BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1396c

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57116861|ref|YP_177809.1|  PE-PGRS family protein [Mycobacteri...   945    0.0  
gi|148661187|ref|YP_001282710.1|  PE-PGRS family protein [Mycobac...   944    0.0  
gi|148822616|ref|YP_001287370.1|  PE-PGRS family protein [Mycobac...   942    0.0  
gi|339294375|gb|AEJ46486.1|  PE-PGRS family protein [Mycobacteriu...   937    0.0  
gi|339631463|ref|YP_004723105.1|  PE-PGRS family protein [Mycobac...   933    0.0  
gi|254550410|ref|ZP_05140857.1|  PE-PGRS family protein [Mycobact...   179    2e-42
gi|31792590|ref|NP_855083.1|  PE-PGRS family protein [Mycobacteri...   179    2e-42
gi|326903018|gb|EGE49951.1|  PE-PGRS family protein [Mycobacteriu...   177    3e-42
gi|253799554|ref|YP_003032555.1|  PE-PGRS family protein [Mycobac...   177    3e-42
gi|340626410|ref|YP_004744862.1|  PE-PGRS family protein [Mycobac...   177    4e-42
gi|289552831|ref|ZP_06442041.1|  LOW QUALITY PROTEIN: predicted p...   155    3e-35
gi|253797511|ref|YP_003030512.1|  PE-PGRS family protein [Mycobac...   154    3e-35
gi|183980964|ref|YP_001849255.1|  PE-PGRS family protein [Mycobac...   152    1e-34
gi|339631132|ref|YP_004722774.1|  PE-PGRS family protein [Mycobac...   143    8e-32
gi|121636997|ref|YP_977220.1|  PE-PGRS family protein [Mycobacter...   141    3e-31
gi|31792259|ref|NP_854752.1|  PE-PGRS family protein [Mycobacteri...   141    3e-31
gi|339294426|gb|AEJ46537.1|  putative PE family protein [Mycobact...   138    3e-30
gi|339631519|ref|YP_004723161.1|  PE-PGRS family protein [Mycobac...   137    4e-30
gi|183982116|ref|YP_001850407.1|  PE-PGRS family protein [Mycobac...   137    5e-30
gi|339294428|gb|AEJ46539.1|  hypothetical protein CCDC5079_1349 [...   137    5e-30
gi|57116866|ref|YP_177813.1|  PE-PGRS family protein [Mycobacteri...   137    7e-30
gi|121637380|ref|YP_977603.1|  PE-PGRS family protein [Mycobacter...   137    7e-30
gi|339631517|ref|YP_004723159.1|  PE-PGRS family protein [Mycobac...   136    8e-30
gi|339298066|gb|AEJ50176.1|  hypothetical protein CCDC5180_1339 [...   136    8e-30
gi|31792644|ref|NP_855137.1|  PE-PGRS family protein [Mycobacteri...   136    1e-29
gi|339298064|gb|AEJ50174.1|  putative PE family protein [Mycobact...   136    1e-29
gi|183981229|ref|YP_001849520.1|  PE-PGRS family protein [Mycobac...   136    1e-29
gi|148660347|ref|YP_001281870.1|  PE-PGRS family protein [Mycobac...   136    1e-29
gi|31791760|ref|NP_854253.1|  PE-PGRS family protein [Mycobacteri...   136    1e-29
gi|57116755|ref|YP_177739.1|  PE-PGRS family protein [Mycobacteri...   136    1e-29
gi|121636496|ref|YP_976719.1|  PE-PGRS family protein [Mycobacter...   136    1e-29
gi|15839979|ref|NP_335016.1|  PE_PGRS family protein [Mycobacteri...   136    1e-29
gi|183981230|ref|YP_001849521.1|  PE-PGRS family protein [Mycobac...   136    1e-29
gi|224989857|ref|YP_002644544.1|  PE-PGRS family protein [Mycobac...   136    1e-29
gi|254549533|ref|ZP_05139980.1|  PE-PGRS family protein [Mycobact...   135    1e-29
gi|183985289|ref|YP_001853580.1|  PE-PGRS family protein [Mycobac...   135    1e-29
gi|340627504|ref|YP_004745956.1|  PE-PGRS family protein [Mycobac...   135    3e-29
gi|344220317|gb|AEN00948.1|  PE-PGRS family protein [Mycobacteriu...   134    3e-29
gi|183981460|ref|YP_001849751.1|  PE-PGRS family protein [Mycobac...   134    4e-29
gi|340626466|ref|YP_004744918.1|  PE-PGRS family protein [Mycobac...   134    6e-29
gi|340626079|ref|YP_004744531.1|  PE-PGRS family protein [Mycobac...   129    1e-27
gi|183982067|ref|YP_001850358.1|  PE-PGRS family protein [Mycobac...   129    1e-27
gi|339631131|ref|YP_004722773.1|  PE-PGRS family protein [Mycobac...   128    4e-27
gi|148663252|ref|YP_001284775.1|  PE-PGRS family protein [Mycobac...   127    5e-27
gi|341603337|emb|CCC66018.1|  PE-PGRS family protein [Mycobacteri...   127    6e-27
gi|121639312|ref|YP_979536.1|  PE-PGRS family protein [Mycobacter...   127    6e-27
gi|31794568|ref|NP_857061.1|  PE-PGRS family protein [Mycobacteri...   127    6e-27
gi|183982655|ref|YP_001850946.1|  PE-PGRS family protein [Mycobac...   127    7e-27
gi|253799501|ref|YP_003032502.1|  hypothetical protein TBMG_02531...   127    8e-27
gi|57116865|ref|YP_177812.1|  PE-PGRS family protein [Mycobacteri...   126    1e-26


>gi|57116861|ref|YP_177809.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|38490267|emb|CAE55387.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
Length=576

 Score =  945 bits (2442),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 576/576 (100%), Positives = 576/576 (100%), Gaps = 0/576 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA
Sbjct  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120

Query  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180
            DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG
Sbjct  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180

Query  181  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  240
            AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD
Sbjct  181  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  240

Query  241  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR  300
            GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR
Sbjct  241  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR  300

Query  301  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA  360
            GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA
Sbjct  301  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA  360

Query  361  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  420
            GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG
Sbjct  361  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  420

Query  421  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  480
            TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG
Sbjct  421  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  480

Query  481  GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  540
            GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG
Sbjct  481  GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  540

Query  541  NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  576
            NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA
Sbjct  541  NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  576


>gi|148661187|ref|YP_001282710.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|148505339|gb|ABQ73148.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=597

 Score =  944 bits (2439),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 576/576 (100%), Positives = 576/576 (100%), Gaps = 0/576 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  22   MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  81

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA
Sbjct  82   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  141

Query  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180
            DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG
Sbjct  142  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  201

Query  181  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  240
            AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD
Sbjct  202  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  261

Query  241  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR  300
            GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR
Sbjct  262  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR  321

Query  301  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA  360
            GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA
Sbjct  322  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA  381

Query  361  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  420
            GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG
Sbjct  382  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  441

Query  421  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  480
            TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG
Sbjct  442  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  501

Query  481  GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  540
            GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG
Sbjct  502  GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  561

Query  541  NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  576
            NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA
Sbjct  562  NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  597


>gi|148822616|ref|YP_001287370.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|294994958|ref|ZP_06800649.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
 gi|148721143|gb|ABR05768.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|339298012|gb|AEJ50122.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5180]
 gi|344219226|gb|AEM99856.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=576

 Score =  942 bits (2435),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 575/576 (99%), Positives = 575/576 (99%), Gaps = 0/576 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQAL TQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA
Sbjct  61   TYQALSTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120

Query  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180
            DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG
Sbjct  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180

Query  181  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  240
            AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD
Sbjct  181  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  240

Query  241  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR  300
            GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR
Sbjct  241  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR  300

Query  301  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA  360
            GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA
Sbjct  301  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA  360

Query  361  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  420
            GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG
Sbjct  361  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  420

Query  421  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  480
            TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG
Sbjct  421  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  480

Query  481  GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  540
            GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG
Sbjct  481  GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  540

Query  541  NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  576
            NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA
Sbjct  541  NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  576


>gi|339294375|gb|AEJ46486.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5079]
Length=576

 Score =  937 bits (2422),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 573/576 (99%), Positives = 574/576 (99%), Gaps = 0/576 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQAL TQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIG+GA
Sbjct  61   TYQALSTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGNGA  120

Query  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180
            DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG
Sbjct  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180

Query  181  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  240
            AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD
Sbjct  181  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  240

Query  241  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR  300
            GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR
Sbjct  241  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR  300

Query  301  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA  360
            GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA
Sbjct  301  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA  360

Query  361  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  420
            GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG
Sbjct  361  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  420

Query  421  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  480
            TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG
Sbjct  421  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  480

Query  481  GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  540
            GRGGAAGLIGDAGTGGTGG GGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG
Sbjct  481  GRGGAAGLIGDAGTGGTGGNGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  540

Query  541  NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  576
            NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA
Sbjct  541  NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  576


>gi|339631463|ref|YP_004723105.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|339330819|emb|CCC26490.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=576

 Score =  933 bits (2412),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 572/576 (99%), Positives = 572/576 (99%), Gaps = 0/576 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQAL TQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA
Sbjct  61   TYQALSTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120

Query  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180
            DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG
Sbjct  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180

Query  181  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  240
            AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD
Sbjct  181  AGGWLWGNGGAGGNGGVGVAGDPGGVGGAGGAGGAAGLWGSGGSGGTGGQGGVGGGKSGD  240

Query  241  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGR  300
            GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGG 
Sbjct  241  GGTGGIGGAGGGGGWLHGDGGAGGHGGQGGTGVSSGGNGGAGGTGGDGRGLSGSGGAGGH  300

Query  301  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGNGGQGAISGAGGAGGNAWLIGDGGA  360
            GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGG GGQGAISGAGGAGGNAWLIGDGGA
Sbjct  301  GGQTGVGGKVGENNFGGAGGAGGTGGLIGNGGAGGTGGQGAISGAGGAGGNAWLIGDGGA  360

Query  361  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  420
            GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG
Sbjct  361  GGNGGDIRGQGGGAGGAGGAGGQLIGNGGTGGAGGTVTSPNGLGGAGGAGGSAGLIGHGG  420

Query  421  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  480
            TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG
Sbjct  421  TGGAGGHSAQGPDGNGGIGGAGGAGGNGGQLYGTGGTGGTGGKGGDGFGVFGKGGAGGTG  480

Query  481  GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  540
            GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG
Sbjct  481  GRGGAAGLIGDAGTGGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAG  540

Query  541  NDGTPGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  576
            NDGT GNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA
Sbjct  541  NDGTRGNGGGGGVGGTGGTLFGQPGQPGPPGQPGPA  576


>gi|254550410|ref|ZP_05140857.1| PE-PGRS family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=487

 Score =  179 bits (453),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 120/121 (99%), Positives = 120/121 (99%), Gaps = 0/121 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQAL TQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA
Sbjct  61   TYQALSTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120

Query  121  D  121
            D
Sbjct  121  D  121


>gi|31792590|ref|NP_855083.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|121637326|ref|YP_977549.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989801|ref|YP_002644488.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31618179|emb|CAD94292.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492973|emb|CAL71444.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224772914|dbj|BAH25720.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341601345|emb|CCC64018.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=452

 Score =  179 bits (453),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 120/121 (99%), Positives = 120/121 (99%), Gaps = 0/121 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQAL TQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA
Sbjct  61   TYQALSTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120

Query  121  D  121
            D
Sbjct  121  D  121


>gi|326903018|gb|EGE49951.1| PE-PGRS family protein [Mycobacterium tuberculosis W-148]
Length=577

 Score =  177 bits (450),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 120/121 (99%), Positives = 120/121 (99%), Gaps = 0/121 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQAL TQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA
Sbjct  61   TYQALSTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120

Query  121  D  121
            D
Sbjct  121  D  121


>gi|253799554|ref|YP_003032555.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289554813|ref|ZP_06444023.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|253321057|gb|ACT25660.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439445|gb|EFD21938.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|328459302|gb|AEB04725.1| hypothetical protein TBSG_02596 [Mycobacterium tuberculosis KZN 
4207]
Length=414

 Score =  177 bits (450),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 120/121 (99%), Positives = 120/121 (99%), Gaps = 0/121 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQAL TQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA
Sbjct  61   TYQALSTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120

Query  121  D  121
            D
Sbjct  121  D  121


>gi|340626410|ref|YP_004744862.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004600|emb|CCC43744.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=546

 Score =  177 bits (450),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 120/121 (99%), Positives = 120/121 (99%), Gaps = 0/121 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ
Sbjct  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
            TYQAL TQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA
Sbjct  61   TYQALSTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120

Query  121  D  121
            D
Sbjct  121  D  121


>gi|289552831|ref|ZP_06442041.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis 
KZN 605]
 gi|289437463|gb|EFD19956.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis 
KZN 605]
Length=998

 Score =  155 bits (391),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 80/124 (65%), Positives = 91/124 (74%), Gaps = 1/124 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML  AATDLA IGS   TA   AAAA  +VL A ADEVS AVAALF  HAQ
Sbjct  1    MSFVIATPEMLTTAATDLAKIGST-ITAANTAAAAVAKVLPASADEVSVAVAALFGTHAQ  59

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQ +  Q A FH + VQTL++TA +Y +AEA NVEQ LL A+NAPT AL GRPLIG+GA
Sbjct  60   EYQTVSAQVATFHDRFVQTLSATASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGNGA  119

Query  121  DGAP  124
            DG+P
Sbjct  120  DGSP  123


>gi|253797511|ref|YP_003030512.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|253319014|gb|ACT23617.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|328457295|gb|AEB02718.1| hypothetical protein TBSG_00589 [Mycobacterium tuberculosis KZN 
4207]
 gi|344218399|gb|AEM99029.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=1303

 Score =  154 bits (390),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 80/124 (65%), Positives = 91/124 (74%), Gaps = 1/124 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML  AATDLA IGS   TA   AAAA  +VL A ADEVS AVAALF  HAQ
Sbjct  1    MSFVIATPEMLTTAATDLAKIGST-ITAANTAAAAVAKVLPASADEVSVAVAALFGTHAQ  59

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQ +  Q A FH + VQTL++TA +Y +AEA NVEQ LL A+NAPT AL GRPLIG+GA
Sbjct  60   EYQTVSAQVATFHDRFVQTLSATASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGNGA  119

Query  121  DGAP  124
            DG+P
Sbjct  120  DGSP  123


>gi|183980964|ref|YP_001849255.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183174290|gb|ACC39400.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1425

 Score =  152 bits (384),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 103/157 (66%), Positives = 118/157 (76%), Gaps = 0/157 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF   +P+ML AAA DLA IG+AI T + AAAA+TT +L A ADEVSAA+A+LF  HA 
Sbjct  1    MSFTVVEPQMLTAAAADLAKIGAAIDTVSTAAAASTTNLLPAAADEVSAAIASLFGTHAL  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQA+  QAA FH   VQ L+  A  YA+ E ANVEQ LLG INAPT AL GRPLIG+GA
Sbjct  61   AYQAIGAQAATFHDGFVQALSRAASRYAATEVANVEQNLLGLINAPTQALFGRPLIGNGA  120

Query  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGA  157
            DGA GTGQ G AGG+L+GNGG GGSGA GQ+GG GGA
Sbjct  121  DGAAGTGQTGQAGGLLWGNGGAGGSGAPGQSGGTGGA  157


>gi|339631132|ref|YP_004722774.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|339330488|emb|CCC26153.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=772

 Score =  143 bits (361),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 85/122 (70%), Positives = 99/122 (82%), Gaps = 0/122 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS++ A P+ML +AA DLASIGS+I+ +  AAAAATTR+L A ADEVSA +AALFSGH +
Sbjct  7    MSYMIAVPDMLSSAAGDLASIGSSINASTRAAAAATTRLLPAAADEVSAHIAALFSGHGE  66

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQA+  Q AAFH Q    LTS+AGAYASAEA NVEQQ+LG INAPT ALLGRPLIG+GA
Sbjct  67   GYQAIARQMAAFHDQFTLALTSSAGAYASAEATNVEQQVLGLINAPTQALLGRPLIGNGA  126

Query  121  DG  122
            DG
Sbjct  127  DG  128


>gi|121636997|ref|YP_977220.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|121492644|emb|CAL71113.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|341601013|emb|CCC63685.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=730

 Score =  141 bits (356),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 84/122 (69%), Positives = 98/122 (81%), Gaps = 0/122 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS++ A P+ML +AA DLASIGS+I+ +  AAAAATTR+L A ADEVSA +AALFSGH +
Sbjct  1    MSYMIAVPDMLSSAAGDLASIGSSINASTRAAAAATTRLLPAAADEVSAHIAALFSGHGE  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQA+  Q AAFH Q    LTS+AGAYASAEA NVEQQ+LG INAPT AL GRPLIG+GA
Sbjct  61   GYQAIARQMAAFHDQFTLALTSSAGAYASAEATNVEQQVLGLINAPTQALWGRPLIGNGA  120

Query  121  DG  122
            DG
Sbjct  121  DG  122


>gi|31792259|ref|NP_854752.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|31617847|emb|CAD93957.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=763

 Score =  141 bits (356),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 84/122 (69%), Positives = 98/122 (81%), Gaps = 0/122 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS++ A P+ML +AA DLASIGS+I+ +  AAAAATTR+L A ADEVSA +AALFSGH +
Sbjct  1    MSYMIAVPDMLSSAAGDLASIGSSINASTRAAAAATTRLLPAAADEVSAHIAALFSGHGE  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQA+  Q AAFH Q    LTS+AGAYASAEA NVEQQ+LG INAPT AL GRPLIG+GA
Sbjct  61   GYQAIARQMAAFHDQFTLALTSSAGAYASAEATNVEQQVLGLINAPTQALWGRPLIGNGA  120

Query  121  DG  122
            DG
Sbjct  121  DG  122


>gi|339294426|gb|AEJ46537.1| putative PE family protein [Mycobacterium tuberculosis CCDC5079]
Length=1330

 Score =  138 bits (348),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 88/122 (73%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA+D+A IGS+I  AN+AAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  2    MSLVIVTPETVAAAASDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  61

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  62   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  121

Query  115  LI  116
            LI
Sbjct  122  LI  123


>gi|339631519|ref|YP_004723161.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|339330875|emb|CCC26546.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=805

 Score =  137 bits (346),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 88/122 (73%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA+D+A IGS+I  AN+AAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  1    MSLVIVTPETVAAAASDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120

Query  115  LI  116
            LI
Sbjct  121  LI  122


>gi|183982116|ref|YP_001850407.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183175442|gb|ACC40552.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1386

 Score =  137 bits (345),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 72/122 (60%), Positives = 86/122 (71%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+   PEM+  AA+DL  +GS IS AN AAA +TT +LAAGADEVSA +AALF  HA 
Sbjct  1    MSFVGVAPEMVAVAASDLERLGSTISAANVAAAGSTTTILAAGADEVSAVIAALFGTHAL  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAA------NVEQQLLGAINAPTMALLGRP  114
             YQA+ TQ + FH+Q VQTLT+  GAY++AE        NVEQ LL  +NAPT AL GRP
Sbjct  61   EYQAISTQLSVFHEQFVQTLTNGVGAYSAAELVNVLPLQNVEQDLLNLVNAPTQALFGRP  120

Query  115  LI  116
            LI
Sbjct  121  LI  122


>gi|339294428|gb|AEJ46539.1| hypothetical protein CCDC5079_1349 [Mycobacterium tuberculosis 
CCDC5079]
Length=742

 Score =  137 bits (345),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 88/122 (73%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA+D+A IGS+I  AN+AAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  2    MSLVIVTPETVAAAASDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  61

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  62   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  121

Query  115  LI  116
            LI
Sbjct  122  LI  123


>gi|57116866|ref|YP_177813.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|148661244|ref|YP_001282767.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|7441232|pir||G70917 hypothetical glycine-rich protein Rv1452c - Mycobacterium tuberculosis 
(strain H37RV)
 gi|38490272|emb|CAE55391.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148505396|gb|ABQ73205.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=741

 Score =  137 bits (344),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 88/122 (73%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA+D+A IGS+I  AN+AAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  1    MSLVIVTPETVAAAASDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120

Query  115  LI  116
            LI
Sbjct  121  LI  122


>gi|121637380|ref|YP_977603.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989855|ref|YP_002644542.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121493027|emb|CAL71498.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224772968|dbj|BAH25774.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341601399|emb|CCC64072.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=1399

 Score =  137 bits (344),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 87/122 (72%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA D+A IGS+I  AN+AAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  1    MSLVIVAPETVAAAALDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120

Query  115  LI  116
            LI
Sbjct  121  LI  122


>gi|339631517|ref|YP_004723159.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|339330873|emb|CCC26544.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=1389

 Score =  136 bits (343),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 87/122 (72%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA D+A IGS+I  AN+AAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  1    MSLVIVAPETVAAAALDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120

Query  115  LI  116
            LI
Sbjct  121  LI  122


>gi|339298066|gb|AEJ50176.1| hypothetical protein CCDC5180_1339 [Mycobacterium tuberculosis 
CCDC5180]
Length=742

 Score =  136 bits (343),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 88/122 (73%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA+D+A IGS+I  AN+AAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  2    MSLVIVTPETVAAAASDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  61

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  62   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  121

Query  115  LI  116
            LI
Sbjct  122  LI  123


>gi|31792644|ref|NP_855137.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|31618234|emb|CAD96152.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=1408

 Score =  136 bits (343),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 87/122 (72%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA D+A IGS+I  AN+AAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  1    MSLVIVAPETVAAAALDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120

Query  115  LI  116
            LI
Sbjct  121  LI  122


>gi|339298064|gb|AEJ50174.1| putative PE family protein [Mycobacterium tuberculosis CCDC5180]
Length=1330

 Score =  136 bits (343),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 70/122 (58%), Positives = 88/122 (73%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA+D+A IGS+I  AN+AAA +TT VLAAGAD+VSAA+A LF  HA+
Sbjct  2    MSLVIVTPETVAAAASDVARIGSSIGVANSAAAGSTTSVLAAGADDVSAAIATLFGSHAR  61

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  62   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  121

Query  115  LI  116
            LI
Sbjct  122  LI  123


>gi|183981229|ref|YP_001849520.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183174555|gb|ACC39665.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=946

 Score =  136 bits (342),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 75/123 (61%), Positives = 89/123 (73%), Gaps = 2/123 (1%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            M+F+   PEM+ AAA+DLA+IGSAI+TAN A AA T  +LAAG DEVS A+A+LFSGHA 
Sbjct  1    MAFVLVAPEMVTAAASDLANIGSAINTANTAVAAPTAELLAAGTDEVSEAIASLFSGHAL  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAE--AANVEQQLLGAINAPTMALLGRPLIGH  118
             YQ+L  +  AFH Q V  LT+  G Y+SAE  AA   Q LL  +NAPT ALLGRPLIG 
Sbjct  61   DYQSLGARMTAFHDQFVAALTAGGGLYSSAEAAAATPLQDLLNVVNAPTQALLGRPLIGD  120

Query  119  GAD  121
            GAD
Sbjct  121  GAD  123


>gi|148660347|ref|YP_001281870.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|148504499|gb|ABQ72308.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=1306

 Score =  136 bits (342),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/124 (64%), Positives = 90/124 (73%), Gaps = 1/124 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML  AATDLA IGS   TA   AAAA  +VL A ADEVS AVAALF  HAQ
Sbjct  1    MSFVIATPEMLTTAATDLAKIGST-ITAANTAAAAVAKVLPASADEVSVAVAALFGTHAQ  59

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQ +  Q A FH + VQTL++ A +Y +AEA NVEQ LL A+NAPT AL GRPLIG+GA
Sbjct  60   EYQTVSAQVATFHDRFVQTLSAAASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGNGA  119

Query  121  DGAP  124
            DG+P
Sbjct  120  DGSP  123


>gi|31791760|ref|NP_854253.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|31617347|emb|CAD93455.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=1306

 Score =  136 bits (342),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/124 (64%), Positives = 90/124 (73%), Gaps = 1/124 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML  AATDLA IGS   TA   AAAA  +VL A ADEVS AVAALF  HAQ
Sbjct  1    MSFVIATPEMLTTAATDLAKIGST-ITAANTAAAAVAKVLPASADEVSVAVAALFGTHAQ  59

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQ +  Q A FH + VQTL++ A +Y +AEA NVEQ LL A+NAPT AL GRPLIG+GA
Sbjct  60   EYQTVSAQVATFHDRFVQTLSAAASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGNGA  119

Query  121  DGAP  124
            DG+P
Sbjct  120  DGSP  123


>gi|57116755|ref|YP_177739.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|148821780|ref|YP_001286533.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|224988968|ref|YP_002643655.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 7 more sequence titles
 Length=1306

 Score =  136 bits (342),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/124 (64%), Positives = 90/124 (73%), Gaps = 1/124 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML  AATDLA IGS   TA   AAAA  +VL A ADEVS AVAALF  HAQ
Sbjct  1    MSFVIATPEMLTTAATDLAKIGST-ITAANTAAAAVAKVLPASADEVSVAVAALFGTHAQ  59

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQ +  Q A FH + VQTL++ A +Y +AEA NVEQ LL A+NAPT AL GRPLIG+GA
Sbjct  60   EYQTVSAQVATFHDRFVQTLSAAASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGNGA  119

Query  121  DGAP  124
            DG+P
Sbjct  120  DGSP  123


>gi|121636496|ref|YP_976719.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|121492143|emb|CAL70608.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
Length=1303

 Score =  136 bits (342),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/124 (64%), Positives = 90/124 (73%), Gaps = 1/124 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML  AATDLA IGS   TA   AAAA  +VL A ADEVS AVAALF  HAQ
Sbjct  1    MSFVIATPEMLTTAATDLAKIGST-ITAANTAAAAVAKVLPASADEVSVAVAALFGTHAQ  59

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQ +  Q A FH + VQTL++ A +Y +AEA NVEQ LL A+NAPT AL GRPLIG+GA
Sbjct  60   EYQTVSAQVATFHDRFVQTLSAAASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGNGA  119

Query  121  DGAP  124
            DG+P
Sbjct  120  DGSP  123


>gi|15839979|ref|NP_335016.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|13880121|gb|AAK44830.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
Length=1306

 Score =  136 bits (342),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/124 (64%), Positives = 90/124 (73%), Gaps = 1/124 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML  AATDLA IGS   TA   AAAA  +VL A ADEVS AVAALF  HAQ
Sbjct  1    MSFVIATPEMLTTAATDLAKIGST-ITAANTAAAAVAKVLPASADEVSVAVAALFGTHAQ  59

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQ +  Q A FH + VQTL++ A +Y +AEA NVEQ LL A+NAPT AL GRPLIG+GA
Sbjct  60   EYQTVSAQVATFHDRFVQTLSAAASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGNGA  119

Query  121  DGAP  124
            DG+P
Sbjct  120  DGSP  123


>gi|183981230|ref|YP_001849521.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183174556|gb|ACC39666.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=963

 Score =  136 bits (342),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 75/123 (61%), Positives = 89/123 (73%), Gaps = 2/123 (1%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            M+F+   PEM+ AAA+DLA+IGSAI+TAN A AA T  +LAAG DEVS A+A+LFSGHA 
Sbjct  1    MAFVLVAPEMVTAAASDLANIGSAINTANTAVAAPTAELLAAGTDEVSEAIASLFSGHAL  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAE--AANVEQQLLGAINAPTMALLGRPLIGH  118
             YQ+L  +  AFH Q V  LT+  G Y+SAE  AA   Q LL  +NAPT ALLGRPLIG 
Sbjct  61   DYQSLGARMTAFHDQFVAALTAGGGLYSSAEAAAATPLQDLLNVVNAPTQALLGRPLIGD  120

Query  119  GAD  121
            GAD
Sbjct  121  GAD  123


>gi|224989857|ref|YP_002644544.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|224772970|dbj|BAH25776.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341601401|emb|CCC64074.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=740

 Score =  136 bits (342),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 87/122 (72%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA D+A IGS+I  AN+AAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  1    MSLVIVAPETVAAAALDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120

Query  115  LI  116
            LI
Sbjct  121  LI  122


>gi|254549533|ref|ZP_05139980.1| PE-PGRS family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=734

 Score =  135 bits (341),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 79/124 (64%), Positives = 90/124 (73%), Gaps = 1/124 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML  AATDLA IGS   TA   AAAA  +VL A ADEVS AVAALF  HAQ
Sbjct  1    MSFVIATPEMLTTAATDLAKIGST-ITAANTAAAAVAKVLPASADEVSVAVAALFGTHAQ  59

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQ +  Q A FH + VQTL++ A +Y +AEA NVEQ LL A+NAPT AL GRPLIG+GA
Sbjct  60   EYQTVSAQVATFHDRFVQTLSAAASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGNGA  119

Query  121  DGAP  124
            DG+P
Sbjct  120  DGSP  123


>gi|183985289|ref|YP_001853580.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178615|gb|ACC43725.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=723

 Score =  135 bits (341),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 88/164 (54%), Positives = 101/164 (62%), Gaps = 27/164 (16%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS+L   PE+L +AATDL  I SA+STAN AAA  TT VLAAGADEVSAAVA+LF+G+ Q
Sbjct  1    MSYLLVTPELLTSAATDLEGIASALSTANLAAAVPTTGVLAAGADEVSAAVASLFAGYGQ  60

Query  61   TYQALRTQAAAFHQQIVQTL--------------TSTAGAYASAEAANVEQQLLGAINAP  106
             YQ++  QA AF  Q +Q +              TS   A+        E  +LG INAP
Sbjct  61   AYQSISLQANAFQAQFIQAINGAGGAYAAAEAASTSPLQAF--------EDTVLGVINAP  112

Query  107  TMALLGRPLIGHGADGAPGT--GQAGGAGGILYGNGGNGGSGAT  148
            T  LLGRPLIG   DGA GT     GGAGG LYGNGGNG S  T
Sbjct  113  TQTLLGRPLIG---DGAAGTAANPNGGAGGFLYGNGGNGFSQTT  153


>gi|340627504|ref|YP_004745956.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340005694|emb|CCC44860.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=1660

 Score =  135 bits (339),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/124 (63%), Positives = 89/124 (72%), Gaps = 2/124 (1%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS++ A PEM+  AA DLA IGS +S A+A AA  TT V+AAGADEVSA +AALFS HAQ
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN--VEQQLLGAINAPTMALLGRPLIGH  118
             YQAL  QAAAFH Q V TLT+ A  Y + E AN    + +LGA+NAPT  LLGRPLIG 
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRAVLGAVNAPTQTLLGRPLIGD  120

Query  119  GADG  122
            GA G
Sbjct  121  GAHG  124


>gi|344220317|gb|AEN00948.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=1644

 Score =  134 bits (338),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 77/124 (63%), Positives = 89/124 (72%), Gaps = 2/124 (1%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS++ A PEM+  AA DLA IGS +S A+A AA  TT V+AAGADEVSA +AALFS HAQ
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN--VEQQLLGAINAPTMALLGRPLIGH  118
             YQAL  QAAAFH Q V TLT+ A  Y + E AN    + +LGA+NAPT  LLGRPLIG 
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRPLIGD  120

Query  119  GADG  122
            GA G
Sbjct  121  GAHG  124


>gi|183981460|ref|YP_001849751.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183174786|gb|ACC39896.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1483

 Score =  134 bits (337),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 75/121 (62%), Positives = 89/121 (74%), Gaps = 0/121 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+   PEM+ AA  DLA IGS+IS ANAAA A TT V+ A ADEVSAA+AALF  HA+
Sbjct  1    MSFVNVAPEMVAAAVEDLAGIGSSISAANAAAVALTTDVVPAAADEVSAAIAALFGSHAR  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQA+  Q+AAFH+++VQTL S A AY   E AN +Q LL A+N PT A LGRPLIG+G 
Sbjct  61   EYQAISAQSAAFHERLVQTLRSGASAYLGTELANAQQNLLNAVNGPTQAWLGRPLIGNGT  120

Query  121  D  121
            D
Sbjct  121  D  121


>gi|340626466|ref|YP_004744918.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004656|emb|CCC43800.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=1006

 Score =  134 bits (336),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 70/122 (58%), Positives = 87/122 (72%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE++ AAA+D+A IGS    AN+ AA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  1    MSLVIVTPELVAAAASDVARIGSGFGAANSTAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH + VQTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  61   EYQAISTQVAAFHDRFVQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120

Query  115  LI  116
            LI
Sbjct  121  LI  122


>gi|340626079|ref|YP_004744531.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004269|emb|CCC43410.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=767

 Score =  129 bits (325),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 114/186 (62%), Positives = 134/186 (73%), Gaps = 0/186 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS++ A P+ML +AA DLASIGS+I+ +  AAAAATTR+L A ADEVSA +AALFSGH +
Sbjct  1    MSYMIAVPDMLSSAAGDLASIGSSINASTRAAAAATTRLLPAAADEVSAHIAALFSGHGE  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQA+  Q AAFH Q    LTS+AGAYASAEA NVEQQ+LG INAPT ALLGRPL+G+GA
Sbjct  61   GYQAIARQMAAFHDQFTLALTSSAGAYASAEATNVEQQVLGLINAPTQALLGRPLVGNGA  120

Query  121  DGAPGTGQAGGAGGILYGNGGNGGSGATGQAGGAGGAAGLIGHGGAGGLGGTGASGGAGG  180
            DG       G  G +    G        G  GG GG+AGLIG+GG GG GG GA+GGAGG
Sbjct  121  DGTAANPNGGAGGLLYGNGGNGFSQTTAGLTGGTGGSAGLIGNGGNGGAGGAGANGGAGG  180

Query  181  AGGWLW  186
             GGWL+
Sbjct  181  NGGWLY  186


>gi|183982067|ref|YP_001850358.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183175393|gb|ACC40503.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=737

 Score =  129 bits (325),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 118/206 (58%), Positives = 131/206 (64%), Gaps = 25/206 (12%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS++ A PEML  AATDLA IG+A+ +AN AAAA  T VLAAGAD++SAAVAALFSGHA 
Sbjct  1    MSYVIAAPEMLAGAATDLAGIGAALQSANGAAAAPITGVLAAGADDISAAVAALFSGHAL  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASA------EAANVEQQLLGAINAPTMALLGRP  114
             YQAL TQ A FHQQ V  L S   +YA+A          VEQQLLG INAPT ALLGRP
Sbjct  61   DYQALSTQMAGFHQQFVTALNSAGASYAAAEAASANPLQAVEQQLLGVINAPTQALLGRP  120

Query  115  LIGHGADGAPGTGQAGGAGGILYG-------------NGGNGGSGATGQAGGAGGAAGLI  161
            LIG G  GAPG  Q GG GG+L+G              GG+GGS      GGAGGA    
Sbjct  121  LIGDGTAGAPG--QNGGDGGLLWGNGGAGGVGTAAHPTGGSGGSAGLIGTGGAGGAGY--  176

Query  162  GHGGAGGLGGTGASGGAGGAGGWLWG  187
              G A   G TG SGG GG GGWL+G
Sbjct  177  --GPAAQTGATGGSGGVGGTGGWLYG  200


 Score = 43.5 bits (101),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 32/53 (61%), Positives = 37/53 (70%), Gaps = 5/53 (9%)

Query  88   ASAEAANVEQQ---LLGAINAPTMALLGRPLIGHGADGAPGTGQAGGAGGILY  137
            +SA AA +      +LGAINAPT ALLGRPLIG GA GA   GQ GG GG+L+
Sbjct  399  SSASAAPLYAVEQQVLGAINAPTQALLGRPLIGDGATGA--AGQNGGDGGLLW  449


>gi|339631131|ref|YP_004722773.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|339330487|emb|CCC26152.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=672

 Score =  128 bits (321),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 98/145 (68%), Positives = 107/145 (74%), Gaps = 1/145 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+   P  L AAA D+A IGSAIS ANAAA A T+ + AAGADEVSAAVAALFS HA 
Sbjct  1    MSFVLVSPSQLMAAAADVAGIGSAISAANAAALAPTSVLAAAGADEVSAAVAALFSAHAG  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQ L  +AA FH+Q VQ LT  A AYASAEA NVEQQ+LG INAPT AL GRPLIG+GA
Sbjct  61   QYQQLGARAALFHEQFVQALTGAASAYASAEATNVEQQVLGLINAPTQALWGRPLIGNGA  120

Query  121  DGAPGTGQAGGAGGILYGNGGNGGS  145
            DG       GGAGG+LY NGGNG S
Sbjct  121  DGT-AANPNGGAGGLLYSNGGNGFS  144


>gi|148663252|ref|YP_001284775.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|148507404|gb|ABQ75213.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=582

 Score =  127 bits (320),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 81/122 (67%), Positives = 89/122 (73%), Gaps = 0/122 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML AAATDLA I SAIS A AAAAA T +V AAGADEVS A++ALF  HAQ
Sbjct  1    MSFVIANPEMLAAAATDLAGIRSAISAATAAAAAPTIQVAAAGADEVSLAISALFGQHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQAL  QA  FH Q VQ LTS    YA+AE+  VEQ +L AINAPT  L GRPLIG GA
Sbjct  61   AYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGDGA  120

Query  121  DG  122
            +G
Sbjct  121  NG  122


>gi|341603337|emb|CCC66018.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=750

 Score =  127 bits (319),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 81/122 (67%), Positives = 89/122 (73%), Gaps = 0/122 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML AAATDLA I SAIS A AAAAA T +V AAGADEVS A++ALF  HAQ
Sbjct  1    MSFVIANPEMLAAAATDLAGIRSAISAATAAAAAPTIQVAAAGADEVSLAISALFGQHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQAL  QA  FH Q VQ LTS    YA+AE+  VEQ +L AINAPT  L GRPLIG GA
Sbjct  61   AYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGDGA  120

Query  121  DG  122
            +G
Sbjct  121  NG  122


>gi|121639312|ref|YP_979536.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224991809|ref|YP_002646498.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121494960|emb|CAL73446.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224774924|dbj|BAH27730.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
Length=750

 Score =  127 bits (319),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 81/122 (67%), Positives = 89/122 (73%), Gaps = 0/122 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML AAATDLA I SAIS A AAAAA T +V AAGADEVS A++ALF  HAQ
Sbjct  1    MSFVIANPEMLAAAATDLAGIRSAISAATAAAAAPTIQVAAAGADEVSLAISALFGQHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQAL  QA  FH Q VQ LTS    YA+AE+  VEQ +L AINAPT  L GRPLIG GA
Sbjct  61   AYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGDGA  120

Query  121  DG  122
            +G
Sbjct  121  NG  122


>gi|31794568|ref|NP_857061.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|31620165|emb|CAD95608.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=749

 Score =  127 bits (319),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 81/122 (67%), Positives = 89/122 (73%), Gaps = 0/122 (0%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MSF+ A PEML AAATDLA I SAIS A AAAAA T +V AAGADEVS A++ALF  HAQ
Sbjct  1    MSFVIANPEMLAAAATDLAGIRSAISAATAAAAAPTIQVAAAGADEVSLAISALFGQHAQ  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAANVEQQLLGAINAPTMALLGRPLIGHGA  120
             YQAL  QA  FH Q VQ LTS    YA+AE+  VEQ +L AINAPT  L GRPLIG GA
Sbjct  61   AYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGDGA  120

Query  121  DG  122
            +G
Sbjct  121  NG  122


>gi|183982655|ref|YP_001850946.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183175981|gb|ACC41091.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=625

 Score =  127 bits (318),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 78/111 (71%), Positives = 86/111 (78%), Gaps = 2/111 (1%)

Query  16   TDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQTYQALRTQAAAFHQQ  75
            TDLAS+GS+IS ANAAAAA T  VLAAGADEVSA VAALF  HAQ YQ+L  QAA FH+Q
Sbjct  16   TDLASVGSSISAANAAAAAPTMSVLAAGADEVSAVVAALFDAHAQAYQSLSAQAALFHEQ  75

Query  76   IVQTLTSTAGAYASAEAANVE--QQLLGAINAPTMALLGRPLIGHGADGAP  124
             VQ L + AG+YA AEAA+V   Q  L  INAPT AL GRPLIG+GADGAP
Sbjct  76   FVQALNAGAGSYALAEAASVSPLQDALNLINAPTQALFGRPLIGNGADGAP  126


>gi|253799501|ref|YP_003032502.1| hypothetical protein TBMG_02531 [Mycobacterium tuberculosis KZN 
1435]
 gi|253321004|gb|ACT25607.1| predicted protein [Mycobacterium tuberculosis KZN 1435]
 gi|328459249|gb|AEB04672.1| hypothetical protein TBSG_02543 [Mycobacterium tuberculosis KZN 
4207]
Length=1408

 Score =  127 bits (318),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 72/122 (60%), Positives = 88/122 (73%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA+D+A IGS+I  ANAAAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  2    MSLVIVTPETVAAAASDVARIGSSIGAANAAAAGSTTSVLAAGADEVSAAIATLFGSHAR  61

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  62   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  121

Query  115  LI  116
            LI
Sbjct  122  LI  123


>gi|57116865|ref|YP_177812.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|7441217|pir||E70917 hypothetical glycine-rich protein Rv1450c - Mycobacterium tuberculosis 
(strain H37RV)
 gi|38490271|emb|CAE55390.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
Length=1329

 Score =  126 bits (316),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 72/122 (60%), Positives = 87/122 (72%), Gaps = 6/122 (4%)

Query  1    MSFLFAQPEMLGAAATDLASIGSAISTANAAAAAATTRVLAAGADEVSAAVAALFSGHAQ  60
            MS +   PE + AAA D+A IGS+I  ANAAAA +TT VLAAGADEVSAA+A LF  HA+
Sbjct  1    MSLVIVAPETVAAAALDVARIGSSIGAANAAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   TYQALRTQAAAFHQQIVQTLTSTAGAYASAEAAN------VEQQLLGAINAPTMALLGRP  114
             YQA+ TQ AAFH +  QTL++  G+Y SAEA N      +E  +L A+NAPT ALLGRP
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120

Query  115  LI  116
            LI
Sbjct  121  LI  122



Lambda     K      H
   0.307    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 1297990237818


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40