BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1390
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840849|ref|NP_335886.1| DNA-directed RNA polymerase subunit... 221 2e-56
gi|15608529|ref|NP_215906.1| DNA-directed RNA polymerase subunit... 218 2e-55
gi|183982216|ref|YP_001850507.1| DNA-directed RNA polymerase (om... 204 3e-51
gi|118617404|ref|YP_905736.1| DNA-directed RNA polymerase subuni... 204 4e-51
gi|15827198|ref|NP_301461.1| DNA-directed RNA polymerase subunit... 200 6e-50
gi|296170744|ref|ZP_06852316.1| DNA-directed RNA polymerase subu... 199 8e-50
gi|342858672|ref|ZP_08715327.1| DNA-directed RNA polymerase subu... 196 1e-48
gi|118463858|ref|YP_882566.1| DNA-directed RNA polymerase subuni... 195 2e-48
gi|254821095|ref|ZP_05226096.1| DNA-directed RNA polymerase subu... 193 6e-48
gi|41407222|ref|NP_960058.1| DNA-directed RNA polymerase subunit... 193 8e-48
gi|240172960|ref|ZP_04751618.1| DNA-directed RNA polymerase subu... 191 3e-47
gi|333990946|ref|YP_004523560.1| DNA-directed RNA polymerase sub... 174 5e-42
gi|108799338|ref|YP_639535.1| DNA-directed RNA polymerase subuni... 173 7e-42
gi|226366346|ref|YP_002784129.1| DNA-directed RNA polymerase ome... 172 1e-41
gi|111024106|ref|YP_707078.1| DNA-directed RNA polymerase omega ... 171 3e-41
gi|120403652|ref|YP_953481.1| DNA-directed RNA polymerase subuni... 170 5e-41
gi|145224321|ref|YP_001134999.1| DNA-directed RNA polymerase sub... 167 3e-40
gi|118467362|ref|YP_887369.1| DNA-directed RNA polymerase subuni... 167 5e-40
gi|315444653|ref|YP_004077532.1| DNA-directed RNA polymerase sub... 166 1e-39
gi|312139573|ref|YP_004006909.1| DNA-directed RNA polymerase ome... 164 3e-39
gi|326382165|ref|ZP_08203857.1| DNA-directed RNA polymerase subu... 162 2e-38
gi|169629906|ref|YP_001703555.1| DNA-directed RNA polymerase sub... 161 3e-38
gi|226306496|ref|YP_002766456.1| DNA-directed RNA polymerase ome... 161 3e-38
gi|262202273|ref|YP_003273481.1| DNA-directed RNA polymerase sub... 160 4e-38
gi|343924556|ref|ZP_08764104.1| DNA-directed RNA polymerase subu... 160 6e-38
gi|54025585|ref|YP_119827.1| DNA-directed RNA polymerase subunit... 159 1e-37
gi|296140276|ref|YP_003647519.1| DNA-directed RNA polymerase sub... 155 3e-36
gi|317505992|ref|ZP_07963824.1| DNA-directed RNA polymerase [Seg... 144 5e-33
gi|333919530|ref|YP_004493111.1| DNA-directed RNA polymerase sub... 143 7e-33
gi|319950537|ref|ZP_08024447.1| DNA-directed RNA polymerase subu... 143 7e-33
gi|331697306|ref|YP_004333545.1| DNA-directed RNA polymerase sub... 142 2e-32
gi|256379244|ref|YP_003102904.1| DNA-directed RNA polymerase sub... 142 2e-32
gi|134098671|ref|YP_001104332.1| DNA-directed RNA polymerase sub... 141 4e-32
gi|325001018|ref|ZP_08122130.1| DNA-directed RNA polymerase subu... 140 8e-32
gi|257055593|ref|YP_003133425.1| DNA-directed RNA polymerase, om... 139 1e-31
gi|296394692|ref|YP_003659576.1| DNA-directed RNA polymerase sub... 139 2e-31
gi|298256327|gb|ADI71436.1| putative DNA-directed RNA polymerase... 138 2e-31
gi|300784662|ref|YP_003764953.1| DNA-directed RNA polymerase sub... 138 2e-31
gi|172040653|ref|YP_001800367.1| DNA-directed RNA polymerase sub... 135 2e-30
gi|336325653|ref|YP_004605619.1| DNA-directed RNA polymerase sub... 135 3e-30
gi|302525873|ref|ZP_07278215.1| DNA-directed RNA polymerase, ome... 135 3e-30
gi|334563393|ref|ZP_08516384.1| DNA-directed RNA polymerase subu... 134 3e-30
gi|213965604|ref|ZP_03393798.1| DNA-directed RNA polymerase, ome... 134 5e-30
gi|340794465|ref|YP_004759928.1| DNA-directed RNA polymerase sub... 134 6e-30
gi|260578790|ref|ZP_05846697.1| DNA-directed RNA polymerase subu... 133 7e-30
gi|68536095|ref|YP_250800.1| DNA-directed RNA polymerase subunit... 133 9e-30
gi|258654283|ref|YP_003203439.1| DNA-directed RNA polymerase sub... 127 6e-28
gi|38233913|ref|NP_939680.1| DNA-directed RNA polymerase subunit... 125 2e-27
gi|337290848|ref|YP_004629869.1| DNA-directed RNA polymerase sub... 125 3e-27
gi|296117970|ref|ZP_06836553.1| DNA-directed RNA polymerase, ome... 124 3e-27
>gi|15840849|ref|NP_335886.1| DNA-directed RNA polymerase subunit omega [Mycobacterium tuberculosis
CDC1551]
gi|13881048|gb|AAK45700.1| DNA-directed RNA polymerase, omega subunit, putative [Mycobacterium
tuberculosis CDC1551]
Length=133
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 24 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 83
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct 84 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 133
>gi|15608529|ref|NP_215906.1| DNA-directed RNA polymerase subunit omega [Mycobacterium tuberculosis
H37Rv]
gi|31792584|ref|NP_855077.1| DNA-directed RNA polymerase subunit omega [Mycobacterium bovis
AF2122/97]
gi|121637320|ref|YP_977543.1| DNA-directed RNA polymerase subunit omega [Mycobacterium bovis
BCG str. Pasteur 1173P2]
83 more sequence titles
Length=110
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+SISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
>gi|183982216|ref|YP_001850507.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium
marinum M]
gi|183175542|gb|ACC40652.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium
marinum M]
Length=110
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/110 (93%), Positives = 104/110 (95%), Gaps = 0/110 (0%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE
Sbjct 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110
>gi|118617404|ref|YP_905736.1| DNA-directed RNA polymerase subunit omega [Mycobacterium ulcerans
Agy99]
gi|118569514|gb|ABL04265.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium
ulcerans Agy99]
Length=110
Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/110 (93%), Positives = 104/110 (95%), Gaps = 0/110 (0%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MSIPQSDAPLAAVSAVDQFDPSSGGIGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE
Sbjct 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110
>gi|15827198|ref|NP_301461.1| DNA-directed RNA polymerase subunit omega [Mycobacterium leprae
TN]
gi|221229676|ref|YP_002503092.1| DNA-directed RNA polymerase subunit omega [Mycobacterium leprae
Br4923]
gi|13959467|sp|Q9CCQ6.1|RPOZ_MYCLE RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|254809252|sp|B8ZUM0.1|RPOZ_MYCLB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|13092746|emb|CAC30050.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932783|emb|CAR70635.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=110
Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (95%), Gaps = 0/110 (0%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+SI QS+ SL+AV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE
Sbjct 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110
>gi|296170744|ref|ZP_06852316.1| DNA-directed RNA polymerase subunit omega [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894559|gb|EFG74296.1| DNA-directed RNA polymerase subunit omega [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=108
Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/110 (91%), Positives = 105/110 (96%), Gaps = 2/110 (1%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
++I QSDA+LAAVP D+FDPS+G GGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MTIPQSDAALAAVP--DRFDPSTGGHGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 58
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct 59 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 108
>gi|342858672|ref|ZP_08715327.1| DNA-directed RNA polymerase subunit omega [Mycobacterium colombiense
CECT 3035]
gi|342134376|gb|EGT87556.1| DNA-directed RNA polymerase subunit omega [Mycobacterium colombiense
CECT 3035]
Length=108
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/110 (90%), Positives = 103/110 (94%), Gaps = 2/110 (1%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+SI QSDA+LAAVP D+FDPS+G G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MSIPQSDAALAAVP--DRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 58
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct 59 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 108
>gi|118463858|ref|YP_882566.1| DNA-directed RNA polymerase subunit omega [Mycobacterium avium
104]
gi|254775830|ref|ZP_05217346.1| DNA-directed RNA polymerase subunit omega [Mycobacterium avium
subsp. avium ATCC 25291]
gi|166230331|sp|A0QI28.1|RPOZ_MYCA1 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|118165145|gb|ABK66042.1| DNA-directed RNA polymerase omega chain [Mycobacterium avium
104]
Length=108
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/110 (90%), Positives = 103/110 (94%), Gaps = 2/110 (1%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
++ SQSDA+LAAVP D+FDPS+G G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MTNSQSDAALAAVP--DRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 58
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct 59 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 108
>gi|254821095|ref|ZP_05226096.1| DNA-directed RNA polymerase subunit omega [Mycobacterium intracellulare
ATCC 13950]
Length=108
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 98/110 (90%), Positives = 103/110 (94%), Gaps = 2/110 (1%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
++I QSDA+LAAVP D+FD S+GA G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MTIPQSDAALAAVP--DRFDLSAGAPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 58
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct 59 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 108
>gi|41407222|ref|NP_960058.1| DNA-directed RNA polymerase subunit omega [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|81571409|sp|Q741G7.1|RPOZ_MYCPA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|41395573|gb|AAS03441.1| hypothetical protein MAP_1124 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461631|gb|EGO40496.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium avium
subsp. paratuberculosis S397]
Length=108
Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 97/110 (89%), Positives = 103/110 (94%), Gaps = 2/110 (1%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
++ SQSDA+LAAV +D+FDPS+G G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MTNSQSDAALAAV--LDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 58
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct 59 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 108
>gi|240172960|ref|ZP_04751618.1| DNA-directed RNA polymerase subunit omega [Mycobacterium kansasii
ATCC 12478]
Length=109
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/110 (90%), Positives = 100/110 (91%), Gaps = 1/110 (0%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+SI QSDA LA A DQFDP+S G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct 1 MSIPQSDAPLAGS-ASDQFDPASAGIGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 59
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct 60 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 109
>gi|333990946|ref|YP_004523560.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp.
JDM601]
gi|333486914|gb|AEF36306.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium
sp. JDM601]
Length=108
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/111 (82%), Positives = 98/111 (89%), Gaps = 4/111 (3%)
Query 1 VSISQSDASLAAVPAVD-QFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAK 59
+S SQ+DA+ + PA D +FDP+ GGYDTPLGITNPPIDELL R SSKYALVIYAAK
Sbjct 1 MSTSQADAATIS-PATDAEFDPA--MIGGYDTPLGITNPPIDELLQRASSKYALVIYAAK 57
Query 60 RARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
RARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIH DLLE+TEGE
Sbjct 58 RARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEYTEGE 108
>gi|108799338|ref|YP_639535.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp.
MCS]
gi|119868454|ref|YP_938406.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp.
KMS]
gi|126434996|ref|YP_001070687.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp.
JLS]
gi|108769757|gb|ABG08479.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp.
MCS]
gi|119694543|gb|ABL91616.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp.
KMS]
gi|126234796|gb|ABN98196.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp.
JLS]
Length=107
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/110 (80%), Positives = 93/110 (85%), Gaps = 3/110 (2%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+S +DA L AV D + A+G YDTPLGITNPPIDELLDR SSKYALVIYAAKR
Sbjct 1 MSTPHADAQLTAV---DDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKR 57
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107
>gi|226366346|ref|YP_002784129.1| DNA-directed RNA polymerase omega subunit [Rhodococcus opacus
B4]
gi|254809255|sp|C1B4J5.1|RPOZ_RHOOB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|226244836|dbj|BAH55184.1| DNA-directed RNA polymerase omega subunit [Rhodococcus opacus
B4]
Length=101
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/101 (85%), Positives = 90/101 (90%), Gaps = 0/101 (0%)
Query 10 LAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYN 69
+++ PAV PS GA YDTPLGITNPPIDELL R SSKYALVIYAAKRARQINDYYN
Sbjct 1 MSSTPAVASATPSHGALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYN 60
Query 70 QLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
QLG+GILEYVGPLVEPGLQEKPLSIALREIH+DLLEHTEGE
Sbjct 61 QLGDGILEYVGPLVEPGLQEKPLSIALREIHSDLLEHTEGE 101
>gi|111024106|ref|YP_707078.1| DNA-directed RNA polymerase omega subunit [Rhodococcus jostii
RHA1]
gi|123144027|sp|Q0S0L6.1|RPOZ_RHOSR RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|110823636|gb|ABG98920.1| DNA-directed RNA polymerase omega subunit [Rhodococcus jostii
RHA1]
Length=101
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/101 (84%), Positives = 89/101 (89%), Gaps = 0/101 (0%)
Query 10 LAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYN 69
+++ PA PS GA YDTPLGITNPPIDELL R SSKYALVIYAAKRARQINDYYN
Sbjct 1 MSSTPAAASATPSHGALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYN 60
Query 70 QLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
QLG+GILEYVGPLVEPGLQEKPLSIALREIH+DLLEHTEGE
Sbjct 61 QLGDGILEYVGPLVEPGLQEKPLSIALREIHSDLLEHTEGE 101
>gi|120403652|ref|YP_953481.1| DNA-directed RNA polymerase subunit omega [Mycobacterium vanbaalenii
PYR-1]
gi|166230335|sp|A1T8H5.1|RPOZ_MYCVP RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|119956470|gb|ABM13475.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium vanbaalenii
PYR-1]
Length=104
Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/110 (80%), Positives = 93/110 (85%), Gaps = 6/110 (5%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+S +D LAAV DPS A+ YDTPLGITNPPIDELLDR SSKYALVIYAAKR
Sbjct 1 MSTPHADTRLAAV----DIDPS--AASAYDTPLGITNPPIDELLDRASSKYALVIYAAKR 54
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct 55 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 104
>gi|145224321|ref|YP_001134999.1| DNA-directed RNA polymerase subunit omega [Mycobacterium gilvum
PYR-GCK]
gi|145216807|gb|ABP46211.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium gilvum
PYR-GCK]
Length=107
Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/105 (82%), Positives = 91/105 (87%), Gaps = 6/105 (5%)
Query 6 SDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQIN 65
+D+ LAA DPS A+ YDTPLGITNPPIDELLDR SSKYALVIYAAKRARQIN
Sbjct 9 ADSRLAAA----DIDPS--AASAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQIN 62
Query 66 DYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
DYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct 63 DYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 107
>gi|118467362|ref|YP_887369.1| DNA-directed RNA polymerase subunit omega [Mycobacterium smegmatis
str. MC2 155]
gi|166230333|sp|A0QWT1.1|RPOZ_MYCS2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|62546333|gb|AAX86043.1| DNA-directed RNA polymerase omega subunit [Mycobacterium smegmatis]
gi|118168649|gb|ABK69545.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium smegmatis
str. MC2 155]
Length=107
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 86/110 (79%), Positives = 90/110 (82%), Gaps = 3/110 (2%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+S +DA L A D S A+ YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct 1 MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107
>gi|315444653|ref|YP_004077532.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp.
Spyr1]
gi|315262956|gb|ADT99697.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp.
Spyr1]
Length=99
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/92 (90%), Positives = 85/92 (93%), Gaps = 2/92 (2%)
Query 19 FDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEY 78
DPS A+ YDTPLGITNPPIDELLDR SSKYALVIYAAKRARQINDYYNQLG+GILEY
Sbjct 10 IDPS--AASAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQINDYYNQLGDGILEY 67
Query 79 VGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
VGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct 68 VGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 99
>gi|312139573|ref|YP_004006909.1| DNA-directed RNA polymerase omega subunit rpoz [Rhodococcus equi
103S]
gi|325672543|ref|ZP_08152239.1| DNA-directed RNA polymerase subunit omega [Rhodococcus equi ATCC
33707]
gi|311888912|emb|CBH48225.1| DNA-directed RNA polymerase omega subunit RpoZ [Rhodococcus equi
103S]
gi|325556420|gb|EGD26086.1| DNA-directed RNA polymerase subunit omega [Rhodococcus equi ATCC
33707]
Length=101
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/101 (82%), Positives = 88/101 (88%), Gaps = 0/101 (0%)
Query 10 LAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYN 69
+++ AV GA YDTPLGITNPPIDELL+R SSKYALVIY+AKRARQINDYYN
Sbjct 1 MSSTEAVVSDTAGRGALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYN 60
Query 70 QLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
QLG+GILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct 61 QLGDGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 101
>gi|326382165|ref|ZP_08203857.1| DNA-directed RNA polymerase subunit omega [Gordonia neofelifaecis
NRRL B-59395]
gi|326198895|gb|EGD56077.1| DNA-directed RNA polymerase subunit omega [Gordonia neofelifaecis
NRRL B-59395]
Length=99
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/82 (93%), Positives = 80/82 (98%), Gaps = 0/82 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
YDTPLGITNPPIDELL+R SSKYALVIYAAKRARQINDYYNQL EGILEYVGPLVEPG+Q
Sbjct 18 YDTPLGITNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLAEGILEYVGPLVEPGVQ 77
Query 89 EKPLSIALREIHADLLEHTEGE 110
EKPLSIA+REIH+DLLEHTEGE
Sbjct 78 EKPLSIAMREIHSDLLEHTEGE 99
>gi|169629906|ref|YP_001703555.1| DNA-directed RNA polymerase subunit omega [Mycobacterium abscessus
ATCC 19977]
gi|169241873|emb|CAM62901.1| DNA-directed RNA polymerase omega subunit [Mycobacterium abscessus]
Length=102
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/110 (77%), Positives = 89/110 (81%), Gaps = 8/110 (7%)
Query 1 VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60
+S SQ+D + P D +D DTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct 1 MSTSQTDVIVE--PGTDSYD------AALDTPLGITNPPIDELLARASSKYALVIYAAKR 52
Query 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct 53 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 102
>gi|226306496|ref|YP_002766456.1| DNA-directed RNA polymerase omega chain [Rhodococcus erythropolis
PR4]
gi|229493659|ref|ZP_04387444.1| DNA-directed RNA polymerase, omega subunit [Rhodococcus erythropolis
SK121]
gi|259494507|sp|C0ZZD2.1|RPOZ_RHOE4 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|226185613|dbj|BAH33717.1| DNA-directed RNA polymerase omega chain [Rhodococcus erythropolis
PR4]
gi|229319620|gb|EEN85456.1| DNA-directed RNA polymerase, omega subunit [Rhodococcus erythropolis
SK121]
Length=99
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/83 (94%), Positives = 81/83 (98%), Gaps = 0/83 (0%)
Query 28 GYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGL 87
YDTPLGITNPPIDELL+R SSKYALVIY+AKRARQINDYYNQLG+GILEYVGPLVEPGL
Sbjct 17 AYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEYVGPLVEPGL 76
Query 88 QEKPLSIALREIHADLLEHTEGE 110
QEKPLSIALREIHADLLEHTEGE
Sbjct 77 QEKPLSIALREIHADLLEHTEGE 99
>gi|262202273|ref|YP_003273481.1| DNA-directed RNA polymerase subunit omega [Gordonia bronchialis
DSM 43247]
gi|262085620|gb|ACY21588.1| DNA-directed RNA polymerase, omega subunit [Gordonia bronchialis
DSM 43247]
Length=99
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/83 (92%), Positives = 81/83 (98%), Gaps = 0/83 (0%)
Query 28 GYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGL 87
YDTPLGITNPPID+LL+R SSKYALVIYAAKRARQINDYYNQLG+GILEYVGPLVEPGL
Sbjct 17 AYDTPLGITNPPIDDLLERASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGL 76
Query 88 QEKPLSIALREIHADLLEHTEGE 110
QEKPLSIA+REIH+DLLEHTEGE
Sbjct 77 QEKPLSIAMREIHSDLLEHTEGE 99
>gi|343924556|ref|ZP_08764104.1| DNA-directed RNA polymerase subunit omega [Gordonia alkanivorans
NBRC 16433]
gi|343765491|dbj|GAA11030.1| DNA-directed RNA polymerase subunit omega [Gordonia alkanivorans
NBRC 16433]
Length=99
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/94 (85%), Positives = 85/94 (91%), Gaps = 1/94 (1%)
Query 18 QFDPSSGASG-GYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGIL 76
FD + A YDTPLGITNPPID+LL+R SSKYALVIYAAKRARQINDYYNQLG+GIL
Sbjct 6 NFDITEIADAPAYDTPLGITNPPIDDLLERASSKYALVIYAAKRARQINDYYNQLGDGIL 65
Query 77 EYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
EYVGPLVEPGLQEKPLSIA+REIH+DLLEHTEGE
Sbjct 66 EYVGPLVEPGLQEKPLSIAMREIHSDLLEHTEGE 99
>gi|54025585|ref|YP_119827.1| DNA-directed RNA polymerase subunit omega [Nocardia farcinica
IFM 10152]
gi|81602602|sp|Q5YTM8.1|RPOZ_NOCFA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|54017093|dbj|BAD58463.1| putative RNA polymerase omega subunit [Nocardia farcinica IFM
10152]
Length=91
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/83 (91%), Positives = 81/83 (98%), Gaps = 0/83 (0%)
Query 28 GYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGL 87
YDTP+G+TNPPIDELL+R SSKYALVIYAAKRARQINDYYNQLG+GILEYVGPLVEPGL
Sbjct 9 AYDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGL 68
Query 88 QEKPLSIALREIHADLLEHTEGE 110
QEKPLS+ALREIHADLLEH+EGE
Sbjct 69 QEKPLSVALREIHADLLEHSEGE 91
>gi|296140276|ref|YP_003647519.1| DNA-directed RNA polymerase subunit omega [Tsukamurella paurometabola
DSM 20162]
gi|296028410|gb|ADG79180.1| DNA-directed RNA polymerase, omega subunit [Tsukamurella paurometabola
DSM 20162]
Length=91
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/89 (84%), Positives = 78/89 (88%), Gaps = 0/89 (0%)
Query 22 SSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGP 81
++ YD PLGITNPPIDELLDR SSKYALVIYAAKRARQINDYYN L +GILEYVGP
Sbjct 3 TTSTEAVYDQPLGITNPPIDELLDRTSSKYALVIYAAKRARQINDYYNSLSDGILEYVGP 62
Query 82 LVEPGLQEKPLSIALREIHADLLEHTEGE 110
LVEPGL EKPLSIA+REIH DLLEHTEGE
Sbjct 63 LVEPGLHEKPLSIAMREIHEDLLEHTEGE 91
>gi|317505992|ref|ZP_07963824.1| DNA-directed RNA polymerase [Segniliparus rugosus ATCC BAA-974]
gi|316255768|gb|EFV15006.1| DNA-directed RNA polymerase [Segniliparus rugosus ATCC BAA-974]
Length=90
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/82 (85%), Positives = 74/82 (91%), Gaps = 0/82 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
+D P GITNPPIDELL+ VSSKYALVIY AKRARQINDYY QLGEG+ +YVGPLVEPGLQ
Sbjct 7 FDPPQGITNPPIDELLEHVSSKYALVIYGAKRARQINDYYTQLGEGLFDYVGPLVEPGLQ 66
Query 89 EKPLSIALREIHADLLEHTEGE 110
EKPLSIALREIH LLEHTEG+
Sbjct 67 EKPLSIALREIHEGLLEHTEGQ 88
>gi|333919530|ref|YP_004493111.1| DNA-directed RNA polymerase subunit omega [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481751|gb|AEF40311.1| DNA-directed RNA polymerase subunit omega [Amycolicicoccus subflavus
DQS3-9A1]
Length=97
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/91 (75%), Positives = 78/91 (86%), Gaps = 0/91 (0%)
Query 20 DPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYV 79
D ++ A YD P+G+TNPPIDELL R SSKYALVI+AAKRARQINDYYNQ+G G+LEYV
Sbjct 7 DATASALPVYDPPVGLTNPPIDELLARTSSKYALVIFAAKRARQINDYYNQIGSGMLEYV 66
Query 80 GPLVEPGLQEKPLSIALREIHADLLEHTEGE 110
GPLV+PG+ EKPLSI+LREIH DLL H EGE
Sbjct 67 GPLVDPGMHEKPLSISLREIHGDLLIHNEGE 97
>gi|319950537|ref|ZP_08024447.1| DNA-directed RNA polymerase subunit omega [Dietzia cinnamea P4]
gi|319435787|gb|EFV90997.1| DNA-directed RNA polymerase subunit omega [Dietzia cinnamea P4]
Length=94
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/82 (82%), Positives = 76/82 (93%), Gaps = 0/82 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
YDTP+GITNPPIDELL+R SSKYALVI+AAKRARQIN YYNQ+ EGILEYVGPLV+PGL
Sbjct 13 YDTPIGITNPPIDELLERASSKYALVIFAAKRARQINSYYNQIEEGILEYVGPLVDPGLH 72
Query 89 EKPLSIALREIHADLLEHTEGE 110
EKPL+IALRE+H+DLL+ EGE
Sbjct 73 EKPLTIALRELHSDLLDCAEGE 94
>gi|331697306|ref|YP_004333545.1| DNA-directed RNA polymerase subunit omega [Pseudonocardia dioxanivorans
CB1190]
gi|326951995|gb|AEA25692.1| DNA-directed RNA polymerase subunit omega [Pseudonocardia dioxanivorans
CB1190]
Length=92
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 80/90 (89%), Gaps = 1/90 (1%)
Query 21 PSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVG 80
P +GA G TP GITNPPID+LL +VSSKYALVIYAAKRARQINDYY+QLGEG+LEYVG
Sbjct 4 PLTGAVAG-STPEGITNPPIDDLLGQVSSKYALVIYAAKRARQINDYYSQLGEGLLEYVG 62
Query 81 PLVEPGLQEKPLSIALREIHADLLEHTEGE 110
PLVEPG +EKPLSIA+REI + LLEHTEGE
Sbjct 63 PLVEPGPREKPLSIAMREIQSGLLEHTEGE 92
>gi|256379244|ref|YP_003102904.1| DNA-directed RNA polymerase subunit omega [Actinosynnema mirum
DSM 43827]
gi|255923547|gb|ACU39058.1| DNA-directed RNA polymerase, omega subunit [Actinosynnema mirum
DSM 43827]
Length=92
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/80 (88%), Positives = 76/80 (95%), Gaps = 0/80 (0%)
Query 31 TPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEK 90
+P GITNPPID+LL++VSSKYALVIYAAKRARQINDYY QLGEG+LEYVGPLVEPG +EK
Sbjct 13 SPEGITNPPIDDLLEQVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREK 72
Query 91 PLSIALREIHADLLEHTEGE 110
PLSIALREIHA LLEHTEGE
Sbjct 73 PLSIALREIHAGLLEHTEGE 92
>gi|134098671|ref|YP_001104332.1| DNA-directed RNA polymerase subunit omega [Saccharopolyspora
erythraea NRRL 2338]
gi|291003643|ref|ZP_06561616.1| DNA-directed RNA polymerase subunit omega [Saccharopolyspora
erythraea NRRL 2338]
gi|166230357|sp|A4FBI2.1|RPOZ_SACEN RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|133911294|emb|CAM01407.1| DNA-directed RNA polymerase subunit omega [Saccharopolyspora
erythraea NRRL 2338]
Length=97
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/86 (81%), Positives = 78/86 (91%), Gaps = 0/86 (0%)
Query 25 ASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVE 84
+S + P GITNPPID+LL++VSSKYALVIY+AKRARQINDYY QLGEG+LEYVGPLVE
Sbjct 12 SSPSLNAPEGITNPPIDDLLEQVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVE 71
Query 85 PGLQEKPLSIALREIHADLLEHTEGE 110
PG +EKPLSIALREIHA +LEHTEGE
Sbjct 72 PGPREKPLSIALREIHAGVLEHTEGE 97
>gi|325001018|ref|ZP_08122130.1| DNA-directed RNA polymerase subunit omega [Pseudonocardia sp.
P1]
Length=89
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/88 (78%), Positives = 77/88 (88%), Gaps = 0/88 (0%)
Query 23 SGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPL 82
S + G P GITNPPID+LL +VSSKYALVIYAAKRARQIN+YY+QLGEG+LEYVGPL
Sbjct 2 STPTAGITAPEGITNPPIDDLLGQVSSKYALVIYAAKRARQINEYYSQLGEGLLEYVGPL 61
Query 83 VEPGLQEKPLSIALREIHADLLEHTEGE 110
VEPG +EKPLSIA+REI A +LEHTEGE
Sbjct 62 VEPGAREKPLSIAMREIQAGMLEHTEGE 89
>gi|257055593|ref|YP_003133425.1| DNA-directed RNA polymerase, omega subunit [Saccharomonospora
viridis DSM 43017]
gi|256585465|gb|ACU96598.1| DNA-directed RNA polymerase, omega subunit [Saccharomonospora
viridis DSM 43017]
Length=91
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/77 (90%), Positives = 73/77 (95%), Gaps = 0/77 (0%)
Query 34 GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS 93
GITNPPIDELL++VSSKYALVIYAAKRARQINDYY QLGEG+LEYVGPLVEPG +EK LS
Sbjct 15 GITNPPIDELLEKVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKSLS 74
Query 94 IALREIHADLLEHTEGE 110
IALREIHA LLEHTEGE
Sbjct 75 IALREIHAGLLEHTEGE 91
>gi|296394692|ref|YP_003659576.1| DNA-directed RNA polymerase subunit omega [Segniliparus rotundus
DSM 44985]
gi|296181839|gb|ADG98745.1| DNA-directed RNA polymerase, omega subunit [Segniliparus rotundus
DSM 44985]
Length=89
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/82 (81%), Positives = 72/82 (88%), Gaps = 0/82 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
+D P GITNPPIDELL+ VSSKYALVIY AKRARQINDYY QLGEG+ +YVGPLVEPGLQ
Sbjct 7 FDPPQGITNPPIDELLEHVSSKYALVIYGAKRARQINDYYTQLGEGLFDYVGPLVEPGLQ 66
Query 89 EKPLSIALREIHADLLEHTEGE 110
EKPL+IALREIH LLEH E +
Sbjct 67 EKPLAIALREIHEGLLEHNEAQ 88
>gi|298256327|gb|ADI71436.1| putative DNA-directed RNA polymerase omega subunit [Amycolatopsis
orientalis subsp. vinearia]
Length=89
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/77 (88%), Positives = 73/77 (95%), Gaps = 0/77 (0%)
Query 34 GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS 93
GITNPPID+LL++VSSKYALVIY+AKRARQINDYY QLGEG+LEYVGPLVEPG +EKPLS
Sbjct 13 GITNPPIDDLLEKVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLS 72
Query 94 IALREIHADLLEHTEGE 110
IALREIH LLEHTEGE
Sbjct 73 IALREIHGGLLEHTEGE 89
>gi|300784662|ref|YP_003764953.1| DNA-directed RNA polymerase subunit omega [Amycolatopsis mediterranei
U32]
gi|299794176|gb|ADJ44551.1| DNA-directed RNA polymerase subunit omega [Amycolatopsis mediterranei
U32]
gi|340526085|gb|AEK41290.1| DNA-directed RNA polymerase subunit omega [Amycolatopsis mediterranei
S699]
Length=89
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/77 (88%), Positives = 73/77 (95%), Gaps = 0/77 (0%)
Query 34 GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS 93
GITNPPID+LL++VSSKYALVIY+AKRARQINDYY QLGEG+LEYVGPLVEPG +EKPLS
Sbjct 13 GITNPPIDDLLEKVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLS 72
Query 94 IALREIHADLLEHTEGE 110
IALREIH LLEHTEGE
Sbjct 73 IALREIHGGLLEHTEGE 89
>gi|172040653|ref|YP_001800367.1| DNA-directed RNA polymerase subunit omega [Corynebacterium urealyticum
DSM 7109]
gi|226703114|sp|B1VDN5.1|RPOZ_CORU7 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|171851957|emb|CAQ04933.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium urealyticum
DSM 7109]
Length=93
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/81 (77%), Positives = 72/81 (89%), Gaps = 0/81 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
+D P+GITNPPIDELL +VSSKYAL I+AAKRARQINDY+ + EG+LE+VGPLV P +
Sbjct 13 FDPPVGITNPPIDELLTKVSSKYALAIFAAKRARQINDYFQSIDEGVLEFVGPLVTPEMH 72
Query 89 EKPLSIALREIHADLLEHTEG 109
EKPLSIALREI+ADLLEHTEG
Sbjct 73 EKPLSIALREINADLLEHTEG 93
>gi|336325653|ref|YP_004605619.1| DNA-directed RNA polymerase subunit omega [Corynebacterium resistens
DSM 45100]
gi|336101635|gb|AEI09455.1| DNA-directed RNA polymerase subunit omega [Corynebacterium resistens
DSM 45100]
Length=93
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/81 (77%), Positives = 71/81 (88%), Gaps = 0/81 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
+D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+ + EG+ E+VGPLV P Q
Sbjct 13 FDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDAQ 72
Query 89 EKPLSIALREIHADLLEHTEG 109
EKPLSIALREI+ DLLEHTEG
Sbjct 73 EKPLSIALREINKDLLEHTEG 93
>gi|302525873|ref|ZP_07278215.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp.
AA4]
gi|302434768|gb|EFL06584.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp.
AA4]
Length=89
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/77 (86%), Positives = 72/77 (94%), Gaps = 0/77 (0%)
Query 34 GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS 93
GITNPPI +LL++VSSKYALVIY+AKRARQINDYY QLGEG+LEYVGPLVEPG +EKPLS
Sbjct 13 GITNPPIYDLLEKVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLS 72
Query 94 IALREIHADLLEHTEGE 110
IALREIH LLEHTEGE
Sbjct 73 IALREIHGGLLEHTEGE 89
>gi|334563393|ref|ZP_08516384.1| DNA-directed RNA polymerase subunit omega [Corynebacterium bovis
DSM 20582]
Length=93
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/81 (76%), Positives = 72/81 (89%), Gaps = 0/81 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
+D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+ + +G+ E+VGPLV P +Q
Sbjct 13 FDPPVGITNPPIDELLKKVSSKYALVIFAAKRARQINDYFQTVDDGVFEFVGPLVTPDMQ 72
Query 89 EKPLSIALREIHADLLEHTEG 109
EKPLSIALREI+ DLLEHTEG
Sbjct 73 EKPLSIALREINRDLLEHTEG 93
>gi|213965604|ref|ZP_03393798.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium amycolatum
SK46]
gi|213951763|gb|EEB63151.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium amycolatum
SK46]
Length=92
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/81 (78%), Positives = 72/81 (89%), Gaps = 0/81 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
+D P+GITNPPIDELL + SSKYAL I+AAKRARQINDYY Q+ EG+LEYVGPLV PG+
Sbjct 12 FDPPIGITNPPIDELLGKASSKYALAIFAAKRARQINDYYQQIDEGMLEYVGPLVTPGVA 71
Query 89 EKPLSIALREIHADLLEHTEG 109
EKPLSIALREI+A LL+HTEG
Sbjct 72 EKPLSIALREINAGLLDHTEG 92
>gi|340794465|ref|YP_004759928.1| DNA-directed RNA polymerase subunit omega [Corynebacterium variabile
DSM 44702]
gi|340534375|gb|AEK36855.1| DNA-directed RNA polymerase omega subunit [Corynebacterium variabile
DSM 44702]
Length=93
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/84 (74%), Positives = 73/84 (87%), Gaps = 0/84 (0%)
Query 26 SGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEP 85
S +D P+GITNPPID+LL +VSSKYALVI+AAKRARQIN+Y+ +GEG+ E+VGPLV P
Sbjct 10 STVFDQPIGITNPPIDDLLTKVSSKYALVIFAAKRARQINNYFQNVGEGVFEFVGPLVAP 69
Query 86 GLQEKPLSIALREIHADLLEHTEG 109
+EKPLSIALREI ADLLEHTEG
Sbjct 70 ENKEKPLSIALREIDADLLEHTEG 93
>gi|260578790|ref|ZP_05846697.1| DNA-directed RNA polymerase subunit omega [Corynebacterium jeikeium
ATCC 43734]
gi|258603088|gb|EEW16358.1| DNA-directed RNA polymerase subunit omega [Corynebacterium jeikeium
ATCC 43734]
Length=96
Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/81 (76%), Positives = 71/81 (88%), Gaps = 0/81 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
+D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+ + EG+ E+VGPLV P +
Sbjct 16 FDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDVH 75
Query 89 EKPLSIALREIHADLLEHTEG 109
EKPLSIALREI+ DLLEHTEG
Sbjct 76 EKPLSIALREINRDLLEHTEG 96
>gi|68536095|ref|YP_250800.1| DNA-directed RNA polymerase subunit omega [Corynebacterium jeikeium
K411]
gi|109914411|sp|Q4JVH5.1|RPOZ_CORJK RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|68263694|emb|CAI37182.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium jeikeium
K411]
Length=93
Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/81 (76%), Positives = 71/81 (88%), Gaps = 0/81 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
+D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+ + EG+ E+VGPLV P +
Sbjct 13 FDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDVH 72
Query 89 EKPLSIALREIHADLLEHTEG 109
EKPLSIALREI+ DLLEHTEG
Sbjct 73 EKPLSIALREINRDLLEHTEG 93
>gi|258654283|ref|YP_003203439.1| DNA-directed RNA polymerase subunit omega [Nakamurella multipartita
DSM 44233]
gi|258557508|gb|ACV80450.1| DNA-directed RNA polymerase, omega subunit [Nakamurella multipartita
DSM 44233]
Length=95
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/77 (84%), Positives = 67/77 (88%), Gaps = 0/77 (0%)
Query 34 GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS 93
GIT PPIDELL R SSKY L IYAAKRARQINDYY QLGEG+LEYVGPLVEP +EKPLS
Sbjct 19 GITYPPIDELLTRTSSKYGLSIYAAKRARQINDYYAQLGEGLLEYVGPLVEPLPKEKPLS 78
Query 94 IALREIHADLLEHTEGE 110
IALREI+A LL HTEGE
Sbjct 79 IALREINAGLLTHTEGE 95
>gi|38233913|ref|NP_939680.1| DNA-directed RNA polymerase subunit omega [Corynebacterium diphtheriae
NCTC 13129]
gi|41688613|sp|P60333.1|RPOZ_CORDI RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega subunit;
AltName: Full=Transcriptase subunit omega
gi|38200174|emb|CAE49855.1| Putative DNA-directed RNA polymerase omega chain [Corynebacterium
diphtheriae]
Length=92
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/83 (74%), Positives = 66/83 (80%), Gaps = 0/83 (0%)
Query 27 GGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPG 86
G YD P GIT PPIDELL VSSKYALVI+AAKRARQIN YY Q EG+ E+VGPLV P
Sbjct 10 GVYDAPTGITAPPIDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPE 69
Query 87 LQEKPLSIALREIHADLLEHTEG 109
QEKPLSIA+REI A LL+H EG
Sbjct 70 AQEKPLSIAMREIEAGLLDHEEG 92
>gi|337290848|ref|YP_004629869.1| DNA-directed RNA polymerase subunit omega [Corynebacterium ulcerans
BR-AD22]
gi|334696962|gb|AEG81759.1| DNA-directed RNA polymerase omega subunit [Corynebacterium ulcerans
809]
gi|334699154|gb|AEG83950.1| DNA-directed RNA polymerase omega subunit [Corynebacterium ulcerans
BR-AD22]
Length=92
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/83 (74%), Positives = 66/83 (80%), Gaps = 0/83 (0%)
Query 27 GGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPG 86
G YD P GIT PPID+LL RVSSKYALVI+AAKRARQIN YY Q EG+ E+VGPLV P
Sbjct 10 GVYDAPTGITAPPIDDLLKRVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPE 69
Query 87 LQEKPLSIALREIHADLLEHTEG 109
QEKPLSIALREI LL+H EG
Sbjct 70 AQEKPLSIALREIEQGLLDHEEG 92
>gi|296117970|ref|ZP_06836553.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium ammoniagenes
DSM 20306]
gi|295969201|gb|EFG82443.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium ammoniagenes
DSM 20306]
Length=101
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/81 (75%), Positives = 68/81 (84%), Gaps = 0/81 (0%)
Query 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88
+DTP+GIT+PPIDELL+ VSSKYALVI+AAKRARQIN YY + EG+ E+VGPLV P
Sbjct 18 FDTPIGITSPPIDELLETVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEPG 77
Query 89 EKPLSIALREIHADLLEHTEG 109
EKPLSIALREI A LLEH EG
Sbjct 78 EKPLSIALREIEAGLLEHEEG 98
Lambda K H
0.312 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129022162688
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40