BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1386

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840844|ref|NP_335881.1|  PE family protein [Mycobacterium tu...   190    7e-47
gi|254364274|ref|ZP_04980320.1|  PE family protein [Mycobacterium...   189    1e-46
gi|340626400|ref|YP_004744852.1|  PE family protein [Mycobacteriu...   186    8e-46
gi|289745138|ref|ZP_06504516.1|  PE family protein [Mycobacterium...   140    4e-32
gi|15827194|ref|NP_301457.1|  PE-family protein [Mycobacterium le...   137    5e-31
gi|240171484|ref|ZP_04750143.1|  PE domain-containing protein [My...   108    3e-22
gi|118470806|ref|YP_885029.1|  PE family protein [Mycobacterium s...   103    9e-21
gi|108797353|ref|YP_637550.1|  PE-like protein [Mycobacterium sp....   102    1e-20
gi|145220930|ref|YP_001131608.1|  PE domain-containing protein [M...   100    6e-20
gi|15828365|ref|NP_302628.1|  PE-family protein [Mycobacterium le...  99.4    2e-19
gi|296167588|ref|ZP_06849913.1|  PE-family protein [Mycobacterium...  94.4    6e-18
gi|240169093|ref|ZP_04747752.1|  hypothetical protein MkanA1_0725...  92.8    1e-17
gi|118617769|ref|YP_906101.1|  PE family protein [Mycobacterium u...  90.9    5e-17
gi|118467190|ref|YP_883991.1|  PE family protein [Mycobacterium a...  89.7    1e-16
gi|41409879|ref|NP_962715.1|  hypothetical protein MAP3781 [Mycob...  88.6    3e-16
gi|120401439|ref|YP_951268.1|  PE domain-containing protein [Myco...  88.6    3e-16
gi|254818902|ref|ZP_05223903.1|  PE family protein [Mycobacterium...  88.6    3e-16
gi|118619480|ref|YP_907812.1|  PE family protein [Mycobacterium u...  87.8    4e-16
gi|240173309|ref|ZP_04751967.1|  PE family protein [Mycobacterium...  87.4    6e-16
gi|118616921|ref|YP_905253.1|  PE family protein [Mycobacterium u...  85.5    2e-15
gi|169627151|ref|YP_001700800.1|  PE family protein [Mycobacteriu...  84.0    7e-15
gi|15839671|ref|NP_334708.1|  PE family protein [Mycobacterium tu...  84.0    7e-15
gi|240173110|ref|ZP_04751768.1|  PE-family protein [Mycobacterium...  84.0    8e-15
gi|169627767|ref|YP_001701416.1|  PE family protein [Mycobacteriu...  83.2    1e-14
gi|317506395|ref|ZP_07964203.1|  PE family protein [Segniliparus ...  81.3    5e-14
gi|254777309|ref|ZP_05218825.1|  hypothetical protein MaviaA2_219...  81.3    5e-14
gi|240168499|ref|ZP_04747158.1|  PE family protein, PE5 [Mycobact...  80.9    6e-14
gi|342859231|ref|ZP_08715885.1|  hypothetical protein MCOL_10143 ...  80.5    7e-14
gi|240170992|ref|ZP_04749651.1|  hypothetical protein MkanA1_1690...  79.7    1e-13
gi|41406220|ref|NP_959056.1|  hypothetical protein MAP0122 [Mycob...  79.3    2e-13
gi|323718348|gb|EGB27525.1|  PE family protein [Mycobacterium tub...  79.3    2e-13
gi|333988933|ref|YP_004521547.1|  PE family protein PE5 [Mycobact...  79.0    2e-13
gi|254773162|ref|ZP_05214678.1|  PE family protein [Mycobacterium...  77.8    4e-13
gi|342860175|ref|ZP_08716827.1|  PE family protein [Mycobacterium...  77.8    5e-13
gi|340628015|ref|YP_004746467.1|  PE family protein [Mycobacteriu...  76.3    2e-12
gi|308372403|ref|ZP_07428546.2|  putative PE family protein [Myco...  75.9    2e-12
gi|254365653|ref|ZP_04981698.1|  PE family protein [Mycobacterium...  75.9    2e-12
gi|306777325|ref|ZP_07415662.1|  putative PE family protein [Myco...  75.5    2e-12
gi|15842585|ref|NP_337622.1|  PE family protein [Mycobacterium tu...  75.5    2e-12
gi|31794200|ref|NP_856693.1|  PE family protein [Mycobacterium bo...  74.3    5e-12
gi|183983962|ref|YP_001852253.1|  PE-PGRS family protein [Mycobac...  72.8    1e-11
gi|306804804|ref|ZP_07441472.1|  putative PE family protein [Myco...  72.8    2e-11
gi|167966626|ref|ZP_02548903.1|  PE family protein [Mycobacterium...  72.4    2e-11
gi|336460186|gb|EGO39090.1|  PE family protein [Mycobacterium avi...  72.0    2e-11
gi|212596236|gb|ACJ35562.1|  PE1 [Mycobacterium intracellulare AT...  72.0    3e-11
gi|254821558|ref|ZP_05226559.1|  PE family protein [Mycobacterium...  72.0    3e-11
gi|183985227|ref|YP_001853518.1|  PE family protein, PE5_1 [Mycob...  70.1    1e-10
gi|317506269|ref|ZP_07964086.1|  PE family protein [Segniliparus ...  69.3    2e-10
gi|308369801|ref|ZP_07419129.2|  PE family protein [Mycobacterium...  68.6    3e-10
gi|308380551|ref|ZP_07490320.2|  putative PE family protein [Myco...  66.2    1e-09


>gi|15840844|ref|NP_335881.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792580|ref|NP_855073.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116857|ref|YP_177805.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 76 more sequence titles
 Length=102

 Score =  190 bits (482),  Expect = 7e-47, Method: Compositional matrix adjust.
 Identities = 101/102 (99%), Positives = 102/102 (100%), Gaps = 0/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ
Sbjct  1    MTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGGL  102
            HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGGL
Sbjct  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGGL  102


>gi|254364274|ref|ZP_04980320.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134149788|gb|EBA41833.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=102

 Score =  189 bits (479),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 100/102 (99%), Positives = 101/102 (99%), Gaps = 0/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCN VEFSVHGSQ
Sbjct  1    MTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNTVEFSVHGSQ  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGGL  102
            HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGGL
Sbjct  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGGL  102


>gi|340626400|ref|YP_004744852.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004590|emb|CCC43734.1| PE family protein [Mycobacterium canettii CIPT 140010059]
Length=102

 Score =  186 bits (473),  Expect = 8e-46, Method: Compositional matrix adjust.
 Identities = 100/102 (99%), Positives = 101/102 (99%), Gaps = 0/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ
Sbjct  1    MTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGGL  102
            HVAMAAQGVEELGRSGVGVAESGASYAA DALAAASYLSGGL
Sbjct  61   HVAMAAQGVEELGRSGVGVAESGASYAAGDALAAASYLSGGL  102


>gi|289745138|ref|ZP_06504516.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289685666|gb|EFD53154.1| PE family protein [Mycobacterium tuberculosis 02_1987]
Length=73

 Score =  140 bits (354),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  30   AAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQHVAMAAQGVEELGRSGVGVAESGASYAAR  89
            AAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQHVAMAAQGVEELGRSGVGVAESGASYAAR
Sbjct  1    AAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQHVAMAAQGVEELGRSGVGVAESGASYAAR  60

Query  90   DALAAASYLSGGL  102
            DALAAASYLSGGL
Sbjct  61   DALAAASYLSGGL  73


>gi|15827194|ref|NP_301457.1| PE-family protein [Mycobacterium leprae TN]
 gi|221229672|ref|YP_002503088.1| PE-family protein [Mycobacterium leprae Br4923]
 gi|13092742|emb|CAC30046.1| PE-family protein [Mycobacterium leprae]
 gi|219932779|emb|CAR70631.1| PE-family protein [Mycobacterium leprae Br4923]
Length=102

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 73/102 (72%), Positives = 78/102 (77%), Gaps = 0/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TL V+PE L GASA IEA+TA LA  HA AAPFI  VIPPGS SVSV N V F+VHG Q
Sbjct  1    MTLGVIPEGLEGASAVIEALTAHLATVHAEAAPFIMEVIPPGSGSVSVQNQVGFNVHGCQ  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGGL  102
            +VAM A G EELGR GVGVAESG SYA RDA A ASYL GGL
Sbjct  61   YVAMTAHGAEELGRWGVGVAESGVSYALRDAFAVASYLGGGL  102


>gi|240171484|ref|ZP_04750143.1| PE domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=113

 Score =  108 bits (269),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 68/102 (67%), Positives = 77/102 (76%), Gaps = 0/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            VTL VVPE L  ASAAIEA+T RLAAAHAAA P I  V PP +D VSV +AVE  V GS 
Sbjct  12   VTLSVVPEGLIAASAAIEALTTRLAAAHAAAVPLITVVAPPAADPVSVQSAVEAGVRGSA  71

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGGL  102
            H A+AA+G+E+LGRSGV VAES  +YA  DA+AA SYLS GL
Sbjct  72   HAAVAARGLEDLGRSGVAVAESATTYATGDAVAAVSYLSAGL  113


>gi|118470806|ref|YP_885029.1| PE family protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172093|gb|ABK72989.1| pe family protein [Mycobacterium smegmatis str. MC2 155]
Length=103

 Score =  103 bits (257),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 68/99 (69%), Positives = 81/99 (82%), Gaps = 0/99 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE L  AS+A+EA+TARLAAAHAAAAP I+ V+PP +D+VS+  A  FS +G+Q
Sbjct  1   MTLRVVPEGLTAASSAVEALTARLAAAHAAAAPMISTVLPPAADAVSLQTAAGFSANGAQ  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLS  99
             A+AAQGVEELGRSGVGV ESG SYA  DA AAASYL+
Sbjct  61  QSAVAAQGVEELGRSGVGVGESGVSYATGDAQAAASYLT  99


>gi|108797353|ref|YP_637550.1| PE-like protein [Mycobacterium sp. MCS]
 gi|119866438|ref|YP_936390.1| PE domain-containing protein [Mycobacterium sp. KMS]
 gi|126432975|ref|YP_001068666.1| PE domain-containing protein [Mycobacterium sp. JLS]
 gi|108767772|gb|ABG06494.1| PE-like protein [Mycobacterium sp. MCS]
 gi|119692527|gb|ABL89600.1| PE domain protein [Mycobacterium sp. KMS]
 gi|126232775|gb|ABN96175.1| PE domain protein [Mycobacterium sp. JLS]
Length=102

 Score =  102 bits (255),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 63/98 (65%), Positives = 80/98 (82%), Gaps = 0/98 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE L  ASAA+EA+TARLA+AHAAAAP I  V+PP +D+VS+  A   S +G +
Sbjct  1   MTLRVVPEGLTAASAAVEALTARLASAHAAAAPLIGTVLPPAADAVSLQTAAGLSANGGR  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL  98
           H A+AAQGV+ELGRSGVGV +SGASYAA DA+ A++Y+
Sbjct  61  HEAVAAQGVQELGRSGVGVGQSGASYAAGDAMNASAYM  98


>gi|145220930|ref|YP_001131608.1| PE domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|315442100|ref|YP_004074979.1| PE family protein [Mycobacterium sp. Spyr1]
 gi|145213416|gb|ABP42820.1| PE domain protein [Mycobacterium gilvum PYR-GCK]
 gi|315260403|gb|ADT97144.1| PE family protein [Mycobacterium sp. Spyr1]
Length=102

 Score =  100 bits (249),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 62/98 (64%), Positives = 79/98 (81%), Gaps = 0/98 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE L  ASAA+EA+TAR+AAAHAAAAP + AV+PP +D+VS+  A   S +G +
Sbjct  1   MTLRVVPEGLTAASAAVEALTARMAAAHAAAAPLVTAVLPPAADAVSLQTATGLSANGVE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL  98
           H ++AA+GVEELGRSGVGV +S ASY + DA+AA SYL
Sbjct  61  HQSIAARGVEELGRSGVGVGDSAASYVSGDAMAATSYL  98


>gi|15828365|ref|NP_302628.1| PE-family protein [Mycobacterium leprae TN]
 gi|221230842|ref|YP_002504258.1| PE-family protein [Mycobacterium leprae Br4923]
 gi|13093795|emb|CAC32065.1| PE-family protein [Mycobacterium leprae]
 gi|219933949|emb|CAR72633.1| PE-family protein [Mycobacterium leprae Br4923]
Length=102

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 57/97 (59%), Positives = 72/97 (75%), Gaps = 0/97 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE LA  S A++A+TARL AAHAAA P + AV+PP +D VS+  A  FS  G +
Sbjct  1   MTLRVVPEKLAATSEAMKALTARLEAAHAAAFPCLVAVVPPAADPVSLQTAAGFSARGQE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           H  +AAQGVEELGR+G+GV +S   YA  DALAA++Y
Sbjct  61  HALVAAQGVEELGRAGIGVGQSSTHYAISDALAASTY  97


>gi|296167588|ref|ZP_06849913.1| PE-family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897131|gb|EFG76742.1| PE-family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=102

 Score = 94.4 bits (233),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 70/101 (70%), Positives = 80/101 (80%), Gaps = 0/101 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRVVPE LA  SAA+EA+TARLAAAHAAAAP I AV+PP  D VSV  AV FS  GS+
Sbjct  1    MTLRVVPEGLAATSAAVEALTARLAAAHAAAAPAITAVVPPAVDPVSVQTAVGFSAQGSE  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGG  101
            H A+AAQGVEELGR+GVGV E+GASY A D  AAA++  GG
Sbjct  61   HAAVAAQGVEELGRAGVGVGEAGASYLAGDTAAAATFGFGG  101


>gi|240169093|ref|ZP_04747752.1| hypothetical protein MkanA1_07254 [Mycobacterium kansasii ATCC 
12478]
Length=103

 Score = 92.8 bits (229),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 66/101 (66%), Positives = 75/101 (75%), Gaps = 1/101 (0%)

Query  3    LRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQHV  62
            LRVVPE LA ASAA+EA+TARL AAHA AAP I AV+PP +D VSV  A  FSV G  H 
Sbjct  2    LRVVPEGLAAASAAVEALTARLTAAHAGAAPLITAVVPPAADPVSVATAAGFSVQGDIHA  61

Query  63   AMAAQGVEELGRSGVGVAESGASYAARDALAAASY-LSGGL  102
             +AA GVEELGRSG  + ESG  YAA DA+AA +Y +SGGL
Sbjct  62   TVAAGGVEELGRSGAALGESGIGYAAGDAVAACAYGISGGL  102


>gi|118617769|ref|YP_906101.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183983006|ref|YP_001851297.1| PE family protein [Mycobacterium marinum M]
 gi|118569879|gb|ABL04630.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183176332|gb|ACC41442.1| PE family protein [Mycobacterium marinum M]
Length=101

 Score = 90.9 bits (224),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 61/97 (63%), Positives = 75/97 (78%), Gaps = 0/97 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           + LRVVPE L   SAA+EA+TARLAAA+AA AP I AV+PP +D VS+  A+ FS HG +
Sbjct  1   MVLRVVPEGLVATSAAVEALTARLAAANAALAPLITAVVPPAADPVSLEAAIGFSAHGVE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           HVA+  +G+EELGRSGVGV ESG SYA+ DA AA +Y
Sbjct  61  HVAVTTEGIEELGRSGVGVGESGLSYASGDAAAALTY  97


>gi|118467190|ref|YP_883991.1| PE family protein [Mycobacterium avium 104]
 gi|118168477|gb|ABK69374.1| pe family protein [Mycobacterium avium 104]
 gi|212595842|gb|ACJ35527.1| PE11 [Mycobacterium avium subsp. avium]
Length=102

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 78/97 (81%), Gaps = 0/97 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE LA  SAA+EA+TARLAAAHAAAAP I AV+PP +D VS+  A+ FS  G +
Sbjct  1   MTLRVVPEGLAATSAAVEALTARLAAAHAAAAPAITAVVPPAADPVSLQTALGFSAQGQE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           H A+AAQGVEELGR+GVGV E+GASY A D  AAA++
Sbjct  61  HSAVAAQGVEELGRAGVGVGEAGASYLAGDTAAAATF  97


>gi|41409879|ref|NP_962715.1| hypothetical protein MAP3781 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398711|gb|AAS06331.1| hypothetical protein MAP_3781 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=102

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 64/97 (66%), Positives = 78/97 (81%), Gaps = 0/97 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE LA  SAA+EA+TARLAAAHAAAAP I AV+PP +D VS+  A+ FS  G +
Sbjct  1   MTLRVVPEGLAATSAAVEALTARLAAAHAAAAPAITAVVPPAADPVSLQTALGFSAQGQE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           H A+AAQGVEELGR+GVGV ++GASY A D  AAA++
Sbjct  61  HSAVAAQGVEELGRAGVGVGQAGASYLAGDTAAAATF  97


>gi|120401439|ref|YP_951268.1| PE domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954257|gb|ABM11262.1| PE domain protein [Mycobacterium vanbaalenii PYR-1]
Length=102

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 62/98 (64%), Positives = 77/98 (79%), Gaps = 0/98 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE L  A AA+EA+TAR+AAAHAAAAP + AV+PP +D VS+  A  FS   ++
Sbjct  1   MTLRVVPEGLTAAGAAVEALTARMAAAHAAAAPVVTAVLPPAADVVSLQAATGFSARAAE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL  98
           H ++AAQGVEELGRSG+ V ES ASYA  DA+AA+SYL
Sbjct  61  HQSVAAQGVEELGRSGIAVGESAASYAGGDAMAASSYL  98


>gi|254818902|ref|ZP_05223903.1| PE family protein [Mycobacterium intracellulare ATCC 13950]
 gi|212596327|gb|ACJ35569.1| PE11 [Mycobacterium intracellulare ATCC 13950]
Length=102

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 64/97 (66%), Positives = 76/97 (79%), Gaps = 0/97 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE LA  SAA+EA+TARLAAAHAAAAP I AV+PP  D VS+  A+ FS  G +
Sbjct  1   MTLRVVPEGLAATSAAVEALTARLAAAHAAAAPAITAVVPPAVDPVSLQTAMGFSAQGQE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           H AMA QGVEELGR+G+GV E+GASY A D  AAA++
Sbjct  61  HSAMAVQGVEELGRAGLGVGEAGASYLAGDTAAAATF  97


>gi|118619480|ref|YP_907812.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571590|gb|ABL06341.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=104

 Score = 87.8 bits (216),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 67/86 (78%), Gaps = 0/86 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           V LRV+PE LAGASAA+  +TARLAAAHA AAP I AVIPP +D VSV NA  FS  G +
Sbjct  2   VMLRVIPEGLAGASAAVAGLTARLAAAHAVAAPAITAVIPPAADPVSVRNAAGFSAVGVE  61

Query  61  HVAMAAQGVEELGRSGVGVAESGASY  86
           H AMA +G+EELGRSGVGV E+G SY
Sbjct  62  HSAMATEGIEELGRSGVGVGEAGISY  87


>gi|240173309|ref|ZP_04751967.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=104

 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 68/103 (67%), Positives = 80/103 (78%), Gaps = 1/103 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TL+VVPE LA AS A+EA+TARLAAAHAAA P I AV+PP +D VS+  A  FS HGS 
Sbjct  1    MTLQVVPEGLAAASGAVEALTARLAAAHAAALPAITAVVPPAADPVSIQTAAGFSTHGSA  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASY-LSGGL  102
            H A+ A+G+EELGRSG+GVAESG SYAA DA AA +Y  SGG 
Sbjct  61   HAAVVAEGIEELGRSGIGVAESGVSYAAGDAAAAVTYSASGGW  103


>gi|118616921|ref|YP_905253.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183980572|ref|YP_001848863.1| PE family protein, PE5 [Mycobacterium marinum M]
 gi|118569031|gb|ABL03782.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183173898|gb|ACC39008.1| PE family protein, PE5 [Mycobacterium marinum M]
Length=102

 Score = 85.5 bits (210),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 63/97 (65%), Positives = 78/97 (81%), Gaps = 0/97 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE LA ASAA+EA+TARLAAAHA+A+P I+AV+P   D VS+  A  FS  G +
Sbjct  1   MTLRVVPEGLAAASAAVEALTARLAAAHASASPVISAVVPAAVDPVSLQTAAGFSAQGIE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           H A+AA+GVEELGR+G+GV ESG SY A DA+AAA+Y
Sbjct  61  HAAVAAEGVEELGRAGLGVGESGVSYLAGDAVAAATY  97


>gi|169627151|ref|YP_001700800.1| PE family protein [Mycobacterium abscessus ATCC 19977]
 gi|169629317|ref|YP_001702966.1| PE family protein [Mycobacterium abscessus ATCC 19977]
 gi|169239118|emb|CAM60146.1| Probable PE family protein [Mycobacterium abscessus]
 gi|169241284|emb|CAM62312.1| Hypothetical PE family protein [Mycobacterium abscessus]
Length=102

 Score = 84.0 bits (206),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 59/98 (61%), Positives = 72/98 (74%), Gaps = 0/98 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           + L VVPE L   SAA+EA+TARLAAAHAAAAP I AV+PP +D VS+  A  FS  G +
Sbjct  1   MNLNVVPEGLTATSAAVEALTARLAAAHAAAAPVIGAVVPPAADPVSLETAAGFSARGIE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL  98
           H  +AAQ VEELGR+G+GV+ES ASY   D  AAA+Y+
Sbjct  61  HSGVAAQAVEELGRAGLGVSESAASYTTGDMQAAAAYM  98


>gi|15839671|ref|NP_334708.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31791464|ref|NP_853957.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116715|ref|YP_177710.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 81 more sequence titles
 Length=102

 Score = 84.0 bits (206),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 77/97 (80%), Gaps = 0/97 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE LA ASAA+EA+TARLAAAHA+AAP I AV+PP +D VS+  A  FS  G +
Sbjct  1   MTLRVVPEGLAAASAAVEALTARLAAAHASAAPVITAVVPPAADPVSLQTAAGFSAQGVE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           H  + A+GVEELGR+GVGV ESGASY A DA AAA+Y
Sbjct  61  HAVVTAEGVEELGRAGVGVGESGASYLAGDAAAAATY  97


>gi|240173110|ref|ZP_04751768.1| PE-family protein [Mycobacterium kansasii ATCC 12478]
Length=102

 Score = 84.0 bits (206),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 64/90 (72%), Positives = 72/90 (80%), Gaps = 0/90 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE LA ASAA+EA+TARLAAAHAAAAP I AV+PP  D VS+  A EFSV G +
Sbjct  1   MTLRVVPEGLAAASAAVEALTARLAAAHAAAAPSIVAVVPPAVDPVSLQTAAEFSVQGQE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARD  90
           H  +A QGVEELGR+GVGV ESGASY A D
Sbjct  61  HAVVATQGVEELGRAGVGVGESGASYLAGD  90


>gi|169627767|ref|YP_001701416.1| PE family protein [Mycobacterium abscessus ATCC 19977]
 gi|169239734|emb|CAM60762.1| PE family protein [Mycobacterium abscessus]
Length=102

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 69/100 (69%), Gaps = 0/100 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           ++L VVPE L  ASAA+EA+TARLAA +AAAAP I AV+PP +D VS+ +A  FS HG +
Sbjct  1   MSLNVVPEGLTAASAAVEALTARLAAVNAAAAPVIGAVMPPAADPVSMQSAALFSAHGLE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSG  100
                A+   ELGRSGVG  E+ ASY   D  AAA+YL G
Sbjct  61  RTGAGARAAYELGRSGVGATEAAASYTVGDIQAAATYLPG  100


>gi|317506395|ref|ZP_07964203.1| PE family protein [Segniliparus rugosus ATCC BAA-974]
 gi|316255311|gb|EFV14573.1| PE family protein [Segniliparus rugosus ATCC BAA-974]
Length=102

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 58/97 (60%), Positives = 70/97 (73%), Gaps = 0/97 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           + L+VVPE L  ASA +EA+TARLAAA AAAAP I AV+PP +D VS+  A  FS  GS 
Sbjct  1   MILKVVPEGLMAASAEVEALTARLAAAQAAAAPVIGAVVPPAADPVSLQAAAGFSARGSS  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           H A+AA+ VEELGRSG+GVAE+  SYA  D   AA +
Sbjct  61  HTAVAAEAVEELGRSGLGVAETAESYAVGDLQGAAVF  97


>gi|254777309|ref|ZP_05218825.1| hypothetical protein MaviaA2_21931 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=98

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 61/93 (66%), Positives = 74/93 (80%), Gaps = 0/93 (0%)

Query  5   VVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQHVAM  64
           +VPE LA  SAA+EA+TARLAAAHAAAAP I AV+PP +D VS+  A+ FS  G +H A+
Sbjct  1   MVPEGLAATSAAVEALTARLAAAHAAAAPAITAVVPPAADPVSLQTALGFSAQGQEHSAV  60

Query  65  AAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           AAQGVEELGR+GVGV E+GASY A D  AAA++
Sbjct  61  AAQGVEELGRAGVGVGEAGASYLAGDTAAAATF  93


>gi|240168499|ref|ZP_04747158.1| PE family protein, PE5 [Mycobacterium kansasii ATCC 12478]
Length=104

 Score = 80.9 bits (198),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 70/103 (68%), Positives = 81/103 (79%), Gaps = 1/103 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRVVPE LA ASAA+EA+TARLAAA AAAAP I AV+PP +D VS+  A  FS  G +
Sbjct  1    MTLRVVPEGLAAASAAVEALTARLAAAQAAAAPLITAVVPPAADPVSLQTAAGFSGQGVE  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGGL  102
            H A+ A+GVEELGRSGVGV E+G SYA  DA AAA+YL SGGL
Sbjct  61   HAAIVAEGVEELGRSGVGVGEAGVSYAVGDAAAAATYLASGGL  103


>gi|342859231|ref|ZP_08715885.1| hypothetical protein MCOL_10143 [Mycobacterium colombiense CECT 
3035]
 gi|342133472|gb|EGT86675.1| hypothetical protein MCOL_10143 [Mycobacterium colombiense CECT 
3035]
Length=98

 Score = 80.5 bits (197),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 61/93 (66%), Positives = 72/93 (78%), Gaps = 0/93 (0%)

Query  5   VVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQHVAM  64
           +VPE LA  SAA+EA+TARLAAAHAAAAP I AV+PP  D VS+  A  FS  G +H AM
Sbjct  1   MVPEGLAATSAAVEALTARLAAAHAAAAPAITAVVPPAVDPVSLQTAAGFSAQGQEHSAM  60

Query  65  AAQGVEELGRSGVGVAESGASYAARDALAAASY  97
           AAQGVEELGR+GVGV ++GASY A D  AAA++
Sbjct  61  AAQGVEELGRAGVGVGQAGASYLAGDTAAAATF  93


>gi|240170992|ref|ZP_04749651.1| hypothetical protein MkanA1_16900 [Mycobacterium kansasii ATCC 
12478]
Length=104

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 70/103 (68%), Positives = 82/103 (80%), Gaps = 1/103 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TL VVPE LA ASAA+EA+TARLAAAHAAAAP I AV+PP +D VS+   +  S  G++
Sbjct  1    MTLWVVPEGLAAASAAVEALTARLAAAHAAAAPVITAVVPPAADPVSLQTGIGLSALGNE  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGGL  102
            HVAMAA+ VEELGRSGVGV ESG SYAA DA AA +YL +GGL
Sbjct  61   HVAMAAEAVEELGRSGVGVGESGVSYAAGDAAAAGTYLGAGGL  103


>gi|41406220|ref|NP_959056.1| hypothetical protein MAP0122 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118464188|ref|YP_879413.1| PE family protein [Mycobacterium avium 104]
 gi|41394568|gb|AAS02439.1| PE_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165475|gb|ABK66372.1| PE family protein [Mycobacterium avium 104]
 gi|336458087|gb|EGO37073.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=101

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 57/101 (57%), Positives = 77/101 (77%), Gaps = 0/101 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRV+PE LA  SAA++A+TA+LAA HAAAAP ++ V+PP +D VS+  A  FS  GSQ
Sbjct  1    MTLRVIPEGLAATSAAVDAITAQLAAVHAAAAPVVSVVVPPAADPVSLAAAAVFSERGSQ  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGG  101
            H A A +GVE LGR+G+GV+ +G +Y A DA +A++YLS G
Sbjct  61   HSAAATKGVEVLGRAGLGVSLAGVNYVAGDAASASTYLSAG  101


>gi|323718348|gb|EGB27525.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
Length=127

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 65/94 (70%), Positives = 75/94 (80%), Gaps = 0/94 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            VTLRVVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  34   VTLRVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  93

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAA  94
            H A+A +GVEELGRSGV V ESG  YAA DA+AA
Sbjct  94   HAAIAGEGVEELGRSGVAVGESGIGYAAGDAVAA  127


>gi|333988933|ref|YP_004521547.1| PE family protein PE5 [Mycobacterium sp. JDM601]
 gi|333484901|gb|AEF34293.1| PE family protein PE5 [Mycobacterium sp. JDM601]
Length=103

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 75/100 (75%), Gaps = 0/100 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TL VVPE LA ASAA+EA+TARLAAA AAAAP I AV+PP +D VS+  A  FS  G++
Sbjct  1   MTLNVVPEGLAAASAAVEALTARLAAAQAAAAPLITAVVPPAADPVSLQTAAGFSAQGTE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSG  100
           H A+AAQG  ELGR+GVGV ESG +YAA DA  A+ Y  G
Sbjct  61  HAAVAAQGATELGRAGVGVGESGVNYAAGDAAGASRYFMG  100


>gi|254773162|ref|ZP_05214678.1| PE family protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|212595728|gb|ACJ35519.1| PE1 [Mycobacterium avium subsp. avium]
Length=101

 Score = 77.8 bits (190),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 56/101 (56%), Positives = 76/101 (76%), Gaps = 0/101 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRV+PE LA  SAA++ +TA+LAA HAAAAP ++ V+PP +D VS+  A  FS  GSQ
Sbjct  1    MTLRVIPEGLAATSAAVDVITAQLAAVHAAAAPVVSVVVPPAADPVSLAAAAVFSERGSQ  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGG  101
            H A A +GVE LGR+G+GV+ +G +Y A DA +A++YLS G
Sbjct  61   HSAAATKGVEVLGRAGLGVSLAGVNYVAGDAASASTYLSAG  101


>gi|342860175|ref|ZP_08716827.1| PE family protein [Mycobacterium colombiense CECT 3035]
 gi|342132553|gb|EGT85782.1| PE family protein [Mycobacterium colombiense CECT 3035]
Length=101

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 57/101 (57%), Positives = 76/101 (76%), Gaps = 0/101 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRV+PE LA  SAA++A+TA+LAA HAAAAP ++ V+PP +D VS+  A  FS  GSQ
Sbjct  1    MTLRVLPEGLAATSAAVDAITAQLAAVHAAAAPVVSVVVPPAADPVSLVAAAVFSERGSQ  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGG  101
            H A AA+GVE LGR+G+GV+ +G +Y A DA  A++YL  G
Sbjct  61   HSAAAAKGVEVLGRAGLGVSLAGVNYVAGDAAGASTYLGAG  101


>gi|340628015|ref|YP_004746467.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340006205|emb|CCC45379.1| PE family protein [Mycobacterium canettii CIPT 140010059]
Length=104

 Score = 76.3 bits (186),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 71/102 (70%), Positives = 83/102 (82%), Gaps = 1/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRVVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  1    MTLRVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGG  101
            H A+AA+GVEELGRSGV V ESG  YAA DA+AAA+YL SGG
Sbjct  61   HAAIAAEGVEELGRSGVAVGESGVGYAAGDAVAAATYLVSGG  102


>gi|308372403|ref|ZP_07428546.2| putative PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308333337|gb|EFP22188.1| putative PE family protein [Mycobacterium tuberculosis SUMu004]
Length=102

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 63/93 (68%), Positives = 73/93 (79%), Gaps = 0/93 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            VTL VVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  10   VTLSVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  69

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALA  93
            H A+A +GVEELGRSGV V ESG  YAA DA+A
Sbjct  70   HAAIAGEGVEELGRSGVAVGESGIGYAAGDAVA  102


>gi|254365653|ref|ZP_04981698.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|297635651|ref|ZP_06953431.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297732649|ref|ZP_06961767.1| PE family protein [Mycobacterium tuberculosis KZN R506]
 gi|134151166|gb|EBA43211.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=107

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 71/102 (70%), Positives = 82/102 (81%), Gaps = 1/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            VTLRVVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  4    VTLRVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  63

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGG  101
            H A+A +GVEELGRSGV V ESG  YAA DA+AAA+YL SGG
Sbjct  64   HAAIAGEGVEELGRSGVAVGESGIGYAAGDAVAAATYLVSGG  105


>gi|306777325|ref|ZP_07415662.1| putative PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306973440|ref|ZP_07486101.1| putative PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307085746|ref|ZP_07494859.1| putative PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|308214314|gb|EFO73713.1| putative PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308357183|gb|EFP46034.1| putative PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308364738|gb|EFP53589.1| putative PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|323718352|gb|EGB27528.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
 gi|339299470|gb|AEJ51580.1| PE family protein [Mycobacterium tuberculosis CCDC5180]
Length=105

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 71/102 (70%), Positives = 82/102 (81%), Gaps = 1/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            VTLRVVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  2    VTLRVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  61

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGG  101
            H A+A +GVEELGRSGV V ESG  YAA DA+AAA+YL SGG
Sbjct  62   HAAIAGEGVEELGRSGVAVGESGIGYAAGDAVAAATYLVSGG  103


>gi|15842585|ref|NP_337622.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148824213|ref|YP_001288967.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|289553187|ref|ZP_06442397.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|13882898|gb|AAK47436.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148722740|gb|ABR07365.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|289437819|gb|EFD20312.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|328457658|gb|AEB03081.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|344220857|gb|AEN01488.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=137

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 71/102 (70%), Positives = 82/102 (81%), Gaps = 1/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            VTLRVVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  34   VTLRVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  93

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGG  101
            H A+A +GVEELGRSGV V ESG  YAA DA+AAA+YL SGG
Sbjct  94   HAAIAGEGVEELGRSGVAVGESGIGYAAGDAVAAATYLVSGG  135


>gi|31794200|ref|NP_856693.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57117050|ref|YP_177685.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121638905|ref|YP_979129.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 19 more sequence titles
 Length=104

 Score = 74.3 bits (181),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 70/102 (69%), Positives = 82/102 (81%), Gaps = 1/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRVVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  1    MTLRVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGG  101
            H A+A +GVEELGRSGV V ESG  YAA DA+AAA+YL SGG
Sbjct  61   HAAIAGEGVEELGRSGVAVGESGIGYAAGDAVAAATYLVSGG  102


>gi|183983962|ref|YP_001852253.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183177288|gb|ACC42398.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=103

 Score = 72.8 bits (177),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 78/100 (78%), Gaps = 0/100 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TL+VVPE L  ASAA++A+TARLAAAHAAAAP I+AV+PP  D VS+  AV FS  G +
Sbjct  1   MTLQVVPEGLLAASAAVQAITARLAAAHAAAAPAISAVVPPAVDPVSLQTAVVFSAQGGE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSG  100
              +  QGV+EL RSGVGVAESGA YAARDA+AAASY  G
Sbjct  61  RALVGVQGVDELARSGVGVAESGADYAARDAMAAASYTFG  100


>gi|306804804|ref|ZP_07441472.1| putative PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306808997|ref|ZP_07445665.1| putative PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308372321|ref|ZP_07667351.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 6 more sequence titles
 Length=105

 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 70/102 (69%), Positives = 81/102 (80%), Gaps = 1/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            VTL VVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  2    VTLSVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  61

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGG  101
            H A+A +GVEELGRSGV V ESG  YAA DA+AAA+YL SGG
Sbjct  62   HAAIAGEGVEELGRSGVAVGESGIGYAAGDAVAAATYLVSGG  103


>gi|167966626|ref|ZP_02548903.1| PE family protein [Mycobacterium tuberculosis H37Ra]
Length=107

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 70/102 (69%), Positives = 81/102 (80%), Gaps = 1/102 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            VTL VVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  4    VTLSVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  63

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGG  101
            H A+A +GVEELGRSGV V ESG  YAA DA+AAA+YL SGG
Sbjct  64   HAAIAGEGVEELGRSGVAVGESGIGYAAGDAVAAATYLVSGG  105


>gi|336460186|gb|EGO39090.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=80

 Score = 72.0 bits (175),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 55/79 (70%), Positives = 65/79 (83%), Gaps = 0/79 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           +TLRVVPE LA  SAA+EA+TARLAAAHAAAAP I AV+PP +D VS+  A+ FS  G +
Sbjct  1   MTLRVVPEGLAATSAAVEALTARLAAAHAAAAPAITAVVPPAADPVSLQTALGFSAQGQE  60

Query  61  HVAMAAQGVEELGRSGVGV  79
           H A+AAQGVEELGR+GVGV
Sbjct  61  HSAVAAQGVEELGRAGVGV  79


>gi|212596236|gb|ACJ35562.1| PE1 [Mycobacterium intracellulare ATCC 13950]
Length=105

 Score = 72.0 bits (175),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 62/101 (62%), Positives = 79/101 (79%), Gaps = 0/101 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRV+PE LA  SAA+EA+TA+LAAAHAAAAP ++AV+PP +D VS+  A  FS  GSQ
Sbjct  4    MTLRVLPEGLAATSAAVEAITAQLAAAHAAAAPVVSAVVPPAADPVSLGAAAVFSGRGSQ  63

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGG  101
            H A AA+GVE LGR+G+GV+ +G  YAA+DA  AA+YL  G
Sbjct  64   HTAAAAKGVEVLGRAGLGVSLAGVGYAAQDAADAATYLGAG  104


>gi|254821558|ref|ZP_05226559.1| PE family protein [Mycobacterium intracellulare ATCC 13950]
Length=102

 Score = 72.0 bits (175),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 62/101 (62%), Positives = 79/101 (79%), Gaps = 0/101 (0%)

Query  1    VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
            +TLRV+PE LA  SAA+EA+TA+LAAAHAAAAP ++AV+PP +D VS+  A  FS  GSQ
Sbjct  1    MTLRVLPEGLAATSAAVEAITAQLAAAHAAAAPVVSAVVPPAADPVSLGAAAVFSGRGSQ  60

Query  61   HVAMAAQGVEELGRSGVGVAESGASYAARDALAAASYLSGG  101
            H A AA+GVE LGR+G+GV+ +G  YAA+DA  AA+YL  G
Sbjct  61   HTAAAAKGVEVLGRAGLGVSLAGVGYAAQDAADAATYLGAG  101


>gi|183985227|ref|YP_001853518.1| PE family protein, PE5_1 [Mycobacterium marinum M]
 gi|183178553|gb|ACC43663.1| PE family protein, PE5_1 [Mycobacterium marinum M]
Length=103

 Score = 70.1 bits (170),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 68/86 (80%), Gaps = 0/86 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           + LRV+PE LAGASAA+ A+TARLAAAHA AAP I AVIPP +D VSV NA  FS  G +
Sbjct  1   MMLRVIPEGLAGASAAVAALTARLAAAHAVAAPAITAVIPPAADPVSVRNAAGFSAVGVE  60

Query  61  HVAMAAQGVEELGRSGVGVAESGASY  86
           H AMA +G+EELGRSGVGV E+G SY
Sbjct  61  HSAMATEGIEELGRSGVGVGEAGISY  86


>gi|317506269|ref|ZP_07964086.1| PE family protein [Segniliparus rugosus ATCC BAA-974]
 gi|316255435|gb|EFV14688.1| PE family protein [Segniliparus rugosus ATCC BAA-974]
Length=101

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 49/88 (56%), Positives = 58/88 (66%), Gaps = 0/88 (0%)

Query  3   LRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQHV  62
           LR +PE +A  SA +E++TARLAAAHAAAAP I AV+PP  D VS   A E SVHG+Q  
Sbjct  3   LRTLPEGMAATSALMESITARLAAAHAAAAPIITAVVPPAIDVVSTSAATELSVHGAQRQ  62

Query  63  AMAAQGVEELGRSGVGVAESGASYAARD  90
              A GV  L  S +GVA+SG SY   D
Sbjct  63  ISGATGVSALAASSLGVADSGLSYQEGD  90


>gi|308369801|ref|ZP_07419129.2| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308371210|ref|ZP_07424193.2| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308373640|ref|ZP_07433147.2| putative PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308374703|ref|ZP_07437033.2| putative PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308326369|gb|EFP15220.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308329490|gb|EFP18341.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308336869|gb|EFP25720.1| putative PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308341019|gb|EFP29870.1| putative PE family protein [Mycobacterium tuberculosis SUMu006]
Length=104

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 58/86 (68%), Positives = 67/86 (78%), Gaps = 0/86 (0%)

Query  1   VTLRVVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQ  60
           VTL VVPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+
Sbjct  10  VTLSVVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSE  69

Query  61  HVAMAAQGVEELGRSGVGVAESGASY  86
           H A+A +GVEELGRSGV V ESG  Y
Sbjct  70  HAAIAGEGVEELGRSGVAVGESGIGY  95


>gi|308380551|ref|ZP_07490320.2| putative PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|313659981|ref|ZP_07816861.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|308361135|gb|EFP49986.1| putative PE family protein [Mycobacterium tuberculosis SUMu011]
Length=100

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 66/98 (68%), Positives = 78/98 (80%), Gaps = 1/98 (1%)

Query  5    VVPESLAGASAAIEAVTARLAAAHAAAAPFIAAVIPPGSDSVSVCNAVEFSVHGSQHVAM  64
            +VPE LA ASAA+EA+TARLAAAHA AAP I AV+ P +D VS+ +AV FS  GS+H A+
Sbjct  1    MVPEGLAAASAAVEALTARLAAAHAGAAPAITAVVAPAADPVSLQSAVGFSALGSEHAAI  60

Query  65   AAQGVEELGRSGVGVAESGASYAARDALAAASYL-SGG  101
            A +GVEELGRSGV V ESG  YAA DA+AAA+YL SGG
Sbjct  61   AGEGVEELGRSGVAVGESGIGYAAGDAVAAATYLVSGG  98



Lambda     K      H
   0.313    0.124    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128294982110


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40