BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1398c
Length=85
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608536|ref|NP_215914.1| hypothetical protein Rv1398c [Mycob... 172 2e-41
gi|15840856|ref|NP_335893.1| CopG family transcriptional regulat... 172 2e-41
gi|296165042|ref|ZP_06847597.1| CopG family transcriptional regu... 114 5e-24
gi|254550412|ref|ZP_05140859.1| CopG family transcriptional regu... 104 5e-21
gi|336120130|ref|YP_004574908.1| hypothetical protein MLP_44910 ... 100 9e-20
gi|298251651|ref|ZP_06975454.1| CopG domain protein DNA-binding ... 41.6 0.042
gi|298251603|ref|ZP_06975406.1| CopG domain protein DNA-binding ... 41.2 0.051
gi|298251821|ref|ZP_06975624.1| CopG domain protein DNA-binding ... 40.8 0.076
gi|298251701|ref|ZP_06975504.1| CopG domain protein DNA-binding ... 40.4 0.086
gi|298248398|ref|ZP_06972203.1| CopG domain protein DNA-binding ... 38.9 0.25
gi|298248527|ref|ZP_06972332.1| hypothetical protein Krac_6197 [... 38.9 0.25
gi|298248394|ref|ZP_06972199.1| hypothetical protein Krac_6040 [... 37.7 0.58
gi|297623628|ref|YP_003705062.1| CopG domain-containing protein ... 37.4 0.78
gi|302552930|ref|ZP_07305272.1| predicted protein [Streptomyces ... 37.0 0.98
gi|339494320|ref|YP_004714613.1| hypothetical protein PSTAB_2243... 37.0 1.0
gi|302559526|ref|ZP_07311868.1| hypothetical protein SSRG_03041 ... 37.0 1.0
gi|238619794|ref|YP_002914620.1| hypothetical protein M164_1346 ... 36.6 1.3
gi|329939282|ref|ZP_08288618.1| hypothetical protein SGM_4110 [S... 36.6 1.3
gi|302543814|ref|ZP_07296156.1| hypothetical protein SSOG_04239 ... 36.6 1.4
gi|328883431|emb|CCA56670.1| hypothetical protein SVEN_3384 [Str... 36.2 1.6
gi|226349302|ref|YP_002776416.1| hypothetical protein ROP_pROB01... 35.8 2.0
gi|339782901|gb|AEK08621.1| gp77 [Mycobacterium phage DLane] 35.8 2.1
gi|189425379|ref|YP_001952556.1| CopG family transcriptional reg... 35.8 2.4
gi|294630479|ref|ZP_06709039.1| hypothetical protein SSTG_02480 ... 34.7 4.8
gi|206599979|ref|YP_002241757.1| gp72 [Mycobacterium phage Fruit... 34.7 5.5
gi|345102696|gb|AEN70297.1| hypothetical protein [Mycobacterium ... 34.3 5.9
gi|226334818|ref|YP_002784490.1| hypothetical protein ROP_pKNR-0... 34.3 6.2
gi|15609684|ref|NP_217063.1| hypothetical protein Rv2547 [Mycoba... 34.3 6.4
gi|31983864|ref|NP_858472.1| carnitine racemase [Rhodococcus equ... 34.3 6.9
gi|333980727|ref|YP_004518672.1| CopG-like domain-containing pro... 34.3 7.0
gi|297718638|gb|ADI50253.1| putative DNA binding ribbon-helix-he... 34.3 7.2
gi|15842083|ref|NP_337120.1| CopG family DNA-binding protein [My... 33.9 7.4
gi|10956634|ref|NP_066770.1| hypothetical protein p103_17 [Rhodo... 33.9 8.0
gi|167969003|ref|ZP_02551280.1| hypothetical protein MtubH3_1363... 33.9 8.4
gi|323343235|ref|ZP_08083465.1| HicB family toxin-antitoxin syst... 33.9 8.7
gi|111026914|ref|YP_708892.1| hypothetical protein RHA1_ro11087 ... 33.9 9.1
>gi|15608536|ref|NP_215914.1| hypothetical protein Rv1398c [Mycobacterium tuberculosis H37Rv]
gi|31792592|ref|NP_855085.1| hypothetical protein Mb1433c [Mycobacterium bovis AF2122/97]
gi|121637328|ref|YP_977551.1| hypothetical protein BCG_1459c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
73 more sequence titles
Length=85
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL 60
MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL
Sbjct 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL 60
Query 61 RHLDPPVRRSGGREQHLAQVWRATS 85
RHLDPPVRRSGGREQHLAQVWRATS
Sbjct 61 RHLDPPVRRSGGREQHLAQVWRATS 85
>gi|15840856|ref|NP_335893.1| CopG family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|13881055|gb|AAK45707.1| transcriptional regulator, CopG family [Mycobacterium tuberculosis
CDC1551]
Length=89
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL 60
MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL
Sbjct 5 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL 64
Query 61 RHLDPPVRRSGGREQHLAQVWRATS 85
RHLDPPVRRSGGREQHLAQVWRATS
Sbjct 65 RHLDPPVRRSGGREQHLAQVWRATS 89
>gi|296165042|ref|ZP_06847597.1| CopG family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899690|gb|EFG79141.1| CopG family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=89
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/85 (68%), Positives = 67/85 (79%), Gaps = 0/85 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL 60
MKRTNIYLDEEQ A+LDKLA Q+GVSRAELIR LL AL + D+L SDL AI +SFG L
Sbjct 5 MKRTNIYLDEEQAANLDKLAEQQGVSRAELIRQLLGTALNNSDDNLESDLNAIEESFGAL 64
Query 61 RHLDPPVRRSGGREQHLAQVWRATS 85
R ++ P RR GGRE+HL ++WR TS
Sbjct 65 RDVESPDRRPGGREEHLDRMWRRTS 89
>gi|254550412|ref|ZP_05140859.1| CopG family transcriptional regulator [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=61
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/60 (94%), Positives = 56/60 (94%), Gaps = 1/60 (1%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL 60
MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAI GTL
Sbjct 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAIT-IVGTL 59
>gi|336120130|ref|YP_004574908.1| hypothetical protein MLP_44910 [Microlunatus phosphovorus NM-1]
gi|334687920|dbj|BAK37505.1| hypothetical protein MLP_44910 [Microlunatus phosphovorus NM-1]
Length=90
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/85 (59%), Positives = 63/85 (75%), Gaps = 0/85 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTL 60
M+RTNIYL++ QT +LD+LAA EGVSRAE+IR LL+RAL D LA DL AI+ SFG L
Sbjct 1 MRRTNIYLEDRQTEALDRLAAGEGVSRAEVIRRLLDRALAGNDDRLAEDLAAIDCSFGVL 60
Query 61 RHLDPPVRRSGGREQHLAQVWRATS 85
D P R +G RE+HLA++W+ S
Sbjct 61 AEFDVPDREAGAREEHLARIWQVGS 85
>gi|298251651|ref|ZP_06975454.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297546243|gb|EFH80111.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
Length=63
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
MKRTNIYL+E+Q L + A +EGV AEL+R
Sbjct 1 MKRTNIYLNEKQHEKLQEQAEKEGVPVAELVR 32
>gi|298251603|ref|ZP_06975406.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297546195|gb|EFH80063.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
Length=70
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
MKRTNIYL+E+Q L + A +EGV AEL+R
Sbjct 8 MKRTNIYLNEKQHEKLQEQAEKEGVPVAELVR 39
>gi|298251821|ref|ZP_06975624.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297546413|gb|EFH80281.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
Length=63
Score = 40.8 bits (94), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
MKRTNIYL+E+Q L + A +EGV AEL+R
Sbjct 1 MKRTNIYLNEKQHQKLYEQAEKEGVPVAELVR 32
>gi|298251701|ref|ZP_06975504.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297546293|gb|EFH80161.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
Length=131
Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/32 (57%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
M+RTNIYL+E+Q L + A +EGV AEL+R
Sbjct 1 MRRTNIYLNEKQHQKLHEQAEKEGVPVAELVR 32
>gi|298248398|ref|ZP_06972203.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297551057|gb|EFH84923.1| CopG domain protein DNA-binding domain protein [Ktedonobacter
racemifer DSM 44963]
Length=64
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/32 (57%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
M+RTNIYL+E Q L + A +EGV AEL+R
Sbjct 1 MRRTNIYLNERQHEKLHEQAEKEGVPVAELVR 32
>gi|298248527|ref|ZP_06972332.1| hypothetical protein Krac_6197 [Ktedonobacter racemifer DSM 44963]
gi|297551186|gb|EFH85052.1| hypothetical protein Krac_6197 [Ktedonobacter racemifer DSM 44963]
Length=63
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/45 (49%), Positives = 30/45 (67%), Gaps = 2/45 (4%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDD 45
MKRTN+YL E+Q L + + QEGV+ AEL+R ++ L A DD
Sbjct 1 MKRTNLYLTEKQMERLRQRSEQEGVAIAELVRRAVDSFL--AWDD 43
>gi|298248394|ref|ZP_06972199.1| hypothetical protein Krac_6040 [Ktedonobacter racemifer DSM 44963]
gi|297551053|gb|EFH84919.1| hypothetical protein Krac_6040 [Ktedonobacter racemifer DSM 44963]
Length=63
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/45 (47%), Positives = 30/45 (67%), Gaps = 2/45 (4%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDD 45
MKRTN+YL E+Q L + + +EGV+ AEL+R ++ L A DD
Sbjct 1 MKRTNLYLTEKQMERLHQRSEKEGVAIAELVRRAVDSFL--AWDD 43
>gi|297623628|ref|YP_003705062.1| CopG domain-containing protein DNA-binding domain-containing
protein [Truepera radiovictrix DSM 17093]
gi|297164808|gb|ADI14519.1| CopG domain protein DNA-binding domain protein [Truepera radiovictrix
DSM 17093]
Length=96
Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 25/37 (68%), Gaps = 0/37 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNR 37
MKRT +Y+DE+ L LA Q+G +AEL+R L+R
Sbjct 1 MKRTTVYVDEKTDLELAHLARQQGRPKAELVREALSR 37
>gi|302552930|ref|ZP_07305272.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
gi|302470548|gb|EFL33641.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
Length=103
Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/32 (54%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
MKRTN+Y D E A + + A + GVS AE+IR
Sbjct 18 MKRTNVYADPEDLAIIKEAAKRRGVSEAEIIR 49
>gi|339494320|ref|YP_004714613.1| hypothetical protein PSTAB_2243 [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
gi|338801692|gb|AEJ05524.1| hypothetical protein PSTAB_2243 [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
Length=58
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/47 (39%), Positives = 30/47 (64%), Gaps = 2/47 (4%)
Query 1 MKRT--NIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDD 45
M+RT N++++ E LD+LA ++GVS A L+ L R L++A +
Sbjct 1 MRRTRLNLFIEPEHAGRLDELAPKKGVSNASLVAAALARCLSSASTE 47
>gi|302559526|ref|ZP_07311868.1| hypothetical protein SSRG_03041 [Streptomyces griseoflavus Tu4000]
gi|302477144|gb|EFL40237.1| hypothetical protein SSRG_03041 [Streptomyces griseoflavus Tu4000]
Length=123
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
MKRTN+Y D E A + + A + G+S AE+IR
Sbjct 38 MKRTNVYADPEDLAIIKEAAKRRGISEAEIIR 69
>gi|238619794|ref|YP_002914620.1| hypothetical protein M164_1346 [Sulfolobus islandicus M.16.4]
gi|238380864|gb|ACR41952.1| hypothetical protein M164_1346 [Sulfolobus islandicus M.16.4]
Length=74
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (45%), Positives = 25/36 (70%), Gaps = 0/36 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLN 36
+K+ ++YLDEE +D A + G+S A LIRL+L+
Sbjct 10 LKKISVYLDEETYNRIDTFAKEHGLSTATLIRLILS 45
>gi|329939282|ref|ZP_08288618.1| hypothetical protein SGM_4110 [Streptomyces griseoaurantiacus
M045]
gi|329301511|gb|EGG45405.1| hypothetical protein SGM_4110 [Streptomyces griseoaurantiacus
M045]
Length=88
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
MKRTN+Y D E A + + A + G+S AE+IR
Sbjct 3 MKRTNVYADPEDLAIIKEAAKRRGISEAEIIR 34
>gi|302543814|ref|ZP_07296156.1| hypothetical protein SSOG_04239 [Streptomyces hygroscopicus ATCC
53653]
gi|302461432|gb|EFL24525.1| hypothetical protein SSOG_04239 [Streptomyces himastatinicus
ATCC 53653]
Length=86
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
MKRTN+Y D E A + + A + G+S AE+IR
Sbjct 3 MKRTNVYADPEDLAIIKEAAKRRGISEAEIIR 34
>gi|328883431|emb|CCA56670.1| hypothetical protein SVEN_3384 [Streptomyces venezuelae ATCC
10712]
Length=88
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
MKRTN+Y D E A + + A + G+S AE+IR
Sbjct 3 MKRTNVYADPEDLAIIKEAAKRRGISEAEIIR 34
>gi|226349302|ref|YP_002776416.1| hypothetical protein ROP_pROB01-00650 [Rhodococcus opacus B4]
gi|226245217|dbj|BAH55564.1| hypothetical protein [Rhodococcus opacus B4]
Length=288
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/41 (47%), Positives = 23/41 (57%), Gaps = 0/41 (0%)
Query 3 RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAG 43
R N++ DE LD LAA+ G RAEL+RL R L G
Sbjct 212 RANVHFDEPLRDKLDGLAARVGSDRAELMRLAARRVLEEPG 252
>gi|339782901|gb|AEK08621.1| gp77 [Mycobacterium phage DLane]
Length=57
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (67%), Gaps = 0/36 (0%)
Query 4 TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL 39
N+ L +E A +D+ AA EG++RAE IR LL R L
Sbjct 17 VNVRLGDELLAEVDEYAAAEGIARAEAIRHLLRRGL 52
>gi|189425379|ref|YP_001952556.1| CopG family transcriptional regulator [Geobacter lovleyi SZ]
gi|189421638|gb|ACD96036.1| CopG domain protein DNA-binding domain protein [Geobacter lovleyi
SZ]
Length=102
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 25/37 (68%), Gaps = 0/37 (0%)
Query 3 RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL 39
RT IY+ + TA L +LA+ GVS+AE++R LL L
Sbjct 55 RTTIYVGSDTTAVLTELASAHGVSKAEVLRRLLTAYL 91
>gi|294630479|ref|ZP_06709039.1| hypothetical protein SSTG_02480 [Streptomyces sp. e14]
gi|292833812|gb|EFF92161.1| hypothetical protein SSTG_02480 [Streptomyces sp. e14]
Length=94
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/32 (47%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIR 32
+KRTN+Y D E A + + A + G+S AE+IR
Sbjct 9 LKRTNVYADPEDLAIIKEAAKRRGISEAEIIR 40
>gi|206599979|ref|YP_002241757.1| gp72 [Mycobacterium phage Fruitloop]
gi|206287067|gb|ACI12413.1| gp72 [Mycobacterium phage Fruitloop]
Length=67
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/36 (48%), Positives = 24/36 (67%), Gaps = 0/36 (0%)
Query 4 TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL 39
N+ L ++ A +D+ AA EG++RAE IR LL R L
Sbjct 27 VNVRLGDDLLAEVDEYAAAEGIARAEAIRHLLRRGL 62
>gi|345102696|gb|AEN70297.1| hypothetical protein [Mycobacterium phage Jebeks]
Length=57
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/36 (48%), Positives = 24/36 (67%), Gaps = 0/36 (0%)
Query 4 TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL 39
N+ L ++ A +D+ AA EG++RAE IR LL R L
Sbjct 17 VNVRLGDDLLAEVDEYAAAEGIARAEAIRHLLRRGL 52
>gi|226334818|ref|YP_002784490.1| hypothetical protein ROP_pKNR-00460 [Rhodococcus opacus B4]
gi|226246038|dbj|BAH56138.1| hypothetical protein [Rhodococcus opacus B4]
Length=305
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/41 (44%), Positives = 23/41 (57%), Gaps = 0/41 (0%)
Query 3 RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAG 43
R N++ D+ LD LAA+ G RAEL+RL R L G
Sbjct 233 RANVHFDDALRDKLDALAARVGSDRAELMRLAAKRVLDEPG 273
>gi|15609684|ref|NP_217063.1| hypothetical protein Rv2547 [Mycobacterium tuberculosis H37Rv]
gi|31793730|ref|NP_856223.1| hypothetical protein Mb2577 [Mycobacterium bovis AF2122/97]
gi|121638432|ref|YP_978656.1| hypothetical protein BCG_2570 [Mycobacterium bovis BCG str. Pasteur
1173P2]
54 more sequence titles
Length=85
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/62 (38%), Positives = 33/62 (54%), Gaps = 2/62 (3%)
Query 3 RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTLRH 62
RT + L +E+ LD+ A G SR+ELIR ++RA T L A++ S G+ R
Sbjct 2 RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRGSWRG 59
Query 63 LD 64
D
Sbjct 60 RD 61
>gi|31983864|ref|NP_858472.1| carnitine racemase [Rhodococcus equi]
gi|215481760|ref|YP_002332912.1| hypothetical protein pVAPA_0720 [Rhodococcus equi]
gi|10801072|dbj|BAB16626.1| carnitine racemase [Rhodococcus equi]
gi|198040916|emb|CAQ30413.1| hypothetical protein pVAPA_0720 [Rhodococcus equi]
Length=140
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/33 (46%), Positives = 24/33 (73%), Gaps = 0/33 (0%)
Query 5 NIYLDEEQTASLDKLAAQEGVSRAELIRLLLNR 37
N++LD A LD LAA+ G +RAE++R+ ++R
Sbjct 58 NMHLDMPTRAELDGLAARHGTTRAEIMRIAVDR 90
>gi|333980727|ref|YP_004518672.1| CopG-like domain-containing protein DNA-binding protein [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333824208|gb|AEG16871.1| CopG-like domain-containing protein DNA-binding protein [Desulfotomaculum
kuznetsovii DSM 6115]
Length=84
Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 28/44 (64%), Gaps = 0/44 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGD 44
M+RT IYL +Q +L A ++G+S AELIR +++ L G+
Sbjct 1 MQRTQIYLHPDQHRALLNEARRKGISLAELIRQIVSEHLERQGE 44
>gi|297718638|gb|ADI50253.1| putative DNA binding ribbon-helix-helix protein [Rhodococcus
equi]
Length=140
Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/34 (45%), Positives = 24/34 (71%), Gaps = 0/34 (0%)
Query 4 TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNR 37
N++LD A LD LAA+ G +RAE++R+ ++R
Sbjct 57 VNMHLDMPTRAELDGLAARHGTTRAEIMRIAVDR 90
>gi|15842083|ref|NP_337120.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
gi|167968844|ref|ZP_02551121.1| DNA-binding protein, CopG family [Mycobacterium tuberculosis
H37Ra]
gi|254232668|ref|ZP_04925995.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
19 more sequence titles
Length=90
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/62 (38%), Positives = 33/62 (54%), Gaps = 2/62 (3%)
Query 3 RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTLRH 62
RT + L +E+ LD+ A G SR+ELIR ++RA T L A++ S G+ R
Sbjct 7 RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRGSWRG 64
Query 63 LD 64
D
Sbjct 65 RD 66
>gi|10956634|ref|NP_066770.1| hypothetical protein p103_17 [Rhodococcus equi]
gi|10657882|gb|AAG21721.1| unknown [Rhodococcus equi]
Length=140
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/34 (45%), Positives = 24/34 (71%), Gaps = 0/34 (0%)
Query 4 TNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNR 37
N++LD A LD LAA+ G +RAE++R+ ++R
Sbjct 57 VNMHLDMPTRAELDCLAARHGTTRAEIMRIAVDR 90
>gi|167969003|ref|ZP_02551280.1| hypothetical protein MtubH3_13632 [Mycobacterium tuberculosis
H37Ra]
Length=71
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/42 (41%), Positives = 26/42 (62%), Gaps = 0/42 (0%)
Query 1 MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTA 42
M +T +YL +E AS+ + A Q GVS A++IR + A+ A
Sbjct 1 MDKTTVYLPDELKASVKRAARQRGVSEAQVIRESIRAAVGGA 42
>gi|323343235|ref|ZP_08083465.1| HicB family toxin-antitoxin system [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322462963|gb|EFY08159.1| HicB family toxin-antitoxin system [Erysipelothrix rhusiopathiae
ATCC 19414]
Length=54
Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/38 (43%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 2 KRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRAL 39
KR N+ ++EE SLD +A G+SR+ I +L+N+ L
Sbjct 4 KRLNVMVEEEIIKSLDAVAEDYGLSRSSYIAMLINKEL 41
>gi|111026914|ref|YP_708892.1| hypothetical protein RHA1_ro11087 [Rhodococcus jostii RHA1]
gi|110825453|gb|ABH00734.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=455
Score = 33.9 bits (76), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/64 (41%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 3 RTNIYLDEEQTASLDKLAAQEGVSR-AELIRLLLNRALTTAGDDLASDLQAINDSFGTLR 61
RT +YL+ L+KL ++ G +R A IR+ + R L GD LA+DL I GT R
Sbjct 158 RTRVYLNRSTLVRLEKLISRNGDARTAAAIRVAVRRLLDNPGD-LAADLATI----GTSR 212
Query 62 HLDP 65
L P
Sbjct 213 DLTP 216
Lambda K H
0.316 0.130 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131466506940
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40