BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1397c
Length=133
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608535|ref|NP_215913.1| hypothetical protein Rv1397c [Mycob... 267 3e-70
gi|167968437|ref|ZP_02550714.1| hypothetical protein MtubH3_1053... 267 3e-70
gi|31792591|ref|NP_855084.1| hypothetical protein Mb1432c [Mycob... 265 2e-69
gi|340626411|ref|YP_004744863.1| hypothetical protein MCAN_14131... 260 4e-68
gi|254550411|ref|ZP_05140858.1| toxin [Mycobacterium tuberculosi... 253 9e-66
gi|296165043|ref|ZP_06847598.1| PIN family toxin-antitoxin syste... 200 5e-50
gi|336120129|ref|YP_004574907.1| hypothetical protein MLP_44900 ... 165 2e-39
gi|94263719|ref|ZP_01287527.1| PilT protein-like [delta proteoba... 89.7 1e-16
gi|301062220|ref|ZP_07202897.1| toxin-antitoxin system, toxin co... 83.2 1e-14
gi|15609685|ref|NP_217064.1| hypothetical protein Rv2548 [Mycoba... 83.2 1e-14
gi|292490330|ref|YP_003525769.1| PilT protein domain protein [Ni... 80.5 7e-14
gi|254173743|ref|ZP_04880415.1| putative PIN domain protein [The... 80.1 1e-13
gi|315230803|ref|YP_004071239.1| nucleic acid-binding protein [T... 78.6 3e-13
gi|87123524|ref|ZP_01079375.1| PIN domain protein [Synechococcus... 73.9 8e-12
gi|149200535|ref|ZP_01877546.1| PIN domain protein [Lentisphaera... 73.6 9e-12
gi|57640269|ref|YP_182747.1| nucleic acid-binding protein [Therm... 73.6 1e-11
gi|158522354|ref|YP_001530224.1| PilT domain-containing protein ... 72.4 2e-11
gi|149200682|ref|ZP_01877675.1| PIN domain protein [Lentisphaera... 71.2 5e-11
gi|325295486|ref|YP_004282000.1| PilT protein domain protein [De... 69.3 2e-10
gi|147676746|ref|YP_001210961.1| nucleic acid-binding protein [P... 68.9 2e-10
gi|333977596|ref|YP_004515541.1| PilT protein domain-containing ... 68.6 3e-10
gi|308274945|emb|CBX31544.1| hypothetical protein N47_E50560 [un... 67.8 5e-10
gi|333977519|ref|YP_004515464.1| PilT protein domain-containing ... 67.8 5e-10
gi|94263869|ref|ZP_01287674.1| PilT protein-like [delta proteoba... 67.4 8e-10
gi|161831233|ref|YP_001597087.1| PilT domain-containing protein ... 65.9 2e-09
gi|165921452|ref|ZP_02219640.1| PIN domain protein [Coxiella bur... 65.9 2e-09
gi|209364044|ref|YP_001424674.2| PIN domain protein [Coxiella bu... 65.9 2e-09
gi|225873269|ref|YP_002754728.1| PIN domain protein [Acidobacter... 65.5 2e-09
gi|153873976|ref|ZP_02002370.1| PIN domain protein [Beggiatoa sp... 65.1 4e-09
gi|163785735|ref|ZP_02180247.1| PIN domain protein [Hydrogenivir... 64.7 4e-09
gi|158523145|ref|YP_001531015.1| PilT domain-containing protein ... 63.9 8e-09
gi|312889611|ref|ZP_07749161.1| PilT protein domain protein [Muc... 63.9 8e-09
gi|239905095|ref|YP_002951834.1| hypothetical protein DMR_04570 ... 62.0 3e-08
gi|83590369|ref|YP_430378.1| PilT protein-like [Moorella thermoa... 61.2 5e-08
gi|255039498|ref|YP_003090119.1| PilT protein domain-containing ... 60.5 7e-08
gi|333980746|ref|YP_004518691.1| PilT protein domain-containing ... 58.9 2e-07
gi|255038166|ref|YP_003088787.1| PilT protein domain-containing ... 58.5 3e-07
gi|345303231|ref|YP_004825133.1| PilT protein domain-containing ... 57.4 8e-07
gi|300088644|ref|YP_003759166.1| PilT protein domain-containing ... 57.0 9e-07
gi|159026779|emb|CAO89066.1| unnamed protein product [Microcysti... 55.5 3e-06
gi|87123068|ref|ZP_01078919.1| hypothetical protein RS9917_04395... 55.1 3e-06
gi|313682675|ref|YP_004060413.1| pilt protein domain-containing ... 54.7 4e-06
gi|91204386|emb|CAJ70886.1| conserved hypothetical protein [Cand... 54.7 5e-06
gi|332664437|ref|YP_004447225.1| PilT protein domain-containing ... 54.3 6e-06
gi|308275068|emb|CBX31667.1| hypothetical protein N47_E51790 [un... 54.3 6e-06
gi|153874291|ref|ZP_02002567.1| PIN domain protein [Beggiatoa sp... 54.3 7e-06
gi|78188634|ref|YP_378972.1| nucleic acid binding protein [Chlor... 53.9 8e-06
gi|329901979|ref|ZP_08272991.1| PIN domain protein [Oxalobactera... 53.5 1e-05
gi|189911792|ref|YP_001963347.1| VapC-like nucleic acid-binding ... 53.5 1e-05
gi|258515705|ref|YP_003191927.1| PilT protein domain-containing ... 53.1 1e-05
>gi|15608535|ref|NP_215913.1| hypothetical protein Rv1397c [Mycobacterium tuberculosis H37Rv]
gi|15840855|ref|NP_335892.1| hypothetical protein MT1441 [Mycobacterium tuberculosis CDC1551]
gi|148661188|ref|YP_001282711.1| hypothetical protein MRA_1406 [Mycobacterium tuberculosis H37Ra]
56 more sequence titles
Length=133
Score = 267 bits (683), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 60
MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS
Sbjct 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 60
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL
Sbjct 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
Query 121 KPPFAVPGHRPRA 133
KPPFAVPGHRPRA
Sbjct 121 KPPFAVPGHRPRA 133
>gi|167968437|ref|ZP_02550714.1| hypothetical protein MtubH3_10531 [Mycobacterium tuberculosis
H37Ra]
Length=138
Score = 267 bits (683), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 60
MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS
Sbjct 6 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 65
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL
Sbjct 66 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 125
Query 121 KPPFAVPGHRPRA 133
KPPFAVPGHRPRA
Sbjct 126 KPPFAVPGHRPRA 138
>gi|31792591|ref|NP_855084.1| hypothetical protein Mb1432c [Mycobacterium bovis AF2122/97]
gi|121637327|ref|YP_977550.1| hypothetical protein BCG_1458c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989802|ref|YP_002644489.1| hypothetical protein JTY_1433 [Mycobacterium bovis BCG str. Tokyo
172]
18 more sequence titles
Length=133
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/133 (99%), Positives = 132/133 (99%), Gaps = 0/133 (0%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 60
MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS
Sbjct 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 60
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQ LQLATLNVWHFPMFEQL
Sbjct 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQGLQLATLNVWHFPMFEQL 120
Query 121 KPPFAVPGHRPRA 133
KPPFAVPGHRPRA
Sbjct 121 KPPFAVPGHRPRA 133
>gi|340626411|ref|YP_004744863.1| hypothetical protein MCAN_14131 [Mycobacterium canettii CIPT
140010059]
gi|340004601|emb|CCC43745.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133
Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 131/133 (99%), Positives = 131/133 (99%), Gaps = 0/133 (0%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 60
MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS
Sbjct 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 60
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQ LQLATLNV HFPMFEQL
Sbjct 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQGLQLATLNVRHFPMFEQL 120
Query 121 KPPFAVPGHRPRA 133
KPPFAVPGHRPRA
Sbjct 121 KPPFAVPGHRPRA 133
>gi|254550411|ref|ZP_05140858.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=126
Score = 253 bits (645), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 125/126 (99%), Positives = 126/126 (100%), Gaps = 0/126 (0%)
Query 8 VLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASFRVQPAT 67
+LIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASFRVQPAT
Sbjct 1 MLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASFRVQPAT 60
Query 68 EVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLKPPFAVP 127
EVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLKPPFAVP
Sbjct 61 EVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLKPPFAVP 120
Query 128 GHRPRA 133
GHRPRA
Sbjct 121 GHRPRA 126
>gi|296165043|ref|ZP_06847598.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899691|gb|EFG79142.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=131
Score = 200 bits (509), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 97/126 (77%), Positives = 112/126 (89%), Gaps = 0/126 (0%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 60
+ILVDSD+LIAHLRG+ AAR WLV AR++GPLAISVVS AEL+GGMR+AERREVWRLLAS
Sbjct 6 VILVDSDILIAHLRGLDAARHWLVQARQEGPLAISVVSIAELVGGMRSAERREVWRLLAS 65
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
FR +PATE+IARRAGD RRYR SH+ IGLGDYL+AATADV+ Q ATLNV HFPMF+ L
Sbjct 66 FRTEPATEIIARRAGDFRRRYRASHSSIGLGDYLLAATADVKGYQAATLNVKHFPMFKNL 125
Query 121 KPPFAV 126
+PPFA+
Sbjct 126 RPPFAL 131
>gi|336120129|ref|YP_004574907.1| hypothetical protein MLP_44900 [Microlunatus phosphovorus NM-1]
gi|334687919|dbj|BAK37504.1| hypothetical protein MLP_44900 [Microlunatus phosphovorus NM-1]
Length=126
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/126 (67%), Positives = 95/126 (76%), Gaps = 0/126 (0%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLAS 60
MILVD+DVLIAHL GV AAR WL SAR PL +SVV+ AELIGGMR++ERREVW LLAS
Sbjct 1 MILVDTDVLIAHLGGVEAARRWLRSARDLAPLHVSVVTIAELIGGMRSSERREVWTLLAS 60
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
+P TEVIARRAG+ R Y R H+ IG+ DYLIAATAD L TLNV HFPMF L
Sbjct 61 LHAEPVTEVIARRAGEFRRNYARGHSGIGIADYLIAATADYHGADLQTLNVRHFPMFPDL 120
Query 121 KPPFAV 126
+PPF +
Sbjct 121 EPPFTL 126
>gi|94263719|ref|ZP_01287527.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93455918|gb|EAT06077.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=128
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/124 (46%), Positives = 77/124 (63%), Gaps = 4/124 (3%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTA-ERREVWRLLASF 61
L+D+DV++ LRG AA LV D + S+V AEL G+R+A E + RL+A F
Sbjct 6 LLDTDVMVDFLRGQSAAVS-LVKTHADRIILSSIV-IAELYAGVRSADELATLDRLVALF 63
Query 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLK 121
R P T AR AG +RY +SH +GL D +IAATA+ + L TLN+ H+PMF+ LK
Sbjct 64 RNVPVTAENARTAGLYKKRYTKSHG-VGLADCIIAATAENEQADLLTLNIKHYPMFKGLK 122
Query 122 PPFA 125
PP+A
Sbjct 123 PPYA 126
>gi|301062220|ref|ZP_07202897.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
gi|300443652|gb|EFK07740.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
Length=127
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/124 (41%), Positives = 74/124 (60%), Gaps = 4/124 (3%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMR-TAERREVWRLLAS 60
IL D+DVL+ RG A D+ V+ D + +S + AEL G++ AE+ + R ++
Sbjct 5 ILPDTDVLVDFFRGFPRAVDF-VNEYND-RIILSSIVVAELYAGVKGEAEQIALQRFISL 62
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
FRV P I + G R Y +SH +GL D ++AATA+V++ +L TLN H+PMFE L
Sbjct 63 FRVVPIDATIGKAGGLYRRDYGKSHG-VGLADAILAATAEVENAELRTLNTRHYPMFENL 121
Query 121 KPPF 124
KP +
Sbjct 122 KPAY 125
>gi|15609685|ref|NP_217064.1| hypothetical protein Rv2548 [Mycobacterium tuberculosis H37Rv]
gi|15842084|ref|NP_337121.1| hypothetical protein MT2624 [Mycobacterium tuberculosis CDC1551]
gi|31793731|ref|NP_856224.1| hypothetical protein Mb2578 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=125
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/125 (43%), Positives = 69/125 (56%), Gaps = 1/125 (0%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGP-LAISVVSTAELIGGMRTAERREVWRLLA 59
M L+D+ + + HLRG AA L +G +A S + EL+ G+R +E + +
Sbjct 1 MKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFS 60
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
+ TE IAR G + RRYR SH I DYLIAATA V D L T NV HFPMF
Sbjct 61 AVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPD 120
Query 120 LKPPF 124
L+PP+
Sbjct 121 LQPPY 125
>gi|292490330|ref|YP_003525769.1| PilT protein domain protein [Nitrosococcus halophilus Nc4]
gi|291578925|gb|ADE13382.1| PilT protein domain protein [Nitrosococcus halophilus Nc4]
Length=129
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/124 (40%), Positives = 70/124 (57%), Gaps = 4/124 (3%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTA-ERREVWRLLAS 60
+L+D+DVLI +LRGV A +L + L ISV++ EL G+R ER + L +
Sbjct 5 LLLDTDVLIDYLRGVPVAVSYLEGCAE--VLLISVITVTELFAGVREGRERTTLSAFLGA 62
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
F V P IA + G R Y +SH GL D IAATA++ ++ TLN HFPM +++
Sbjct 63 FEVVPLDRPIAEKGGLYRRDYGKSHG-TGLADAFIAATAELCQAKVVTLNRKHFPMLKEV 121
Query 121 KPPF 124
P+
Sbjct 122 LVPY 125
>gi|254173743|ref|ZP_04880415.1| putative PIN domain protein [Thermococcus sp. AM4]
gi|214032435|gb|EEB73265.1| putative PIN domain protein [Thermococcus sp. AM4]
Length=125
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/130 (42%), Positives = 74/130 (57%), Gaps = 12/130 (9%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAE---RREVWRL 57
M LVD+DVLI LRGV A+ +L +G LA+SV++ AEL G T + R +V +L
Sbjct 1 MYLVDTDVLIDVLRGVNEAKQYLTELAGEG-LAVSVITVAELFSGRDTKDPIKREKVLKL 59
Query 58 LASFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMF 117
L F V P IA AG++ R Y + LGD +I+ATA + L + T N+ HF
Sbjct 60 LRHFEVIPVDNEIAVLAGEVRRDY-----GLHLGDAIISATAIIHGLTVVTGNLKHFGKV 114
Query 118 EQL---KPPF 124
E+L KPP+
Sbjct 115 EELPVIKPPY 124
>gi|315230803|ref|YP_004071239.1| nucleic acid-binding protein [Thermococcus barophilus MP]
gi|315183831|gb|ADT84016.1| nucleic acid-binding protein [Thermococcus barophilus MP]
Length=125
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/124 (41%), Positives = 70/124 (57%), Gaps = 9/124 (7%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRT---AERREVWRL 57
M LVD+D++I LRGV ++++L+ K+G L +SV+S AE+ G T + ++ R
Sbjct 1 MHLVDTDIIIDILRGVKGSKEFLLDLSKEG-LFLSVISMAEIFSGKETRDPVKHEKILRF 59
Query 58 LASFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMF 117
L+ F V P T+ IA G + R Y+ IGL D LIAATA L + T N HF
Sbjct 60 LSHFEVVPLTQEIAILGGAIRRDYQ-----IGLADALIAATAIHNGLTIVTYNTKHFEKV 114
Query 118 EQLK 121
E LK
Sbjct 115 EGLK 118
>gi|87123524|ref|ZP_01079375.1| PIN domain protein [Synechococcus sp. RS9917]
gi|86169244|gb|EAQ70500.1| PIN domain protein [Synechococcus sp. RS9917]
Length=130
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/128 (43%), Positives = 71/128 (56%), Gaps = 4/128 (3%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAE-RREVWRLLA 59
+++VD+DVLI +LR A +L + D LA SV++ AEL G+R E R+ + +
Sbjct 4 LLVVDTDVLIDYLRDQPQAVAFLEGS--DQVLAASVITVAELYAGVRDGEERKRLDAFVE 61
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
+F V P + A AG R+Y RSH GL D LIAATAD L TLN HFPM
Sbjct 62 AFDVIPLNDKAAVVAGLWRRQYGRSHG-TGLADALIAATADGVGGTLVTLNQRHFPMLPD 120
Query 120 LKPPFAVP 127
L P+ P
Sbjct 121 LLIPYRKP 128
>gi|149200535|ref|ZP_01877546.1| PIN domain protein [Lentisphaera araneosa HTCC2155]
gi|149136384|gb|EDM24826.1| PIN domain protein [Lentisphaera araneosa HTCC2155]
Length=126
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/117 (36%), Positives = 67/117 (58%), Gaps = 4/117 (3%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMR-TAERREVWRLLASF 61
LVD+ ++I LRG A++++ + ++ + ISVV+ AEL G++ +E ++ L F
Sbjct 7 LVDTCIIIDFLRGKEGAKEFISNELEN--ICISVVTVAELYAGVKGKSEETQLGSFLGLF 64
Query 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFE 118
+ + I+ +G + +Y +SHN GL D +IAATA D L T N HFPM E
Sbjct 65 SMIELNKDISISSGYLKNKYYKSHNA-GLADCMIAATALEYDFNLVTNNFKHFPMVE 120
>gi|57640269|ref|YP_182747.1| nucleic acid-binding protein [Thermococcus kodakarensis KOD1]
gi|57158593|dbj|BAD84523.1| predicted nucleic acid-binding protein, containing PIN domain
[Thermococcus kodakarensis KOD1]
Length=129
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/133 (40%), Positives = 73/133 (55%), Gaps = 11/133 (8%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRT---AERREVWRL 57
M L+D+DV+I LR V +R++++ K+G IS V+ AEL G T +R ++ R
Sbjct 1 MYLIDTDVIIDVLRKVEGSREFILELVKEGAF-ISTVTIAELFSGRDTRDPIKREKLLRF 59
Query 58 LASFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMF 117
L+ F T IA AG++ R Y S LGD +IAATA V L +AT NV HF
Sbjct 60 LSHFEALSVTTEIAVLAGELRRDYGLS-----LGDAIIAATATVYGLTVATGNVKHFGRI 114
Query 118 EQLKPPFAVPGHR 130
+ L P VP +R
Sbjct 115 KDL--PVLVPPYR 125
>gi|158522354|ref|YP_001530224.1| PilT domain-containing protein [Desulfococcus oleovorans Hxd3]
gi|158511180|gb|ABW68147.1| PilT protein domain protein [Desulfococcus oleovorans Hxd3]
Length=133
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/124 (35%), Positives = 70/124 (57%), Gaps = 4/124 (3%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMR-TAERREVWRLLAS 60
+LVD+DVL+ RG A ++ + + +S + AEL G++ AE+ + +
Sbjct 11 VLVDTDVLVDFFRGHEKAGAFVNTHH--ARIILSPIVIAELYAGVKGEAEQAALKDFFSL 68
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
F V P + I + G R Y +SH +GL D ++AATA +++ +L TLN H+PMF+ L
Sbjct 69 FPVVPISAEIGKAGGLYRRDYGKSHG-VGLADAILAATAKIENAELKTLNTRHYPMFKGL 127
Query 121 KPPF 124
KP +
Sbjct 128 KPAY 131
>gi|149200682|ref|ZP_01877675.1| PIN domain protein [Lentisphaera araneosa HTCC2155]
gi|149136226|gb|EDM24686.1| PIN domain protein [Lentisphaera araneosa HTCC2155]
Length=127
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/117 (36%), Positives = 66/117 (57%), Gaps = 4/117 (3%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMR-TAERREVWRLLASF 61
LVD+ ++I LRG ++++ + ++ ++ISVV+ AEL G++ E ++ L F
Sbjct 7 LVDTCIIIDFLRGKEGGKEFISNELEN--ISISVVTVAELYAGVKGKNEETQLASFLGLF 64
Query 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFE 118
+ + I+ +G + +Y +SHN GL D +IAATA D L T N HFPM E
Sbjct 65 SIIELNKDISISSGYLKNKYYKSHNA-GLADCMIAATALEYDFNLVTNNFKHFPMVE 120
>gi|325295486|ref|YP_004282000.1| PilT protein domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065934|gb|ADY73941.1| PilT protein domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
Length=134
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/128 (35%), Positives = 66/128 (52%), Gaps = 5/128 (3%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKD--GPLAISVVSTAELIGGMRTAERREVWRLL 58
MI++D+DVLI LR ++ A +D G L I+ + E+ GMR E + LL
Sbjct 1 MIVLDTDVLIWILRKNREVKEQFEKAVEDTAGQLYITTIQITEIFAGMREKEEQRTRELL 60
Query 59 ASFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMF- 117
+ + IA AGD +R+YR+SH+ + L D IAA ++L T N H+PM
Sbjct 61 EALSLITIDREIAELAGDFIRKYRKSHS-VELADATIAAATRKTGMKLWTYNRKHYPMLN 119
Query 118 -EQLKPPF 124
++ P F
Sbjct 120 EDEFYPKF 127
>gi|147676746|ref|YP_001210961.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
gi|146272843|dbj|BAF58592.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
Length=145
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/130 (38%), Positives = 70/130 (54%), Gaps = 7/130 (5%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPL-AISVVSTAELIGGM---RTAERREVWRL 57
+L+D+ VL+ HLR A ++L +A G + AIS V+ EL G A +V +
Sbjct 4 LLLDTSVLVDHLREYKPATEFLETAFNSGAVVAISAVTEMELYAGKSMENPAIEEDVLKF 63
Query 58 LASFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMF 117
L F+ P T IAR+AG M+RRYR H + D +IA+TA + L T N+ HF M
Sbjct 64 LKLFKTLPVTSNIARQAGLMLRRYR--HQGLTPIDAIIASTAMEHNANLITRNIKHFRMV 121
Query 118 EQLKPPFAVP 127
+ + F VP
Sbjct 122 KGI-IVFGVP 130
>gi|333977596|ref|YP_004515541.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821077|gb|AEG13740.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=129
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/128 (36%), Positives = 59/128 (47%), Gaps = 5/128 (3%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASF 61
L+D+ +LI LRG A D L + GPLA V+ AE+ G R E ++ +
Sbjct 6 FLLDTTILIDFLRGRKEAIDMLNRLVEAGPLACCPVTVAEVFSGARPEELPKIEEFFEAL 65
Query 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLK 121
P ARRAG R Y + + + D +IAA A L L T NV HFPM
Sbjct 66 LFYPVGYKTARRAGLYRREYGKKGITLSISDTIIAAVAVENSLTLVTKNVRHFPM----- 120
Query 122 PPFAVPGH 129
P AV H
Sbjct 121 PELAVIEH 128
>gi|308274945|emb|CBX31544.1| hypothetical protein N47_E50560 [uncultured Desulfobacterium
sp.]
Length=127
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/115 (36%), Positives = 61/115 (54%), Gaps = 2/115 (1%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASF 61
+++D+DVLI HLRG ++ L + L S ++ E+ GM+ ER + LL S
Sbjct 4 VVIDTDVLILHLRGNKQIKEMLKEVAQSSLLCCSAITIGEIYAGMKDEEREKTELLLDSL 63
Query 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPM 116
V IA AG +R +SH+ + L D LIAAT ++ L T N+ H+PM
Sbjct 64 PVFEVDRKIAELAG-FYKRSIKSHH-LELDDCLIAATCVLKKAVLITGNIKHYPM 116
>gi|333977519|ref|YP_004515464.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821000|gb|AEG13663.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=134
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/123 (37%), Positives = 68/123 (56%), Gaps = 3/123 (2%)
Query 3 LVDSDVLIAHLRGVVA--ARDWLVSARKDGPLAISVVSTAELIGGMRTAERRE-VWRLLA 59
L+D+ VLI HL G ++ A WL G A SV+ EL+ G RT + R V +LL
Sbjct 4 LIDTCVLIDHLTGRLSPDAGAWLEQVVASGSAATSVIVYHELLYGARTEKARAAVEKLLE 63
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
++ + P +A RA ++ R +G+ D LIAATA++++L++ T NV FP E
Sbjct 64 AWEILPVDRRVAGRAAEIRRDQAAKGRTLGMADCLIAATAELRNLKVVTSNVKDFPTVET 123
Query 120 LKP 122
+ P
Sbjct 124 VLP 126
>gi|94263869|ref|ZP_01287674.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|94265358|ref|ZP_01289113.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93454168|gb|EAT04495.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93455790|gb|EAT05961.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=128
Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/124 (36%), Positives = 66/124 (54%), Gaps = 4/124 (3%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRT-AERREVWRLLAS 60
+L+D+++LI +LR A +L + D ++IS ++ AEL G R E++++ +
Sbjct 4 VLLDTNILIDYLRDHPQAVKYLETGSGD--MSISALTVAELHAGARNDLEKQKLREFTTA 61
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
F V PA I G +Y SH I L D LIAAT+ V + L TLN HFPM +
Sbjct 62 FEVIPADSAICEMGGGFRAKYAPSHG-IDLIDGLIAATSVVCKVPLVTLNKKHFPMLGNV 120
Query 121 KPPF 124
P+
Sbjct 121 VIPY 124
>gi|161831233|ref|YP_001597087.1| PilT domain-containing protein [Coxiella burnetii RSA 331]
gi|161763100|gb|ABX78742.1| PIN domain protein [Coxiella burnetii RSA 331]
Length=128
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (34%), Positives = 62/125 (50%), Gaps = 2/125 (1%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVW-RLLA 59
++L+D+D++I LRG +A ++ IS ++ AEL G R E V R L
Sbjct 2 LLLLDTDIIIDFLRGQESAVKFIEKTAAKVVCHISTLTIAELYVGARDGEEYGVLERFLQ 61
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
F + IA+ G R Y +SH GL D +IAAT +L TLN H+PM +
Sbjct 62 IFTAIEVSPQIAQLGGLFRRDYGKSHGT-GLADAIIAATTQCISAKLVTLNKKHYPMLKN 120
Query 120 LKPPF 124
+ P+
Sbjct 121 IHVPY 125
>gi|165921452|ref|ZP_02219640.1| PIN domain protein [Coxiella burnetii RSA 334]
gi|165916767|gb|EDR35371.1| PIN domain protein [Coxiella burnetii RSA 334]
Length=128
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (34%), Positives = 62/125 (50%), Gaps = 2/125 (1%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVW-RLLA 59
++L+D+D++I LRG +A ++ IS ++ AEL G R E V R L
Sbjct 2 LLLLDTDIIIDFLRGEESAVKFIEKTAAKVVCHISTLTIAELYVGARDGEEYGVLERFLQ 61
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
F + IA+ G R Y +SH GL D +IAAT +L TLN H+PM +
Sbjct 62 IFTAIEVSPQIAQLGGLFRRDYGKSHGT-GLADAIIAATTQCISAKLVTLNKKHYPMLKN 120
Query 120 LKPPF 124
+ P+
Sbjct 121 IHVPY 125
>gi|209364044|ref|YP_001424674.2| PIN domain protein [Coxiella burnetii Dugway 5J108-111]
gi|212212378|ref|YP_002303314.1| PIN domain protein [Coxiella burnetii CbuG_Q212]
gi|215919145|ref|NP_820232.2| twitching motility protein PilT [Coxiella burnetii RSA 493]
gi|206584029|gb|AAO90746.2| PIN domain protein [Coxiella burnetii RSA 493]
gi|207081977|gb|ABS77259.2| PIN domain protein [Coxiella burnetii Dugway 5J108-111]
gi|212010788|gb|ACJ18169.1| PIN domain protein [Coxiella burnetii CbuG_Q212]
Length=130
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (34%), Positives = 62/125 (50%), Gaps = 2/125 (1%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVW-RLLA 59
++L+D+D++I LRG +A ++ IS ++ AEL G R E V R L
Sbjct 4 LLLLDTDIIIDFLRGQESAVKFIEKTAAKVVCHISTLTIAELYVGARDGEEYGVLERFLQ 63
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
F + IA+ G R Y +SH GL D +IAAT +L TLN H+PM +
Sbjct 64 IFTAIEVSPQIAQLGGLFRRDYGKSHGT-GLADAIIAATTQCISAKLVTLNKKHYPMLKN 122
Query 120 LKPPF 124
+ P+
Sbjct 123 IHVPY 127
>gi|225873269|ref|YP_002754728.1| PIN domain protein [Acidobacterium capsulatum ATCC 51196]
gi|225792522|gb|ACO32612.1| PIN domain protein [Acidobacterium capsulatum ATCC 51196]
Length=124
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/117 (37%), Positives = 61/117 (53%), Gaps = 3/117 (2%)
Query 2 ILVDSDVLIAHLRG--VVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLA 59
+LVDSD+LI RG W+ +R + + V+ AEL G R E+ + RL
Sbjct 3 VLVDSDILIEVSRGRDTAIVERWMALSRSVEAVLYTPVTAAELWAGARPGEQELLTRLFQ 62
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPM 116
+ P E R AG +R++ +SH+ + LGD LIAA A Q+ L T N H+PM
Sbjct 63 AIDCAPLDEETGRMAGAFLRQFHKSHS-VELGDALIAAAAVQQEAMLWTRNRKHYPM 118
>gi|153873976|ref|ZP_02002370.1| PIN domain protein [Beggiatoa sp. PS]
gi|152069563|gb|EDN67633.1| PIN domain protein [Beggiatoa sp. PS]
Length=130
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/126 (36%), Positives = 69/126 (55%), Gaps = 5/126 (3%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDG-PLAISVVSTAELIGGMRTA-ERREVWRLLAS 60
L+D+ +LI RG A D++ AR PL ISV+S EL+ G R E ++ +++A
Sbjct 6 LLDTTILINLFRGHEKAADFIEKARTSKIPLFISVISAMELVAGCRNQIEVKKTQKIVAD 65
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
F + + +A ++M Y +SH + + D LIAATA + ++LAT N HF M L
Sbjct 66 FTLIHLSPDATAKAYELMLEYTKSHG-LTIPDALIAATALTKGIELATDNERHFLMISDL 124
Query 121 --KPPF 124
K P+
Sbjct 125 IVKRPY 130
>gi|163785735|ref|ZP_02180247.1| PIN domain protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159878996|gb|EDP72988.1| PIN domain protein [Hydrogenivirga sp. 128-5-R1-1]
Length=122
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/122 (31%), Positives = 69/122 (57%), Gaps = 3/122 (2%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAEL-IGGMRTAERREVWRLLA 59
MI++D++++I L+G ++ L + ++ AIS++++ EL G + E ++ + L
Sbjct 1 MIILDTNIIIELLKGNTETKELLKNINEEN-FAISIITSMELYYGAINKRELNKIKKFLK 59
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
SF + E I++ A D++ +Y +SH + + D LIAAT+ D+ L T N F E
Sbjct 60 SFNLLVINEEISKIALDLIEKYSKSHG-LEIPDALIAATSIYYDVPLLTYNKKDFKYIET 118
Query 120 LK 121
L+
Sbjct 119 LQ 120
>gi|158523145|ref|YP_001531015.1| PilT domain-containing protein [Desulfococcus oleovorans Hxd3]
gi|158511971|gb|ABW68938.1| PilT protein domain protein [Desulfococcus oleovorans Hxd3]
Length=129
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/116 (35%), Positives = 62/116 (54%), Gaps = 3/116 (2%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDGPLAI--SVVSTAELIGGMRTAERREVWRLLAS 60
+DSDVLI HLRG A + + R L + V+ AE+I MR E + L+
Sbjct 4 FIDSDVLIWHLRGERKALNLIRKLRDKEQLDLWTGVMQRAEVIFFMRPNEEEDTLLFLSQ 63
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPM 116
F+ P + I +AG++ R++ H I + D ++AAT + ++ TLNV H+PM
Sbjct 64 FQTAPVDQKIIDKAGELYRKWNPRHG-IDINDAILAATTMQTNGRIYTLNVKHYPM 118
>gi|312889611|ref|ZP_07749161.1| PilT protein domain protein [Mucilaginibacter paludis DSM 18603]
gi|311297959|gb|EFQ75078.1| PilT protein domain protein [Mucilaginibacter paludis DSM 18603]
Length=124
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/121 (32%), Positives = 59/121 (49%), Gaps = 1/121 (0%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERR-EVWRLLAS 60
+++D+ + I HLR L D P +SVV+ EL G T E++ ++ +
Sbjct 1 MVIDTCIFIDHLRSKDRTNTTLAKLPTDEPAYVSVVTLFELYCGANTPEKKLDIAAVTED 60
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
+ P +A +AGD+ R +R + IG D +IAAT V D + T N HF + L
Sbjct 61 LNILPFDATVAEKAGDIFRALKRQNKGIGPQDTMIAATCLVFDQPILTRNKDHFKRVDNL 120
Query 121 K 121
K
Sbjct 121 K 121
>gi|239905095|ref|YP_002951834.1| hypothetical protein DMR_04570 [Desulfovibrio magneticus RS-1]
gi|239794959|dbj|BAH73948.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length=133
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/126 (38%), Positives = 66/126 (53%), Gaps = 3/126 (2%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWR-LLA 59
++L D+DVLI + RG A L +A +DG A+SV+ EL+ G R + + +A
Sbjct 9 VVLFDTDVLIDYGRGDPHAAAVLDAAHQDGISAVSVIVHCELLAGCRDKREQGILDAFMA 68
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
FR I+ A ++RRYR SH + L D LIAATA D L T N + E
Sbjct 69 GFRCVHIDANISGGALGLLRRYRLSHG-LRLPDALIAATALAHDWPLVTKNQKDYRFIEG 127
Query 120 LK-PPF 124
L+ PP+
Sbjct 128 LQLPPY 133
>gi|83590369|ref|YP_430378.1| PilT protein-like [Moorella thermoacetica ATCC 39073]
gi|83573283|gb|ABC19835.1| PilT protein-like protein [Moorella thermoacetica ATCC 39073]
Length=129
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/121 (37%), Positives = 57/121 (48%), Gaps = 1/121 (0%)
Query 3 LVDSDVLIAHLRGVVAARDWLVS-ARKDGPLAISVVSTAELIGGMRTAERREVWRLLASF 61
L+D+ V I RG A DWL+S A + G LA S V AE G+ +R + L +F
Sbjct 7 LLDTTVFIDVSRGNKAVIDWLISWADEPGVLATSTVVVAEYFSGLPIDKRNQAKDYLLAF 66
Query 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLK 121
V P T A RAG++ Y R + L D L A A + L + T N HFP
Sbjct 67 NVLPVTFEDAVRAGEIRWDYARKGITLALADALHGAIAVRRGLTVVTSNPAHFPFVSTFN 126
Query 122 P 122
P
Sbjct 127 P 127
>gi|255039498|ref|YP_003090119.1| PilT protein domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254952254|gb|ACT96954.1| PilT protein domain protein [Dyadobacter fermentans DSM 18053]
Length=126
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/127 (38%), Positives = 70/127 (56%), Gaps = 3/127 (2%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGG-MRTAERREVWRLLA 59
M+L+D+++LI +LRG AA +++ SA K A++ V EL G + AE ++ RLL
Sbjct 1 MLLLDTNILIDYLRGKQAAIEFIDSANKR-RFAVNTVVVLELYNGCLNRAELTKIRRLLN 59
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
F E IA+ A + Y SH+ + D LIAATA V +L+L T N+ F M
Sbjct 60 GFMHFELNEAIAQAATRIGHSYALSHS-VSAPDALIAATALVYNLELRTANLKDFRMIPG 118
Query 120 LKPPFAV 126
LK A+
Sbjct 119 LKLSNAL 125
>gi|333980746|ref|YP_004518691.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333824227|gb|AEG16890.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=133
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/126 (39%), Positives = 65/126 (52%), Gaps = 12/126 (9%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDG-PLAISVVSTAELIGGM----RTAERREVWR 56
+++D+ VLI HLR A ++L + G P IS V+ EL G RTAE V +
Sbjct 4 LMLDTSVLIDHLRNYKPATEFLETVFGSGIPAIISAVTEMELYAGKSLQNRTAED-AVQK 62
Query 57 LLASFRVQPATEVIARRAGDMMRRYRRSHNRIGLG--DYLIAATADVQDLQLATLNVWHF 114
LL P T IAR+AG ++R+YR GL D +IA+TA Q L T N HF
Sbjct 63 LLELLDAVPVTSGIARQAGILLRQYRPK----GLTPVDAIIASTAMEQKATLITRNTRHF 118
Query 115 PMFEQL 120
M + L
Sbjct 119 RMIDGL 124
>gi|255038166|ref|YP_003088787.1| PilT protein domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254950922|gb|ACT95622.1| PilT protein domain protein [Dyadobacter fermentans DSM 18053]
Length=128
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (30%), Positives = 61/121 (51%), Gaps = 1/121 (0%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELI-GGMRTAERREVWRLLAS 60
+++D+ + I +LR ++ L S D L +S V+ EL+ G ++++V LL
Sbjct 6 LVIDTGIFIEYLRKPEKSKTILASLPNDASLFVSAVTVYELMMGATNDQKKKDVQTLLDG 65
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQL 120
+ P E ++ +A ++ RR + I D IAATA + L + TLN HF E L
Sbjct 66 ISILPFDEEVSLKAAEIYHNLRRRNLMIEFRDIFIAATAIIFQLPIKTLNKDHFQRIETL 125
Query 121 K 121
+
Sbjct 126 E 126
>gi|345303231|ref|YP_004825133.1| PilT protein domain-containing protein [Rhodothermus marinus
SG0.5JP17-172]
gi|345112464|gb|AEN73296.1| PilT protein domain protein [Rhodothermus marinus SG0.5JP17-172]
Length=129
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/122 (34%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRT-AERREVWRLLA 59
MIL+DSDV+I LRG A W + ++ +A+ ELI G R+ E+R++ R L
Sbjct 1 MILLDSDVMIDLLRGYPPAVSWFETLDEEEEIALPGFVAMELIQGCRSKKEQRQLQRSLI 60
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
F V RA ++ +Y SH +G+ D LIA TA ++ L T H+
Sbjct 61 PFGVVWPLPEDCDRALELFMQYHLSHG-VGMLDVLIAQTALALEVPLYTFKQKHYQFLSA 119
Query 120 LK 121
L+
Sbjct 120 LQ 121
>gi|300088644|ref|YP_003759166.1| PilT protein domain-containing protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299528377|gb|ADJ26845.1| PilT protein domain protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length=136
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/119 (36%), Positives = 59/119 (50%), Gaps = 1/119 (0%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASFR 62
+VD+D+ I LR AR L +G LA+S ++ E+ GM+ E L
Sbjct 12 IVDTDIAIDFLRKRQYARQLLNRWADEGLLAVSALTHLEIYQGMKPGEEVNTDAFLDGLI 71
Query 63 VQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLK 121
P +AR+AG M+ R IG+ D +IAATA + + L T NV H+P F LK
Sbjct 72 SLPVDIPVARQAGAMLGVLRSKGITIGMADAIIAATALLLGVPLLTNNVDHYP-FSGLK 129
>gi|159026779|emb|CAO89066.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length=129
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/118 (33%), Positives = 61/118 (52%), Gaps = 12/118 (10%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELI-GGMRTAERREVWRLLASF 61
+VD+D++I RG+ A + L + LAISVV+ ELI G +E + + + L F
Sbjct 6 IVDTDIIIDVGRGIAEAVNCLQRLQSSSRLAISVVTQMELIVGCTNKSELQTLEKFLQQF 65
Query 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
V + I+ +A D++R YR SH + + D LIA TA +W++P +
Sbjct 66 DVIRIDQPISDKAVDLLRLYRLSHGLL-IADGLIAGTA----------IIWNYPFITK 112
>gi|87123068|ref|ZP_01078919.1| hypothetical protein RS9917_04395 [Synechococcus sp. RS9917]
gi|86168788|gb|EAQ70044.1| hypothetical protein RS9917_04395 [Synechococcus sp. RS9917]
Length=120
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/117 (38%), Positives = 61/117 (53%), Gaps = 12/117 (10%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASF 61
+L+D++VLI L+G ARDWL R+ P A+SV++ E++ G R AE R V L F
Sbjct 3 LLLDTNVLIDVLKGEATARDWL--ERQQQP-AVSVITWIEVLVGCRPAESRAVESWLDCF 59
Query 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLG--DYLIAATADVQDLQLATLNVWHFPM 116
P +AR + +R+ GL D +I ATA L LAT N FP+
Sbjct 60 ERLPLDSDVARESVQARQRH-------GLKAPDAIILATARCHGLTLATRNSRDFPI 109
>gi|313682675|ref|YP_004060413.1| pilt protein domain-containing protein [Sulfuricurvum kujiense
DSM 16994]
gi|313155535|gb|ADR34213.1| PilT protein domain protein [Sulfuricurvum kujiense DSM 16994]
Length=129
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/123 (36%), Positives = 66/123 (54%), Gaps = 7/123 (5%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAER-REVWRLLAS 60
ILVDSDVLI +LRG A+ + S G IS V+ EL+ GMR E R + L
Sbjct 5 ILVDSDVLIWYLRGNENAKKLIHSL---GDFCISGVTHIELVQGMRNKEELRRFQQTLRQ 61
Query 61 FRVQP--ATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFE 118
+ + +E I+ +A + Y SH+ + L D LIA+TA ++L T N H+ + +
Sbjct 62 WNTKTIYMSEEISAKALFYVEEYFLSHS-MELADALIASTATTYGMKLITANDKHYRIVK 120
Query 119 QLK 121
+L+
Sbjct 121 ELE 123
>gi|91204386|emb|CAJ70886.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]
Length=137
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/123 (34%), Positives = 63/123 (52%), Gaps = 6/123 (4%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTA-----ERREVWRL 57
L+D+D +I +L G LV+ RK+G LAISV+S AEL G+ + +++ +
Sbjct 6 LIDTDWIIHYLNGQEEIVKRLVALRKEG-LAISVISLAELYEGVYYSTNPKGDKKALDDF 64
Query 58 LASFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMF 117
L + + I + G + R+ IG D LIAAT +L L T N+ HF +
Sbjct 65 LTGVLILGLEDEICKIFGKERGKLRKLKIVIGDFDLLIAATCLCYNLTLLTNNIKHFKIV 124
Query 118 EQL 120
E+L
Sbjct 125 EKL 127
>gi|332664437|ref|YP_004447225.1| PilT protein domain-containing protein [Haliscomenobacter hydrossis
DSM 1100]
gi|332333251|gb|AEE50352.1| PilT protein domain protein [Haliscomenobacter hydrossis DSM
1100]
Length=128
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/115 (34%), Positives = 58/115 (51%), Gaps = 1/115 (0%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRT-AERREVWRLLAS 60
+LVD+ ++I +LR A+ + KD L +S +S EL+ G + A+R +V +
Sbjct 6 VLVDTSIVIDYLRSHNRAQTNFIKLFKDNRLYLSTISVFELLNGSTSEAKRLDVETVCVE 65
Query 61 FRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFP 115
+ A+ A ++ R R + I D LIAA+A DL LATLN HF
Sbjct 66 INILDFNIDTAKIASEIYRDLRTKNQLIEFRDILIAASALQYDLPLATLNRKHFE 120
>gi|308275068|emb|CBX31667.1| hypothetical protein N47_E51790 [uncultured Desulfobacterium
sp.]
Length=133
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/122 (29%), Positives = 68/122 (56%), Gaps = 6/122 (4%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELI--GGMRTAERREVWRLLA 59
+LVD+D+LI L+ + AR+ S + + S++S EL+ G+ ++E++++ +L+
Sbjct 6 LLVDTDILIDFLKRIKPAREIFFSDSIE--IYCSILSKKELLIKPGLSSSEKKKINDILS 63
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQ 119
+V I + ++ +Y +R + DY+IAATA ++L L T N HF ++
Sbjct 64 KIKVLKIDSDINNKYMMLLEKY--GTHRASMPDYVIAATAWAKNLPLLTRNTRHFKHIKE 121
Query 120 LK 121
+K
Sbjct 122 IK 123
>gi|153874291|ref|ZP_02002567.1| PIN domain protein [Beggiatoa sp. PS]
gi|152069244|gb|EDN67432.1| PIN domain protein [Beggiatoa sp. PS]
Length=127
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/115 (34%), Positives = 59/115 (52%), Gaps = 3/115 (2%)
Query 1 MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAEL-IGGMRTAERREVWRLLA 59
MIL D+D+LI + L S K +AIS ++ AEL G + E ++ R L+
Sbjct 1 MILCDTDILIEFYKNNPQIFQEL-SYIKPQNMAISAITQAELYFGALNKIELEKIKRHLS 59
Query 60 SFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHF 114
P I+++ +M Y SH ++GL D +IAATA V ++L T N+ F
Sbjct 60 GILCIPLDRDISKQFLQLMETYALSH-KLGLPDAIIAATALVHHMELYTRNIKDF 113
>gi|78188634|ref|YP_378972.1| nucleic acid binding protein [Chlorobium chlorochromatii CaD3]
gi|78170833|gb|ABB27929.1| nucleic acid-binding protein, containing PIN domain [Chlorobium
chlorochromatii CaD3]
Length=126
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/114 (34%), Positives = 58/114 (51%), Gaps = 8/114 (7%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIG-GMRTAERREVWRLLASF 61
L+DS+++I HL G +A ++L S IS ++ E++ E+ +V LL F
Sbjct 9 LIDSNIIIYHLNGENSATEFLRSNVSQSY--ISRITFIEVLSFDFMKDEKEDVLNLLRRF 66
Query 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFP 115
+ T+ IA RA + R +I L D +IA+TA V DL L T N+ F
Sbjct 67 EIIDTTDAIAMRAIE-----NRKLKKIKLADNIIASTAQVDDLVLVTKNIKDFN 115
>gi|329901979|ref|ZP_08272991.1| PIN domain protein [Oxalobacteraceae bacterium IMCC9480]
gi|327548908|gb|EGF33531.1| PIN domain protein [Oxalobacteraceae bacterium IMCC9480]
Length=125
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/133 (37%), Positives = 67/133 (51%), Gaps = 15/133 (11%)
Query 2 ILVDSDVLIAHLRG--VVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLA 59
+L+D+DVLI RG AAR L+S P IS V+ EL+ G R +++E+ R+
Sbjct 1 MLIDTDVLIWMTRGHAAAAARLQLIS-----PWRISAVTYIELVQGCR--DKQELKRIKQ 53
Query 60 SFR-----VQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHF 114
+ P T I+ RA D++ Y SHN + LGD LIAATA + T N HF
Sbjct 54 GLAQCDTCIVPVTASISARAMDLVDIYALSHN-MQLGDALIAATALEHGNTVLTANAKHF 112
Query 115 PMFEQLKPPFAVP 127
+ L+ P
Sbjct 113 GPVDGLRIELFTP 125
>gi|189911792|ref|YP_001963347.1| VapC-like nucleic acid-binding protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776468|gb|ABZ94769.1| VapC-like nucleic acid-binding protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
Length=132
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (30%), Positives = 63/124 (51%), Gaps = 6/124 (4%)
Query 3 LVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERRE-----VWRL 57
L+D+D+++ L+G ++ L+ +K+ ISV++ ELI G + ++ RE V+R+
Sbjct 4 LIDTDIILYSLKGNEKVQNNLIE-KKNISKVISVITYGELIFGAKKSKSREKNLATVYRI 62
Query 58 LASFRVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMF 117
F V T+ I G++ ++ N + D LI +TA + L T N HF +
Sbjct 63 GELFPVIELTKGIVETFGEVKATVQKKGNTVDDFDLLIGSTALFLNYTLVTNNEKHFSLI 122
Query 118 EQLK 121
LK
Sbjct 123 PDLK 126
>gi|258515705|ref|YP_003191927.1| PilT protein domain-containing protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257779410|gb|ACV63304.1| PilT protein domain protein [Desulfotomaculum acetoxidans DSM
771]
Length=136
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/127 (36%), Positives = 65/127 (52%), Gaps = 12/127 (9%)
Query 2 ILVDSDVLIAHLRGVVAARDWLVSARKDGPLA--ISVVSTAELIGGMR--TAERR--EVW 55
++VD++++I HLRG+ A L ++G IS V EL+ + +E+R +
Sbjct 3 VVVDTNIIIDHLRGIPQATKQL-QEIENGNFEGLISTVVIMELLAAPKPKISEKRLVAIN 61
Query 56 RLLASFRVQPATEVIARRAGDMMRRYRRSHNRIGLG--DYLIAATADVQDLQLATLNVWH 113
LL F P IA AG+++ +YR SH GL D LI ATA V D L TL+ H
Sbjct 62 NLLQIFEHLPVDGQIATVAGNLLSQYRASH---GLEPMDALIGATALVNDAVLFTLSKKH 118
Query 114 FPMFEQL 120
F + L
Sbjct 119 FKFIKGL 125
Lambda K H
0.326 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130457467840
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40