BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1388
Length=190
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608527|ref|NP_215904.1| putative integration host factor MI... 382 1e-104
gi|340626402|ref|YP_004744854.1| putative integration host facto... 379 1e-103
gi|289753468|ref|ZP_06512846.1| integration host factor mihF [My... 310 6e-83
gi|15840847|ref|NP_335884.1| hypothetical protein MT1433 [Mycoba... 213 1e-53
gi|183982214|ref|YP_001850505.1| integration host factor MihF [M... 211 3e-53
gi|167966852|ref|ZP_02549129.1| integration host factor mihF [My... 198 3e-49
gi|240172958|ref|ZP_04751616.1| integration host factor MihF [My... 197 7e-49
gi|254821093|ref|ZP_05226094.1| integration host factor MihF [My... 196 2e-48
gi|118617402|ref|YP_905734.1| integration host factor MihF [Myco... 165 3e-39
gi|41407220|ref|NP_960056.1| MIHF [Mycobacterium avium subsp. pa... 165 4e-39
gi|294994949|ref|ZP_06800640.1| hypothetical protein Mtub2_10670... 163 1e-38
gi|15827196|ref|NP_301459.1| integration host factor [Mycobacter... 157 1e-36
gi|118462761|ref|YP_882568.1| MihF protein [Mycobacterium avium ... 155 2e-36
gi|343924554|ref|ZP_08764102.1| hypothetical protein GOALK_017_0... 155 4e-36
gi|108799336|ref|YP_639533.1| MIHF [Mycobacterium sp. MCS] >gi|1... 151 6e-35
gi|120403650|ref|YP_953479.1| MihF [Mycobacterium vanbaalenii PY... 150 6e-35
gi|169629908|ref|YP_001703557.1| putative integration host facto... 150 1e-34
gi|118473958|ref|YP_887366.1| integration host factor [Mycobacte... 149 2e-34
gi|145224323|ref|YP_001135001.1| MihF [Mycobacterium gilvum PYR-... 149 3e-34
gi|262202271|ref|YP_003273479.1| hypothetical protein Gbro_2344 ... 148 4e-34
gi|312139571|ref|YP_004006907.1| integration host factor ihf [Rh... 147 8e-34
gi|300781108|ref|ZP_07090962.1| integration host factor MihF [Co... 145 2e-33
gi|226306494|ref|YP_002766454.1| hypothetical protein RER_30070 ... 145 2e-33
gi|111024104|ref|YP_707076.1| integration host factor [Rhodococc... 145 2e-33
gi|319950539|ref|ZP_08024449.1| integration host factor Ihf [Die... 145 4e-33
gi|326382163|ref|ZP_08203855.1| integration host factor MihF [Go... 142 2e-32
gi|296140278|ref|YP_003647521.1| integration host factor [Tsukam... 142 2e-32
gi|213965625|ref|ZP_03393819.1| integration host factor [Coryneb... 141 6e-32
gi|333919528|ref|YP_004493109.1| integration host factor MihF [A... 139 2e-31
gi|227549203|ref|ZP_03979252.1| integration host factor [Coryneb... 137 8e-31
gi|340794467|ref|YP_004759930.1| IHF DNA-binding transcription r... 135 4e-30
gi|296394694|ref|YP_003659578.1| MihF protein [Segniliparus rotu... 134 6e-30
gi|317505990|ref|ZP_07963822.1| integration host factor MihF [Se... 134 6e-30
gi|54025587|ref|YP_119829.1| putative integration host factor [N... 134 6e-30
gi|237785579|ref|YP_002906284.1| putative IHF family transcripti... 134 1e-29
gi|172040651|ref|YP_001800365.1| putative integration host facto... 133 1e-29
gi|334563391|ref|ZP_08516382.1| integration host factor ihf [Cor... 133 1e-29
gi|68536097|ref|YP_250802.1| putative integration host factor [C... 132 2e-29
gi|296117972|ref|ZP_06836555.1| mIHF protein [Corynebacterium am... 130 1e-28
gi|325001016|ref|ZP_08122128.1| hypothetical protein PseP1_19722... 129 2e-28
gi|225021356|ref|ZP_03710548.1| hypothetical protein CORMATOL_01... 129 2e-28
gi|145295729|ref|YP_001138550.1| hypothetical protein cgR_1656 [... 129 3e-28
gi|300784660|ref|YP_003764951.1| integration host factor [Amycol... 129 3e-28
gi|19552819|ref|NP_600821.1| hypothetical protein NCgl1545 [Cory... 128 3e-28
gi|25028283|ref|NP_738337.1| hypothetical protein CE1727 [Coryne... 127 6e-28
gi|227833005|ref|YP_002834712.1| putative integration host facto... 127 7e-28
gi|305681277|ref|ZP_07404084.1| putative integration host factor... 127 8e-28
gi|302525871|ref|ZP_07278213.1| integration host factor [Strepto... 126 1e-27
gi|227504410|ref|ZP_03934459.1| integration host factor [Coryneb... 126 2e-27
gi|337290850|ref|YP_004629871.1| integration host factor [Coryne... 125 2e-27
>gi|15608527|ref|NP_215904.1| putative integration host factor MIHF [Mycobacterium tuberculosis
H37Rv]
gi|31792582|ref|NP_855075.1| putative integration host factor MIHF [Mycobacterium bovis AF2122/97]
gi|121637318|ref|YP_977541.1| putative integration host factor mihF [Mycobacterium bovis BCG
str. Pasteur 1173P2]
38 more sequence titles
Length=190
Score = 382 bits (982), Expect = 1e-104, Method: Compositional matrix adjust.
Identities = 189/190 (99%), Positives = 190/190 (100%), Gaps = 0/190 (0%)
Query 1 LLGNTIHVPCQPCRHGHGAPSRGLRGRPADRWPVARATPTLHVCPQNQGVGLDFVRKPEY 60
+LGNTIHVPCQPCRHGHGAPSRGLRGRPADRWPVARATPTLHVCPQNQGVGLDFVRKPEY
Sbjct 1 MLGNTIHVPCQPCRHGHGAPSRGLRGRPADRWPVARATPTLHVCPQNQGVGLDFVRKPEY 60
Query 61 GRLRWPAYPAGTNNDRLISMRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRG 120
GRLRWPAYPAGTNNDRLISMRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRG
Sbjct 61 GRLRWPAYPAGTNNDRLISMRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRG 120
Query 121 GTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQR 180
GTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQR
Sbjct 121 GTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQR 180
Query 181 KALLEKFGSA 190
KALLEKFGSA
Sbjct 181 KALLEKFGSA 190
>gi|340626402|ref|YP_004744854.1| putative integration host factor MIHF [Mycobacterium canettii
CIPT 140010059]
gi|340004592|emb|CCC43736.1| putative integration host factor MIHF [Mycobacterium canettii
CIPT 140010059]
Length=190
Score = 379 bits (974), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 188/190 (99%), Positives = 189/190 (99%), Gaps = 0/190 (0%)
Query 1 LLGNTIHVPCQPCRHGHGAPSRGLRGRPADRWPVARATPTLHVCPQNQGVGLDFVRKPEY 60
+LGNTIHVPCQPCRHGHGAPSRGLRGR ADRWPVARATPTLHVCPQNQGVGLDFVRKPEY
Sbjct 1 MLGNTIHVPCQPCRHGHGAPSRGLRGRLADRWPVARATPTLHVCPQNQGVGLDFVRKPEY 60
Query 61 GRLRWPAYPAGTNNDRLISMRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRG 120
GRLRWPAYPAGTNNDRLISMRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRG
Sbjct 61 GRLRWPAYPAGTNNDRLISMRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRG 120
Query 121 GTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQR 180
GTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQR
Sbjct 121 GTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQR 180
Query 181 KALLEKFGSA 190
KALLEKFGSA
Sbjct 181 KALLEKFGSA 190
>gi|289753468|ref|ZP_06512846.1| integration host factor mihF [Mycobacterium tuberculosis EAS054]
gi|298524894|ref|ZP_07012303.1| MIHF [Mycobacterium tuberculosis 94_M4241A]
gi|289694055|gb|EFD61484.1| integration host factor mihF [Mycobacterium tuberculosis EAS054]
gi|298494688|gb|EFI29982.1| MIHF [Mycobacterium tuberculosis 94_M4241A]
Length=157
Score = 310 bits (794), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 156/157 (99%), Positives = 157/157 (100%), Gaps = 0/157 (0%)
Query 34 VARATPTLHVCPQNQGVGLDFVRKPEYGRLRWPAYPAGTNNDRLISMRDGGIVALPQLTD 93
+ARATPTLHVCPQNQGVGLDFVRKPEYGRLRWPAYPAGTNNDRLISMRDGGIVALPQLTD
Sbjct 1 MARATPTLHVCPQNQGVGLDFVRKPEYGRLRWPAYPAGTNNDRLISMRDGGIVALPQLTD 60
Query 94 EQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSALLEALPKVG 153
EQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSALLEALPKVG
Sbjct 61 EQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSALLEALPKVG 120
Query 154 KVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
KVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA
Sbjct 121 KVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 157
>gi|15840847|ref|NP_335884.1| hypothetical protein MT1433 [Mycobacterium tuberculosis CDC1551]
gi|289757494|ref|ZP_06516872.1| integration host factor mihF [Mycobacterium tuberculosis T85]
gi|13881046|gb|AAK45698.1| mIHF [Mycobacterium tuberculosis CDC1551]
gi|289713058|gb|EFD77070.1| integration host factor mihF [Mycobacterium tuberculosis T85]
Length=111
Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)
Query 80 MRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGK 139
MRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGK
Sbjct 1 MRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGK 60
Query 140 MKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
MKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA
Sbjct 61 MKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 111
>gi|183982214|ref|YP_001850505.1| integration host factor MihF [Mycobacterium marinum M]
gi|183175540|gb|ACC40650.1| integration host factor MihF [Mycobacterium marinum M]
Length=111
Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/111 (99%), Positives = 111/111 (100%), Gaps = 0/111 (0%)
Query 80 MRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGK 139
MRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAE+DEVLGK
Sbjct 1 MRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAETDEVLGK 60
Query 140 MKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
MKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA
Sbjct 61 MKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 111
>gi|167966852|ref|ZP_02549129.1| integration host factor mihF [Mycobacterium tuberculosis H37Ra]
gi|254550401|ref|ZP_05140848.1| integration host factor mihF [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|297633942|ref|ZP_06951722.1| integration host factor mihF [Mycobacterium tuberculosis KZN
4207]
28 more sequence titles
Length=105
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 105
>gi|240172958|ref|ZP_04751616.1| integration host factor MihF [Mycobacterium kansasii ATCC 12478]
Length=105
Score = 197 bits (501), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAE+DEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 105
>gi|254821093|ref|ZP_05226094.1| integration host factor MihF [Mycobacterium intracellulare ATCC
13950]
gi|296170746|ref|ZP_06852318.1| integration host factor MihF [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|342858670|ref|ZP_08715325.1| integration host factor MihF [Mycobacterium colombiense CECT
3035]
gi|295894561|gb|EFG74298.1| integration host factor MihF [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|342134374|gb|EGT87554.1| integration host factor MihF [Mycobacterium colombiense CECT
3035]
Length=104
Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/104 (99%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAE+DEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 189
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 104
>gi|118617402|ref|YP_905734.1| integration host factor MihF [Mycobacterium ulcerans Agy99]
gi|118569512|gb|ABL04263.1| integration host factor MihF [Mycobacterium ulcerans Agy99]
Length=105
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/105 (98%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARR+RAELKDRLKRGGTNLTQVLKDAE+DEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRSRAELKDRLKRGGTNLTQVLKDAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 105
>gi|41407220|ref|NP_960056.1| MIHF [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395571|gb|AAS03439.1| MIHF [Mycobacterium avium subsp. paratuberculosis K-10]
Length=111
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/110 (97%), Positives = 109/110 (99%), Gaps = 0/110 (0%)
Query 80 MRDGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGK 139
+R GGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNL+QVLKDAE+DEVLGK
Sbjct 2 IRYGGIVALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLSQVLKDAETDEVLGK 61
Query 140 MKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 189
MKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS
Sbjct 62 MKVSALLEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 111
>gi|294994949|ref|ZP_06800640.1| hypothetical protein Mtub2_10670 [Mycobacterium tuberculosis
210]
Length=89
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/86 (99%), Positives = 85/86 (99%), Gaps = 0/86 (0%)
Query 105 AARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTEL 164
AARRAR ELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTEL
Sbjct 4 AARRARVELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTEL 63
Query 165 EIAPTRRLRGLGDRQRKALLEKFGSA 190
EIAPTRRLRGLGDRQRKALLEKFGSA
Sbjct 64 EIAPTRRLRGLGDRQRKALLEKFGSA 89
>gi|15827196|ref|NP_301459.1| integration host factor [Mycobacterium leprae TN]
gi|221229674|ref|YP_002503090.1| putative integration host factor [Mycobacterium leprae Br4923]
gi|13092744|emb|CAC30048.1| putative integration host factor [Mycobacterium leprae]
gi|219932781|emb|CAR70633.1| putative integration host factor [Mycobacterium leprae Br4923]
Length=105
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/105 (98%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
LEALPKVGKVKAQEIMTEL+IAPTRRLRGLG+RQRKALLEKFGSA
Sbjct 61 LEALPKVGKVKAQEIMTELDIAPTRRLRGLGERQRKALLEKFGSA 105
>gi|118462761|ref|YP_882568.1| MihF protein [Mycobacterium avium 104]
gi|254775832|ref|ZP_05217348.1| MIHF [Mycobacterium avium subsp. avium ATCC 25291]
gi|118164048|gb|ABK64945.1| MihF protein [Mycobacterium avium 104]
gi|336461633|gb|EGO40498.1| hypothetical protein MAPs_28910 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=104
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/104 (98%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNL+QVLKDAE+DEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLSQVLKDAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 189
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 104
>gi|343924554|ref|ZP_08764102.1| hypothetical protein GOALK_017_00120 [Gordonia alkanivorans NBRC
16433]
gi|343765489|dbj|GAA11028.1| hypothetical protein GOALK_017_00120 [Gordonia alkanivorans NBRC
16433]
Length=104
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/104 (93%), Positives = 101/104 (98%), Gaps = 0/104 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARR RAELK+RLKRGGT+L QVLKDAE+DE+LGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRVRAELKERLKRGGTDLQQVLKDAENDEILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 189
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF S
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFSS 104
>gi|108799336|ref|YP_639533.1| MIHF [Mycobacterium sp. MCS]
gi|119868452|ref|YP_938404.1| MihF [Mycobacterium sp. KMS]
gi|126434994|ref|YP_001070685.1| MihF [Mycobacterium sp. JLS]
gi|108769755|gb|ABG08477.1| MIHF [Mycobacterium sp. MCS]
gi|119694541|gb|ABL91614.1| MihF [Mycobacterium sp. KMS]
gi|126234794|gb|ABN98194.1| MihF [Mycobacterium sp. JLS]
Length=105
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/105 (95%), Positives = 102/105 (98%), Gaps = 0/105 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNL QVLKDAE+DEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLKQVLKDAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF +
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFDQS 105
>gi|120403650|ref|YP_953479.1| MihF [Mycobacterium vanbaalenii PYR-1]
gi|333990948|ref|YP_004523562.1| integration host factor MihF [Mycobacterium sp. JDM601]
gi|119956468|gb|ABM13473.1| MihF [Mycobacterium vanbaalenii PYR-1]
gi|333486916|gb|AEF36308.1| integration host factor MihF [Mycobacterium sp. JDM601]
Length=105
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/102 (98%), Positives = 101/102 (99%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNL QVLKDAE+DEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLKQVLKDAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 102
>gi|169629908|ref|YP_001703557.1| putative integration host factor MihF [Mycobacterium abscessus
ATCC 19977]
gi|169241875|emb|CAM62903.1| Putative integration host factor (MihF) [Mycobacterium abscessus]
Length=105
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/102 (92%), Positives = 99/102 (98%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAAL KAAAARRARAELK++LK+GGTNL QVL DAE+DEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALAKAAAARRARAELKEKLKKGGTNLKQVLTDAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLE+F
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLERF 102
>gi|118473958|ref|YP_887366.1| integration host factor [Mycobacterium smegmatis str. MC2 155]
gi|1857251|gb|AAC28246.1| integration host factor [Mycobacterium smegmatis]
gi|118175245|gb|ABK76141.1| integration host factor [Mycobacterium smegmatis str. MC2 155]
Length=105
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/105 (94%), Positives = 101/105 (97%), Gaps = 0/105 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNL QVL DAE+DEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLKQVLTDAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF +
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFDQS 105
>gi|145224323|ref|YP_001135001.1| MihF [Mycobacterium gilvum PYR-GCK]
gi|315444655|ref|YP_004077534.1| hypothetical protein Mspyr1_30820 [Mycobacterium sp. Spyr1]
gi|145216809|gb|ABP46213.1| MihF [Mycobacterium gilvum PYR-GCK]
gi|315262958|gb|ADT99699.1| hypothetical protein Mspyr1_30820 [Mycobacterium sp. Spyr1]
Length=105
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/102 (97%), Positives = 100/102 (99%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNL QVL DAE+DEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLKQVLTDAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 102
>gi|262202271|ref|YP_003273479.1| hypothetical protein Gbro_2344 [Gordonia bronchialis DSM 43247]
gi|262085618|gb|ACY21586.1| hypothetical protein Gbro_2344 [Gordonia bronchialis DSM 43247]
Length=104
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/104 (94%), Positives = 102/104 (99%), Gaps = 0/104 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELK+RLKRGGT+L QVLKDAE+DE+LGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKERLKRGGTDLKQVLKDAENDEILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 189
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF S
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFSS 104
>gi|312139571|ref|YP_004006907.1| integration host factor ihf [Rhodococcus equi 103S]
gi|325672545|ref|ZP_08152241.1| integration host factor MihF [Rhodococcus equi ATCC 33707]
gi|311888910|emb|CBH48223.1| integration host factor Ihf [Rhodococcus equi 103S]
gi|325556422|gb|EGD26088.1| integration host factor MihF [Rhodococcus equi ATCC 33707]
Length=106
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/102 (92%), Positives = 100/102 (99%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAAR+ARAELK+RLKRGGT+L QVLKDAE DE+LGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARKARAELKERLKRGGTDLKQVLKDAEEDEILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALL++F
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLQRF 102
>gi|300781108|ref|ZP_07090962.1| integration host factor MihF [Corynebacterium genitalium ATCC
33030]
gi|300532815|gb|EFK53876.1| integration host factor MihF [Corynebacterium genitalium ATCC
33030]
Length=106
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/103 (76%), Positives = 88/103 (86%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALP+LT EQR AL KAA AR+ RAELK LKRG T+L QVL AESDE++GK KVSAL
Sbjct 1 MALPELTPEQRQEALAKAAEARKQRAELKASLKRGDTDLKQVLDKAESDEIIGKTKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEA+PKVGKVKA+EIM ELEIA TRRLRGLGDRQR+ALLE+FG
Sbjct 61 LEAMPKVGKVKAREIMEELEIAQTRRLRGLGDRQRRALLERFG 103
>gi|226306494|ref|YP_002766454.1| hypothetical protein RER_30070 [Rhodococcus erythropolis PR4]
gi|229493489|ref|ZP_04387274.1| integration host factor [Rhodococcus erythropolis SK121]
gi|226185611|dbj|BAH33715.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229319450|gb|EEN85286.1| integration host factor [Rhodococcus erythropolis SK121]
Length=106
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/102 (92%), Positives = 99/102 (98%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAAR+ARAELK+RLKRGGT+L QVLKDAE +E+LGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARKARAELKERLKRGGTDLKQVLKDAEDNEILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALL KF
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLTKF 102
>gi|111024104|ref|YP_707076.1| integration host factor [Rhodococcus jostii RHA1]
gi|226366344|ref|YP_002784127.1| hypothetical protein ROP_69350 [Rhodococcus opacus B4]
gi|110823634|gb|ABG98918.1| probable integration host factor [Rhodococcus jostii RHA1]
gi|226244834|dbj|BAH55182.1| hypothetical protein [Rhodococcus opacus B4]
Length=106
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/102 (92%), Positives = 99/102 (98%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAAR+ARAELK+RLKRGGT+L QVLKDAE DE+LGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARKARAELKERLKRGGTDLKQVLKDAEDDEILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALL +F
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLARF 102
>gi|319950539|ref|ZP_08024449.1| integration host factor Ihf [Dietzia cinnamea P4]
gi|319435789|gb|EFV90999.1| integration host factor Ihf [Dietzia cinnamea P4]
Length=107
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/102 (94%), Positives = 101/102 (99%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELK+RLKRGGT+L QVLKDAESDE+LGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKERLKRGGTDLKQVLKDAESDEILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQR+ALLE+F
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRRALLERF 102
>gi|326382163|ref|ZP_08203855.1| integration host factor MihF [Gordonia neofelifaecis NRRL B-59395]
gi|326198893|gb|EGD56075.1| integration host factor MihF [Gordonia neofelifaecis NRRL B-59395]
Length=81
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/80 (90%), Positives = 76/80 (95%), Gaps = 0/80 (0%)
Query 110 RAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSALLEALPKVGKVKAQEIMTELEIAPT 169
RAELK+RLK GGTNL QVL DAE+DE+LGKMKVSALLEALPKVGKVKAQEIMTELEIAPT
Sbjct 2 RAELKNRLKSGGTNLQQVLADAENDEILGKMKVSALLEALPKVGKVKAQEIMTELEIAPT 61
Query 170 RRLRGLGDRQRKALLEKFGS 189
RR+RGLGDRQRKALLEKF S
Sbjct 62 RRVRGLGDRQRKALLEKFSS 81
>gi|296140278|ref|YP_003647521.1| integration host factor [Tsukamurella paurometabola DSM 20162]
gi|296028412|gb|ADG79182.1| putative integration host factor [Tsukamurella paurometabola
DSM 20162]
Length=104
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/104 (91%), Positives = 100/104 (97%), Gaps = 0/104 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELK+RLK GGT L QVLKDAESDEVLGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKNRLKSGGTTLQQVLKDAESDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 189
LEALPKVGKVKAQE+MTELEIAPTRR+RGLG+RQRKALLEKF +
Sbjct 61 LEALPKVGKVKAQELMTELEIAPTRRVRGLGERQRKALLEKFSA 104
>gi|213965625|ref|ZP_03393819.1| integration host factor [Corynebacterium amycolatum SK46]
gi|213951784|gb|EEB63172.1| integration host factor [Corynebacterium amycolatum SK46]
Length=108
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/105 (79%), Positives = 95/105 (91%), Gaps = 0/105 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLT EQRAAALEKAA AR+ RAELKD+LKRG T+L +VLK A+ +E++GKMKVSAL
Sbjct 1 MALPQLTPEQRAAALEKAAQARKVRAELKDKLKRGATDLPEVLKQADENEIIGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
LEALPKVGKVKAQ+IM +LEIA TRRLRGLGDRQR+ALLE+FG A
Sbjct 61 LEALPKVGKVKAQDIMNDLEIAQTRRLRGLGDRQRRALLERFGYA 105
>gi|333919528|ref|YP_004493109.1| integration host factor MihF [Amycolicicoccus subflavus DQS3-9A1]
gi|333481749|gb|AEF40309.1| Integration host factor MihF [Amycolicicoccus subflavus DQS3-9A1]
Length=106
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/102 (88%), Positives = 98/102 (97%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAAL KAA ARRARAELKDRLKRGGT+L QVL DAE+DE+LGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALAKAAEARRARAELKDRLKRGGTDLKQVLADAETDEILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALPKVGKVKA++IMTELEIAPTRRLRGLG+RQRKALL++F
Sbjct 61 LEALPKVGKVKARDIMTELEIAPTRRLRGLGERQRKALLQRF 102
>gi|227549203|ref|ZP_03979252.1| integration host factor [Corynebacterium lipophiloflavum DSM
44291]
gi|227078763|gb|EEI16726.1| integration host factor [Corynebacterium lipophiloflavum DSM
44291]
Length=111
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/103 (76%), Positives = 88/103 (86%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
VALP+LTDEQR AL KAA AR+ RAELK LKRG TNL VL A+SDE++GK KVSAL
Sbjct 5 VALPKLTDEQRKEALAKAAEARKQRAELKASLKRGDTNLKDVLDKADSDEIIGKTKVSAL 64
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEA+PKVGKVKA+EIM ELEIA TRRLRGLG+RQR+ALLE+FG
Sbjct 65 LEAMPKVGKVKAREIMEELEIAQTRRLRGLGERQRRALLERFG 107
>gi|340794467|ref|YP_004759930.1| IHF DNA-binding transcription regulator [Corynebacterium variabile
DSM 44702]
gi|340534377|gb|AEK36857.1| IHF DNA-binding transcription regulator [Corynebacterium variabile
DSM 44702]
Length=106
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/103 (81%), Positives = 96/103 (94%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLT EQRA AL+KAA AR+ARAELK++LKRGGT+L +VL A++D ++GKMKVSAL
Sbjct 1 MALPQLTPEQRAEALKKAAEARKARAELKEQLKRGGTDLKEVLAKADTDPIIGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQR+ALLE+FG
Sbjct 61 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRRALLERFG 103
>gi|296394694|ref|YP_003659578.1| MihF protein [Segniliparus rotundus DSM 44985]
gi|296181841|gb|ADG98747.1| MihF [Segniliparus rotundus DSM 44985]
Length=104
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/104 (81%), Positives = 95/104 (92%), Gaps = 0/104 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTD QR AAL+KAAAAR+ARAELK++LK+G L++VL DAE D+VLGKMKVSAL
Sbjct 1 MALPQLTDAQRKAALDKAAAARKARAELKEKLKQGKVKLSKVLADAEKDDVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 189
LE+LPKVGKVKAQE MTELEIAPTRRLRGLG+RQRKALL KFGS
Sbjct 61 LESLPKVGKVKAQEAMTELEIAPTRRLRGLGERQRKALLAKFGS 104
>gi|317505990|ref|ZP_07963822.1| integration host factor MihF [Segniliparus rugosus ATCC BAA-974]
gi|316255766|gb|EFV15004.1| integration host factor MihF [Segniliparus rugosus ATCC BAA-974]
Length=104
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/103 (82%), Positives = 95/103 (93%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQR AAL+KAAAAR+ARAELK++LK+G L +VL+DAE D+VLGKMKVSAL
Sbjct 1 MALPQLTDEQRKAALDKAAAARKARAELKEKLKQGKVKLAKVLEDAEQDDVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LE+LPKVGKVKAQE MTELEIAPTRRLRGLG+RQRKALL KFG
Sbjct 61 LESLPKVGKVKAQEAMTELEIAPTRRLRGLGERQRKALLAKFG 103
>gi|54025587|ref|YP_119829.1| putative integration host factor [Nocardia farcinica IFM 10152]
gi|54017095|dbj|BAD58465.1| putative integration host factor [Nocardia farcinica IFM 10152]
Length=106
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/102 (89%), Positives = 97/102 (96%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAALEKAAAARRARAELK+RLKRGGT+L VL DAE+DE+LGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALEKAAAARRARAELKERLKRGGTDLKSVLADAETDEILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALPKVGKVKA EIM+ELEIAPTRRLRGLGDRQRKALL +F
Sbjct 61 LEALPKVGKVKAAEIMSELEIAPTRRLRGLGDRQRKALLARF 102
>gi|237785579|ref|YP_002906284.1| putative IHF family transcriptional regulator [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758491|gb|ACR17741.1| putative transcriptional regulator, IHF family [Corynebacterium
kroppenstedtii DSM 44385]
Length=108
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/103 (82%), Positives = 95/103 (93%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLT EQRAAALEKAA AR+ARAELK++LK+G T+L VLK A+ DE+LGKMKVSAL
Sbjct 1 MALPQLTPEQRAAALEKAAQARKARAELKEKLKKGETDLQAVLKKADEDEILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEALPKVGKVKAQEIM ELEIAPTRRLRGLG+RQR+ALLE+FG
Sbjct 61 LEALPKVGKVKAQEIMKELEIAPTRRLRGLGERQRRALLERFG 103
>gi|172040651|ref|YP_001800365.1| putative integration host factor [Corynebacterium urealyticum
DSM 7109]
gi|171851955|emb|CAQ04931.1| putative integration host factor [Corynebacterium urealyticum
DSM 7109]
Length=108
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/103 (79%), Positives = 95/103 (93%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLT EQRA AL+KAA AR+ARAEL+++LKRGGT+L QVLKDAE+D +LGKMKVSAL
Sbjct 1 MALPQLTPEQRAEALKKAAEARKARAELREKLKRGGTDLQQVLKDAETDPILGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
L +LPKVGK+KA+EIM +LEIAPTRRLRGLGDRQR+ALLE FG
Sbjct 61 LVSLPKVGKIKAEEIMNQLEIAPTRRLRGLGDRQRRALLEHFG 103
>gi|334563391|ref|ZP_08516382.1| integration host factor ihf [Corynebacterium bovis DSM 20582]
Length=101
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/98 (84%), Positives = 93/98 (95%), Gaps = 0/98 (0%)
Query 91 LTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSALLEALP 150
+T EQRA AL+KAA AR+ARAELK++LKRGGT+L +VLKDA+SD +LGKMKVSALLEALP
Sbjct 1 MTPEQRAEALKKAAEARKARAELKEKLKRGGTDLKKVLKDADSDPILGKMKVSALLEALP 60
Query 151 KVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
KVGKVKAQEIMTELEIAPTRRLRGLGDRQR+ALLE+FG
Sbjct 61 KVGKVKAQEIMTELEIAPTRRLRGLGDRQRRALLERFG 98
>gi|68536097|ref|YP_250802.1| putative integration host factor [Corynebacterium jeikeium K411]
gi|260578792|ref|ZP_05846699.1| integration host factor MihF [Corynebacterium jeikeium ATCC 43734]
gi|68263696|emb|CAI37184.1| putative integration host factor [Corynebacterium jeikeium K411]
gi|258603090|gb|EEW16360.1| integration host factor MihF [Corynebacterium jeikeium ATCC 43734]
Length=106
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/103 (81%), Positives = 96/103 (94%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQRAAAL+KAA AR+ARAEL+++LKRGGT+L QVLKDAE+DE LGKMKVSAL
Sbjct 1 MALPQLTDEQRAAALKKAAEARKARAELREKLKRGGTDLKQVLKDAETDETLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
L +LPKVGKVKA+EIM +LEIA TRR+RGLGDRQR+ALLE FG
Sbjct 61 LVSLPKVGKVKAKEIMEQLEIAETRRIRGLGDRQRRALLEHFG 103
>gi|296117972|ref|ZP_06836555.1| mIHF protein [Corynebacterium ammoniagenes DSM 20306]
gi|295969203|gb|EFG82445.1| mIHF protein [Corynebacterium ammoniagenes DSM 20306]
Length=112
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/103 (77%), Positives = 89/103 (87%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
VALP+LTDEQR AL KAA AR+ARAELK LKRG T L VL+ AE+DE++GK KVSAL
Sbjct 7 VALPKLTDEQRKQALAKAAEARKARAELKASLKRGDTTLKDVLEKAETDEIIGKTKVSAL 66
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEALPKVGKVKA+EIM +LEIA TRRLRGLGDRQR+ALLE+FG
Sbjct 67 LEALPKVGKVKAREIMEDLEIAQTRRLRGLGDRQRRALLERFG 109
>gi|325001016|ref|ZP_08122128.1| hypothetical protein PseP1_19722 [Pseudonocardia sp. P1]
Length=104
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/104 (85%), Positives = 97/104 (94%), Gaps = 0/104 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLT+EQRAAALEKAAAARRARAELKDRLKRGGT L +VLK AE+DEVLGKMKVSAL
Sbjct 1 MALPQLTEEQRAAALEKAAAARRARAELKDRLKRGGTTLEEVLKKAETDEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGS 189
LEALP VGKV+AQ+IM ELEIA +RRLRGLGDRQRKALLE++ S
Sbjct 61 LEALPNVGKVRAQQIMEELEIASSRRLRGLGDRQRKALLERYPS 104
>gi|225021356|ref|ZP_03710548.1| hypothetical protein CORMATOL_01375 [Corynebacterium matruchotii
ATCC 33806]
gi|224945738|gb|EEG26947.1| hypothetical protein CORMATOL_01375 [Corynebacterium matruchotii
ATCC 33806]
Length=136
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/105 (76%), Positives = 91/105 (87%), Gaps = 0/105 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
VALPQLTDEQR AL KAA AR+ARAELK++LKRG +L +VL A SDE++GK KVSAL
Sbjct 30 VALPQLTDEQRKEALAKAAEARKARAELKEQLKRGDISLKEVLAKASSDEIIGKTKVSAL 89
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFGSA 190
LE+LPKVGKVKA+EIM ELEIA TRRLRGLGDRQR+ALLE+FG +
Sbjct 90 LESLPKVGKVKAKEIMDELEIAQTRRLRGLGDRQRRALLERFGFS 134
>gi|145295729|ref|YP_001138550.1| hypothetical protein cgR_1656 [Corynebacterium glutamicum R]
gi|140845649|dbj|BAF54648.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044946|gb|EGV40620.1| hypothetical protein CgS9114_06470 [Corynebacterium glutamicum
S9114]
Length=106
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/103 (80%), Positives = 91/103 (89%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQR AAL KAA AR+ARAELK+ LKRG TNL +VL AESDE++GK KVSAL
Sbjct 1 MALPQLTDEQRKAALAKAAEARKARAELKENLKRGNTNLKEVLDKAESDEIIGKTKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEALPKVGKVKA+EIM EL IA TRRLRGLGDRQR+ALLE+FG
Sbjct 61 LEALPKVGKVKAKEIMDELGIAQTRRLRGLGDRQRRALLERFG 103
>gi|300784660|ref|YP_003764951.1| integration host factor [Amycolatopsis mediterranei U32]
gi|298256325|gb|ADI71434.1| putative integration host factor [Amycolatopsis orientalis subsp.
vinearia]
gi|299794174|gb|ADJ44549.1| putative integration host factor [Amycolatopsis mediterranei
U32]
gi|340526083|gb|AEK41288.1| integration host factor [Amycolatopsis mediterranei S699]
Length=105
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/102 (81%), Positives = 91/102 (90%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLT+EQRAAALEKAAAAR+ RAELK+RLKRGGT L VLK AE +EVLGKMKVSAL
Sbjct 1 MALPQLTEEQRAAALEKAAAARKIRAELKERLKRGGTTLVDVLKQAEENEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALP VGKV+AQ+ M LEIAP+RRLRGLGDRQRKALL +F
Sbjct 61 LEALPGVGKVRAQQTMERLEIAPSRRLRGLGDRQRKALLAEF 102
>gi|19552819|ref|NP_600821.1| hypothetical protein NCgl1545 [Corynebacterium glutamicum ATCC
13032]
gi|62390490|ref|YP_225892.1| hypothetical protein cg1811 [Corynebacterium glutamicum ATCC
13032]
gi|21324376|dbj|BAB99000.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|41325827|emb|CAF21616.1| putative integration host factor cIHF [Corynebacterium glutamicum
ATCC 13032]
Length=106
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/103 (80%), Positives = 91/103 (89%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQR AAL KAA AR+ARAELK+ LKRG TNL +VL AESDE++GK KVSAL
Sbjct 1 MALPQLTDEQRKAALAKAAEARKARAELKENLKRGNTNLREVLDKAESDEIIGKTKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEALPKVGKVKA+EIM EL IA TRRLRGLGDRQR+ALLE+FG
Sbjct 61 LEALPKVGKVKAKEIMDELGIAQTRRLRGLGDRQRRALLERFG 103
>gi|25028283|ref|NP_738337.1| hypothetical protein CE1727 [Corynebacterium efficiens YS-314]
gi|259507341|ref|ZP_05750241.1| integration host factor MihF [Corynebacterium efficiens YS-314]
gi|23493567|dbj|BAC18537.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259165052|gb|EEW49606.1| integration host factor MihF [Corynebacterium efficiens YS-314]
Length=106
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/103 (79%), Positives = 91/103 (89%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQR AAL KAA AR+ARAELK+ LKRG TNL +VL AE+DE++GK KVSAL
Sbjct 1 MALPQLTDEQRKAALAKAAEARKARAELKENLKRGNTNLKEVLDKAETDEIIGKTKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEALPKVGKVKA+EIM EL IA TRRLRGLGDRQR+ALLE+FG
Sbjct 61 LEALPKVGKVKAKEIMDELGIAQTRRLRGLGDRQRRALLERFG 103
>gi|227833005|ref|YP_002834712.1| putative integration host factor [Corynebacterium aurimucosum
ATCC 700975]
gi|262182507|ref|ZP_06041928.1| putative integration host factor [Corynebacterium aurimucosum
ATCC 700975]
gi|227454021|gb|ACP32774.1| putative integration host factor [Corynebacterium aurimucosum
ATCC 700975]
Length=106
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/103 (77%), Positives = 91/103 (89%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALP+LTDEQR AL KAA AR+ARAELK LKRG TNL +VL+ AE+DE++GK KVSAL
Sbjct 1 MALPKLTDEQRKEALAKAAEARKARAELKAALKRGETNLQEVLEKAETDEIIGKTKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEALPKVGKVKA+EIM +LEIA TRRLRGLGDRQR+ALLE+FG
Sbjct 61 LEALPKVGKVKAKEIMEDLEIAQTRRLRGLGDRQRRALLERFG 103
>gi|305681277|ref|ZP_07404084.1| putative integration host factor MihF [Corynebacterium matruchotii
ATCC 14266]
gi|305659482|gb|EFM48982.1| putative integration host factor MihF [Corynebacterium matruchotii
ATCC 14266]
Length=107
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/103 (76%), Positives = 90/103 (88%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLTDEQR AL KAA AR+ARAELK++LKRG +L +VL A SDE++GK KVSAL
Sbjct 1 MALPQLTDEQRKEALAKAAEARKARAELKEQLKRGDISLKEVLAKASSDEIIGKTKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LE+LPKVGKVKA+EIM ELEIA TRRLRGLGDRQR+ALLE+FG
Sbjct 61 LESLPKVGKVKAKEIMDELEIAQTRRLRGLGDRQRRALLERFG 103
>gi|302525871|ref|ZP_07278213.1| integration host factor [Streptomyces sp. AA4]
gi|302434766|gb|EFL06582.1| integration host factor [Streptomyces sp. AA4]
Length=105
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/102 (82%), Positives = 91/102 (90%), Gaps = 0/102 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALPQLT+EQRAAALEKAAAARR RAELK+RLKRGGT L VLK AE +EVLGKMKVSAL
Sbjct 1 MALPQLTEEQRAAALEKAAAARRIRAELKERLKRGGTTLVDVLKQAEENEVLGKMKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKF 187
LEALP VGKV+AQ+ M LEIAP+RRLRGLGDRQRKALL +F
Sbjct 61 LEALPGVGKVRAQQTMERLEIAPSRRLRGLGDRQRKALLAEF 102
>gi|227504410|ref|ZP_03934459.1| integration host factor [Corynebacterium striatum ATCC 6940]
gi|227199058|gb|EEI79106.1| integration host factor [Corynebacterium striatum ATCC 6940]
Length=106
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/103 (77%), Positives = 89/103 (87%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALP+LTDEQR AL KAA AR+ARAELK LKRG TNL VL AE+DE++GK KVSAL
Sbjct 1 MALPKLTDEQRKEALAKAAEARKARAELKAALKRGETNLKDVLDKAETDEIIGKTKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LEALPKVGKVKA+EIM +LEIA TRRLRGLGDRQR+ALLE+FG
Sbjct 61 LEALPKVGKVKAKEIMEDLEIAQTRRLRGLGDRQRRALLERFG 103
>gi|337290850|ref|YP_004629871.1| integration host factor [Corynebacterium ulcerans BR-AD22]
gi|334696964|gb|AEG81761.1| corynebacterial integration host factor [Corynebacterium ulcerans
809]
gi|334699156|gb|AEG83952.1| corynebacterial integration host factor [Corynebacterium ulcerans
BR-AD22]
Length=107
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/103 (75%), Positives = 89/103 (87%), Gaps = 0/103 (0%)
Query 86 VALPQLTDEQRAAALEKAAAARRARAELKDRLKRGGTNLTQVLKDAESDEVLGKMKVSAL 145
+ALP+LTDEQR AL KAA AR+ARAELK++LKRG L +VL A SDE++GK KVSAL
Sbjct 1 MALPKLTDEQRKEALAKAAEARKARAELKEQLKRGDITLKEVLNKASSDEIIGKTKVSAL 60
Query 146 LEALPKVGKVKAQEIMTELEIAPTRRLRGLGDRQRKALLEKFG 188
LE+LPKVGKVKA+EIM ELEIA TRRLRGLGDRQR+ALLE+FG
Sbjct 61 LESLPKVGKVKAKEIMEELEIAQTRRLRGLGDRQRRALLERFG 103
Lambda K H
0.318 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 190262535070
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40