BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1398c

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608536|ref|NP_215914.1|  hypothetical protein Rv1398c [Mycob...   172    2e-41
gi|15840856|ref|NP_335893.1|  CopG family transcriptional regulat...   172    2e-41
gi|296165042|ref|ZP_06847597.1|  CopG family transcriptional regu...   114    5e-24
gi|254550412|ref|ZP_05140859.1|  CopG family transcriptional regu...   104    5e-21
gi|336120130|ref|YP_004574908.1|  hypothetical protein MLP_44910 ...   100    9e-20
gi|298251651|ref|ZP_06975454.1|  CopG domain protein DNA-binding ...  41.6    0.042
gi|298251603|ref|ZP_06975406.1|  CopG domain protein DNA-binding ...  41.2    0.051
gi|298251821|ref|ZP_06975624.1|  CopG domain protein DNA-binding ...  40.8    0.076
gi|298251701|ref|ZP_06975504.1|  CopG domain protein DNA-binding ...  40.4    0.086
gi|298248398|ref|ZP_06972203.1|  CopG domain protein DNA-binding ...  38.9    0.25 
gi|298248527|ref|ZP_06972332.1|  hypothetical protein Krac_6197 [...  38.9    0.25 
gi|298248394|ref|ZP_06972199.1|  hypothetical protein Krac_6040 [...  37.7    0.58 
gi|297623628|ref|YP_003705062.1|  CopG domain-containing protein ...  37.4    0.78 
gi|302552930|ref|ZP_07305272.1|  predicted protein [Streptomyces ...  37.0    0.98 
gi|339494320|ref|YP_004714613.1|  hypothetical protein PSTAB_2243...  37.0    1.0  
gi|302559526|ref|ZP_07311868.1|  hypothetical protein SSRG_03041 ...  37.0    1.0  
gi|238619794|ref|YP_002914620.1|  hypothetical protein M164_1346 ...  36.6    1.3  
gi|329939282|ref|ZP_08288618.1|  hypothetical protein SGM_4110 [S...  36.6    1.3  
gi|302543814|ref|ZP_07296156.1|  hypothetical protein SSOG_04239 ...  36.6    1.4  
gi|328883431|emb|CCA56670.1|  hypothetical protein SVEN_3384 [Str...  36.2    1.6  
gi|226349302|ref|YP_002776416.1|  hypothetical protein ROP_pROB01...  35.8    2.0  
gi|339782901|gb|AEK08621.1|  gp77 [Mycobacterium phage DLane]         35.8    2.1  
gi|189425379|ref|YP_001952556.1|  CopG family transcriptional reg...  35.8    2.4  
gi|294630479|ref|ZP_06709039.1|  hypothetical protein SSTG_02480 ...  34.7    4.8  
gi|206599979|ref|YP_002241757.1|  gp72 [Mycobacterium phage Fruit...  34.7    5.5  
gi|345102696|gb|AEN70297.1|  hypothetical protein [Mycobacterium ...  34.3    5.9  
gi|226334818|ref|YP_002784490.1|  hypothetical protein ROP_pKNR-0...  34.3    6.2  
gi|15609684|ref|NP_217063.1|  hypothetical protein Rv2547 [Mycoba...  34.3    6.4  
gi|31983864|ref|NP_858472.1|  carnitine racemase [Rhodococcus equ...  34.3    6.9  
gi|333980727|ref|YP_004518672.1|  CopG-like domain-containing pro...  34.3    7.0  
gi|297718638|gb|ADI50253.1|  putative DNA binding ribbon-helix-he...  34.3    7.2  
gi|15842083|ref|NP_337120.1|  CopG family DNA-binding protein [My...  33.9    7.4  
gi|10956634|ref|NP_066770.1|  hypothetical protein p103_17 [Rhodo...  33.9    8.0  
gi|167969003|ref|ZP_02551280.1|  hypothetical protein MtubH3_1363...  33.9    8.4  
gi|323343235|ref|ZP_08083465.1|  HicB family toxin-antitoxin syst...  33.9    8.7  
gi|111026914|ref|YP_708892.1|  hypothetical protein RHA1_ro11087 ...  33.9    9.1  


>gi|15608536|ref|NP_215914.1| hypothetical protein Rv1398c [Mycobacterium tuberculosis H37Rv]
 gi|31792592|ref|NP_855085.1| hypothetical protein Mb1433c [Mycobacterium bovis AF2122/97]
 gi|121637328|ref|YP_977551.1| hypothetical protein BCG_1459c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 73 more sequence titles
 Length=85

 Score =  172 bits (435),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL  60
           MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL
Sbjct  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL  60

Query  61  RHLDPPVRRSGGREQHLAQVWRATS  85
           RHLDPPVRRSGGREQHLAQVWRATS
Sbjct  61  RHLDPPVRRSGGREQHLAQVWRATS  85


>gi|15840856|ref|NP_335893.1| CopG family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|13881055|gb|AAK45707.1| transcriptional regulator, CopG family [Mycobacterium tuberculosis 
CDC1551]
Length=89

 Score =  172 bits (435),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL  60
           MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL
Sbjct  5   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL  64

Query  61  RHLDPPVRRSGGREQHLAQVWRATS  85
           RHLDPPVRRSGGREQHLAQVWRATS
Sbjct  65  RHLDPPVRRSGGREQHLAQVWRATS  89


>gi|296165042|ref|ZP_06847597.1| CopG family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899690|gb|EFG79141.1| CopG family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=89

 Score =  114 bits (285),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 57/85 (68%), Positives = 67/85 (79%), Gaps = 0/85 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL  60
           MKRTNIYLDEEQ A+LDKLA Q+GVSRAELIR LL  AL  + D+L SDL AI +SFG L
Sbjct  5   MKRTNIYLDEEQAANLDKLAEQQGVSRAELIRQLLGTALNNSDDNLESDLNAIEESFGAL  64

Query  61  RHLDPPVRRSGGREQHLAQVWRATS  85
           R ++ P RR GGRE+HL ++WR TS
Sbjct  65  RDVESPDRRPGGREEHLDRMWRRTS  89


>gi|254550412|ref|ZP_05140859.1| CopG family transcriptional regulator [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=61

 Score =  104 bits (259),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 56/60 (94%), Positives = 56/60 (94%), Gaps = 1/60 (1%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL  60
           MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAI    GTL
Sbjct  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAIT-IVGTL  59


>gi|336120130|ref|YP_004574908.1| hypothetical protein MLP_44910 [Microlunatus phosphovorus NM-1]
 gi|334687920|dbj|BAK37505.1| hypothetical protein MLP_44910 [Microlunatus phosphovorus NM-1]
Length=90

 Score =  100 bits (248),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 50/85 (59%), Positives = 63/85 (75%), Gaps = 0/85 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL  60
           M+RTNIYL++ QT +LD+LAA EGVSRAE+IR LL+RAL    D LA DL AI+ SFG L
Sbjct  1   MRRTNIYLEDRQTEALDRLAAGEGVSRAEVIRRLLDRALAGNDDRLAEDLAAIDCSFGVL  60

Query  61  RHLDPPVRRSGGREQHLAQVWRATS  85
              D P R +G RE+HLA++W+  S
Sbjct  61  AEFDVPDREAGAREEHLARIWQVGS  85


>gi|298251651|ref|ZP_06975454.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
 gi|297546243|gb|EFH80111.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
Length=63

 Score = 41.6 bits (96),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           MKRTNIYL+E+Q   L + A +EGV  AEL+R
Sbjct  1   MKRTNIYLNEKQHEKLQEQAEKEGVPVAELVR  32


>gi|298251603|ref|ZP_06975406.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
 gi|297546195|gb|EFH80063.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
Length=70

 Score = 41.2 bits (95),  Expect = 0.051, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           MKRTNIYL+E+Q   L + A +EGV  AEL+R
Sbjct  8   MKRTNIYLNEKQHEKLQEQAEKEGVPVAELVR  39


>gi|298251821|ref|ZP_06975624.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
 gi|297546413|gb|EFH80281.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
Length=63

 Score = 40.8 bits (94),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           MKRTNIYL+E+Q   L + A +EGV  AEL+R
Sbjct  1   MKRTNIYLNEKQHQKLYEQAEKEGVPVAELVR  32


>gi|298251701|ref|ZP_06975504.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
 gi|297546293|gb|EFH80161.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
Length=131

 Score = 40.4 bits (93),  Expect = 0.086, Method: Compositional matrix adjust.
 Identities = 18/32 (57%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           M+RTNIYL+E+Q   L + A +EGV  AEL+R
Sbjct  1   MRRTNIYLNEKQHQKLHEQAEKEGVPVAELVR  32


>gi|298248398|ref|ZP_06972203.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
 gi|297551057|gb|EFH84923.1| CopG domain protein DNA-binding domain protein [Ktedonobacter 
racemifer DSM 44963]
Length=64

 Score = 38.9 bits (89),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 18/32 (57%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           M+RTNIYL+E Q   L + A +EGV  AEL+R
Sbjct  1   MRRTNIYLNERQHEKLHEQAEKEGVPVAELVR  32


>gi|298248527|ref|ZP_06972332.1| hypothetical protein Krac_6197 [Ktedonobacter racemifer DSM 44963]
 gi|297551186|gb|EFH85052.1| hypothetical protein Krac_6197 [Ktedonobacter racemifer DSM 44963]
Length=63

 Score = 38.9 bits (89),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 22/45 (49%), Positives = 30/45 (67%), Gaps = 2/45 (4%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDD  45
           MKRTN+YL E+Q   L + + QEGV+ AEL+R  ++  L  A DD
Sbjct  1   MKRTNLYLTEKQMERLRQRSEQEGVAIAELVRRAVDSFL--AWDD  43


>gi|298248394|ref|ZP_06972199.1| hypothetical protein Krac_6040 [Ktedonobacter racemifer DSM 44963]
 gi|297551053|gb|EFH84919.1| hypothetical protein Krac_6040 [Ktedonobacter racemifer DSM 44963]
Length=63

 Score = 37.7 bits (86),  Expect = 0.58, Method: Compositional matrix adjust.
 Identities = 21/45 (47%), Positives = 30/45 (67%), Gaps = 2/45 (4%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDD  45
           MKRTN+YL E+Q   L + + +EGV+ AEL+R  ++  L  A DD
Sbjct  1   MKRTNLYLTEKQMERLHQRSEKEGVAIAELVRRAVDSFL--AWDD  43


>gi|297623628|ref|YP_003705062.1| CopG domain-containing protein DNA-binding domain-containing 
protein [Truepera radiovictrix DSM 17093]
 gi|297164808|gb|ADI14519.1| CopG domain protein DNA-binding domain protein [Truepera radiovictrix 
DSM 17093]
Length=96

 Score = 37.4 bits (85),  Expect = 0.78, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNR  37
           MKRT +Y+DE+    L  LA Q+G  +AEL+R  L+R
Sbjct  1   MKRTTVYVDEKTDLELAHLARQQGRPKAELVREALSR  37


>gi|302552930|ref|ZP_07305272.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
 gi|302470548|gb|EFL33641.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
Length=103

 Score = 37.0 bits (84),  Expect = 0.98, Method: Compositional matrix adjust.
 Identities = 17/32 (54%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           MKRTN+Y D E  A + + A + GVS AE+IR
Sbjct  18  MKRTNVYADPEDLAIIKEAAKRRGVSEAEIIR  49


>gi|339494320|ref|YP_004714613.1| hypothetical protein PSTAB_2243 [Pseudomonas stutzeri ATCC 17588 
= LMG 11199]
 gi|338801692|gb|AEJ05524.1| hypothetical protein PSTAB_2243 [Pseudomonas stutzeri ATCC 17588 
= LMG 11199]
Length=58

 Score = 37.0 bits (84),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 18/47 (39%), Positives = 30/47 (64%), Gaps = 2/47 (4%)

Query  1   MKRT--NIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDD  45
           M+RT  N++++ E    LD+LA ++GVS A L+   L R L++A  +
Sbjct  1   MRRTRLNLFIEPEHAGRLDELAPKKGVSNASLVAAALARCLSSASTE  47


>gi|302559526|ref|ZP_07311868.1| hypothetical protein SSRG_03041 [Streptomyces griseoflavus Tu4000]
 gi|302477144|gb|EFL40237.1| hypothetical protein SSRG_03041 [Streptomyces griseoflavus Tu4000]
Length=123

 Score = 37.0 bits (84),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           MKRTN+Y D E  A + + A + G+S AE+IR
Sbjct  38  MKRTNVYADPEDLAIIKEAAKRRGISEAEIIR  69


>gi|238619794|ref|YP_002914620.1| hypothetical protein M164_1346 [Sulfolobus islandicus M.16.4]
 gi|238380864|gb|ACR41952.1| hypothetical protein M164_1346 [Sulfolobus islandicus M.16.4]
Length=74

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 16/36 (45%), Positives = 25/36 (70%), Gaps = 0/36 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLN  36
           +K+ ++YLDEE    +D  A + G+S A LIRL+L+
Sbjct  10  LKKISVYLDEETYNRIDTFAKEHGLSTATLIRLILS  45


>gi|329939282|ref|ZP_08288618.1| hypothetical protein SGM_4110 [Streptomyces griseoaurantiacus 
M045]
 gi|329301511|gb|EGG45405.1| hypothetical protein SGM_4110 [Streptomyces griseoaurantiacus 
M045]
Length=88

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           MKRTN+Y D E  A + + A + G+S AE+IR
Sbjct  3   MKRTNVYADPEDLAIIKEAAKRRGISEAEIIR  34


>gi|302543814|ref|ZP_07296156.1| hypothetical protein SSOG_04239 [Streptomyces hygroscopicus ATCC 
53653]
 gi|302461432|gb|EFL24525.1| hypothetical protein SSOG_04239 [Streptomyces himastatinicus 
ATCC 53653]
Length=86

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           MKRTN+Y D E  A + + A + G+S AE+IR
Sbjct  3   MKRTNVYADPEDLAIIKEAAKRRGISEAEIIR  34


>gi|328883431|emb|CCA56670.1| hypothetical protein SVEN_3384 [Streptomyces venezuelae ATCC 
10712]
Length=88

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           MKRTN+Y D E  A + + A + G+S AE+IR
Sbjct  3   MKRTNVYADPEDLAIIKEAAKRRGISEAEIIR  34


>gi|226349302|ref|YP_002776416.1| hypothetical protein ROP_pROB01-00650 [Rhodococcus opacus B4]
 gi|226245217|dbj|BAH55564.1| hypothetical protein [Rhodococcus opacus B4]
Length=288

 Score = 35.8 bits (81),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 19/41 (47%), Positives = 23/41 (57%), Gaps = 0/41 (0%)

Query  3    RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAG  43
            R N++ DE     LD LAA+ G  RAEL+RL   R L   G
Sbjct  212  RANVHFDEPLRDKLDGLAARVGSDRAELMRLAARRVLEEPG  252


>gi|339782901|gb|AEK08621.1| gp77 [Mycobacterium phage DLane]
Length=57

 Score = 35.8 bits (81),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (67%), Gaps = 0/36 (0%)

Query  4   TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL  39
            N+ L +E  A +D+ AA EG++RAE IR LL R L
Sbjct  17  VNVRLGDELLAEVDEYAAAEGIARAEAIRHLLRRGL  52


>gi|189425379|ref|YP_001952556.1| CopG family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189421638|gb|ACD96036.1| CopG domain protein DNA-binding domain protein [Geobacter lovleyi 
SZ]
Length=102

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  3   RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL  39
           RT IY+  + TA L +LA+  GVS+AE++R LL   L
Sbjct  55  RTTIYVGSDTTAVLTELASAHGVSKAEVLRRLLTAYL  91


>gi|294630479|ref|ZP_06709039.1| hypothetical protein SSTG_02480 [Streptomyces sp. e14]
 gi|292833812|gb|EFF92161.1| hypothetical protein SSTG_02480 [Streptomyces sp. e14]
Length=94

 Score = 34.7 bits (78),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 15/32 (47%), Positives = 22/32 (69%), Gaps = 0/32 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR  32
           +KRTN+Y D E  A + + A + G+S AE+IR
Sbjct  9   LKRTNVYADPEDLAIIKEAAKRRGISEAEIIR  40


>gi|206599979|ref|YP_002241757.1| gp72 [Mycobacterium phage Fruitloop]
 gi|206287067|gb|ACI12413.1| gp72 [Mycobacterium phage Fruitloop]
Length=67

 Score = 34.7 bits (78),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 17/36 (48%), Positives = 24/36 (67%), Gaps = 0/36 (0%)

Query  4   TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL  39
            N+ L ++  A +D+ AA EG++RAE IR LL R L
Sbjct  27  VNVRLGDDLLAEVDEYAAAEGIARAEAIRHLLRRGL  62


>gi|345102696|gb|AEN70297.1| hypothetical protein [Mycobacterium phage Jebeks]
Length=57

 Score = 34.3 bits (77),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 17/36 (48%), Positives = 24/36 (67%), Gaps = 0/36 (0%)

Query  4   TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL  39
            N+ L ++  A +D+ AA EG++RAE IR LL R L
Sbjct  17  VNVRLGDDLLAEVDEYAAAEGIARAEAIRHLLRRGL  52


>gi|226334818|ref|YP_002784490.1| hypothetical protein ROP_pKNR-00460 [Rhodococcus opacus B4]
 gi|226246038|dbj|BAH56138.1| hypothetical protein [Rhodococcus opacus B4]
Length=305

 Score = 34.3 bits (77),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 18/41 (44%), Positives = 23/41 (57%), Gaps = 0/41 (0%)

Query  3    RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAG  43
            R N++ D+     LD LAA+ G  RAEL+RL   R L   G
Sbjct  233  RANVHFDDALRDKLDALAARVGSDRAELMRLAAKRVLDEPG  273


>gi|15609684|ref|NP_217063.1| hypothetical protein Rv2547 [Mycobacterium tuberculosis H37Rv]
 gi|31793730|ref|NP_856223.1| hypothetical protein Mb2577 [Mycobacterium bovis AF2122/97]
 gi|121638432|ref|YP_978656.1| hypothetical protein BCG_2570 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 54 more sequence titles
 Length=85

 Score = 34.3 bits (77),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 23/62 (38%), Positives = 33/62 (54%), Gaps = 2/62 (3%)

Query  3   RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTLRH  62
           RT + L +E+   LD+ A   G SR+ELIR  ++RA  T        L A++ S G+ R 
Sbjct  2   RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRGSWRG  59

Query  63  LD  64
            D
Sbjct  60  RD  61


>gi|31983864|ref|NP_858472.1| carnitine racemase [Rhodococcus equi]
 gi|215481760|ref|YP_002332912.1| hypothetical protein pVAPA_0720 [Rhodococcus equi]
 gi|10801072|dbj|BAB16626.1| carnitine racemase [Rhodococcus equi]
 gi|198040916|emb|CAQ30413.1| hypothetical protein pVAPA_0720 [Rhodococcus equi]
Length=140

 Score = 34.3 bits (77),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 15/33 (46%), Positives = 24/33 (73%), Gaps = 0/33 (0%)

Query  5   NIYLDEEQTASLDKLAAQEGVSRAELIRLLLNR  37
           N++LD    A LD LAA+ G +RAE++R+ ++R
Sbjct  58  NMHLDMPTRAELDGLAARHGTTRAEIMRIAVDR  90


>gi|333980727|ref|YP_004518672.1| CopG-like domain-containing protein DNA-binding protein [Desulfotomaculum 
kuznetsovii DSM 6115]
 gi|333824208|gb|AEG16871.1| CopG-like domain-containing protein DNA-binding protein [Desulfotomaculum 
kuznetsovii DSM 6115]
Length=84

 Score = 34.3 bits (77),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 18/44 (41%), Positives = 28/44 (64%), Gaps = 0/44 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGD  44
           M+RT IYL  +Q  +L   A ++G+S AELIR +++  L   G+
Sbjct  1   MQRTQIYLHPDQHRALLNEARRKGISLAELIRQIVSEHLERQGE  44


>gi|297718638|gb|ADI50253.1| putative DNA binding ribbon-helix-helix protein [Rhodococcus 
equi]
Length=140

 Score = 34.3 bits (77),  Expect = 7.2, Method: Compositional matrix adjust.
 Identities = 15/34 (45%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  4   TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNR  37
            N++LD    A LD LAA+ G +RAE++R+ ++R
Sbjct  57  VNMHLDMPTRAELDGLAARHGTTRAEIMRIAVDR  90


>gi|15842083|ref|NP_337120.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|167968844|ref|ZP_02551121.1| DNA-binding protein, CopG family [Mycobacterium tuberculosis 
H37Ra]
 gi|254232668|ref|ZP_04925995.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 19 more sequence titles
 Length=90

 Score = 33.9 bits (76),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 23/62 (38%), Positives = 33/62 (54%), Gaps = 2/62 (3%)

Query  3   RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTLRH  62
           RT + L +E+   LD+ A   G SR+ELIR  ++RA  T        L A++ S G+ R 
Sbjct  7   RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRGSWRG  64

Query  63  LD  64
            D
Sbjct  65  RD  66


>gi|10956634|ref|NP_066770.1| hypothetical protein p103_17 [Rhodococcus equi]
 gi|10657882|gb|AAG21721.1| unknown [Rhodococcus equi]
Length=140

 Score = 33.9 bits (76),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 15/34 (45%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  4   TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNR  37
            N++LD    A LD LAA+ G +RAE++R+ ++R
Sbjct  57  VNMHLDMPTRAELDCLAARHGTTRAEIMRIAVDR  90


>gi|167969003|ref|ZP_02551280.1| hypothetical protein MtubH3_13632 [Mycobacterium tuberculosis 
H37Ra]
Length=71

 Score = 33.9 bits (76),  Expect = 8.4, Method: Compositional matrix adjust.
 Identities = 17/42 (41%), Positives = 26/42 (62%), Gaps = 0/42 (0%)

Query  1   MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTA  42
           M +T +YL +E  AS+ + A Q GVS A++IR  +  A+  A
Sbjct  1   MDKTTVYLPDELKASVKRAARQRGVSEAQVIRESIRAAVGGA  42


>gi|323343235|ref|ZP_08083465.1| HicB family toxin-antitoxin system [Erysipelothrix rhusiopathiae 
ATCC 19414]
 gi|322462963|gb|EFY08159.1| HicB family toxin-antitoxin system [Erysipelothrix rhusiopathiae 
ATCC 19414]
Length=54

 Score = 33.9 bits (76),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 16/38 (43%), Positives = 25/38 (66%), Gaps = 0/38 (0%)

Query  2   KRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL  39
           KR N+ ++EE   SLD +A   G+SR+  I +L+N+ L
Sbjct  4   KRLNVMVEEEIIKSLDAVAEDYGLSRSSYIAMLINKEL  41


>gi|111026914|ref|YP_708892.1| hypothetical protein RHA1_ro11087 [Rhodococcus jostii RHA1]
 gi|110825453|gb|ABH00734.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=455

 Score = 33.9 bits (76),  Expect = 9.1, Method: Compositional matrix adjust.
 Identities = 26/64 (41%), Positives = 35/64 (55%), Gaps = 6/64 (9%)

Query  3    RTNIYLDEEQTASLDKLAAQEGVSR-AELIRLLLNRALTTAGDDLASDLQAINDSFGTLR  61
            RT +YL+      L+KL ++ G +R A  IR+ + R L   GD LA+DL  I    GT R
Sbjct  158  RTRVYLNRSTLVRLEKLISRNGDARTAAAIRVAVRRLLDNPGD-LAADLATI----GTSR  212

Query  62   HLDP  65
             L P
Sbjct  213  DLTP  216



Lambda     K      H
   0.316    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131466506940


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40