BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1395 Length=344 Score E Sequences producing significant alignments: (Bits) Value gi|15840854|ref|NP_335891.1| AraC family transcriptional regulat... 688 0.0 gi|7478980|pir||B70990 probable transcription activator protein ... 688 0.0 gi|340626409|ref|YP_004744861.1| putative transcriptional regula... 686 0.0 gi|289574061|ref|ZP_06454288.1| AraC family transcriptional regu... 686 0.0 gi|167966716|ref|ZP_02548993.1| hypothetical transcriptional reg... 661 0.0 gi|289569411|ref|ZP_06449638.1| transcriptional regulator [Mycob... 627 6e-178 gi|289745147|ref|ZP_06504525.1| transcriptional regulatory prote... 570 2e-160 gi|240172967|ref|ZP_04751625.1| putative transcriptional regulat... 545 3e-153 gi|289574062|ref|ZP_06454289.1| transcriptional regulator [Mycob... 497 9e-139 gi|333919890|ref|YP_004493471.1| AraC family transcriptional reg... 208 1e-51 gi|54026319|ref|YP_120561.1| putative transcriptional regulator ... 206 4e-51 gi|269128149|ref|YP_003301519.1| AraC family transcriptional reg... 204 2e-50 gi|172062540|ref|YP_001810191.1| AraC family transcriptional reg... 201 1e-49 gi|115360083|ref|YP_777221.1| AraC family transcriptional regula... 199 4e-49 gi|254429479|ref|ZP_05043186.1| transcriptional regulator, AraC ... 199 4e-49 gi|170736299|ref|YP_001777559.1| AraC family transcriptional reg... 199 6e-49 gi|206562492|ref|YP_002233255.1| AraC family regulatory protein ... 198 8e-49 gi|170699847|ref|ZP_02890878.1| transcriptional regulator, AraC ... 198 1e-48 gi|116691701|ref|YP_837234.1| AraC family transcriptional regula... 198 1e-48 gi|110834967|ref|YP_693826.1| AraC family transcriptional regula... 197 3e-48 gi|333918390|ref|YP_004491971.1| hypothetical protein AS9A_0718 ... 196 5e-48 gi|254249038|ref|ZP_04942358.1| Helix-turn-helix protein [Burkho... 195 9e-48 gi|333922121|ref|YP_004495702.1| AraC family transcriptional reg... 195 1e-47 gi|15597292|ref|NP_250786.1| transcriptional regulator [Pseudomo... 191 1e-46 gi|257055671|ref|YP_003133503.1| DNA-binding domain-containing p... 191 2e-46 gi|330822398|ref|YP_004362619.1| Transcriptional regulator, AraC... 190 2e-46 gi|300783480|ref|YP_003763771.1| AraC family transcriptional reg... 190 3e-46 gi|296389487|ref|ZP_06878962.1| putative transcriptional regulat... 189 6e-46 gi|134291651|ref|YP_001115420.1| AraC family transcriptional reg... 189 6e-46 gi|116050043|ref|YP_791143.1| AraC family transcriptional regula... 189 7e-46 gi|107101524|ref|ZP_01365442.1| hypothetical protein PaerPA_0100... 189 7e-46 gi|167567440|ref|ZP_02360356.1| transcriptional regulator, AraC ... 189 8e-46 gi|238023348|ref|YP_002907581.1| AraC family transcriptional reg... 187 1e-45 gi|149925894|ref|ZP_01914157.1| putative transcriptional regulat... 187 2e-45 gi|330821759|ref|YP_004350621.1| Transcriptional regulator, AraC... 185 9e-45 gi|167574348|ref|ZP_02367222.1| transcriptional regulator, AraC ... 185 1e-44 gi|78063359|ref|YP_373267.1| AraC family transcriptional regulat... 185 1e-44 gi|146306919|ref|YP_001187384.1| AraC family transcriptional reg... 184 1e-44 gi|54025762|ref|YP_120004.1| putative transcriptional regulator ... 184 2e-44 gi|319948386|ref|ZP_08022527.1| transcriptional regulator, AraC ... 184 2e-44 gi|167562354|ref|ZP_02355270.1| transcriptional regulator, AraC ... 184 2e-44 gi|167574874|ref|ZP_02367748.1| transcriptional regulator, AraC ... 184 2e-44 gi|83719900|ref|YP_443296.1| AraC family transcriptional regulat... 182 6e-44 gi|110835406|ref|YP_694265.1| AraC family transcriptional regula... 182 6e-44 gi|229592679|ref|YP_002874798.1| putative AraC family regulatory... 182 7e-44 gi|167620411|ref|ZP_02389042.1| transcriptional regulator, AraC ... 182 7e-44 gi|257139532|ref|ZP_05587794.1| AraC family transcriptional regu... 182 7e-44 gi|167582314|ref|ZP_02375188.1| transcriptional regulator, AraC ... 182 8e-44 gi|53725566|ref|YP_102532.1| AraC family transcriptional regulat... 181 2e-43 gi|126441580|ref|YP_001058516.1| AraC family transcriptional reg... 181 2e-43 >gi|15840854|ref|NP_335891.1| AraC family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31792589|ref|NP_855082.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|57116860|ref|YP_177808.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] 70 more sequence titles Length=344 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/344 (99%), Positives = 344/344 (100%), Gaps = 0/344 (0%) Query 1 VGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA 60 +GHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA Sbjct 1 MGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA 60 Query 61 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 120 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI Sbjct 61 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 120 Query 121 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 180 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD Sbjct 121 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 180 Query 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER Sbjct 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 Query 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV Sbjct 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 Query 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG Sbjct 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 >gi|7478980|pir||B70990 probable transcription activator protein - Mycobacterium tuberculosis (strain H37RV) Length=360 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/344 (99%), Positives = 344/344 (100%), Gaps = 0/344 (0%) Query 1 VGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA 60 +GHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA Sbjct 1 MGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA 60 Query 61 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 120 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI Sbjct 61 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 120 Query 121 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 180 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD Sbjct 121 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 180 Query 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER Sbjct 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 Query 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV Sbjct 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 Query 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG Sbjct 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 >gi|340626409|ref|YP_004744861.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340004599|emb|CCC43743.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] Length=344 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/344 (99%), Positives = 344/344 (100%), Gaps = 0/344 (0%) Query 1 VGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA 60 +GHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA Sbjct 1 MGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA 60 Query 61 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 120 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI Sbjct 61 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 120 Query 121 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 180 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD Sbjct 121 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 180 Query 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLE+CIAQCDVLMQRNER Sbjct 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEICIAQCDVLMQRNER 240 Query 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV Sbjct 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 Query 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG Sbjct 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 >gi|289574061|ref|ZP_06454288.1| AraC family transcriptional regulator [Mycobacterium tuberculosis K85] gi|289538492|gb|EFD43070.1| AraC family transcriptional regulator [Mycobacterium tuberculosis K85] Length=356 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/344 (99%), Positives = 344/344 (100%), Gaps = 0/344 (0%) Query 1 VGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA 60 +GHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA Sbjct 1 MGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA 60 Query 61 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 120 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI Sbjct 61 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 120 Query 121 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 180 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD Sbjct 121 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 180 Query 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER Sbjct 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 Query 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV Sbjct 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 Query 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG Sbjct 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 >gi|167966716|ref|ZP_02548993.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|254550408|ref|ZP_05140855.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|339294374|gb|AEJ46485.1| putative transcription activator protein [Mycobacterium tuberculosis CCDC5079] gi|339298011|gb|AEJ50121.1| putative transcription activator protein [Mycobacterium tuberculosis CCDC5180] Length=331 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/331 (99%), Positives = 331/331 (100%), Gaps = 0/331 (0%) Query 14 VYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAG 73 +YATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAG Sbjct 1 MYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAG 60 Query 74 IGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVEL 133 IGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVEL Sbjct 61 IGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVEL 120 Query 134 DASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPV 193 DASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPV Sbjct 121 DASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPV 180 Query 194 HDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLF 253 HDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLF Sbjct 181 HDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLF 240 Query 254 RDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQV 313 RDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQV Sbjct 241 RDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQV 300 Query 314 STRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 STRLGYTEVSTFSHAFKRWYGVAPSEYSRRG Sbjct 301 STRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 331 >gi|289569411|ref|ZP_06449638.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289543165|gb|EFD46813.1| transcriptional regulator [Mycobacterium tuberculosis T17] Length=316 Score = 627 bits (1618), Expect = 6e-178, Method: Compositional matrix adjust. Identities = 314/314 (100%), Positives = 314/314 (100%), Gaps = 0/314 (0%) Query 31 TADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGSRFALTHFGLF 90 TADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGSRFALTHFGLF Sbjct 3 TADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGSRFALTHFGLF 62 Query 91 GFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRGFFIERD 150 GFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRGFFIERD Sbjct 63 GFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRGFFIERD 122 Query 151 IAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAFGRAHNRVHFPRA 210 IAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAFGRAHNRVHFPRA Sbjct 123 IAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAFGRAHNRVHFPRA 182 Query 211 MFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSGLFPTFTDVAGELD 270 MFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSGLFPTFTDVAGELD Sbjct 183 MFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSGLFPTFTDVAGELD 242 Query 271 MHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYTEVSTFSHAFK 330 MHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYTEVSTFSHAFK Sbjct 243 MHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYTEVSTFSHAFK 302 Query 331 RWYGVAPSEYSRRG 344 RWYGVAPSEYSRRG Sbjct 303 RWYGVAPSEYSRRG 316 >gi|289745147|ref|ZP_06504525.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289685675|gb|EFD53163.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] Length=284 Score = 570 bits (1468), Expect = 2e-160, Method: Compositional matrix adjust. Identities = 283/284 (99%), Positives = 284/284 (100%), Gaps = 0/284 (0%) Query 61 VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 120 +RRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI Sbjct 1 MRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI 60 Query 121 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 180 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD Sbjct 61 TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD 120 Query 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER Sbjct 121 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 180 Query 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV Sbjct 181 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 240 Query 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG Sbjct 241 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 284 >gi|240172967|ref|ZP_04751625.1| putative transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=342 Score = 545 bits (1405), Expect = 3e-153, Method: Compositional matrix adjust. Identities = 279/337 (83%), Positives = 303/337 (90%), Gaps = 0/337 (0%) Query 8 AEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLAR 67 AEV H VYATRVLCEVANE GVPT+DVLAGTAI DLDDPDAV+ A DEI AVRRLLAR Sbjct 6 AEVSHGVYATRVLCEVANEHGVPTSDVLAGTAIRQTDLDDPDAVISAGDEILAVRRLLAR 65 Query 68 LPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETAD 127 LP+ AGIG+DVGSRF LTHFGLFGFAVMSC TLREL +IAMRYFALT +H+D+ LFETA Sbjct 66 LPEHAGIGVDVGSRFTLTHFGLFGFAVMSCATLRELFSIAMRYFALTMLHIDVRLFETAG 125 Query 128 DCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPL 187 DCL+ELDA HLP DVR FFIERDIAGI+ATTTSFALP+AAKYA+QVSAE+AVD LLRPL Sbjct 126 DCLLELDAGHLPPDVRRFFIERDIAGILATTTSFALPVAAKYAEQVSAEVAVDERLLRPL 185 Query 188 LELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITAL 247 LELVP+H VAFGRAHNR+HFPRAMFDEPLPQADRHTLEMC+AQCDVLMQRNE+RRGITAL Sbjct 186 LELVPIHHVAFGRAHNRLHFPRAMFDEPLPQADRHTLEMCMAQCDVLMQRNEQRRGITAL 245 Query 248 VRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVG 307 VR+KLFRD GLFPT D+A E+ +HPRTLRRRLAEEGTSFRALL EARSTVAVDLL NVG Sbjct 246 VRTKLFRDPGLFPTLPDIAAEVGLHPRTLRRRLAEEGTSFRALLNEARSTVAVDLLCNVG 305 Query 308 LTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 LT ++VS RLGYTEVSTFSHAFKRWYGVAPS Y +R Sbjct 306 LTTEEVSRRLGYTEVSTFSHAFKRWYGVAPSAYPQRN 342 >gi|289574062|ref|ZP_06454289.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289538493|gb|EFD43071.1| transcriptional regulator [Mycobacterium tuberculosis K85] Length=249 Score = 497 bits (1280), Expect = 9e-139, Method: Compositional matrix adjust. Identities = 249/249 (100%), Positives = 249/249 (100%), Gaps = 0/249 (0%) Query 25 NERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGSRFAL 84 NERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGSRFAL Sbjct 1 NERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGSRFAL 60 Query 85 THFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRG 144 THFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRG Sbjct 61 THFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRG 120 Query 145 FFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAFGRAHNR 204 FFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAFGRAHNR Sbjct 121 FFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAFGRAHNR 180 Query 205 VHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSGLFPTFTD 264 VHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSGLFPTFTD Sbjct 181 VHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSGLFPTFTD 240 Query 265 VAGELDMHP 273 VAGELDMHP Sbjct 241 VAGELDMHP 249 >gi|333919890|ref|YP_004493471.1| AraC family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333482111|gb|AEF40671.1| Transcriptional regulator, AraC family [Amycolicicoccus subflavus DQS3-9A1] Length=365 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/325 (38%), Positives = 177/325 (55%), Gaps = 5/325 (1%) Query 16 ATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIG 75 A R+L ++ E GV + +LAG+ + ADLDDP+ + A E++ R LL L D G+G Sbjct 36 AARILVDLGEEYGVASMKMLAGSGLHRADLDDPETEIEAGQEMSIARNLLRILGDRPGLG 95 Query 76 IDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDA 135 + GSR+ L GL+GF +++ T+R+L + RY AL+ + E V DA Sbjct 96 VRAGSRYTLGSLGLWGFTMITSPTVRDLAKLGTRYAALSFAFIRPIYEEDETHGRVIYDA 155 Query 136 SHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHD 195 +P DVR FF+ER++A I+A + + V + A L L P Sbjct 156 QEIPEDVRSFFVERELAKILALEQEIVGSRPGFHIETVFGDDRASA-----LQRLAPRRT 210 Query 196 VAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRD 255 V GRA++ + F R + DE Q D T + QC L++R + RRG+ A VR K+ Sbjct 211 VLSGRANHALVFTRKLLDERTQQGDPVTTQRWQEQCAQLLERRQSRRGLAAQVRGKVLAR 270 Query 256 SGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVST 315 P ++A +L M RTLRR+L EG SFR L+ E RST+A+++L N LTV +V+ Sbjct 271 LDDPPGMDEIASQLHMEERTLRRKLTMEGVSFRDLVDEVRSTLAIEMLGNGQLTVAEVAV 330 Query 316 RLGYTEVSTFSHAFKRWYGVAPSEY 340 RLGY + + FS AFKRW G +P + Sbjct 331 RLGYNDGAAFSRAFKRWTGSSPGRH 355 >gi|54026319|ref|YP_120561.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017827|dbj|BAD59197.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=351 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/329 (38%), Positives = 177/329 (54%), Gaps = 9/329 (2%) Query 19 VLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDV 78 V+ E A GVP VLAGT ++ L +PD + A E+ AVR LLA + G+G+ V Sbjct 22 VMAEFAARNGVPVERVLAGTGLDEQALAEPDRQIPARTELAAVRNLLAAFDGEPGLGLRV 81 Query 79 GSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHL 138 G R+ ++ FG+FG+A ++ TLRE +T+A+RY+ L + + + ++ + Sbjct 82 GRRYRVSTFGIFGYACVTSPTLREAITLALRYYRLGYAFCTPIVEFRPGEVVAWINHELI 141 Query 139 PADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAF 198 PADVR F +ERD+ I + L + + AE A + V F Sbjct 142 PADVRTFLVERDVVAIHRVMSD----LLGERLNLARAEFACPEPEHAARMASVFGVRPRF 197 Query 199 GRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSGL 258 G H + + PLPQA++ T +MC+AQC L++R R GI A VR +L SG Sbjct 198 GSEHTLFAIDPEVLNRPLPQANQPTWQMCVAQCHELIRRRTARTGIAAEVRERLLPGSGA 257 Query 259 F-----PTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQV 313 PT VA +L+M RTLRRRL E GTS+RALL E R +A ++L L+V + Sbjct 258 MGVGTPPTIDAVARDLNMSARTLRRRLDEAGTSYRALLDEVRRALAEEMLTAAPLSVDDI 317 Query 314 STRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 + RLGY E + F HAFKRW G+ P+ Y R Sbjct 318 AIRLGYAEATPFIHAFKRWTGLTPAAYRR 346 >gi|269128149|ref|YP_003301519.1| AraC family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313107|gb|ACY99481.1| transcriptional regulator, AraC family [Thermomonospora curvata DSM 43183] Length=351 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/339 (39%), Positives = 180/339 (54%), Gaps = 10/339 (2%) Query 7 PAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLA 66 P VR A +L ++ E G+ +D LAGT + P DLDD A + A E+T R LL Sbjct 11 PWRVRRSPAAAAILVQLGREHGLSASDCLAGTGLTPRDLDDSSAQIEAEQELTIARNLLT 70 Query 67 RLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETA 126 L G+G G R L G GFA+++ TLRE + +A+RY AL+ + L E Sbjct 71 ALGHRPGLGCAAGRRHTLGTTGTLGFALIASATLREGIEVALRYAALSPTFLRPRLEEDG 130 Query 127 DDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRP 186 + LD +HLP D+R F +ERD+A I L + + A LAV LRP Sbjct 131 RWARIWLDDTHLPDDLRTFLLERDLAAIGGL-------LPVLFGEHGPARLAVLDVRLRP 183 Query 187 ---LLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRG 243 L + +P + + R N + FP + EPLP AD + +QC L+ R G Sbjct 184 GPHLAQALPGVRIRYCRPRNVLTFPSRLLQEPLPSADPQIARLSESQCRDLLHRRLGPDG 243 Query 244 ITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLL 303 A VR +L R + P+ +VA EL++ RTL RRL GTSFRAL EAR +AV+LL Sbjct 244 TVAAVRDRLRRRTRRPPSMAEVAAELNITTRTLHRRLERAGTSFRALADEARQELAVELL 303 Query 304 RNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 LTV +++ RLGY+E + F+HAF R +GV PS Y + Sbjct 304 TTTALTVGEIARRLGYSETAAFTHAFTRRHGVPPSRYRK 342 >gi|172062540|ref|YP_001810191.1| AraC family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171995057|gb|ACB65975.1| transcriptional regulator, AraC family [Burkholderia ambifaria MC40-6] Length=352 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/337 (36%), Positives = 180/337 (54%), Gaps = 11/337 (3%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGV +LAGT + A LDDP+ V A E+ LL L Sbjct 7 TRSPASA-RLLVDFGDERGVSRTKLLAGTGLADAQLDDPNVEVTAAQELRLTGNLLRALG 65 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G +VG R+ + +G++G+ +++ T R+ L +AMR+ LT IT E + C Sbjct 66 RAPGLGFEVGQRYHFSAYGVWGYGLIASATARDALALAMRFLPLTYAFTVITYREESHAC 125 Query 130 LVELDASHLPADVRGFFIERDIAGIIATTTS-----FALPLAAKYADQVSAELAVDAELL 184 ++ A L AD+ F +ERD+ + FAL +++ Q + +V Sbjct 126 VLNFGAPELDADLSRFLVERDMTAAVVLLQEIGGDDFAL---SRFTMQAESAGSVATSTR 182 Query 185 RPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI 244 P + V V FG N + F R D PLP A+ T+ MC C L++ R G Sbjct 183 APAPRIAGVEPV-FGARANSLAFDRGFLDRPLPHANPLTVSMCEQMCVQLVEARRARVGT 241 Query 245 TALVRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLL 303 + +VR L G P + D+A ++ PRTL+RRL EEGT+FR LL +AR +A LL Sbjct 242 SEMVRQYLTATPGNVPFSLDDIARLMNTSPRTLKRRLQEEGTTFRTLLAQARGAMAETLL 301 Query 304 RNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 + L++ +V+ RLG++++S+FS AFKRWYGV P Y Sbjct 302 GDAHLSLTEVAERLGFSDLSSFSQAFKRWYGVPPGTY 338 >gi|115360083|ref|YP_777221.1| AraC family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285371|gb|ABI90887.1| transcriptional regulator, AraC family [Burkholderia ambifaria AMMD] Length=373 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/337 (37%), Positives = 182/337 (55%), Gaps = 11/337 (3%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGV +L+GT + A LDDP+ V A E+ LL L Sbjct 28 TRSPASA-RLLADFGDERGVSRTKLLSGTGLADAQLDDPNVEVTAAQELRLTGNLLRALG 86 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G +VG R+ + +G++G+ +++ T R+ L +AMR+ LT IT E A C Sbjct 87 RAPGLGFEVGQRYHFSAYGVWGYGLIASATARDALALAMRFLPLTYAFTVITYREEAHTC 146 Query 130 LVELDASHLPADVRGFFIERDIAGIIATTTS-----FALPLAAKYADQVSAELAVDAELL 184 ++ A L AD+ F +ERD+ + FAL +++ Q ++ +V Sbjct 147 VLNFGAPELDADLSRFLVERDMTAAVVLLQEIGGDDFAL---SRFTMQAASAASVATSTR 203 Query 185 RPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI 244 P + V + AFG N V F R D PLP A+ T+ MC C L++ R G Sbjct 204 APAPRIAGV-EPAFGARANSVAFDRGFLDRPLPHANPLTVSMCEQMCVQLVEARRARVGT 262 Query 245 TALVRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLL 303 + +VR L G P + D+A ++ PRTL+RRL EEGT+FR LL +AR +A LL Sbjct 263 SEMVRQYLTATPGNVPFSLDDIARLMNTSPRTLKRRLQEEGTTFRTLLAQARGAMAETLL 322 Query 304 RNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 + L++ +V+ RLG++++S+FS AFKRWYGV P Y Sbjct 323 GDAHLSLTEVAERLGFSDLSSFSQAFKRWYGVPPGTY 359 >gi|254429479|ref|ZP_05043186.1| transcriptional regulator, AraC family protein [Alcanivorax sp. DG881] gi|196195648|gb|EDX90607.1| transcriptional regulator, AraC family protein [Alcanivorax sp. DG881] Length=325 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 115/323 (36%), Positives = 181/323 (57%), Gaps = 17/323 (5%) Query 24 ANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGSRFA 83 A ERG+P A L G+ I P L D + A E+T VR + L ++A +G+ +G R+ Sbjct 6 AEERGLPVAACLQGSGIHPDMLGQADCTIDAEQELTVVRNMCRELGNEAELGLAMGQRYH 65 Query 84 LTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVR 143 L+ +G++GFA++S T R+ + + +RY LT +DI+L E DD ++ LD S +P +VR Sbjct 66 LSSYGVWGFALLSSPTFRQAVELGLRYLDLTFAFLDISLQEQGDDAILILDDSRVPEEVR 125 Query 144 GFFIERDIAGIIATTTS-FA--LPLAAKYADQVSAELAVDAELLRP---LLELVPVHDVA 197 + + RD + ++ FA +PL+ S E+ + + P + L PV D Sbjct 126 EYLLARDASAVMMIQEELFAGRIPLS-------SLEVRLPPRSIAPFEAVFGLTPVFD-- 176 Query 198 FGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSG 257 R ++ F + D PLPQA+ T +C QC L+ + R+ + VR +L + G Sbjct 177 --RPRSQARFALGLLDMPLPQANPVTARLCEEQCHQLLVQRYRKGSVAVRVRRRLLQQPG 234 Query 258 LFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRL 317 FP +A EL + RTLRR+LA EGTS+RALL E R +A L L++ ++S RL Sbjct 235 RFPDMEAMAEELTITSRTLRRQLAAEGTSYRALLDEVRRMLAEQWLLLGILSLAEISERL 294 Query 318 GYTEVSTFSHAFKRWYGVAPSEY 340 G++E++ F+HAF+RW G +P + Sbjct 295 GFSEIANFNHAFRRWTGQSPGRF 317 >gi|170736299|ref|YP_001777559.1| AraC family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818487|gb|ACA93069.1| transcriptional regulator, AraC family [Burkholderia cenocepacia MC0-3] Length=343 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/337 (37%), Positives = 182/337 (55%), Gaps = 17/337 (5%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGVP A +LAGT + A LDDP V A E+ LL L Sbjct 7 TRSPASA-RLLVDFGDERGVPHATLLAGTGLASAQLDDPKVEVTAAQELRLTGNLLRALG 65 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G +VG R+ + +G++G+ +++ T R+ L +AMR+ LT + IT E+AD Sbjct 66 RAQGLGFEVGRRYHFSAYGVWGYGLIASATGRDALALAMRFLPLTYAYTIITYRESADTG 125 Query 130 LVELDASHLPADVRGFFIERDIAGIIA-----TTTSFALPLAAKYADQVSAELAVDAELL 184 ++ A L AD+ F +ERD+ + FAL +++ Q + A+ A + Sbjct 126 VLSFGAPELDADLSRFLVERDMTAAAVLLHEIASGDFAL---SRFTLQAARSPALAAPRI 182 Query 185 RPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI 244 + + F N + F RA D PLP A+ T+ MC C L++ R G Sbjct 183 AGI-------EPTFSARANSLAFDRAFLDRPLPHANPLTVSMCEQMCGQLVEARRARVGT 235 Query 245 TALVRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLL 303 + +VR L G P + D+A ++ PRTL+RRL EEGT+FRALL + R +A LL Sbjct 236 SEMVRQYLNATPGSAPFSLEDMARLMNTSPRTLKRRLQEEGTTFRALLAQTRGAMAETLL 295 Query 304 RNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 + L++ V+ RLG++++S+FS AFKRWYGV P Y Sbjct 296 GDARLSLADVAERLGFSDLSSFSQAFKRWYGVPPGAY 332 >gi|206562492|ref|YP_002233255.1| AraC family regulatory protein [Burkholderia cenocepacia J2315] gi|198038532|emb|CAR54490.1| AraC family regulatory protein [Burkholderia cenocepacia J2315] Length=343 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 120/333 (37%), Positives = 180/333 (55%), Gaps = 9/333 (2%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGVP A +LAGT + A LDDP V A E+ LL L Sbjct 7 TRSPASA-RLLADFGDERGVPPATLLAGTGLASAQLDDPKVEVTAAQELRLTGNLLRALG 65 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G +VG R+ + +G++G+ ++S T + L +AMR+ LT + IT E AD Sbjct 66 RAQGLGFEVGLRYHFSAYGVWGYGLISSATGSDALALAMRFLPLTYAYTVITYREAADTG 125 Query 130 LVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYA-DQVSAELAVDAELLRPLL 188 ++ A L AD+ F +ERD+ A + +A + + + L+ P + Sbjct 126 VLNFGAPELDADLSRFLVERDMTAAAVLLQEIA---SGDFALSRFTLQAVRSPALVAPRI 182 Query 189 ELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALV 248 + + F N + F RA D PLP A+ T+ MC C L++ R G + +V Sbjct 183 AGI---EPTFAARANSLEFDRAFLDRPLPHANPLTVSMCEQMCGQLVEARRARVGTSEMV 239 Query 249 RSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVG 307 R L G P + D+A ++ PRTL+RRL +EGT+FRALL +AR +A LL + Sbjct 240 RQYLNATPGSAPFSLEDMARLMNTSPRTLKRRLQDEGTTFRALLAQARGAMAETLLADAR 299 Query 308 LTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 L++ +V+ RLG++++S+FS AFKRWYGV P Y Sbjct 300 LSLAEVAERLGFSDLSSFSQAFKRWYGVPPGAY 332 >gi|170699847|ref|ZP_02890878.1| transcriptional regulator, AraC family [Burkholderia ambifaria IOP40-10] gi|170135229|gb|EDT03526.1| transcriptional regulator, AraC family [Burkholderia ambifaria IOP40-10] Length=352 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/337 (37%), Positives = 184/337 (55%), Gaps = 11/337 (3%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGV +LAGT + A LDDP+ V A E+ LL L Sbjct 7 TRSPASA-RLLVDFGDERGVSRTKLLAGTGLADAQLDDPNVEVTAAQELRLTGNLLRALG 65 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G +VG R+ + +G++G+ +++ T R+ L +AMR+ LT IT E + C Sbjct 66 RAPGLGFEVGQRYHFSAYGVWGYGLIASATTRDALALAMRFLPLTYAFTVITYREESQAC 125 Query 130 LVELDASHLPADVRGFFIERDI--AGIIATTTS---FALPLAAKYADQVSAELAVDAELL 184 ++ A L AD+ F +ERD+ A ++ FAL +++ Q ++ + A Sbjct 126 VLNFGAPELDADLSRFLVERDMTAASVLLQEIGGDDFAL---SRFTMQAASAASAAASTR 182 Query 185 RPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI 244 P + V + AFG N + F R D PLP A+ T+ MC C L++ R G Sbjct 183 APAPRIAGV-EPAFGARANSLAFDREFLDRPLPHANPLTVSMCEQMCGQLVEARRARVGT 241 Query 245 TALVRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLL 303 + +VR L G P + D+A ++ PRTL+RRL EEGT+FR LL +AR +A LL Sbjct 242 SEMVRQYLTATPGNVPFSLEDMARLMNTSPRTLKRRLQEEGTTFRTLLAQARGAMAETLL 301 Query 304 RNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 + L++ +V+ RLG++++S+FS AFKRWYGV P Y Sbjct 302 GDAHLSLTEVAERLGFSDLSSFSQAFKRWYGVPPGTY 338 >gi|116691701|ref|YP_837234.1| AraC family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649701|gb|ABK10341.1| transcriptional regulator, AraC family [Burkholderia cenocepacia HI2424] Length=364 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/337 (37%), Positives = 181/337 (54%), Gaps = 17/337 (5%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGVP A +LAGT + A LDDP V A E+ LL L Sbjct 28 TRSPASA-RLLVDFGDERGVPHATLLAGTGLASAQLDDPKVEVTAAQELRLTGNLLRALG 86 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G +VG R+ + +G++G+ +++ T R+ L +AMR+ LT + IT E AD Sbjct 87 RAQGLGFEVGRRYHFSAYGVWGYGLIASATGRDALALAMRFLPLTYAYTVITYREAADTG 146 Query 130 LVELDASHLPADVRGFFIERDIAGIIA-----TTTSFALPLAAKYADQVSAELAVDAELL 184 ++ A L AD+ F +ERD+ + FAL +++ Q + A+ A + Sbjct 147 VLSFGAPELDADLSRFLVERDMTAAAVLLHEIASGDFAL---SRFTLQAARSPALAAPRI 203 Query 185 RPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI 244 + + F N + F RA D PLP A+ T+ MC C L++ R G Sbjct 204 AGI-------EPTFSARANSLAFDRAFLDRPLPHANPLTVSMCEQMCGQLVEARRARVGT 256 Query 245 TALVRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLL 303 + +VR L G P + D+A ++ PRTL+RRL EEGT+FRALL + R +A LL Sbjct 257 SEMVRQYLNATPGSAPFSLDDMARLMNTSPRTLKRRLQEEGTTFRALLAQTRGAMAETLL 316 Query 304 RNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 + L++ V+ RLG++++S+FS AFKRWYGV P Y Sbjct 317 GDARLSLADVAERLGFSDLSSFSQAFKRWYGVPPGAY 353 >gi|110834967|ref|YP_693826.1| AraC family transcriptional regulator [Alcanivorax borkumensis SK2] gi|110648078|emb|CAL17554.1| transcriptional regulator, AraC family [Alcanivorax borkumensis SK2] Length=334 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 113/336 (34%), Positives = 181/336 (54%), Gaps = 11/336 (3%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 V+ + + R+ A E+GVP + L + I+ A L D +GA E+T VR L L Sbjct 3 VQRAITSVRMQVAFAEEQGVPASVCLHNSGIDLAMLGQADCTIGAEQELTVVRNLCRALG 62 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 + A +G+ +G R+ L+ +G++GFA++S T R+ + + +RY LT +D++L + +D Sbjct 63 NHAELGLAMGQRYHLSSYGVWGFALLSSPTFRQAVELGLRYLDLTFAFLDVSLQQEGNDA 122 Query 130 LVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAV---DAELLRP 186 L+ LD S +P +VR + + RD + ++ L A S E+ + A Sbjct 123 LLILDDSGVPEEVREYLLARDASAVMMIQEE----LFAGRVPLSSLEIRLPPRTAATFES 178 Query 187 LLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITA 246 + LVP FGR ++ F + D PLPQA+ T +C QC L+ + R+ + A Sbjct 179 IFGLVP----EFGRPRSQARFALGLLDMPLPQANPVTARLCEEQCHQLLVQRYRKGSVAA 234 Query 247 LVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNV 306 VR +L + G FP +A EL + RTLRR L EGT +R LL E R +A L Sbjct 235 QVRRRLLQQPGRFPDMEAMAQELAITSRTLRRHLQAEGTGYRMLLDEVRQMLAEQWLTLG 294 Query 307 GLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 L++ ++S RLG++E++ F+HAF+RW G +P + R Sbjct 295 ILSLTEISERLGFSEIANFNHAFRRWTGQSPGRFRR 330 >gi|333918390|ref|YP_004491971.1| hypothetical protein AS9A_0718 [Amycolicicoccus subflavus DQS3-9A1] gi|333480612|gb|AEF39172.1| hypothetical protein AS9A_0718 [Amycolicicoccus subflavus DQS3-9A1] Length=337 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 123/326 (38%), Positives = 173/326 (54%), Gaps = 6/326 (1%) Query 19 VLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDV 78 +L E+A ERGV L GT I L DP A V A E+ VR LLA LPD G+G++ Sbjct 1 MLTELATERGVQPTQTLRGTGITSETLRDPTAEVTAAQELVLVRNLLADLPDVPGLGLEA 60 Query 79 GSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHL 138 G+R+ FG GFA++S T+ E L + R+F L+ + + +D + LD + + Sbjct 61 GTRYHAPSFGPLGFAMISSPTVGEALEVVTRWFDLSFSFSTLHRHDESDRVTLVLDDTGV 120 Query 139 PADVRGFFIERDIAGIIATTTSF--ALPLAAKYADQVSAELAVDAELLRPLLELVPVHDV 196 P DVR F ERD++ II +P+ D E + + R +L + Sbjct 121 PDDVRCFNTERDLSAIITMMRPLLPTVPIMLASLDIALPEPSY-VDRYRDILAAIGTKP- 178 Query 197 AFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDS 256 F + + LPQA+RH EMC+ QC LM R + R G++ VR L R Sbjct 179 NFSMPETVMRIDATLLPLALPQANRHIAEMCVQQCAALMHRRQARVGVSGQVRQHLLR-R 237 Query 257 GLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTR 316 G +VA +++ RTLRRRLAEEGTS+R L E +A DLL + GL V+Q++ R Sbjct 238 GHTTNQDEVARAMNLTVRTLRRRLAEEGTSYRELAAETTGLLAEDLLSS-GLPVEQIAER 296 Query 317 LGYTEVSTFSHAFKRWYGVAPSEYSR 342 LGY + S+F+HAFK W GV P ++R Sbjct 297 LGYADASSFTHAFKSWKGVTPGRFAR 322 >gi|254249038|ref|ZP_04942358.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124875539|gb|EAY65529.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length=364 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 120/337 (36%), Positives = 180/337 (54%), Gaps = 17/337 (5%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGVP A +LAGT + A LDDP V A E+ LL L Sbjct 28 TRSPASA-RLLVDFGDERGVPHATLLAGTGLASAQLDDPKVEVTAAQELRLTGNLLRALG 86 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G +VG R+ + +G++G+ +++ T R+ L +AMR+ LT + IT E+AD Sbjct 87 RAQGLGFEVGRRYHFSAYGVWGYGLIASATGRDALALAMRFLPLTYAYTVITYRESADTG 146 Query 130 LVELDASHLPADVRGFFIERDIAGIIA-----TTTSFALPLAAKYADQVSAELAVDAELL 184 ++ A L AD+ F +ERD+ + FAL +++ Q + A+ A + Sbjct 147 VLSFGAPELDADLSRFLVERDMTAAAVLLHEIASGDFAL---SRFTLQAARSPALAAPRI 203 Query 185 RPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI 244 + + F N + F RA D PLP A+ T+ MC C L++ R G Sbjct 204 AGI-------EPTFSARANSLAFDRAFLDRPLPHANPLTVSMCEQMCGQLVEARRARVGT 256 Query 245 TALVRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLL 303 + +VR L G P + D+A ++ PRT +RRL EEGT+FRALL + R +A LL Sbjct 257 SEMVRQYLNATPGSAPFSLEDMARLMNTSPRTFKRRLQEEGTTFRALLAQTRGAMAETLL 316 Query 304 RNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 + L++ V+ RLG++++S+FS A KRWYGV P Y Sbjct 317 GDARLSLADVAERLGFSDLSSFSQALKRWYGVPPGAY 353 >gi|333922121|ref|YP_004495702.1| AraC family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333484342|gb|AEF42902.1| Transcriptional regulator, AraC family [Amycolicicoccus subflavus DQS3-9A1] Length=349 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/307 (38%), Positives = 169/307 (56%), Gaps = 7/307 (2%) Query 32 ADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGSRFALTHFGLFG 91 A+VLAGT + ADL D A + A E VR ++ +L D G GI+VG G+ G Sbjct 32 AEVLAGTGLTEADLVDETAEIWAHQEFAVVRNIIGKLGDHTGQGIEVGGFSTFGRAGIVG 91 Query 92 FAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRGFFIERDI 151 F ++ T+RE + Y AL HV +++ A + D + +PADVR F +ERD+ Sbjct 92 FTFLASATVREGVERIAPYLALAPSHVRLSVDSDATHSYIVADDTEIPADVRPFIVERDL 151 Query 152 AGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLE-LVPVHDVAFGRAHNRVHFPRA 210 AGI A + LA ++ E +D E L+ ++ ++ NR+ P Sbjct 152 AGIAAVLRGAGVELAPEW-----IETTLDEERAERLVRTWSATAEIRPNQSRNRIAGPPG 206 Query 211 MFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSGLFPTFTDVAGELD 270 M D LPQAD +T + QC ++ R R G++ +RS+L D FP+ VA EL Sbjct 207 MLDAALPQADPNTARLFERQCAEVLDRRLARVGLSGQIRSRLLHDPAHFPSMQTVADELH 266 Query 271 MHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYTEVSTFSHAFK 330 + PRTLRRRL++EGTSFRAL + R T+A LL + +++++ RLGY E ++F+HAF Sbjct 267 LDPRTLRRRLSDEGTSFRALADDVRWTLAERLLAE-HMPIEEIALRLGYAETASFTHAFT 325 Query 331 RWYGVAP 337 RW GVAP Sbjct 326 RWTGVAP 332 >gi|15597292|ref|NP_250786.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|254240525|ref|ZP_04933847.1| hypothetical protein PA2G_01179 [Pseudomonas aeruginosa 2192] gi|9948109|gb|AAG05484.1|AE004637_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126193903|gb|EAZ57966.1| hypothetical protein PA2G_01179 [Pseudomonas aeruginosa 2192] Length=344 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/341 (36%), Positives = 176/341 (52%), Gaps = 10/341 (2%) Query 6 PPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLL 65 PP R + +L + +RG+ LAG+ ++ L DP + A E++ VR L+ Sbjct 4 PPWSPRRSAISAHLLIQFGIDRGLGLEQCLAGSGLDIRLLGDPSGEIDAAQELSVVRNLV 63 Query 66 ARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFET 125 L D G+ G R+ L +G++GFA++S T + +RY LT I L Sbjct 64 RHLGDACAPGLAAGLRYHLNAYGIWGFALLSSPTFLSAAQLGLRYLDLTFAFHGIRLEVH 123 Query 126 ADDCLVELDASHLPADVRGFFIERDIAGIIATT---TSFALPLAAKYADQVSAELAVDAE 182 D+ + LD + +P D+R F +ERD G++ T LP+ A A A Sbjct 124 DDEAHLVLDDAGIPEDLRIFLLERDAGGVLRIQRDLTGQRLPIL--RAGFRRPPPADPAP 181 Query 183 LLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRR 242 +R L L P AFG+A NRV F R D PLP A+ C QC L+ R + R Sbjct 182 YVREL-GLCP----AFGQADNRVVFERRFLDLPLPGANPEVARACEEQCRALLARRQVRG 236 Query 243 GITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDL 302 G+ +R +L R G P +A EL + RTLRRRL +EG+S+R LL E R +A +L Sbjct 237 GLAGRIRDRLLRTPGHLPDMQTLAMELHLTVRTLRRRLDDEGSSYRLLLDEVRQALAEEL 296 Query 303 LRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRR 343 L + +++++ RLGY EVS FSHAF+RW G+ P +Y +R Sbjct 297 LATGAIRLEEIAERLGYGEVSNFSHAFRRWKGMTPRQYRQR 337 >gi|257055671|ref|YP_003133503.1| DNA-binding domain-containing protein, AraC-type [Saccharomonospora viridis DSM 43017] gi|256585543|gb|ACU96676.1| DNA-binding domain-containing protein, AraC-type [Saccharomonospora viridis DSM 43017] Length=321 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/327 (38%), Positives = 172/327 (53%), Gaps = 31/327 (9%) Query 19 VLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP-DDAGIGID 77 +L E A ERG+P VL G+ ++ A + DP A V A E+ +R LLA D A +G + Sbjct 15 LLVEFAAERGIPADVVLDGSGVDIATVRDPLAQVEARQELAVIRNLLAHCAADPAELGHE 74 Query 78 VGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASH 137 VG R+ T +G++GFAV+S T+ + + +A+RY LT + L D + + Sbjct 75 VGCRYHATAYGIWGFAVLSSRTVGDAMRLALRYVELTYVFCAPELRLEGDLAALHWRTTG 134 Query 138 LPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVA 197 +P DVR F + RD+A S L V+ +RP + PV+ V Sbjct 135 VPVDVRPFLLARDVAA--------------------SRTLIVELLGVRP--DFDPVNAV- 171 Query 198 FGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRDSG 257 + PRA+ D +PQA+ HT +C QC L+ + R G VR +L G Sbjct 172 -------ISLPRALLDRRMPQANDHTAAVCEQQCRELLAKRRERGGTARRVRDRLLATDG 224 Query 258 LFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRL 317 L VA EL M RTLRRRLA EGTS+RAL+ E R T+A +LL L+V+QV+ RL Sbjct 225 LHTDMDTVAAELAMTARTLRRRLAAEGTSYRALVDEVRQTLAEELLATRSLSVEQVAYRL 284 Query 318 GYTEVSTFSHAFKRWYGVAPSEYSRRG 344 GY + ++F AF RW GV P Y+R G Sbjct 285 GYGDAASFVRAFTRWKGVPPGRYARSG 311 >gi|330822398|ref|YP_004362619.1| Transcriptional regulator, AraC family protein [Burkholderia gladioli BSR3] gi|327374235|gb|AEA65589.1| Transcriptional regulator, AraC family protein [Burkholderia gladioli BSR3] Length=349 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/335 (36%), Positives = 179/335 (54%), Gaps = 8/335 (2%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + ERGV A +LAGT + LDDP+ V A E+ LL L Sbjct 7 TRSPASA-RLLVDFGAERGVSRAALLAGTGLSDTQLDDPNIEVTAAQELRLTDNLLRSLG 65 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 AG+G +VG R+ + +G++G+ +++ T R+ L +AMR+ LT IT E D Sbjct 66 RPAGLGFEVGLRYHFSAYGVWGYGLIASATARDALALAMRFLPLTYAFTVITYREEPDAG 125 Query 130 LVELDASHLPADVRGFFIERDIAG---IIATTTSFALPLAAKYADQVSAELAVDAELLRP 186 ++ A LP + F +ERD+A ++ T LA + A A P Sbjct 126 VLNFGAPELPDALSRFCVERDMAAAATLLEETAGGDFALARFSLQAARGQSACHAAT--P 183 Query 187 LLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITA 246 +L + + + +G N + F RA D LP A+ T+ MC C L+ R G + Sbjct 184 VLRIGGI-EPEYGARSNSLAFARAYLDRALPHANPITVSMCEQMCGQLLDARRARIGTSM 242 Query 247 LVRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRN 305 ++R L G P + ++A ++ RTL+RRL E+GT+FR LL E+RS +A LLR+ Sbjct 243 MIRHYLNATWGGGPLSLEEMARIMNTSARTLKRRLQEDGTTFRTLLDESRSAMAETLLRD 302 Query 306 VGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 LT+ +++ RLGY+++S+FS AFKRWYGVAP Y Sbjct 303 AHLTLTEIAERLGYSDLSSFSQAFKRWYGVAPQIY 337 >gi|300783480|ref|YP_003763771.1| AraC family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299792994|gb|ADJ43369.1| AraC family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340524866|gb|AEK40071.1| AraC family transcriptional regulator [Amycolatopsis mediterranei S699] Length=351 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/329 (39%), Positives = 171/329 (52%), Gaps = 27/329 (8%) Query 19 VLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDV 78 ++ A ERGVP +LA T + P L DP V A E+ VR L A DA + + Sbjct 23 LMTRFAAERGVPAERLLAATTLTPDQLADPAVQVDARQELAVVRALAALDGSDA-TALQL 81 Query 79 GSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHL 138 G R+ +T FG+FGFA +S TLR+ + A+RYF L+ + AD +ELD + Sbjct 82 GRRYRVTTFGIFGFACISSPTLRDAMLFALRYFDLSFAFCIPHVVLGADRLTLELDDRRV 141 Query 139 PADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDA----------ELLRPLL 188 PADV F + RD+A I A LP E+A+D E R Sbjct 142 PADVARFLVLRDLAAIFAVMRDL-LP-----------EIALDELTFRHGPATPEDYRAAF 189 Query 189 ELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALV 248 ++P FG R A+ PLPQA+ T+ +C AQC+ L+ R R GI+ V Sbjct 190 GVLP----RFGADGCRATLDPALLSRPLPQANDQTVALCAAQCEALVARRRERSGISQQV 245 Query 249 RSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGL 308 R +L R G+ ++A L + RTLRRRL E GTS+RAL+ E R +A +LL L Sbjct 246 RERLVRLGGVDAGMDEIARRLTLSTRTLRRRLTEAGTSYRALVDEVRQALAEELLDTGVL 305 Query 309 TVQQVSTRLGYTEVSTFSHAFKRWYGVAP 337 +V+ V+ RLGY E S+F HAFKRW G+ P Sbjct 306 SVEDVAYRLGYAEASSFIHAFKRWTGMTP 334 >gi|296389487|ref|ZP_06878962.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length=345 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 119/341 (35%), Positives = 176/341 (52%), Gaps = 9/341 (2%) Query 6 PPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLL 65 PP R + +L + +RG+ LAG+ ++ L DP + A E++ VR L+ Sbjct 4 PPWSPRRSAISAHLLIQFGIDRGLGLEQCLAGSGLDIRLLGDPSGEIDAAQELSVVRNLV 63 Query 66 ARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFET 125 L D G+ G R+ L +G++GFA++S T + +RY LT I L Sbjct 64 RHLGDACAPGLAAGLRYHLNAYGIWGFALLSSPTFLSAAQLGLRYLDLTFAFHGIRLEVH 123 Query 126 ADDCLVELDASHLPADVRGFFIERDIAGIIATT---TSFALPLAAKYADQVSAELAVDAE 182 D+ + LD + +P D+R F +ERD G++ T LP+ + + A A Sbjct 124 DDEAHLVLDDAGIPEDLRIFLLERDAGGVLRIQRDLTGQRLPIL-RAGFRRPPPAADPAP 182 Query 183 LLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRR 242 +R L L P AFG+A NRV F R D PLP A+ C QC L+ R + R Sbjct 183 YVREL-GLCP----AFGQADNRVVFERRFLDLPLPGANPEVARACEEQCRALLARRQVRG 237 Query 243 GITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDL 302 G+ +R +L R G P +A EL + RTLRRRL +EG+S+R LL E R +A +L Sbjct 238 GLAGRIRDRLLRTPGHLPDMQTLAMELHLTVRTLRRRLDDEGSSYRLLLDEVRQALAEEL 297 Query 303 LRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRR 343 L + +++++ RLGY EVS F HAF+RW G+ P +Y +R Sbjct 298 LATGAIRLEEIAERLGYGEVSNFIHAFRRWKGMTPRQYRQR 338 >gi|134291651|ref|YP_001115420.1| AraC family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134840|gb|ABO59165.1| transcriptional regulator, AraC family [Burkholderia vietnamiensis G4] Length=365 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 119/334 (36%), Positives = 178/334 (54%), Gaps = 11/334 (3%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGVP A +LAGT + A LDDP+A V A E+ L+ L Sbjct 28 TRSPASA-RLLVDFGDERGVPHARLLAGTGLADAQLDDPNAEVTAAQELRLTGNLVRALG 86 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G + G R+ + +G++G+ +++ T R+ L +AMR+ LT + IT E Sbjct 87 RAPGLGFEAGQRYHFSAYGVWGYGLIASATARDALALAMRFLPLTYAYTVITYREEPHTG 146 Query 130 LVELDASHLPADVRGFFIERDI--AGIIATTTSFALPLAAKYADQVSAELAVDAELLRPL 187 ++ A L AD+ F +ERD+ A ++ +++ Q ++ + A + Sbjct 147 VLNFGAPELEADLSRFLVERDMAAAAVLLQEIGGGDFRLSRFTMQAASAPSGAAPR---I 203 Query 188 LELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITAL 247 + PV FG N + F R D PLP A+ T+ MC C L+ R G + Sbjct 204 AGIEPV----FGARANSLGFDRTFLDRPLPHANPLTVSMCEQMCAHLLDARRARIGTAEM 259 Query 248 VRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNV 306 VR L G P + D+A ++ PRTL+RRL EEGT+FR LL EAR +A LL + Sbjct 260 VRQYLTATPGNVPFSLDDIARLMNTSPRTLKRRLQEEGTTFRTLLAEARGAMAEALLGDA 319 Query 307 GLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 L + +V+ RLG++++S+FS AFKRWYGV P Y Sbjct 320 HLPLTEVAERLGFSDLSSFSQAFKRWYGVPPGAY 353 >gi|116050043|ref|YP_791143.1| AraC family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585264|gb|ABJ11279.1| putative transcriptional regulator, AraC family [Pseudomonas aeruginosa UCBPP-PA14] Length=344 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 120/341 (36%), Positives = 175/341 (52%), Gaps = 10/341 (2%) Query 6 PPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLL 65 PP R + +L + +RG+ LAG+ ++ L DP + A E++ VR L+ Sbjct 4 PPWSPRRSAISAHLLIQFGIDRGLGLEQCLAGSGLDIRLLGDPSGEIDAAQELSVVRNLV 63 Query 66 ARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFET 125 L D G+ G R+ L +G++GFA++S T + +RY LT I L Sbjct 64 RHLGDACAPGLAAGLRYHLNAYGIWGFALLSSPTFLSAAQLGLRYLDLTFAFHGIRLEVH 123 Query 126 ADDCLVELDASHLPADVRGFFIERDIAGIIATT---TSFALPLAAKYADQVSAELAVDAE 182 D+ + LD + +P D+R F +ERD G++ T LP+ A A A Sbjct 124 DDEAHLVLDDAGIPEDLRIFLLERDAGGVLRIQRDLTGQRLPIL--RAGFRRPPPADPAP 181 Query 183 LLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRR 242 +R L L P AFG+A NRV F R D PLP A+ C QC L+ R + R Sbjct 182 YVREL-GLCP----AFGQADNRVVFERRFLDLPLPGANPEVARACEEQCRALLARRQVRG 236 Query 243 GITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDL 302 G+ +R +L R G P +A EL + RTLRRRL +EG+S+R LL E R +A +L Sbjct 237 GLAGRIRDRLLRTPGHLPDMQTLAMELHLTVRTLRRRLDDEGSSYRLLLDEVRQALAEEL 296 Query 303 LRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRR 343 L + +++++ RLGY EVS F HAF+RW G+ P +Y +R Sbjct 297 LATGAIRLEEIAERLGYGEVSNFIHAFRRWKGMTPRQYRQR 337 >gi|107101524|ref|ZP_01365442.1| hypothetical protein PaerPA_01002567 [Pseudomonas aeruginosa PACS2] gi|218891947|ref|YP_002440814.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235131|ref|ZP_04928454.1| hypothetical protein PACG_01015 [Pseudomonas aeruginosa C3719] gi|126167062|gb|EAZ52573.1| hypothetical protein PACG_01015 [Pseudomonas aeruginosa C3719] gi|218772173|emb|CAW27952.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length=344 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 120/341 (36%), Positives = 175/341 (52%), Gaps = 10/341 (2%) Query 6 PPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLL 65 PP R + +L + +RG+ LAG+ ++ L DP + A E++ VR L+ Sbjct 4 PPWSPRRSAISAHLLIQFGIDRGLGLEQCLAGSGLDIRLLGDPSGEIDAAQELSVVRNLV 63 Query 66 ARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFET 125 L D G+ G R+ L +G++GFA++S T + +RY LT I L Sbjct 64 RHLGDACAPGLAAGLRYHLNAYGIWGFALLSSPTFLSAAQLGLRYLDLTFAFHGIRLEVH 123 Query 126 ADDCLVELDASHLPADVRGFFIERDIAGIIATT---TSFALPLAAKYADQVSAELAVDAE 182 D+ + LD + +P D+R F +ERD G++ T LP+ A A A Sbjct 124 DDEAHLVLDDAGIPEDLRIFLLERDAGGVLRIQRDLTGQRLPIL--RAGFRRPPPADPAP 181 Query 183 LLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRR 242 +R L L P AFG+A NRV F R D PLP A+ C QC L+ R + R Sbjct 182 YVREL-GLCP----AFGQADNRVVFERRFLDLPLPGANPEVARACEEQCRALLARRQVRG 236 Query 243 GITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDL 302 G+ +R +L R G P +A EL + RTLRRRL +EG+S+R LL E R +A +L Sbjct 237 GLAGRIRDRLLRTPGHLPDMQTLAMELHLTVRTLRRRLDDEGSSYRLLLDEVRQALAEEL 296 Query 303 LRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRR 343 L + +++++ RLGY EVS F HAF+RW G+ P +Y +R Sbjct 297 LATGAIRLEEIAERLGYGEVSNFIHAFRRWKGMTPRQYRQR 337 >gi|167567440|ref|ZP_02360356.1| transcriptional regulator, AraC family protein [Burkholderia oklahomensis EO147] Length=357 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 115/340 (34%), Positives = 185/340 (55%), Gaps = 12/340 (3%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P + R++ + ER + A +LAG + A LDDP+ V A E+ LL L Sbjct 7 TRSPA-SVRLMVDFGAERALAEAQLLAGAGLSVAQLDDPNVKVTAAQELRVASNLLRLLR 65 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 AG+G+ VG R+ + +GL+G+ +++ T + L +A+R+ LT IT D Sbjct 66 HPAGLGLQVGLRYHFSAYGLWGYGLIASATAGDALALALRFLPLTYAFTAITYHHDGDLG 125 Query 130 LVELDASHLPADVRGFFIERDIAGIIA-----TTTSFALPLAAKYADQVSAELAVDAELL 184 ++ L +++ F +ERD+A +FAL + +D+ + E A+ AE+ Sbjct 126 VLTFGEPELADEMKRFVVERDMAAAAVLLHEIGGDAFALTRFSLKSDRGALESALAAEIR 185 Query 185 RPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI 244 R L + P A+ N + F +A+ PLPQA+ T+ MC C L++ R G Sbjct 186 RAL-GVAP----AYSARSNSLAFEQALLSRPLPQANPITVSMCEQMCQRLIEERRLRLGT 240 Query 245 TALVRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLL 303 A++R + G+ P T D+A ++ PRTL+RRL +EGT+FRALL AR +A +LL Sbjct 241 AAMIRHYMSAVPGIVPSTLDDMARLMNTSPRTLKRRLQDEGTTFRALLAGARGAMASELL 300 Query 304 RNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRR 343 + L + +++ RLG++++S+FS AFKRW G+APS + R Sbjct 301 TDTDLPLSEIAERLGFSDLSSFSQAFKRWQGMAPSVFRSR 340 >gi|238023348|ref|YP_002907581.1| AraC family transcriptional regulator [Burkholderia glumae BGR1] gi|237880401|gb|ACR32731.1| Transcriptional regulator, AraC family [Burkholderia glumae BGR1] Length=350 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/334 (36%), Positives = 180/334 (54%), Gaps = 12/334 (3%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGV A +LAGT + A LDDP+ V A E+ LL L Sbjct 7 TRSPASA-RLLVDFGDERGVSHAALLAGTGLTDAQLDDPNVEVTAAQELRLTGNLLRSLG 65 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 AG+G +VG R+ + +G++G+ +++ T R+ L +AMR+ LT IT E D Sbjct 66 HPAGLGFEVGLRYHFSAYGVWGYGLIASATARDALALAMRFLPLTYAFTVITYREEPDAG 125 Query 130 LVELDASHLPADVRGFFIERDIAG---IIATTTS--FALPLAAKYADQVSAELAVDAELL 184 ++ A LP + F +ERD+A ++ T FAL A + + A +L Sbjct 126 VLNFGAPELPDALSRFCVERDMAAAAMLLQDTAGGDFALSRFTVQAARATPARHTTAPVL 185 Query 185 RPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI 244 R + + +G N + F RA D PLP A+ T+ MC C L+ R G Sbjct 186 R-----IGGVEPEYGARSNSLAFARAYLDRPLPHANPITVSMCEQMCSRLLDARRARIGT 240 Query 245 TALVRSKLFRD-SGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLL 303 + ++R L G + ++A ++ RTL+RRL E+GT+FR LL E+RS +A LL Sbjct 241 STMIRHYLNATWGGASLSLEEMARMMNTSARTLKRRLQEDGTTFRTLLNESRSAMAETLL 300 Query 304 RNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAP 337 + LT+ +++ RLG++++S+FS AFKRWYGVAP Sbjct 301 SDAHLTLTEIAERLGFSDLSSFSQAFKRWYGVAP 334 >gi|149925894|ref|ZP_01914157.1| putative transcriptional regulator, AraC family protein [Limnobacter sp. MED105] gi|149825182|gb|EDM84393.1| putative transcriptional regulator, AraC family protein [Limnobacter sp. MED105] Length=340 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 109/331 (33%), Positives = 174/331 (53%), Gaps = 6/331 (1%) Query 11 RHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPD 70 R V + ++LCE+ G + +L G++I PA LDDP + E+ + L+ Sbjct 4 RRTVVSVKILCELGIRLGSTRSALLTGSSILPAQLDDPHLEIDPDQELQVIHNLVRLHGK 63 Query 71 DAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCL 130 G+G+ GS + LT +G++G+A+++ T R+ + + +RY LT + L Sbjct 64 VPGLGLMAGSEYHLTTYGIWGYALITSPTFRQAVELGLRYLDLTFAFSKVELALGNGLAS 123 Query 131 VELDASHLPADVRGFFIERDIAGI-IATTTSFALPLAAKYADQVSAELAVDAELLRPLLE 189 + L HLP VR F ERD + I + F + L + + A A A+ + Sbjct 124 MILSVDHLPPAVRSFVAERDCSAIQVLQRELFGVSLPLRVVEFAFAPNAPMAQY-EAMFG 182 Query 190 LVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVR 249 +P F + NR F + PLP+A+ H+ C Q + L+ R +R G++A +R Sbjct 183 CIP----QFNASVNRATFDEQWLNLPLPKANEHSARFCETQLENLLSRRMQRGGVSAWLR 238 Query 250 SKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLT 309 +KL D P+ +A + M RTLRRRL +EGTS+R LL E R T+A +LL + GL+ Sbjct 239 NKLLADLSSSPSLAQIATDHFMTERTLRRRLTDEGTSYRDLLAEVRQTMAEELLSSTGLS 298 Query 310 VQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 V +VS RLGY+ S F HAF++W+ +P ++ Sbjct 299 VSEVSARLGYSSPSAFIHAFQKWHNCSPRQF 329 >gi|330821759|ref|YP_004350621.1| Transcriptional regulator, AraC family protein [Burkholderia gladioli BSR3] gi|327373754|gb|AEA65109.1| Transcriptional regulator, AraC family protein [Burkholderia gladioli BSR3] Length=350 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 119/334 (36%), Positives = 182/334 (55%), Gaps = 6/334 (1%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P + R+L + ER VP A +LAGT + A L DP+ V A E+ LL L Sbjct 7 TRSPA-SVRLLVDFGGERDVPHATLLAGTGLTQAQLGDPNVEVTAAQELGVAGNLLRALG 65 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G++VG R+ + +G++G+ +++ T R+ L +AMR+ LT IT E D Sbjct 66 HPNGLGLEVGLRYHFSTYGVWGYGLIASATARDALALAMRFLPLTYAFTVITYREEPDAG 125 Query 130 LVELDASHLPADVRGFFIERDI--AGIIATTTSFALPLAAKYADQVSAELAVDAELLRPL 187 ++E DA LP + F +ERD+ A ++ T+ A + +++ Q +A P Sbjct 126 ILEFDAPALPVALSRFCVERDMAAAAMLLQETAGADSVLSRFTLQ-AARATSARHATTPA 184 Query 188 LELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITAL 247 L + V ++ +G N + F R D LP A+ T+ MC C L+ R G + + Sbjct 185 LRIGGV-ELEYGARSNSLVFERTYLDRQLPHANPITVSMCEQMCRRLLDARRARVGTSTM 243 Query 248 VRSKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNV 306 VR L P + ++A + RTL+RRL E+GT+FR LL E+RS +A LL +V Sbjct 244 VRHYLNAGWDGRPLSLEEMARMMSTSTRTLKRRLQEDGTTFRTLLNESRSAMAETLLSDV 303 Query 307 GLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 LT+ +++ RLGY+++S+FS AFKRWYGVAP Y Sbjct 304 RLTLTEIAERLGYSDLSSFSQAFKRWYGVAPQVY 337 >gi|167574348|ref|ZP_02367222.1| transcriptional regulator, AraC family protein [Burkholderia oklahomensis C6786] Length=340 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 171/340 (51%), Gaps = 26/340 (7%) Query 12 HPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDD 71 PV TRVL +V E+G+ L G+ + P LD P+A V A E+ VR L+ L D Sbjct 12 RPVNTTRVLVDVGVEQGLGVRQCLDGSGVAPELLDRPEATVAAAQELRIVRNLMRLLGPD 71 Query 72 AGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLV 131 +GI++G R+ T +G++GFA++S T + +++ +RY LT+ DI +D + Sbjct 72 FPLGIEIGRRYHATAYGIWGFALLSSATFADAVSVGLRYLQLTSTFCDIRPTARGEDATL 131 Query 132 ELDASHLPADVRGFFIERDIAGIIATTTSF---ALPL--------AAKYADQVSAELAVD 180 +D LP DVR +E +A +I LP+ A YAD+ A Sbjct 132 VIDDHDLPGDVRDVLVEITVAALITLQVDLDAANLPVKRLAFKMEAPSYADRFRTLFAAS 191 Query 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 E FG A N + D LPQ + T +C +C +++R R Sbjct 192 PE---------------FGAAENALTVDVRCLDLKLPQRNSLTRRLCEDECRRVLERRRR 236 Query 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 G VR L DS PT +A EL + RTLRRRLA EGT + ++ E R T+A Sbjct 237 SEGWAGRVRRHLAGDSARRPTMAALAAELGVSARTLRRRLAGEGTDYETVVDEIRETLAE 296 Query 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 +LL LTV ++S RLGY+E S F+ AF+RW ++PSEY Sbjct 297 ELLATTTLTVAEISERLGYSEPSAFARAFRRWKAMSPSEY 336 >gi|78063359|ref|YP_373267.1| AraC family transcriptional regulator [Burkholderia sp. 383] gi|77971244|gb|ABB12623.1| transcriptional regulator, AraC family [Burkholderia sp. 383] Length=343 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/332 (36%), Positives = 176/332 (54%), Gaps = 7/332 (2%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 R P A R+L + +ERGVP A +LAGT + A LDDP V A E+ LL L Sbjct 7 TRSPASA-RLLVDFGDERGVPHATLLAGTGLADAQLDDPKVEVTAAQELRLTGNLLRALG 65 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 G+G +VG R+ + +G++G+ +++ T R+ L +A+R+ LT IT E C Sbjct 66 RVPGLGFEVGQRYHFSAYGVWGYGLIASATARDALALALRFLPLTYAFTVITYREEDGTC 125 Query 130 LVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLE 189 ++ A L + F +ERD+ + AT + A + + + A + P Sbjct 126 VLGFGAPELDGTLSRFVVERDM--MAATVLLQEIGGDAFALSRFTVQAARTPAMAVP--R 181 Query 190 LVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVR 249 + V V RA N + F R D LP A+ T+ MC C L+ R G + +VR Sbjct 182 IAGVEPVFSARA-NSLAFDRVFLDRLLPHANPLTVSMCEQMCGQLLDARRARVGTSEMVR 240 Query 250 SKLFRDSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGL 308 L G P + D+A ++ PRTL+RRL EEGT+FRALL +AR +A LL + L Sbjct 241 QYLTATPGSAPFSLEDMARLMNTSPRTLKRRLQEEGTTFRALLAQARGAMAETLLGDARL 300 Query 309 TVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 ++ +V+ RLG++++S+FS AFKRWYGV P Y Sbjct 301 SLAEVAERLGFSDLSSFSQAFKRWYGVPPGAY 332 >gi|146306919|ref|YP_001187384.1| AraC family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575120|gb|ABP84652.1| transcriptional regulator, AraC family [Pseudomonas mendocina ymp] Length=360 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 113/343 (33%), Positives = 175/343 (52%), Gaps = 12/343 (3%) Query 4 LPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRR 63 + PP R + + ++L ++ + G+ L T ++P L V A E+ + Sbjct 24 MSPPWPPRRSIVSIQLLTQLGLDLGLNLDVCLKDTGLDPMQLASLHGEVDAERELRLIAN 83 Query 64 LLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLF 123 LL LPD +G+ G R+ LT +G +G+A++S T+R+ + +RY LT I+L Sbjct 84 LLEALPDLGDLGLQAGRRYHLTTYGAWGYAILSSATVRQAAELGLRYHGLTYAFTRISLN 143 Query 124 ETADDCLVELDASHLPADVRGFFIERDIAG-IIATTTSFALPLAAKYADQVSAELAVDAE 182 + D S LP + F ++RD+ G ++ PL + V A ++ Sbjct 144 LKDGVASLHFDDSALPPALHDFIVQRDMLGALVVVRELLGSPLPIR---SVELRQATPSD 200 Query 183 LLRPLLEL---VPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNE 239 + P +E VP FG HNR+ F + D+PLP+A+ + C QC +L+ R++ Sbjct 201 M-TPFVEAFGQVP----HFGAQHNRLGFSADLLDDPLPRANSQLVSACERQCQMLLARHQ 255 Query 240 RRRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVA 299 +G+ VR L + G VA L + RTLRRRL EEG+SFRAL E R +A Sbjct 256 WHQGVAGRVRQLLLQTPGQMADMEQVASRLHLSSRTLRRRLIEEGSSFRALQDEVREALA 315 Query 300 VDLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 +LL GL++++++ RLGY E+S F HAFKRW G P Y R Sbjct 316 DELLAAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRYQR 358 >gi|54025762|ref|YP_120004.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017270|dbj|BAD58640.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=386 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/334 (37%), Positives = 176/334 (53%), Gaps = 5/334 (1%) Query 9 EVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARL 68 E R V + VL EVA E G+ L GT I+PA L+ PD V A E+ VR ++ L Sbjct 7 EWRRTVGLSAVLVEVAAEHGLGVRACLRGTGIDPALLNTPDGEVTAAQELALVRNIVTAL 66 Query 69 PDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADD 128 D G+G+ G+R +T +G G A+++ T+R + + MRY +TT I D+ Sbjct 67 GDPPGLGLAAGARTHVTSYGALGLALLASPTVRSAVDLLMRYIRMTTTFARIWHVYRDDE 126 Query 129 CLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLL 188 + D S +PA++RGF +ERD+ ++A + A VS L L+PL+ Sbjct 127 LHLYADDSDVPAELRGFLLERDVTVLLANWAAVYHAPAPVLRGSVSGGL---RPRLQPLI 183 Query 189 ELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALV 248 + + D G + V F + F++PLPQA T + QC L+ R R GI V Sbjct 184 DEYGL-DCVDGVGPHLVVFDTSGFEDPLPQASPLTARLFEQQCAQLLHRRGLRHGIAGTV 242 Query 249 RSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGL 308 R L R G ++A L M RTLRRRLAEEGTS+R L + +A +LL GL Sbjct 243 REVLLRRMGERVGQEEMAALLHMSLRTLRRRLAEEGTSYRGLCSQTYGELAEELLAG-GL 301 Query 309 TVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 TV+ V+ R+GY +FS AFK+W G++P ++R Sbjct 302 TVEDVAYRMGYAGAPSFSTAFKQWRGISPGHFAR 335 >gi|319948386|ref|ZP_08022527.1| transcriptional regulator, AraC family protein [Dietzia cinnamea P4] gi|319437940|gb|EFV92919.1| transcriptional regulator, AraC family protein [Dietzia cinnamea P4] Length=350 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 172/340 (51%), Gaps = 6/340 (1%) Query 6 PPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLL 65 P +V R++ E A +G+ T LAGT I+P DL D +A + A E +R +L Sbjct 15 PVWDVPRGTEGVRIMVEGAVAQGMTTTRCLAGTGIQPPDLADENAQIWAHQEFAVIRNIL 74 Query 66 ARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFET 125 RL D G+G+ +G+ + G+ GF +++ T+R L A+ Y AL+ H+ L E Sbjct 75 GRLGDRPGLGVGIGAYSTIGRTGVIGFMMLAGPTVRAALERAIPYLALSPTHLRFAL-EE 133 Query 126 ADDCLVELDAS-HLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELL 184 D + + A +P DVR F +ERD+AG+ + L + + Sbjct 134 GDGVVYAVAADDEIPPDVRAFVVERDLAGLAVAFRGAQIDLQLAGIETTLGAASAALLAE 193 Query 185 RPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI 244 LE V NR+ PR DE LPQAD +T + QC ++ R G+ Sbjct 194 AWRLEPAAVVPRCV---TNRLVIPRERLDERLPQADENTARLFEQQCREVLDARLARVGV 250 Query 245 TALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLR 304 VRS+L + G +P+ DVA +L RTLRRRL EGTSFR L+ E R A++LL Sbjct 251 AGQVRSRLRHERGDWPSMADVAADLHFDERTLRRRLTVEGTSFRRLVDEVRHARALELL- 309 Query 305 NVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 G V +V+ LGY+E +TF+ +F RW GV+PS RG Sbjct 310 GQGAAVSEVARELGYSETATFTRSFTRWEGVSPSRLRERG 349 >gi|167562354|ref|ZP_02355270.1| transcriptional regulator, AraC family protein [Burkholderia oklahomensis EO147] Length=340 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 170/340 (50%), Gaps = 26/340 (7%) Query 12 HPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDD 71 PV TRVL +V E+G+ L G+ + P LD P+A V A E+ VR L+ L D Sbjct 12 RPVNTTRVLVDVGVEQGLGVCQCLDGSGVAPELLDRPEAAVAAAQELRIVRNLMRLLGPD 71 Query 72 AGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLV 131 +GI+ G R+ T +G++GFA++S T + +++ +RY LT+ DI +D + Sbjct 72 FPLGIETGRRYHATAYGIWGFALLSSATFADAVSVGLRYLQLTSTFCDIRPTVRGEDATL 131 Query 132 ELDASHLPADVRGFFIERDIAGIIATTTSF---ALPL--------AAKYADQVSAELAVD 180 +D LP DVR +E +A +I LP+ A YAD+ A Sbjct 132 VIDDHDLPGDVRDVLVEITVAALITLQVDLDAANLPVKRLAFKMEAPSYADRFRTLFAAS 191 Query 181 AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER 240 E FG A N + D LPQ + T +C +C +++R R Sbjct 192 PE---------------FGAAENALTVDVRCLDLKLPQRNSLTRRLCEDECRRVLERRRR 236 Query 241 RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV 300 G VR L DS PT +A EL + RTLRRRLA EGT + ++ E R T+A Sbjct 237 SEGWAGRVRRHLAGDSARRPTMAALAAELGVSARTLRRRLAGEGTDYETVVDEIRETLAE 296 Query 301 DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 +LL LTV ++S RLGY+E S F+ AF+RW ++PSEY Sbjct 297 ELLATTTLTVAEISERLGYSEPSAFARAFRRWKAMSPSEY 336 >gi|167574874|ref|ZP_02367748.1| transcriptional regulator, AraC family protein [Burkholderia oklahomensis C6786] Length=342 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/330 (34%), Positives = 178/330 (54%), Gaps = 11/330 (3%) Query 20 LCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVG 79 + + ER + A +LAG + A LDDP+ V A E+ L L AG+G+ VG Sbjct 1 MVDFGAERALAEAQLLAGAGLSVAQLDDPNVKVTAAQELRVASNLQRLLRHPAGLGLQVG 60 Query 80 SRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLP 139 R+ + +GL+G+ +++ T + L +A+R+ LT IT D ++ L Sbjct 61 LRYHFSAYGLWGYGLIASATAGDALALALRFLPLTYAFTAITYHHDGDLGVLTFGEPELA 120 Query 140 ADVRGFFIERDIAGIIA-----TTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVH 194 +++ F +ERD+A +FAL + D+ + E A+ AE+ R L + P Sbjct 121 DEMKRFVVERDMAAAAVLLHEIGGDAFALTRFSLKGDRGALESALAAEIRRAL-GVAP-- 177 Query 195 DVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFR 254 A+ N + F +A+ PLPQA+ T+ MC C L++ R G A++R + Sbjct 178 --AYSARSNSLAFEQALLSRPLPQANPITVSMCEQMCQRLIEERRLRVGTAAMIRHYMSA 235 Query 255 DSGLFP-TFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQV 313 G+ P T D+A ++ PRTL+RRL +EGT+FRALL AR +A +LL + L + ++ Sbjct 236 VPGIVPSTLDDMARLMNTSPRTLKRRLQDEGTTFRALLAGARGAMASELLTDTDLPLSEI 295 Query 314 STRLGYTEVSTFSHAFKRWYGVAPSEYSRR 343 + RLG++++S+FS AFKRW G+APS + R Sbjct 296 AERLGFSDLSSFSQAFKRWQGMAPSAFRSR 325 >gi|83719900|ref|YP_443296.1| AraC family transcriptional regulator [Burkholderia thailandensis E264] gi|83653725|gb|ABC37788.1| transcriptional regulator, AraC family [Burkholderia thailandensis E264] Length=398 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 120/333 (37%), Positives = 173/333 (52%), Gaps = 8/333 (2%) Query 12 HPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDD 71 PV TRVL EV E+G+ L G+ + P LD+PDA V A E+ +R L+ L Sbjct 70 RPVGTTRVLVEVGVEQGLTVDRCLDGSGVAPERLDEPDATVAAAQELRIIRNLMRLLGPA 129 Query 72 AGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLV 131 +GI+VG R+ T +G++GFA+MS T + +++ +RY LT+ DI +D + Sbjct 130 FPLGIEVGRRYHATTYGIWGFALMSSATFGDAVSVGLRYLQLTSTFCDIRPTVRGEDATL 189 Query 132 ELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELA--VDAELLRPLLE 189 +D LP DVR +E +A +I T F L A +++ ++ A R L + Sbjct 190 VIDDRDLPGDVRDVLVEITVAALI--TLQFDLDSANLPVKRLALKMKPPAYAGRFRTLFD 247 Query 190 LVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVR 249 P FG AHN + LPQ + T C +C +++R R G VR Sbjct 248 ASP----EFGAAHNALTVDAHCLALKLPQRNALTRRQCEDECRRVLERRRRSEGWAGRVR 303 Query 250 SKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLT 309 L D PT +A EL + RTLRRRLA+EGT + ++ E R +A LL LT Sbjct 304 RHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATTTLT 363 Query 310 VQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 V +VS RLGY+E S F+ AF+RW ++P+EY R Sbjct 364 VAEVSERLGYSEPSAFARAFRRWKAMSPNEYRR 396 >gi|110835406|ref|YP_694265.1| AraC family transcriptional regulator [Alcanivorax borkumensis SK2] gi|110648517|emb|CAL17993.1| transcriptional regulator, AraC family [Alcanivorax borkumensis SK2] Length=336 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 108/329 (33%), Positives = 165/329 (51%), Gaps = 5/329 (1%) Query 12 HPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDD 71 HPV ++V+ A G+ L GT I ++L + +V E+ + L+ LP+ Sbjct 9 HPVAISQVMLNFAQRNGIDRQTCLLGTGILESELSSGEGLVTRTQEMRLIENLMLALPEV 68 Query 72 AGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLV 131 G ++G ++ L FG++GFA+ +C TLRE + + +RY L+T + I L E D + Sbjct 69 GASGFELGLQYNLATFGVWGFALRTCKTLREAVALGVRYLPLSTAYCRILLCEEEDAFGI 128 Query 132 ELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELV 191 D +P +R F +ERD+A + +L A A + + VDA L+ L + Sbjct 129 TFDPDPIPPHLRQFLLERDMATSLNLAREISLQGAEFKAIEFTGTPDVDAAALKALCGIA 188 Query 192 PVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSK 251 P FG NR+ RA P D M QC M E GI VR K Sbjct 189 PT----FGAGSNRIMVNRAGASRPFSGYDPALTRMLEQQCQQRMDTVE-SSGIAGKVRQK 243 Query 252 LFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQ 311 L + GL + D+A +L + R+LRR+L +EGTS+R L+ E R +A+ LL N + ++ Sbjct 244 LLGELGLGASLNDMARDLALSTRSLRRKLEQEGTSYRDLVEEERRQLALQLLGNTTMKIE 303 Query 312 QVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 +V+ L YT+ F AF+RW G +PS Y Sbjct 304 EVAAHLAYTDAGGFVRAFRRWQGCSPSTY 332 >gi|229592679|ref|YP_002874798.1| putative AraC family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364545|emb|CAY52416.1| putative putative AraC-family regulatory protein [Pseudomonas fluorescens SBW25] Length=384 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 109/336 (33%), Positives = 182/336 (55%), Gaps = 11/336 (3%) Query 10 VRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLP 69 +R P +T ++ E +E+G +L G+ + A L DP+ + A E+ LL Sbjct 51 LRGPT-STLLMVEFGDEKGFRAEKILLGSGLTLAQLTDPNLELTADQELRVAENLLRLSG 109 Query 70 DDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDC 129 AG+G +VG+R+ + +GLFG+ ++S T+ + L +A+R+ LT + E D+ Sbjct 110 HAAGLGFEVGTRYHFSTYGLFGYGLISSATVGDALALALRFLPLTYAFTVVAYEEQGDEG 169 Query 130 LVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLE 189 ++ L D+R F + RD++ AL L + S ++ P+ + Sbjct 170 VLTFAVLGLAPDLREFLLTRDMSAA-------ALLLKELGGNDFSLSRFCLSKQPPPIPD 222 Query 190 LVPVHDVA--FGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITAL 247 V V A + N + F R+ PLPQA+ T+ MC C LMQR G+TAL Sbjct 223 NVKVLGCAPSYAANSNSLAFNRSFLSLPLPQANAVTVSMCEQMCTQLMQRRIAHAGMTAL 282 Query 248 VRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVG 307 V+ L P + ++ L + PRTL+RRL EEGT+FR LL + RS A++LL++ G Sbjct 283 VQHYLNTPDNGMPDLSSISELLHVSPRTLKRRLKEEGTTFRKLLADVRSRNAINLLKD-G 341 Query 308 LTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRR 343 + +++ RLG++++S+FS AFKRW+G++PS++S++ Sbjct 342 HNLTEIAERLGFSDLSSFSQAFKRWHGISPSQFSQQ 377 >gi|167620411|ref|ZP_02389042.1| transcriptional regulator, AraC family protein [Burkholderia thailandensis Bt4] Length=340 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 120/333 (37%), Positives = 173/333 (52%), Gaps = 8/333 (2%) Query 12 HPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDD 71 PV TRVL EV E+G+ L G+ + P LD+PDA V A E+ +R L+ L Sbjct 12 RPVGTTRVLVEVGVEQGLTVDRCLDGSGVAPERLDEPDATVAAAQELRIIRNLMRLLGPA 71 Query 72 AGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLV 131 +GI+VG R+ T +G++GFA+MS T + +++ +RY LT+ DI +D + Sbjct 72 FPLGIEVGRRYHATTYGIWGFALMSSATFGDAVSVGLRYLQLTSTFCDIRPTVRGEDATL 131 Query 132 ELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELA--VDAELLRPLLE 189 +D LP DVR +E +A +I T F L A +++ ++ A R L + Sbjct 132 VIDDRDLPGDVRDVLVEITVAALI--TLQFDLDSANLPVKRLALKMKPPAYAGRFRALFD 189 Query 190 LVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVR 249 P FG AHN + LPQ + T C +C +++R R G VR Sbjct 190 ASP----EFGAAHNALTVDAHCLALKLPQRNALTRRQCEDECRRVLERRRRSEGWAGRVR 245 Query 250 SKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLT 309 L D PT +A EL + RTLRRRLA+EGT + ++ E R +A LL LT Sbjct 246 RHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATTTLT 305 Query 310 VQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 V +VS RLGY+E S F+ AF+RW ++P+EY R Sbjct 306 VAEVSERLGYSEPSAFARAFRRWKAMSPNEYRR 338 >gi|257139532|ref|ZP_05587794.1| AraC family transcriptional regulator [Burkholderia thailandensis E264] Length=340 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 120/333 (37%), Positives = 173/333 (52%), Gaps = 8/333 (2%) Query 12 HPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDD 71 PV TRVL EV E+G+ L G+ + P LD+PDA V A E+ +R L+ L Sbjct 12 RPVGTTRVLVEVGVEQGLTVDRCLDGSGVAPERLDEPDATVAAAQELRIIRNLMRLLGPA 71 Query 72 AGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLV 131 +GI+VG R+ T +G++GFA+MS T + +++ +RY LT+ DI +D + Sbjct 72 FPLGIEVGRRYHATTYGIWGFALMSSATFGDAVSVGLRYLQLTSTFCDIRPTVRGEDATL 131 Query 132 ELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELA--VDAELLRPLLE 189 +D LP DVR +E +A +I T F L A +++ ++ A R L + Sbjct 132 VIDDRDLPGDVRDVLVEITVAALI--TLQFDLDSANLPVKRLALKMKPPAYAGRFRTLFD 189 Query 190 LVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVR 249 P FG AHN + LPQ + T C +C +++R R G VR Sbjct 190 ASP----EFGAAHNALTVDAHCLALKLPQRNALTRRQCEDECRRVLERRRRSEGWAGRVR 245 Query 250 SKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLT 309 L D PT +A EL + RTLRRRLA+EGT + ++ E R +A LL LT Sbjct 246 RHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATTTLT 305 Query 310 VQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 V +VS RLGY+E S F+ AF+RW ++P+EY R Sbjct 306 VAEVSERLGYSEPSAFARAFRRWKAMSPNEYRR 338 >gi|167582314|ref|ZP_02375188.1| transcriptional regulator, AraC family protein [Burkholderia thailandensis TXDOH] Length=340 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 120/333 (37%), Positives = 173/333 (52%), Gaps = 8/333 (2%) Query 12 HPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDD 71 PV TRVL EV E+GV L G+ + P LD+PDA V A E+ +R L+ L Sbjct 12 RPVGTTRVLVEVGVEQGVTVDRCLDGSGVAPERLDEPDATVAAAQELRIIRNLMRLLGPA 71 Query 72 AGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLV 131 +GI+VG R+ T +G++GFA++S T + +++ +RY LT+ DI +D + Sbjct 72 FPLGIEVGRRYHATTYGIWGFALLSSATFGDAVSVGLRYLQLTSTFCDIRPTVRGEDATL 131 Query 132 ELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELA--VDAELLRPLLE 189 +D LP DVR +E +A +I T F L A +++ ++ A R L + Sbjct 132 VIDDRDLPGDVRDVLVEITVAALI--TLQFDLDSANLPVKRLALKMKPPAYAGRFRTLFD 189 Query 190 LVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVR 249 P FG AHN + LPQ + T C +C +++R R G VR Sbjct 190 ASP----EFGAAHNALTVDAHCLALKLPQRNALTRRQCEDECRRVLERRRRSEGWAGRVR 245 Query 250 SKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLT 309 L D PT +A EL + RTLRRRLA+EGT + ++ E R +A LL LT Sbjct 246 RHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATTTLT 305 Query 310 VQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 V +VS RLGY+E S F+ AF+RW ++P+EY R Sbjct 306 VAEVSERLGYSEPSAFARAFRRWKAMSPNEYRR 338 >gi|53725566|ref|YP_102532.1| AraC family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|121600383|ref|YP_992615.1| AraC family transcriptional regulator [Burkholderia mallei SAVP1] gi|124386195|ref|YP_001026583.1| AraC family transcriptional regulator [Burkholderia mallei NCTC 10229] 20 more sequence titles Length=340 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/333 (37%), Positives = 176/333 (53%), Gaps = 8/333 (2%) Query 12 HPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDD 71 PV TRVL +V E+G+ L G+ + LD PDA V A E+ VR L+ L D Sbjct 12 RPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAAQELRIVRNLMRLLGPD 71 Query 72 AGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLV 131 +GI++G R+ T +G++GFA+MS T + +++ +RY LT+ +I DD + Sbjct 72 FPLGIEIGRRYHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEIRPTLRGDDATL 131 Query 132 ELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD--AELLRPLLE 189 +D LP DVR +E +A +I T F L A +++ ++ A R L + Sbjct 132 VIDDRDLPGDVRDVLVEITVAALI--TLQFDLDAANLPVKRLALKMKPPSYAGRFRTLFD 189 Query 190 LVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVR 249 P FG AHN + D LPQ + T C +C +++R+ R G VR Sbjct 190 ATP----EFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRRVLERHRRSEGWAGRVR 245 Query 250 SKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLT 309 +L D PT +A EL + PRTLRRRLA EGT + ++ E R +A LL LT Sbjct 246 RQLAGDPARGPTMDVLAAELGLSPRTLRRRLANEGTDYETVVDELRQALAEALLATTTLT 305 Query 310 VQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 + +VS RLGY+E S F+ AF+RW G++PSEY R Sbjct 306 LAEVSERLGYSEPSAFARAFRRWKGMSPSEYRR 338 >gi|126441580|ref|YP_001058516.1| AraC family transcriptional regulator [Burkholderia pseudomallei 668] gi|126221073|gb|ABN84579.1| transcriptional regulator, AraC family [Burkholderia pseudomallei 668] Length=340 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/333 (37%), Positives = 176/333 (53%), Gaps = 8/333 (2%) Query 12 HPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDD 71 PV TRVL +V E+G+ L G+ + LD PDA V A E+ VR L+ L D Sbjct 12 RPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAAQELRIVRNLMRLLGPD 71 Query 72 AGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLV 131 +GI++G R+ T +G++GFA+MS T + +++ +RY LT+ +I DD + Sbjct 72 FPLGIEIGRRYHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEIRPTLRGDDATL 131 Query 132 ELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD--AELLRPLLE 189 +D LP DVR +E +A +I T F L A +++ ++ A R L + Sbjct 132 VIDDRDLPGDVRDVLVEITVAALI--TLQFDLDAANLPVKRLALKMKPPSYAGRFRTLFD 189 Query 190 LVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVR 249 P FG AHN + D LPQ + T C +C +++R+ R G VR Sbjct 190 ATP----EFGAAHNALTVGARCLDLKLPQRNALTRRRCEDECRRVLERHRRSEGWAGRVR 245 Query 250 SKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLT 309 +L D PT +A EL + PRTLRRRLA EGT + ++ E R +A LL LT Sbjct 246 RQLAGDPARGPTMDVLAAELGLSPRTLRRRLANEGTDYETVVDELRQALAEALLATTTLT 305 Query 310 VQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSR 342 + +VS RLGY+E S F+ AF+RW G++PSEY R Sbjct 306 LAEVSERLGYSEPSAFARAFRRWKGMSPSEYRR 338 Lambda K H 0.325 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 629895873072 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40