BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1390

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840849|ref|NP_335886.1|  DNA-directed RNA polymerase subunit...   221    2e-56
gi|15608529|ref|NP_215906.1|  DNA-directed RNA polymerase subunit...   218    2e-55
gi|183982216|ref|YP_001850507.1|  DNA-directed RNA polymerase (om...   204    3e-51
gi|118617404|ref|YP_905736.1|  DNA-directed RNA polymerase subuni...   204    4e-51
gi|15827198|ref|NP_301461.1|  DNA-directed RNA polymerase subunit...   200    6e-50
gi|296170744|ref|ZP_06852316.1|  DNA-directed RNA polymerase subu...   199    8e-50
gi|342858672|ref|ZP_08715327.1|  DNA-directed RNA polymerase subu...   196    1e-48
gi|118463858|ref|YP_882566.1|  DNA-directed RNA polymerase subuni...   195    2e-48
gi|254821095|ref|ZP_05226096.1|  DNA-directed RNA polymerase subu...   193    6e-48
gi|41407222|ref|NP_960058.1|  DNA-directed RNA polymerase subunit...   193    8e-48
gi|240172960|ref|ZP_04751618.1|  DNA-directed RNA polymerase subu...   191    3e-47
gi|333990946|ref|YP_004523560.1|  DNA-directed RNA polymerase sub...   174    5e-42
gi|108799338|ref|YP_639535.1|  DNA-directed RNA polymerase subuni...   173    7e-42
gi|226366346|ref|YP_002784129.1|  DNA-directed RNA polymerase ome...   172    1e-41
gi|111024106|ref|YP_707078.1|  DNA-directed RNA polymerase omega ...   171    3e-41
gi|120403652|ref|YP_953481.1|  DNA-directed RNA polymerase subuni...   170    5e-41
gi|145224321|ref|YP_001134999.1|  DNA-directed RNA polymerase sub...   167    3e-40
gi|118467362|ref|YP_887369.1|  DNA-directed RNA polymerase subuni...   167    5e-40
gi|315444653|ref|YP_004077532.1|  DNA-directed RNA polymerase sub...   166    1e-39
gi|312139573|ref|YP_004006909.1|  DNA-directed RNA polymerase ome...   164    3e-39
gi|326382165|ref|ZP_08203857.1|  DNA-directed RNA polymerase subu...   162    2e-38
gi|169629906|ref|YP_001703555.1|  DNA-directed RNA polymerase sub...   161    3e-38
gi|226306496|ref|YP_002766456.1|  DNA-directed RNA polymerase ome...   161    3e-38
gi|262202273|ref|YP_003273481.1|  DNA-directed RNA polymerase sub...   160    4e-38
gi|343924556|ref|ZP_08764104.1|  DNA-directed RNA polymerase subu...   160    6e-38
gi|54025585|ref|YP_119827.1|  DNA-directed RNA polymerase subunit...   159    1e-37
gi|296140276|ref|YP_003647519.1|  DNA-directed RNA polymerase sub...   155    3e-36
gi|317505992|ref|ZP_07963824.1|  DNA-directed RNA polymerase [Seg...   144    5e-33
gi|333919530|ref|YP_004493111.1|  DNA-directed RNA polymerase sub...   143    7e-33
gi|319950537|ref|ZP_08024447.1|  DNA-directed RNA polymerase subu...   143    7e-33
gi|331697306|ref|YP_004333545.1|  DNA-directed RNA polymerase sub...   142    2e-32
gi|256379244|ref|YP_003102904.1|  DNA-directed RNA polymerase sub...   142    2e-32
gi|134098671|ref|YP_001104332.1|  DNA-directed RNA polymerase sub...   141    4e-32
gi|325001018|ref|ZP_08122130.1|  DNA-directed RNA polymerase subu...   140    8e-32
gi|257055593|ref|YP_003133425.1|  DNA-directed RNA polymerase, om...   139    1e-31
gi|296394692|ref|YP_003659576.1|  DNA-directed RNA polymerase sub...   139    2e-31
gi|298256327|gb|ADI71436.1|  putative DNA-directed RNA polymerase...   138    2e-31
gi|300784662|ref|YP_003764953.1|  DNA-directed RNA polymerase sub...   138    2e-31
gi|172040653|ref|YP_001800367.1|  DNA-directed RNA polymerase sub...   135    2e-30
gi|336325653|ref|YP_004605619.1|  DNA-directed RNA polymerase sub...   135    3e-30
gi|302525873|ref|ZP_07278215.1|  DNA-directed RNA polymerase, ome...   135    3e-30
gi|334563393|ref|ZP_08516384.1|  DNA-directed RNA polymerase subu...   134    3e-30
gi|213965604|ref|ZP_03393798.1|  DNA-directed RNA polymerase, ome...   134    5e-30
gi|340794465|ref|YP_004759928.1|  DNA-directed RNA polymerase sub...   134    6e-30
gi|260578790|ref|ZP_05846697.1|  DNA-directed RNA polymerase subu...   133    7e-30
gi|68536095|ref|YP_250800.1|  DNA-directed RNA polymerase subunit...   133    9e-30
gi|258654283|ref|YP_003203439.1|  DNA-directed RNA polymerase sub...   127    6e-28
gi|38233913|ref|NP_939680.1|  DNA-directed RNA polymerase subunit...   125    2e-27
gi|337290848|ref|YP_004629869.1|  DNA-directed RNA polymerase sub...   125    3e-27
gi|296117970|ref|ZP_06836553.1|  DNA-directed RNA polymerase, ome...   124    3e-27


>gi|15840849|ref|NP_335886.1| DNA-directed RNA polymerase subunit omega [Mycobacterium tuberculosis 
CDC1551]
 gi|13881048|gb|AAK45700.1| DNA-directed RNA polymerase, omega subunit, putative [Mycobacterium 
tuberculosis CDC1551]
Length=133

 Score =  221 bits (563),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  24   VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  83

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct  84   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  133


>gi|15608529|ref|NP_215906.1| DNA-directed RNA polymerase subunit omega [Mycobacterium tuberculosis 
H37Rv]
 gi|31792584|ref|NP_855077.1| DNA-directed RNA polymerase subunit omega [Mycobacterium bovis 
AF2122/97]
 gi|121637320|ref|YP_977543.1| DNA-directed RNA polymerase subunit omega [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 83 more sequence titles
 Length=110

 Score =  218 bits (556),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +SISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110


>gi|183982216|ref|YP_001850507.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium 
marinum M]
 gi|183175542|gb|ACC40652.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium 
marinum M]
Length=110

 Score =  204 bits (520),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 102/110 (93%), Positives = 104/110 (95%), Gaps = 0/110 (0%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +SI QSDA LAAV AVDQFDPSSG  G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE
Sbjct  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE  110


>gi|118617404|ref|YP_905736.1| DNA-directed RNA polymerase subunit omega [Mycobacterium ulcerans 
Agy99]
 gi|118569514|gb|ABL04265.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium 
ulcerans Agy99]
Length=110

 Score =  204 bits (519),  Expect = 4e-51, Method: Compositional matrix adjust.
 Identities = 102/110 (93%), Positives = 104/110 (95%), Gaps = 0/110 (0%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +SI QSDA LAAV AVDQFDPSSG  G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MSIPQSDAPLAAVSAVDQFDPSSGGIGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE
Sbjct  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE  110


>gi|15827198|ref|NP_301461.1| DNA-directed RNA polymerase subunit omega [Mycobacterium leprae 
TN]
 gi|221229676|ref|YP_002503092.1| DNA-directed RNA polymerase subunit omega [Mycobacterium leprae 
Br4923]
 gi|13959467|sp|Q9CCQ6.1|RPOZ_MYCLE RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|254809252|sp|B8ZUM0.1|RPOZ_MYCLB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|13092746|emb|CAC30050.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932783|emb|CAR70635.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=110

 Score =  200 bits (508),  Expect = 6e-50, Method: Compositional matrix adjust.
 Identities = 99/110 (90%), Positives = 104/110 (95%), Gaps = 0/110 (0%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +SI QS+ SL+AV AVDQFDPSSG  G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE
Sbjct  61   ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE  110


>gi|296170744|ref|ZP_06852316.1| DNA-directed RNA polymerase subunit omega [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295894559|gb|EFG74296.1| DNA-directed RNA polymerase subunit omega [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=108

 Score =  199 bits (507),  Expect = 8e-50, Method: Compositional matrix adjust.
 Identities = 100/110 (91%), Positives = 105/110 (96%), Gaps = 2/110 (1%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            ++I QSDA+LAAVP  D+FDPS+G  GGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MTIPQSDAALAAVP--DRFDPSTGGHGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  58

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct  59   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  108


>gi|342858672|ref|ZP_08715327.1| DNA-directed RNA polymerase subunit omega [Mycobacterium colombiense 
CECT 3035]
 gi|342134376|gb|EGT87556.1| DNA-directed RNA polymerase subunit omega [Mycobacterium colombiense 
CECT 3035]
Length=108

 Score =  196 bits (497),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 98/110 (90%), Positives = 103/110 (94%), Gaps = 2/110 (1%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +SI QSDA+LAAVP  D+FDPS+G  G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MSIPQSDAALAAVP--DRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  58

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct  59   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE  108


>gi|118463858|ref|YP_882566.1| DNA-directed RNA polymerase subunit omega [Mycobacterium avium 
104]
 gi|254775830|ref|ZP_05217346.1| DNA-directed RNA polymerase subunit omega [Mycobacterium avium 
subsp. avium ATCC 25291]
 gi|166230331|sp|A0QI28.1|RPOZ_MYCA1 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|118165145|gb|ABK66042.1| DNA-directed RNA polymerase omega chain [Mycobacterium avium 
104]
Length=108

 Score =  195 bits (495),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 98/110 (90%), Positives = 103/110 (94%), Gaps = 2/110 (1%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            ++ SQSDA+LAAVP  D+FDPS+G  G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MTNSQSDAALAAVP--DRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  58

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct  59   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE  108


>gi|254821095|ref|ZP_05226096.1| DNA-directed RNA polymerase subunit omega [Mycobacterium intracellulare 
ATCC 13950]
Length=108

 Score =  193 bits (491),  Expect = 6e-48, Method: Compositional matrix adjust.
 Identities = 98/110 (90%), Positives = 103/110 (94%), Gaps = 2/110 (1%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            ++I QSDA+LAAVP  D+FD S+GA G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MTIPQSDAALAAVP--DRFDLSAGAPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  58

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct  59   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE  108


>gi|41407222|ref|NP_960058.1| DNA-directed RNA polymerase subunit omega [Mycobacterium avium 
subsp. paratuberculosis K-10]
 gi|81571409|sp|Q741G7.1|RPOZ_MYCPA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|41395573|gb|AAS03441.1| hypothetical protein MAP_1124 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336461631|gb|EGO40496.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium avium 
subsp. paratuberculosis S397]
Length=108

 Score =  193 bits (490),  Expect = 8e-48, Method: Compositional matrix adjust.
 Identities = 97/110 (89%), Positives = 103/110 (94%), Gaps = 2/110 (1%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            ++ SQSDA+LAAV  +D+FDPS+G  G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MTNSQSDAALAAV--LDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  58

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct  59   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE  108


>gi|240172960|ref|ZP_04751618.1| DNA-directed RNA polymerase subunit omega [Mycobacterium kansasii 
ATCC 12478]
Length=109

 Score =  191 bits (486),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 98/110 (90%), Positives = 100/110 (91%), Gaps = 1/110 (0%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +SI QSDA LA   A DQFDP+S   G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR
Sbjct  1    MSIPQSDAPLAGS-ASDQFDPASAGIGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  59

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct  60   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  109


>gi|333990946|ref|YP_004523560.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp. 
JDM601]
 gi|333486914|gb|AEF36306.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium 
sp. JDM601]
Length=108

 Score =  174 bits (440),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 91/111 (82%), Positives = 98/111 (89%), Gaps = 4/111 (3%)

Query  1    VSISQSDASLAAVPAVD-QFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAK  59
            +S SQ+DA+  + PA D +FDP+    GGYDTPLGITNPPIDELL R SSKYALVIYAAK
Sbjct  1    MSTSQADAATIS-PATDAEFDPA--MIGGYDTPLGITNPPIDELLQRASSKYALVIYAAK  57

Query  60   RARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            RARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIH DLLE+TEGE
Sbjct  58   RARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEYTEGE  108


>gi|108799338|ref|YP_639535.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp. 
MCS]
 gi|119868454|ref|YP_938406.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp. 
KMS]
 gi|126434996|ref|YP_001070687.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp. 
JLS]
 gi|108769757|gb|ABG08479.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp. 
MCS]
 gi|119694543|gb|ABL91616.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp. 
KMS]
 gi|126234796|gb|ABN98196.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp. 
JLS]
Length=107

 Score =  173 bits (439),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 93/110 (85%), Gaps = 3/110 (2%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +S   +DA L AV   D     + A+G YDTPLGITNPPIDELLDR SSKYALVIYAAKR
Sbjct  1    MSTPHADAQLTAV---DDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKR  57

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct  58   ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE  107


>gi|226366346|ref|YP_002784129.1| DNA-directed RNA polymerase omega subunit [Rhodococcus opacus 
B4]
 gi|254809255|sp|C1B4J5.1|RPOZ_RHOOB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|226244836|dbj|BAH55184.1| DNA-directed RNA polymerase omega subunit [Rhodococcus opacus 
B4]
Length=101

 Score =  172 bits (437),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 85/101 (85%), Positives = 90/101 (90%), Gaps = 0/101 (0%)

Query  10   LAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYN  69
            +++ PAV    PS GA   YDTPLGITNPPIDELL R SSKYALVIYAAKRARQINDYYN
Sbjct  1    MSSTPAVASATPSHGALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYN  60

Query  70   QLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            QLG+GILEYVGPLVEPGLQEKPLSIALREIH+DLLEHTEGE
Sbjct  61   QLGDGILEYVGPLVEPGLQEKPLSIALREIHSDLLEHTEGE  101


>gi|111024106|ref|YP_707078.1| DNA-directed RNA polymerase omega subunit [Rhodococcus jostii 
RHA1]
 gi|123144027|sp|Q0S0L6.1|RPOZ_RHOSR RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|110823636|gb|ABG98920.1| DNA-directed RNA polymerase omega subunit [Rhodococcus jostii 
RHA1]
Length=101

 Score =  171 bits (433),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 84/101 (84%), Positives = 89/101 (89%), Gaps = 0/101 (0%)

Query  10   LAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYN  69
            +++ PA     PS GA   YDTPLGITNPPIDELL R SSKYALVIYAAKRARQINDYYN
Sbjct  1    MSSTPAAASATPSHGALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYN  60

Query  70   QLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            QLG+GILEYVGPLVEPGLQEKPLSIALREIH+DLLEHTEGE
Sbjct  61   QLGDGILEYVGPLVEPGLQEKPLSIALREIHSDLLEHTEGE  101


>gi|120403652|ref|YP_953481.1| DNA-directed RNA polymerase subunit omega [Mycobacterium vanbaalenii 
PYR-1]
 gi|166230335|sp|A1T8H5.1|RPOZ_MYCVP RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|119956470|gb|ABM13475.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium vanbaalenii 
PYR-1]
Length=104

 Score =  170 bits (431),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 93/110 (85%), Gaps = 6/110 (5%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +S   +D  LAAV      DPS  A+  YDTPLGITNPPIDELLDR SSKYALVIYAAKR
Sbjct  1    MSTPHADTRLAAV----DIDPS--AASAYDTPLGITNPPIDELLDRASSKYALVIYAAKR  54

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct  55   ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE  104


>gi|145224321|ref|YP_001134999.1| DNA-directed RNA polymerase subunit omega [Mycobacterium gilvum 
PYR-GCK]
 gi|145216807|gb|ABP46211.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium gilvum 
PYR-GCK]
Length=107

 Score =  167 bits (424),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 86/105 (82%), Positives = 91/105 (87%), Gaps = 6/105 (5%)

Query  6    SDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQIN  65
            +D+ LAA       DPS  A+  YDTPLGITNPPIDELLDR SSKYALVIYAAKRARQIN
Sbjct  9    ADSRLAAA----DIDPS--AASAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQIN  62

Query  66   DYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            DYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct  63   DYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE  107


>gi|118467362|ref|YP_887369.1| DNA-directed RNA polymerase subunit omega [Mycobacterium smegmatis 
str. MC2 155]
 gi|166230333|sp|A0QWT1.1|RPOZ_MYCS2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|62546333|gb|AAX86043.1| DNA-directed RNA polymerase omega subunit [Mycobacterium smegmatis]
 gi|118168649|gb|ABK69545.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium smegmatis 
str. MC2 155]
Length=107

 Score =  167 bits (423),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 86/110 (79%), Positives = 90/110 (82%), Gaps = 3/110 (2%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +S   +DA L A    D     S A+  YDTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct  1    MSTPHADAQLNAA---DDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR  57

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct  58   ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE  107


>gi|315444653|ref|YP_004077532.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp. 
Spyr1]
 gi|315262956|gb|ADT99697.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp. 
Spyr1]
Length=99

 Score =  166 bits (419),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 82/92 (90%), Positives = 85/92 (93%), Gaps = 2/92 (2%)

Query  19   FDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEY  78
             DPS  A+  YDTPLGITNPPIDELLDR SSKYALVIYAAKRARQINDYYNQLG+GILEY
Sbjct  10   IDPS--AASAYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQINDYYNQLGDGILEY  67

Query  79   VGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            VGPLVEPGLQEKPLSIA+REIH DLLEHTEGE
Sbjct  68   VGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE  99


>gi|312139573|ref|YP_004006909.1| DNA-directed RNA polymerase omega subunit rpoz [Rhodococcus equi 
103S]
 gi|325672543|ref|ZP_08152239.1| DNA-directed RNA polymerase subunit omega [Rhodococcus equi ATCC 
33707]
 gi|311888912|emb|CBH48225.1| DNA-directed RNA polymerase omega subunit RpoZ [Rhodococcus equi 
103S]
 gi|325556420|gb|EGD26086.1| DNA-directed RNA polymerase subunit omega [Rhodococcus equi ATCC 
33707]
Length=101

 Score =  164 bits (416),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 82/101 (82%), Positives = 88/101 (88%), Gaps = 0/101 (0%)

Query  10   LAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYN  69
            +++  AV       GA   YDTPLGITNPPIDELL+R SSKYALVIY+AKRARQINDYYN
Sbjct  1    MSSTEAVVSDTAGRGALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYN  60

Query  70   QLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            QLG+GILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
Sbjct  61   QLGDGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  101


>gi|326382165|ref|ZP_08203857.1| DNA-directed RNA polymerase subunit omega [Gordonia neofelifaecis 
NRRL B-59395]
 gi|326198895|gb|EGD56077.1| DNA-directed RNA polymerase subunit omega [Gordonia neofelifaecis 
NRRL B-59395]
Length=99

 Score =  162 bits (409),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 76/82 (93%), Positives = 80/82 (98%), Gaps = 0/82 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            YDTPLGITNPPIDELL+R SSKYALVIYAAKRARQINDYYNQL EGILEYVGPLVEPG+Q
Sbjct  18   YDTPLGITNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLAEGILEYVGPLVEPGVQ  77

Query  89   EKPLSIALREIHADLLEHTEGE  110
            EKPLSIA+REIH+DLLEHTEGE
Sbjct  78   EKPLSIAMREIHSDLLEHTEGE  99


>gi|169629906|ref|YP_001703555.1| DNA-directed RNA polymerase subunit omega [Mycobacterium abscessus 
ATCC 19977]
 gi|169241873|emb|CAM62901.1| DNA-directed RNA polymerase omega subunit [Mycobacterium abscessus]
Length=102

 Score =  161 bits (407),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 84/110 (77%), Positives = 89/110 (81%), Gaps = 8/110 (7%)

Query  1    VSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR  60
            +S SQ+D  +   P  D +D         DTPLGITNPPIDELL R SSKYALVIYAAKR
Sbjct  1    MSTSQTDVIVE--PGTDSYD------AALDTPLGITNPPIDELLARASSKYALVIYAAKR  52

Query  61   ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIALREIH DLLEHTEGE
Sbjct  53   ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE  102


>gi|226306496|ref|YP_002766456.1| DNA-directed RNA polymerase omega chain [Rhodococcus erythropolis 
PR4]
 gi|229493659|ref|ZP_04387444.1| DNA-directed RNA polymerase, omega subunit [Rhodococcus erythropolis 
SK121]
 gi|259494507|sp|C0ZZD2.1|RPOZ_RHOE4 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|226185613|dbj|BAH33717.1| DNA-directed RNA polymerase omega chain [Rhodococcus erythropolis 
PR4]
 gi|229319620|gb|EEN85456.1| DNA-directed RNA polymerase, omega subunit [Rhodococcus erythropolis 
SK121]
Length=99

 Score =  161 bits (407),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 78/83 (94%), Positives = 81/83 (98%), Gaps = 0/83 (0%)

Query  28   GYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGL  87
             YDTPLGITNPPIDELL+R SSKYALVIY+AKRARQINDYYNQLG+GILEYVGPLVEPGL
Sbjct  17   AYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEYVGPLVEPGL  76

Query  88   QEKPLSIALREIHADLLEHTEGE  110
            QEKPLSIALREIHADLLEHTEGE
Sbjct  77   QEKPLSIALREIHADLLEHTEGE  99


>gi|262202273|ref|YP_003273481.1| DNA-directed RNA polymerase subunit omega [Gordonia bronchialis 
DSM 43247]
 gi|262085620|gb|ACY21588.1| DNA-directed RNA polymerase, omega subunit [Gordonia bronchialis 
DSM 43247]
Length=99

 Score =  160 bits (406),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 76/83 (92%), Positives = 81/83 (98%), Gaps = 0/83 (0%)

Query  28   GYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGL  87
             YDTPLGITNPPID+LL+R SSKYALVIYAAKRARQINDYYNQLG+GILEYVGPLVEPGL
Sbjct  17   AYDTPLGITNPPIDDLLERASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGL  76

Query  88   QEKPLSIALREIHADLLEHTEGE  110
            QEKPLSIA+REIH+DLLEHTEGE
Sbjct  77   QEKPLSIAMREIHSDLLEHTEGE  99


>gi|343924556|ref|ZP_08764104.1| DNA-directed RNA polymerase subunit omega [Gordonia alkanivorans 
NBRC 16433]
 gi|343765491|dbj|GAA11030.1| DNA-directed RNA polymerase subunit omega [Gordonia alkanivorans 
NBRC 16433]
Length=99

 Score =  160 bits (405),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 79/94 (85%), Positives = 85/94 (91%), Gaps = 1/94 (1%)

Query  18   QFDPSSGASG-GYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGIL  76
             FD +  A    YDTPLGITNPPID+LL+R SSKYALVIYAAKRARQINDYYNQLG+GIL
Sbjct  6    NFDITEIADAPAYDTPLGITNPPIDDLLERASSKYALVIYAAKRARQINDYYNQLGDGIL  65

Query  77   EYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            EYVGPLVEPGLQEKPLSIA+REIH+DLLEHTEGE
Sbjct  66   EYVGPLVEPGLQEKPLSIAMREIHSDLLEHTEGE  99


>gi|54025585|ref|YP_119827.1| DNA-directed RNA polymerase subunit omega [Nocardia farcinica 
IFM 10152]
 gi|81602602|sp|Q5YTM8.1|RPOZ_NOCFA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|54017093|dbj|BAD58463.1| putative RNA polymerase omega subunit [Nocardia farcinica IFM 
10152]
Length=91

 Score =  159 bits (403),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 75/83 (91%), Positives = 81/83 (98%), Gaps = 0/83 (0%)

Query  28   GYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGL  87
             YDTP+G+TNPPIDELL+R SSKYALVIYAAKRARQINDYYNQLG+GILEYVGPLVEPGL
Sbjct  9    AYDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGL  68

Query  88   QEKPLSIALREIHADLLEHTEGE  110
            QEKPLS+ALREIHADLLEH+EGE
Sbjct  69   QEKPLSVALREIHADLLEHSEGE  91


>gi|296140276|ref|YP_003647519.1| DNA-directed RNA polymerase subunit omega [Tsukamurella paurometabola 
DSM 20162]
 gi|296028410|gb|ADG79180.1| DNA-directed RNA polymerase, omega subunit [Tsukamurella paurometabola 
DSM 20162]
Length=91

 Score =  155 bits (391),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 74/89 (84%), Positives = 78/89 (88%), Gaps = 0/89 (0%)

Query  22   SSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGP  81
            ++     YD PLGITNPPIDELLDR SSKYALVIYAAKRARQINDYYN L +GILEYVGP
Sbjct  3    TTSTEAVYDQPLGITNPPIDELLDRTSSKYALVIYAAKRARQINDYYNSLSDGILEYVGP  62

Query  82   LVEPGLQEKPLSIALREIHADLLEHTEGE  110
            LVEPGL EKPLSIA+REIH DLLEHTEGE
Sbjct  63   LVEPGLHEKPLSIAMREIHEDLLEHTEGE  91


>gi|317505992|ref|ZP_07963824.1| DNA-directed RNA polymerase [Segniliparus rugosus ATCC BAA-974]
 gi|316255768|gb|EFV15006.1| DNA-directed RNA polymerase [Segniliparus rugosus ATCC BAA-974]
Length=90

 Score =  144 bits (362),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 69/82 (85%), Positives = 74/82 (91%), Gaps = 0/82 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            +D P GITNPPIDELL+ VSSKYALVIY AKRARQINDYY QLGEG+ +YVGPLVEPGLQ
Sbjct  7    FDPPQGITNPPIDELLEHVSSKYALVIYGAKRARQINDYYTQLGEGLFDYVGPLVEPGLQ  66

Query  89   EKPLSIALREIHADLLEHTEGE  110
            EKPLSIALREIH  LLEHTEG+
Sbjct  67   EKPLSIALREIHEGLLEHTEGQ  88


>gi|333919530|ref|YP_004493111.1| DNA-directed RNA polymerase subunit omega [Amycolicicoccus subflavus 
DQS3-9A1]
 gi|333481751|gb|AEF40311.1| DNA-directed RNA polymerase subunit omega [Amycolicicoccus subflavus 
DQS3-9A1]
Length=97

 Score =  143 bits (361),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 68/91 (75%), Positives = 78/91 (86%), Gaps = 0/91 (0%)

Query  20   DPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYV  79
            D ++ A   YD P+G+TNPPIDELL R SSKYALVI+AAKRARQINDYYNQ+G G+LEYV
Sbjct  7    DATASALPVYDPPVGLTNPPIDELLARTSSKYALVIFAAKRARQINDYYNQIGSGMLEYV  66

Query  80   GPLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            GPLV+PG+ EKPLSI+LREIH DLL H EGE
Sbjct  67   GPLVDPGMHEKPLSISLREIHGDLLIHNEGE  97


>gi|319950537|ref|ZP_08024447.1| DNA-directed RNA polymerase subunit omega [Dietzia cinnamea P4]
 gi|319435787|gb|EFV90997.1| DNA-directed RNA polymerase subunit omega [Dietzia cinnamea P4]
Length=94

 Score =  143 bits (361),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 67/82 (82%), Positives = 76/82 (93%), Gaps = 0/82 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            YDTP+GITNPPIDELL+R SSKYALVI+AAKRARQIN YYNQ+ EGILEYVGPLV+PGL 
Sbjct  13   YDTPIGITNPPIDELLERASSKYALVIFAAKRARQINSYYNQIEEGILEYVGPLVDPGLH  72

Query  89   EKPLSIALREIHADLLEHTEGE  110
            EKPL+IALRE+H+DLL+  EGE
Sbjct  73   EKPLTIALRELHSDLLDCAEGE  94


>gi|331697306|ref|YP_004333545.1| DNA-directed RNA polymerase subunit omega [Pseudonocardia dioxanivorans 
CB1190]
 gi|326951995|gb|AEA25692.1| DNA-directed RNA polymerase subunit omega [Pseudonocardia dioxanivorans 
CB1190]
Length=92

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 80/90 (89%), Gaps = 1/90 (1%)

Query  21   PSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVG  80
            P +GA  G  TP GITNPPID+LL +VSSKYALVIYAAKRARQINDYY+QLGEG+LEYVG
Sbjct  4    PLTGAVAG-STPEGITNPPIDDLLGQVSSKYALVIYAAKRARQINDYYSQLGEGLLEYVG  62

Query  81   PLVEPGLQEKPLSIALREIHADLLEHTEGE  110
            PLVEPG +EKPLSIA+REI + LLEHTEGE
Sbjct  63   PLVEPGPREKPLSIAMREIQSGLLEHTEGE  92


>gi|256379244|ref|YP_003102904.1| DNA-directed RNA polymerase subunit omega [Actinosynnema mirum 
DSM 43827]
 gi|255923547|gb|ACU39058.1| DNA-directed RNA polymerase, omega subunit [Actinosynnema mirum 
DSM 43827]
Length=92

 Score =  142 bits (357),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 70/80 (88%), Positives = 76/80 (95%), Gaps = 0/80 (0%)

Query  31   TPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEK  90
            +P GITNPPID+LL++VSSKYALVIYAAKRARQINDYY QLGEG+LEYVGPLVEPG +EK
Sbjct  13   SPEGITNPPIDDLLEQVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREK  72

Query  91   PLSIALREIHADLLEHTEGE  110
            PLSIALREIHA LLEHTEGE
Sbjct  73   PLSIALREIHAGLLEHTEGE  92


>gi|134098671|ref|YP_001104332.1| DNA-directed RNA polymerase subunit omega [Saccharopolyspora 
erythraea NRRL 2338]
 gi|291003643|ref|ZP_06561616.1| DNA-directed RNA polymerase subunit omega [Saccharopolyspora 
erythraea NRRL 2338]
 gi|166230357|sp|A4FBI2.1|RPOZ_SACEN RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|133911294|emb|CAM01407.1| DNA-directed RNA polymerase subunit omega [Saccharopolyspora 
erythraea NRRL 2338]
Length=97

 Score =  141 bits (355),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 69/86 (81%), Positives = 78/86 (91%), Gaps = 0/86 (0%)

Query  25   ASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVE  84
            +S   + P GITNPPID+LL++VSSKYALVIY+AKRARQINDYY QLGEG+LEYVGPLVE
Sbjct  12   SSPSLNAPEGITNPPIDDLLEQVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVE  71

Query  85   PGLQEKPLSIALREIHADLLEHTEGE  110
            PG +EKPLSIALREIHA +LEHTEGE
Sbjct  72   PGPREKPLSIALREIHAGVLEHTEGE  97


>gi|325001018|ref|ZP_08122130.1| DNA-directed RNA polymerase subunit omega [Pseudonocardia sp. 
P1]
Length=89

 Score =  140 bits (352),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 68/88 (78%), Positives = 77/88 (88%), Gaps = 0/88 (0%)

Query  23   SGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPL  82
            S  + G   P GITNPPID+LL +VSSKYALVIYAAKRARQIN+YY+QLGEG+LEYVGPL
Sbjct  2    STPTAGITAPEGITNPPIDDLLGQVSSKYALVIYAAKRARQINEYYSQLGEGLLEYVGPL  61

Query  83   VEPGLQEKPLSIALREIHADLLEHTEGE  110
            VEPG +EKPLSIA+REI A +LEHTEGE
Sbjct  62   VEPGAREKPLSIAMREIQAGMLEHTEGE  89


>gi|257055593|ref|YP_003133425.1| DNA-directed RNA polymerase, omega subunit [Saccharomonospora 
viridis DSM 43017]
 gi|256585465|gb|ACU96598.1| DNA-directed RNA polymerase, omega subunit [Saccharomonospora 
viridis DSM 43017]
Length=91

 Score =  139 bits (351),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 69/77 (90%), Positives = 73/77 (95%), Gaps = 0/77 (0%)

Query  34   GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS  93
            GITNPPIDELL++VSSKYALVIYAAKRARQINDYY QLGEG+LEYVGPLVEPG +EK LS
Sbjct  15   GITNPPIDELLEKVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKSLS  74

Query  94   IALREIHADLLEHTEGE  110
            IALREIHA LLEHTEGE
Sbjct  75   IALREIHAGLLEHTEGE  91


>gi|296394692|ref|YP_003659576.1| DNA-directed RNA polymerase subunit omega [Segniliparus rotundus 
DSM 44985]
 gi|296181839|gb|ADG98745.1| DNA-directed RNA polymerase, omega subunit [Segniliparus rotundus 
DSM 44985]
Length=89

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 66/82 (81%), Positives = 72/82 (88%), Gaps = 0/82 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            +D P GITNPPIDELL+ VSSKYALVIY AKRARQINDYY QLGEG+ +YVGPLVEPGLQ
Sbjct  7    FDPPQGITNPPIDELLEHVSSKYALVIYGAKRARQINDYYTQLGEGLFDYVGPLVEPGLQ  66

Query  89   EKPLSIALREIHADLLEHTEGE  110
            EKPL+IALREIH  LLEH E +
Sbjct  67   EKPLAIALREIHEGLLEHNEAQ  88


>gi|298256327|gb|ADI71436.1| putative DNA-directed RNA polymerase omega subunit [Amycolatopsis 
orientalis subsp. vinearia]
Length=89

 Score =  138 bits (348),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 67/77 (88%), Positives = 73/77 (95%), Gaps = 0/77 (0%)

Query  34   GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS  93
            GITNPPID+LL++VSSKYALVIY+AKRARQINDYY QLGEG+LEYVGPLVEPG +EKPLS
Sbjct  13   GITNPPIDDLLEKVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLS  72

Query  94   IALREIHADLLEHTEGE  110
            IALREIH  LLEHTEGE
Sbjct  73   IALREIHGGLLEHTEGE  89


>gi|300784662|ref|YP_003764953.1| DNA-directed RNA polymerase subunit omega [Amycolatopsis mediterranei 
U32]
 gi|299794176|gb|ADJ44551.1| DNA-directed RNA polymerase subunit omega [Amycolatopsis mediterranei 
U32]
 gi|340526085|gb|AEK41290.1| DNA-directed RNA polymerase subunit omega [Amycolatopsis mediterranei 
S699]
Length=89

 Score =  138 bits (348),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 67/77 (88%), Positives = 73/77 (95%), Gaps = 0/77 (0%)

Query  34   GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS  93
            GITNPPID+LL++VSSKYALVIY+AKRARQINDYY QLGEG+LEYVGPLVEPG +EKPLS
Sbjct  13   GITNPPIDDLLEKVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLS  72

Query  94   IALREIHADLLEHTEGE  110
            IALREIH  LLEHTEGE
Sbjct  73   IALREIHGGLLEHTEGE  89


>gi|172040653|ref|YP_001800367.1| DNA-directed RNA polymerase subunit omega [Corynebacterium urealyticum 
DSM 7109]
 gi|226703114|sp|B1VDN5.1|RPOZ_CORU7 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|171851957|emb|CAQ04933.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium urealyticum 
DSM 7109]
Length=93

 Score =  135 bits (340),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 62/81 (77%), Positives = 72/81 (89%), Gaps = 0/81 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            +D P+GITNPPIDELL +VSSKYAL I+AAKRARQINDY+  + EG+LE+VGPLV P + 
Sbjct  13   FDPPVGITNPPIDELLTKVSSKYALAIFAAKRARQINDYFQSIDEGVLEFVGPLVTPEMH  72

Query  89   EKPLSIALREIHADLLEHTEG  109
            EKPLSIALREI+ADLLEHTEG
Sbjct  73   EKPLSIALREINADLLEHTEG  93


>gi|336325653|ref|YP_004605619.1| DNA-directed RNA polymerase subunit omega [Corynebacterium resistens 
DSM 45100]
 gi|336101635|gb|AEI09455.1| DNA-directed RNA polymerase subunit omega [Corynebacterium resistens 
DSM 45100]
Length=93

 Score =  135 bits (339),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 62/81 (77%), Positives = 71/81 (88%), Gaps = 0/81 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            +D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+  + EG+ E+VGPLV P  Q
Sbjct  13   FDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDAQ  72

Query  89   EKPLSIALREIHADLLEHTEG  109
            EKPLSIALREI+ DLLEHTEG
Sbjct  73   EKPLSIALREINKDLLEHTEG  93


>gi|302525873|ref|ZP_07278215.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp. 
AA4]
 gi|302434768|gb|EFL06584.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp. 
AA4]
Length=89

 Score =  135 bits (339),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 66/77 (86%), Positives = 72/77 (94%), Gaps = 0/77 (0%)

Query  34   GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS  93
            GITNPPI +LL++VSSKYALVIY+AKRARQINDYY QLGEG+LEYVGPLVEPG +EKPLS
Sbjct  13   GITNPPIYDLLEKVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLS  72

Query  94   IALREIHADLLEHTEGE  110
            IALREIH  LLEHTEGE
Sbjct  73   IALREIHGGLLEHTEGE  89


>gi|334563393|ref|ZP_08516384.1| DNA-directed RNA polymerase subunit omega [Corynebacterium bovis 
DSM 20582]
Length=93

 Score =  134 bits (338),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 61/81 (76%), Positives = 72/81 (89%), Gaps = 0/81 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            +D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+  + +G+ E+VGPLV P +Q
Sbjct  13   FDPPVGITNPPIDELLKKVSSKYALVIFAAKRARQINDYFQTVDDGVFEFVGPLVTPDMQ  72

Query  89   EKPLSIALREIHADLLEHTEG  109
            EKPLSIALREI+ DLLEHTEG
Sbjct  73   EKPLSIALREINRDLLEHTEG  93


>gi|213965604|ref|ZP_03393798.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium amycolatum 
SK46]
 gi|213951763|gb|EEB63151.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium amycolatum 
SK46]
Length=92

 Score =  134 bits (337),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 63/81 (78%), Positives = 72/81 (89%), Gaps = 0/81 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            +D P+GITNPPIDELL + SSKYAL I+AAKRARQINDYY Q+ EG+LEYVGPLV PG+ 
Sbjct  12   FDPPIGITNPPIDELLGKASSKYALAIFAAKRARQINDYYQQIDEGMLEYVGPLVTPGVA  71

Query  89   EKPLSIALREIHADLLEHTEG  109
            EKPLSIALREI+A LL+HTEG
Sbjct  72   EKPLSIALREINAGLLDHTEG  92


>gi|340794465|ref|YP_004759928.1| DNA-directed RNA polymerase subunit omega [Corynebacterium variabile 
DSM 44702]
 gi|340534375|gb|AEK36855.1| DNA-directed RNA polymerase omega subunit [Corynebacterium variabile 
DSM 44702]
Length=93

 Score =  134 bits (336),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 62/84 (74%), Positives = 73/84 (87%), Gaps = 0/84 (0%)

Query  26   SGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEP  85
            S  +D P+GITNPPID+LL +VSSKYALVI+AAKRARQIN+Y+  +GEG+ E+VGPLV P
Sbjct  10   STVFDQPIGITNPPIDDLLTKVSSKYALVIFAAKRARQINNYFQNVGEGVFEFVGPLVAP  69

Query  86   GLQEKPLSIALREIHADLLEHTEG  109
              +EKPLSIALREI ADLLEHTEG
Sbjct  70   ENKEKPLSIALREIDADLLEHTEG  93


>gi|260578790|ref|ZP_05846697.1| DNA-directed RNA polymerase subunit omega [Corynebacterium jeikeium 
ATCC 43734]
 gi|258603088|gb|EEW16358.1| DNA-directed RNA polymerase subunit omega [Corynebacterium jeikeium 
ATCC 43734]
Length=96

 Score =  133 bits (335),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 61/81 (76%), Positives = 71/81 (88%), Gaps = 0/81 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            +D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+  + EG+ E+VGPLV P + 
Sbjct  16   FDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDVH  75

Query  89   EKPLSIALREIHADLLEHTEG  109
            EKPLSIALREI+ DLLEHTEG
Sbjct  76   EKPLSIALREINRDLLEHTEG  96


>gi|68536095|ref|YP_250800.1| DNA-directed RNA polymerase subunit omega [Corynebacterium jeikeium 
K411]
 gi|109914411|sp|Q4JVH5.1|RPOZ_CORJK RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|68263694|emb|CAI37182.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium jeikeium 
K411]
Length=93

 Score =  133 bits (334),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 61/81 (76%), Positives = 71/81 (88%), Gaps = 0/81 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            +D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+  + EG+ E+VGPLV P + 
Sbjct  13   FDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDVH  72

Query  89   EKPLSIALREIHADLLEHTEG  109
            EKPLSIALREI+ DLLEHTEG
Sbjct  73   EKPLSIALREINRDLLEHTEG  93


>gi|258654283|ref|YP_003203439.1| DNA-directed RNA polymerase subunit omega [Nakamurella multipartita 
DSM 44233]
 gi|258557508|gb|ACV80450.1| DNA-directed RNA polymerase, omega subunit [Nakamurella multipartita 
DSM 44233]
Length=95

 Score =  127 bits (318),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 64/77 (84%), Positives = 67/77 (88%), Gaps = 0/77 (0%)

Query  34   GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS  93
            GIT PPIDELL R SSKY L IYAAKRARQINDYY QLGEG+LEYVGPLVEP  +EKPLS
Sbjct  19   GITYPPIDELLTRTSSKYGLSIYAAKRARQINDYYAQLGEGLLEYVGPLVEPLPKEKPLS  78

Query  94   IALREIHADLLEHTEGE  110
            IALREI+A LL HTEGE
Sbjct  79   IALREINAGLLTHTEGE  95


>gi|38233913|ref|NP_939680.1| DNA-directed RNA polymerase subunit omega [Corynebacterium diphtheriae 
NCTC 13129]
 gi|41688613|sp|P60333.1|RPOZ_CORDI RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP 
omega subunit; AltName: Full=RNA polymerase omega subunit; 
AltName: Full=Transcriptase subunit omega
 gi|38200174|emb|CAE49855.1| Putative DNA-directed RNA polymerase omega chain [Corynebacterium 
diphtheriae]
Length=92

 Score =  125 bits (314),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 61/83 (74%), Positives = 66/83 (80%), Gaps = 0/83 (0%)

Query  27   GGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPG  86
            G YD P GIT PPIDELL  VSSKYALVI+AAKRARQIN YY Q  EG+ E+VGPLV P 
Sbjct  10   GVYDAPTGITAPPIDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPE  69

Query  87   LQEKPLSIALREIHADLLEHTEG  109
             QEKPLSIA+REI A LL+H EG
Sbjct  70   AQEKPLSIAMREIEAGLLDHEEG  92


>gi|337290848|ref|YP_004629869.1| DNA-directed RNA polymerase subunit omega [Corynebacterium ulcerans 
BR-AD22]
 gi|334696962|gb|AEG81759.1| DNA-directed RNA polymerase omega subunit [Corynebacterium ulcerans 
809]
 gi|334699154|gb|AEG83950.1| DNA-directed RNA polymerase omega subunit [Corynebacterium ulcerans 
BR-AD22]
Length=92

 Score =  125 bits (313),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 61/83 (74%), Positives = 66/83 (80%), Gaps = 0/83 (0%)

Query  27   GGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPG  86
            G YD P GIT PPID+LL RVSSKYALVI+AAKRARQIN YY Q  EG+ E+VGPLV P 
Sbjct  10   GVYDAPTGITAPPIDDLLKRVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPE  69

Query  87   LQEKPLSIALREIHADLLEHTEG  109
             QEKPLSIALREI   LL+H EG
Sbjct  70   AQEKPLSIALREIEQGLLDHEEG  92


>gi|296117970|ref|ZP_06836553.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium ammoniagenes 
DSM 20306]
 gi|295969201|gb|EFG82443.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium ammoniagenes 
DSM 20306]
Length=101

 Score =  124 bits (312),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 60/81 (75%), Positives = 68/81 (84%), Gaps = 0/81 (0%)

Query  29   YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ  88
            +DTP+GIT+PPIDELL+ VSSKYALVI+AAKRARQIN YY +  EG+ E+VGPLV P   
Sbjct  18   FDTPIGITSPPIDELLETVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEPG  77

Query  89   EKPLSIALREIHADLLEHTEG  109
            EKPLSIALREI A LLEH EG
Sbjct  78   EKPLSIALREIEAGLLEHEEG  98



Lambda     K      H
   0.312    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129022162688


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40