.0  


>gi|57116855|ref|NP_215890.2| hypothetical protein Rv1374c [Mycobacterium tuberculosis H37Rv]
 gi|148661165|ref|YP_001282688.1| hypothetical protein MRA_1383A [Mycobacterium tuberculosis H37Ra]
 gi|167968426|ref|ZP_02550703.1| hypothetical protein MtubH3_10476 [Mycobacterium tuberculosis 
H37Ra]
 gi|308399939|ref|ZP_07669396.1| hypothetical protein TMLG_03060 [Mycobacterium tuberculosis SUMu012]
 gi|38490261|emb|CAB02652.2| HYPOTHETICAL PROTEIN Rv1374c [Mycobacterium tuberculosis H37Rv]
 gi|148505317|gb|ABQ73126.1| hypothetical protein MRA_1383A [Mycobacterium tuberculosis H37Ra]
 gi|308366410|gb|EFP55261.1| hypothetical protein TMLG_03060 [Mycobacterium tuberculosis SUMu012]
Length=152

 Score =  311 bits (796),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 151/152 (99%), Positives = 152/152 (100%), Gaps = 0/152 (0%)

Query  1    VVTSVADENVASRIASWGTGPAPDPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKI  60
            +VTSVADENVASRIASWGTGPAPDPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKI
Sbjct  1    MVTSVADENVASRIASWGTGPAPDPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKI  60

Query  61   CRVERFTLLEHGFVGHALHRVPCAGLVALVMSACSLAVCREVGNYAQRRVGRFAFFEQTF  120
            CRVERFTLLEHGFVGHALHRVPCAGLVALVMSACSLAVCREVGNYAQRRVGRFAFFEQTF
Sbjct  61   CRVERFTLLEHGFVGHALHRVPCAGLVALVMSACSLAVCREVGNYAQRRVGRFAFFEQTF  120

Query  121  VRHALTPRCSRTDSKTSYTQLNRICKFPPHWV  152
            VRHALTPRCSRTDSKTSYTQLNRICKFPPHWV
Sbjct  121  VRHALTPRCSRTDSKTSYTQLNRICKFPPHWV  152


>gi|15840832|ref|NP_335869.1| hypothetical protein MT1418.1 [Mycobacterium tuberculosis CDC1551]
 gi|31792568|ref|NP_855061.1| hypothetical protein Mb1409c [Mycobacterium bovis AF2122/97]
 gi|121637304|ref|YP_977527.1| hypothetical protein BCG_1435c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 41 more sequence titles
 Length=152

 Score =  309 bits (791),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 150/152 (99%), Positives = 151/152 (99%), Gaps = 0/152 (0%)

Query  1    VVTSVADENVASRIASWGTGPAPDPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKI  60
            +VTSVADENVASRIASWGTGPAPDPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKI
Sbjct  1    MVTSVADENVASRIASWGTGPAPDPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKI  60

Query  61   CRVERFTLLEHGFVGHALHRVPCAGLVALVMSACSLAVCREVGNYAQRRVGRFAFFEQTF  120
            CRVERFTLLEHGFVGHALHRVPCAGLVALVMSACSLAVCREVGNYAQRRVGRFAFFEQTF
Sbjct  61   CRVERFTLLEHGFVGHALHRVPCAGLVALVMSACSLAVCREVGNYAQRRVGRFAFFEQTF  120

Query  121  VRHALTPRCSRTDSKTSYTQLNRICKFPPHWV  152
            VRHALTPRCSRTDSK SYTQLNRICKFPPHWV
Sbjct  121  VRHALTPRCSRTDSKASYTQLNRICKFPPHWV  152


>gi|340626388|ref|YP_004744840.1| hypothetical protein MCAN_13901 [Mycobacterium canettii CIPT 
140010059]
 gi|340004578|emb|CCC43722.1| hypothetical protein MCAN_13901 [Mycobacterium canettii CIPT 
140010059]
Length=152

 Score =  307 bits (787),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 149/152 (99%), Positives = 150/152 (99%), Gaps = 0/152 (0%)

Query  1    VVTSVADENVASRIASWGTGPAPDPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKI  60
            +VTSV DENVASRIASWGTGPAPDPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKI
Sbjct  1    MVTSVTDENVASRIASWGTGPAPDPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKI  60

Query  61   CRVERFTLLEHGFVGHALHRVPCAGLVALVMSACSLAVCREVGNYAQRRVGRFAFFEQTF  120
            CRVERFTLLEHGFVGHALHRVPCAGLVALVMSACSLAVCREVGNYAQRRVGRFAFFEQTF
Sbjct  61   CRVERFTLLEHGFVGHALHRVPCAGLVALVMSACSLAVCREVGNYAQRRVGRFAFFEQTF  120

Query  121  VRHALTPRCSRTDSKTSYTQLNRICKFPPHWV  152
            VRHALTPRCSRTDSK SYTQLNRICKFPPHWV
Sbjct  121  VRHALTPRCSRTDSKASYTQLNRICKFPPHWV  152


>gi|296808429|ref|XP_002844553.1| 2-isopropylmalate synthase [Arthroderma otae CBS 113480]
 gi|238844036|gb|EEQ33698.1| 2-isopropylmalate synthase [Arthroderma otae CBS 113480]
Length=656

 Score = 34.7 bits (78),  Expect = 5.0, Method: Composition-based stats.
 Identities = 22/89 (25%), Positives = 39/89 (44%), Gaps = 5/89 (5%)

Query  24   DPRLDYAHAHLKGRRGRSPARPNAPIGARSFAVGRKICRVERFTLLEHGFVGHALHRVPC  83
            +PR +    ++   R +SPA P       +  + R+   +     ++HG VG     V  
Sbjct  472  NPRFNLIDYNITADRSQSPAPPTPGKAVNTQNLKRRFTGIIEIDGIQHGIVG-----VGT  526

Query  84   AGLVALVMSACSLAVCREVGNYAQRRVGR  112
              + AL  +  SL +  +V NY +  +GR
Sbjct  527  GAISALAHALHSLGIDLDVVNYTEHAIGR  555



Lambda     K      H
   0.326    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128332939266


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40