BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1401
Length=200
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840859|ref|NP_335896.1| hypothetical protein MT1445 [Mycoba... 389 2e-106
gi|15608539|ref|NP_215917.1| hypothetical protein Rv1401 [Mycoba... 388 2e-106
gi|289745153|ref|ZP_06504531.1| conserved hypothetical protein [... 388 2e-106
gi|308375450|ref|ZP_07443968.2| membrane protein [Mycobacterium ... 388 3e-106
gi|289554808|ref|ZP_06444018.1| membrane protein [Mycobacterium ... 387 3e-106
gi|254364285|ref|ZP_04980331.1| hypothetical membrane protein [M... 387 4e-106
gi|240172970|ref|ZP_04751628.1| membrane protein [Mycobacterium ... 294 4e-78
gi|183982223|ref|YP_001850514.1| membrane protein [Mycobacterium... 288 2e-76
gi|254821101|ref|ZP_05226102.1| hypothetical protein MintA_14287... 285 3e-75
gi|342858679|ref|ZP_08715334.1| hypothetical protein MCOL_07376 ... 276 1e-72
gi|118617411|ref|YP_905743.1| membrane protein [Mycobacterium ul... 272 2e-71
gi|254775825|ref|ZP_05217341.1| hypothetical protein MaviaA2_143... 265 2e-69
gi|118464847|ref|YP_882558.1| hypothetical protein MAV_3376 [Myc... 265 2e-69
gi|296170738|ref|ZP_06852310.1| YhhN family protein [Mycobacteri... 264 4e-69
gi|336461626|gb|EGO40491.1| putative membrane protein [Mycobacte... 262 2e-68
gi|41407227|ref|NP_960063.1| hypothetical protein MAP1129 [Mycob... 261 3e-68
gi|333990939|ref|YP_004523553.1| hypothetical protein JDM601_229... 225 2e-57
gi|108799345|ref|YP_639542.1| YhhN-like protein [Mycobacterium s... 214 5e-54
gi|126435003|ref|YP_001070694.1| YhhN family protein [Mycobacter... 213 9e-54
gi|145224316|ref|YP_001134994.1| YhhN family protein [Mycobacter... 207 8e-52
gi|118468080|ref|YP_887376.1| hypothetical protein MSMEG_3060 [M... 207 1e-51
gi|120403667|ref|YP_953496.1| YhhN family protein [Mycobacterium... 204 5e-51
gi|315444648|ref|YP_004077527.1| hypothetical protein Mspyr1_307... 192 2e-47
gi|339327707|ref|YP_004687400.1| hypothetical protein CNE_1c3627... 169 2e-40
gi|194291204|ref|YP_002007111.1| hypothetical protein RALTA_A313... 161 4e-38
gi|113869611|ref|YP_728100.1| hypothetical protein H16_A3675 [Ra... 158 5e-37
gi|299065165|emb|CBJ36330.1| conserved membrane protein of unkno... 149 2e-34
gi|300689797|ref|YP_003750792.1| hypothetical protein RPSI07_009... 149 3e-34
gi|17548070|ref|NP_521472.1| hypothetical protein RSc3353 [Ralst... 149 3e-34
gi|187930611|ref|YP_001901098.1| YhhN family protein [Ralstonia ... 148 5e-34
gi|241664801|ref|YP_002983161.1| YhhN family protein [Ralstonia ... 147 6e-34
gi|206587270|emb|CAQ17854.1| conserved hypothetical protein [Ral... 147 9e-34
gi|207744848|ref|YP_002261240.1| hypothetical protein RSIPO_0306... 147 9e-34
gi|334194207|gb|AEG67392.1| conserved hypothetical protein [Rals... 147 9e-34
gi|309780391|ref|ZP_07675142.1| conserved hypothetical protein [... 146 2e-33
gi|83749543|ref|ZP_00946530.1| Hypothetical protein RRSL_00793 [... 145 4e-33
gi|94312461|ref|YP_585671.1| hypothetical protein Rmet_3530 [Cup... 143 2e-32
gi|73543066|ref|YP_297586.1| YhhN-like [Ralstonia eutropha JMP13... 140 1e-31
gi|344173066|emb|CCA85736.1| conserved membrane hypothetical pro... 133 1e-29
gi|300702478|ref|YP_003744078.1| hypothetical protein RCFBP_1011... 130 1e-28
gi|171318781|ref|ZP_02907920.1| YhhN family protein [Burkholderi... 122 3e-26
gi|78061996|ref|YP_371904.1| membrane protein, YhhN-like [Burkho... 119 3e-25
gi|254254213|ref|ZP_04947530.1| hypothetical protein BDAG_03505 ... 119 4e-25
gi|134293879|ref|YP_001117615.1| YhhN family protein [Burkholder... 116 1e-24
gi|115358816|ref|YP_775954.1| YhhN family protein [Burkholderia ... 116 2e-24
gi|172063546|ref|YP_001811197.1| YhhN family protein [Burkholder... 115 4e-24
gi|206563662|ref|YP_002234425.1| hypothetical protein BCAM1813 [... 110 1e-22
gi|107026049|ref|YP_623560.1| YhhN-like [Burkholderia cenocepaci... 108 6e-22
gi|254248141|ref|ZP_04941461.1| conserved hypothetical protein [... 107 1e-21
gi|325520713|gb|EGC99747.1| YhhN-like membrane protein [Burkhold... 106 2e-21
>gi|15840859|ref|NP_335896.1| hypothetical protein MT1445 [Mycobacterium tuberculosis CDC1551]
gi|148822620|ref|YP_001287375.1| hypothetical protein TBFG_11430 [Mycobacterium tuberculosis F11]
gi|167968440|ref|ZP_02550717.1| hypothetical membrane protein [Mycobacterium tuberculosis H37Ra]
7 more sequence titles
Length=261
Score = 389 bits (998), Expect = 2e-106, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF
Sbjct 62 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 121
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV
Sbjct 122 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 181
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI
Sbjct 182 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 241
Query 181 TAGFFFGREVPDNAAAPTDS 200
TAGFFFGREVPDNAAAPTDS
Sbjct 242 TAGFFFGREVPDNAAAPTDS 261
>gi|15608539|ref|NP_215917.1| hypothetical protein Rv1401 [Mycobacterium tuberculosis H37Rv]
gi|31792595|ref|NP_855088.1| hypothetical protein Mb1436 [Mycobacterium bovis AF2122/97]
gi|121637331|ref|YP_977554.1| hypothetical protein BCG_1462 [Mycobacterium bovis BCG str. Pasteur
1173P2]
38 more sequence titles
Length=200
Score = 388 bits (997), Expect = 2e-106, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF
Sbjct 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV
Sbjct 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI
Sbjct 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
Query 181 TAGFFFGREVPDNAAAPTDS 200
TAGFFFGREVPDNAAAPTDS
Sbjct 181 TAGFFFGREVPDNAAAPTDS 200
>gi|289745153|ref|ZP_06504531.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308231830|ref|ZP_07413921.2| membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308369789|ref|ZP_07419069.2| membrane protein [Mycobacterium tuberculosis SUMu002]
21 more sequence titles
Length=231
Score = 388 bits (997), Expect = 2e-106, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF
Sbjct 32 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 91
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV
Sbjct 92 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 151
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI
Sbjct 152 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 211
Query 181 TAGFFFGREVPDNAAAPTDS 200
TAGFFFGREVPDNAAAPTDS
Sbjct 212 TAGFFFGREVPDNAAAPTDS 231
>gi|308375450|ref|ZP_07443968.2| membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308346285|gb|EFP35136.1| membrane protein [Mycobacterium tuberculosis SUMu007]
Length=236
Score = 388 bits (996), Expect = 3e-106, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF
Sbjct 37 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 96
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV
Sbjct 97 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 156
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI
Sbjct 157 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 216
Query 181 TAGFFFGREVPDNAAAPTDS 200
TAGFFFGREVPDNAAAPTDS
Sbjct 217 TAGFFFGREVPDNAAAPTDS 236
>gi|289554808|ref|ZP_06444018.1| membrane protein [Mycobacterium tuberculosis KZN 605]
gi|289439440|gb|EFD21933.1| membrane protein [Mycobacterium tuberculosis KZN 605]
gi|326903023|gb|EGE49956.1| hypothetical protein TBPG_00883 [Mycobacterium tuberculosis W-148]
gi|328459297|gb|AEB04720.1| membrane protein [Mycobacterium tuberculosis KZN 4207]
gi|339294379|gb|AEJ46490.1| hypothetical protein CCDC5079_1300 [Mycobacterium tuberculosis
CCDC5079]
gi|339298016|gb|AEJ50126.1| hypothetical protein CCDC5180_1289 [Mycobacterium tuberculosis
CCDC5180]
Length=237
Score = 387 bits (995), Expect = 3e-106, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF
Sbjct 38 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 97
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV
Sbjct 98 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 157
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI
Sbjct 158 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 217
Query 181 TAGFFFGREVPDNAAAPTDS 200
TAGFFFGREVPDNAAAPTDS
Sbjct 218 TAGFFFGREVPDNAAAPTDS 237
>gi|254364285|ref|ZP_04980331.1| hypothetical membrane protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134149799|gb|EBA41844.1| hypothetical membrane protein [Mycobacterium tuberculosis str.
Haarlem]
Length=250
Score = 387 bits (995), Expect = 4e-106, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF
Sbjct 51 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 110
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV
Sbjct 111 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 170
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI
Sbjct 171 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 230
Query 181 TAGFFFGREVPDNAAAPTDS 200
TAGFFFGREVPDNAAAPTDS
Sbjct 231 TAGFFFGREVPDNAAAPTDS 250
>gi|240172970|ref|ZP_04751628.1| membrane protein [Mycobacterium kansasii ATCC 12478]
Length=245
Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 158/199 (80%), Positives = 174/199 (88%), Gaps = 0/199 (0%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQP FKASMAVLLA AA+AHPI RERRWLVPALL SA GDWLLAIPWWT +FVFGLG+F
Sbjct 46 ILQPPFKASMAVLLALAAIAHPIARERRWLVPALLFSAAGDWLLAIPWWTPSFVFGLGSF 105
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCF+GA+LPLA APSR R+A VV MCV + LLVWFWPHLG++ LT+PVTVY++
Sbjct 106 LLAHLCFLGAMLPLALGRAPSRARLAPVVLMCVGAISLLVWFWPHLGQEKLTVPVTVYML 165
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
AL+AMVCTA LARLPTIWTAVGA+ FA SDSMI I RFILGNEALAVPIWWSYAAAEILI
Sbjct 166 ALTAMVCTAFLARLPTIWTAVGALSFAVSDSMIAISRFILGNEALAVPIWWSYAAAEILI 225
Query 181 TAGFFFGREVPDNAAAPTD 199
TAGFFFGRE+P AA P D
Sbjct 226 TAGFFFGREIPAGAAEPAD 244
>gi|183982223|ref|YP_001850514.1| membrane protein [Mycobacterium marinum M]
gi|183175549|gb|ACC40659.1| membrane protein [Mycobacterium marinum M]
Length=236
Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/200 (75%), Positives = 168/200 (84%), Gaps = 0/200 (0%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQP FKASMAVLLA AA AHPI RERRWL+ ALL SA GDWLLAIPWWT +FV GLG+F
Sbjct 37 ILQPPFKASMAVLLALAAAAHPIARERRWLIAALLFSAAGDWLLAIPWWTQSFVLGLGSF 96
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCF+GA+LP+A A PSR R+AA MCV S GLL+WFWPHLG++ LTIPVTVYI+
Sbjct 97 LLAHLCFLGAMLPMAWGAVPSRPRIAAAALMCVVSVGLLIWFWPHLGQEKLTIPVTVYIL 156
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
L+AMVCTA + RLPTIWTAVGA+ FA SDSMI I RFILGNEALAVPIWW+YAAAEILI
Sbjct 157 VLTAMVCTAFVTRLPTIWTAVGALSFAVSDSMIAISRFILGNEALAVPIWWAYAAAEILI 216
Query 181 TAGFFFGREVPDNAAAPTDS 200
TAGFFFGR++ DN A D
Sbjct 217 TAGFFFGRDISDNGPAAVDG 236
>gi|254821101|ref|ZP_05226102.1| hypothetical protein MintA_14287 [Mycobacterium intracellulare
ATCC 13950]
Length=247
Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/211 (72%), Positives = 170/211 (81%), Gaps = 11/211 (5%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQPAFKASMA+LL AA H RERRWL+PALLLSA GDW+LAIPWWT +F GL AF
Sbjct 37 VLQPAFKASMAILLMLAAAGHGCVRERRWLMPALLLSALGDWVLAIPWWTLSFEIGLAAF 96
Query 61 LLAHLCFIGALLPL-------ARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTI 113
LLAH+CFIGALLPL ++ P+ R+AAVV MC+ S LLVWFWPHLG D LT+
Sbjct 97 LLAHMCFIGALLPLVPPLSWSSQAERPAALRIAAVVLMCLVSIALLVWFWPHLGPDKLTL 156
Query 114 PVTVYIVALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSY 173
PVTVYIV L+AMVCTALLA++PTIWTAVGAVCFAASDSMI I RFILGNEALAVPIWWSY
Sbjct 157 PVTVYIVVLTAMVCTALLAKMPTIWTAVGAVCFAASDSMIAISRFILGNEALAVPIWWSY 216
Query 174 AAAEILITAGFFFGREVP----DNAAAPTDS 200
AAA+ILITAGFFFGRE+P +AA P +
Sbjct 217 AAAQILITAGFFFGRELPGQDGGDAAPPAEG 247
>gi|342858679|ref|ZP_08715334.1| hypothetical protein MCOL_07376 [Mycobacterium colombiense CECT
3035]
gi|342134383|gb|EGT87563.1| hypothetical protein MCOL_07376 [Mycobacterium colombiense CECT
3035]
Length=249
Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/197 (75%), Positives = 162/197 (83%), Gaps = 4/197 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QPAFKASMA+LL AA H + RERRWL+ ALLLSA GDW+LAIPWWT +FV GL AFLL
Sbjct 40 QPAFKASMALLLTLAAAGHAVVRERRWLMAALLLSAVGDWVLAIPWWTLSFVVGLAAFLL 99
Query 63 AHLCFIGALLPL----ARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVY 118
AH+CF+GALLPL ++ A PS RV AVV MC AS LL WFWPHLG + LT+PVTVY
Sbjct 100 AHMCFVGALLPLVPTFSKDAPPSTARVVAVVLMCAASIVLLGWFWPHLGAEKLTLPVTVY 159
Query 119 IVALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEI 178
IV L+AMVCTALLA+LPTIWTAVGAVCFAASDSMI I RFILGNEAL VPIWWSYAAA+I
Sbjct 160 IVVLTAMVCTALLAKLPTIWTAVGAVCFAASDSMIAIARFILGNEALEVPIWWSYAAAQI 219
Query 179 LITAGFFFGREVPDNAA 195
LITAGFFFGRE P +
Sbjct 220 LITAGFFFGREFPAQQS 236
>gi|118617411|ref|YP_905743.1| membrane protein [Mycobacterium ulcerans Agy99]
gi|118569521|gb|ABL04272.1| membrane protein [Mycobacterium ulcerans Agy99]
Length=261
Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/200 (74%), Positives = 167/200 (84%), Gaps = 0/200 (0%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQP FKASMAVLLA AA AH I RERRWL+ ALL SA GDWLLAIPWWT +FV GLG+F
Sbjct 62 ILQPPFKASMAVLLALAAAAHAIARERRWLIAALLFSAAGDWLLAIPWWTQSFVLGLGSF 121
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCF+GA+LP+A A PSR R+AA MCV S GLL+WFWPHLG++NLTIP+TVYI+
Sbjct 122 LLAHLCFLGAMLPMAWGAVPSRPRIAAAALMCVVSVGLLIWFWPHLGQENLTIPMTVYIL 181
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
L+AMVCTA + RL TIWTAVGA+ FA SDSMI I RFILGNEALAVPIWW+YAAAEILI
Sbjct 182 VLTAMVCTAFVTRLSTIWTAVGALSFAVSDSMIAISRFILGNEALAVPIWWAYAAAEILI 241
Query 181 TAGFFFGREVPDNAAAPTDS 200
TAGFFFGR++ DN A D
Sbjct 242 TAGFFFGRDISDNGPAAVDG 261
>gi|254775825|ref|ZP_05217341.1| hypothetical protein MaviaA2_14305 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=263
Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/195 (74%), Positives = 160/195 (83%), Gaps = 7/195 (3%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQPAFKASMA+LL AA H RERRWL+PALLLSA GDW+LA+PWWT +F+ GL AF
Sbjct 46 VLQPAFKASMALLLTLAAAGHGQVRERRWLMPALLLSAVGDWVLALPWWTLSFLVGLAAF 105
Query 61 LLAHLCFIGALLPL-------ARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTI 113
L AH+CFIG LLPL + PS R+AA V MC+AS GLLVWFWP LG D LT+
Sbjct 106 LFAHMCFIGVLLPLVPLPSGASGPGRPSTPRIAAAVLMCLASIGLLVWFWPRLGPDKLTL 165
Query 114 PVTVYIVALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSY 173
PVT+YIV L+AMVC ALLA+LPTIWTAVGAVCFAASDSMI IGRFILGNEALAVPIWW+Y
Sbjct 166 PVTLYIVVLTAMVCAALLAKLPTIWTAVGAVCFAASDSMIAIGRFILGNEALAVPIWWAY 225
Query 174 AAAEILITAGFFFGR 188
AAA+ILITAGFFFGR
Sbjct 226 AAAQILITAGFFFGR 240
>gi|118464847|ref|YP_882558.1| hypothetical protein MAV_3376 [Mycobacterium avium 104]
gi|118166134|gb|ABK67031.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=263
Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/195 (74%), Positives = 160/195 (83%), Gaps = 7/195 (3%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQPAFKASMA+LL AA H RERRWL+PALLLSA GDW+LA+PWWT +F+ GL AF
Sbjct 46 VLQPAFKASMALLLTLAAAGHGQVRERRWLMPALLLSAVGDWVLALPWWTLSFLVGLAAF 105
Query 61 LLAHLCFIGALLPL-------ARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTI 113
L AH+CFIG LLPL + PS R+AA V MC+AS GLLVWFWP LG D LT+
Sbjct 106 LFAHMCFIGVLLPLVPLPSGASGPGRPSTPRIAAAVLMCLASIGLLVWFWPRLGPDKLTL 165
Query 114 PVTVYIVALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSY 173
PVT+YIV L+AMVC ALLA+LPTIWTAVGAVCFAASDSMI IGRFILGNEALAVPIWW+Y
Sbjct 166 PVTLYIVVLTAMVCAALLAKLPTIWTAVGAVCFAASDSMIAIGRFILGNEALAVPIWWAY 225
Query 174 AAAEILITAGFFFGR 188
AAA+ILITAGFFFGR
Sbjct 226 AAAQILITAGFFFGR 240
>gi|296170738|ref|ZP_06852310.1| YhhN family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894553|gb|EFG74290.1| YhhN family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=250
Score = 264 bits (675), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 150/197 (77%), Positives = 170/197 (87%), Gaps = 3/197 (1%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQP FKASMA+LL AAA H + RERRWL+PALLLSATGDW LAIPWWT +FV GL AF
Sbjct 52 VLQPLFKASMALLLTAAAAGHAVVRERRWLMPALLLSATGDWALAIPWWTQSFVVGLAAF 111
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
LLAHLCF+GAL+PLA + P + R+AAVVAMC+A+AGLL WFWP LGK LT+PVT YIV
Sbjct 112 LLAHLCFLGALVPLAARR-PPKPRIAAVVAMCLATAGLLAWFWPRLGK--LTLPVTFYIV 168
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
L+AMVC AL+A+LPTIWTAVGAVCFAASDS+I IGRFILGNEALAVPIWWSYAAA +L+
Sbjct 169 VLTAMVCAALVAQLPTIWTAVGAVCFAASDSLIAIGRFILGNEALAVPIWWSYAAALVLM 228
Query 181 TAGFFFGREVPDNAAAP 197
TAGFFFGRE P +A AP
Sbjct 229 TAGFFFGREAPVDAGAP 245
>gi|336461626|gb|EGO40491.1| putative membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=244
Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/195 (73%), Positives = 159/195 (82%), Gaps = 7/195 (3%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQPAFKASMA+LL AA H RERRWL+PALLLSA GDW+LA+PWWT +F+ GL AF
Sbjct 27 VLQPAFKASMALLLTLAAAGHGQVRERRWLMPALLLSAVGDWVLALPWWTLSFLVGLAAF 86
Query 61 LLAHLCFIGALLPL-------ARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTI 113
L A +CFIG LLPL + PS R+AA V MC+AS GLLVWFWP LG D LT+
Sbjct 87 LFAPMCFIGVLLPLVPLPSGASGPGRPSTPRIAAAVLMCLASIGLLVWFWPRLGPDKLTL 146
Query 114 PVTVYIVALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSY 173
PVT+YIV L+AMVC ALLA+LPTIWTAVGAVCFAASDSMI IGRFILGNEALAVPIWW+Y
Sbjct 147 PVTLYIVVLTAMVCAALLAKLPTIWTAVGAVCFAASDSMIAIGRFILGNEALAVPIWWAY 206
Query 174 AAAEILITAGFFFGR 188
AAA+ILITAGFFFGR
Sbjct 207 AAAQILITAGFFFGR 221
>gi|41407227|ref|NP_960063.1| hypothetical protein MAP1129 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395578|gb|AAS03446.1| hypothetical protein MAP_1129 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=263
Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/195 (73%), Positives = 159/195 (82%), Gaps = 7/195 (3%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQPAFKASMA+LL AA H RERRWL+PALLLSA GDW+LA+PWWT +F+ GL AF
Sbjct 46 VLQPAFKASMALLLTLAAAGHGQVRERRWLMPALLLSAVGDWVLALPWWTLSFLVGLAAF 105
Query 61 LLAHLCFIGALLPL-------ARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTI 113
L A +CFIG LLPL + PS R+AA V MC+AS GLLVWFWP LG D LT+
Sbjct 106 LFAPMCFIGVLLPLVPLPSGASGPGRPSTPRIAAAVLMCLASIGLLVWFWPRLGPDKLTL 165
Query 114 PVTVYIVALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSY 173
PVT+YIV L+AMVC ALLA+LPTIWTAVGAVCFAASDSMI IGRFILGNEALAVPIWW+Y
Sbjct 166 PVTLYIVVLTAMVCAALLAKLPTIWTAVGAVCFAASDSMIAIGRFILGNEALAVPIWWAY 225
Query 174 AAAEILITAGFFFGR 188
AAA+ILITAGFFFGR
Sbjct 226 AAAQILITAGFFFGR 240
>gi|333990939|ref|YP_004523553.1| hypothetical protein JDM601_2299 [Mycobacterium sp. JDM601]
gi|333486907|gb|AEF36299.1| membrane protein [Mycobacterium sp. JDM601]
Length=210
Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/193 (67%), Positives = 152/193 (79%), Gaps = 3/193 (1%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QPAFKA+MAVLLA AA AHPI RE RWL+PAL+LSA GDWLLAIPWW +FV GL AFLL
Sbjct 19 QPAFKAAMAVLLAVAAAAHPILREARWLIPALILSAAGDWLLAIPWWEPSFVAGLTAFLL 78
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLCF+GALL LA SRG + + V+ LLVWFWP L ++ +T+PVTVY++ L
Sbjct 79 AHLCFLGALLQLA---VVSRGGLIGAGLVGVSCLALLVWFWPGLSREGMTVPVTVYVLVL 135
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
AMVC ALLA+LPT WTA+GAV FA SD+MIG G+F+LGNE LAVPIWW+YAAA++LITA
Sbjct 136 GAMVCAALLAKLPTRWTALGAVFFAVSDAMIGAGKFVLGNEMLAVPIWWAYAAAQLLITA 195
Query 183 GFFFGREVPDNAA 195
GFFFGR + A
Sbjct 196 GFFFGRSGGEQPA 208
>gi|108799345|ref|YP_639542.1| YhhN-like protein [Mycobacterium sp. MCS]
gi|119868461|ref|YP_938413.1| YhhN family protein [Mycobacterium sp. KMS]
gi|108769764|gb|ABG08486.1| YhhN-like protein [Mycobacterium sp. MCS]
gi|119694550|gb|ABL91623.1| YhhN family protein [Mycobacterium sp. KMS]
Length=252
Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 124/191 (65%), Positives = 143/191 (75%), Gaps = 6/191 (3%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QPA KA AVLLA AA HPI RERRWLVPAL+ SA GD+LLAIPWW +FV GL +FL+
Sbjct 60 QPAVKALAAVLLAVAAAGHPIRRERRWLVPALVFSACGDFLLAIPWWEPSFVLGLASFLV 119
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLCF+ AL+PLA ++AP R AV +A LLVWFWP L D + +PVT YI L
Sbjct 120 AHLCFLAALVPLAARSAP---RSVAVALTVIACGALLVWFWPRLLADGMAVPVTAYITVL 176
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILG---NEALAVPIWWSYAAAEIL 179
AMVC ALLA LPT WTA+GAVCFA SD+MIGIG+F+L EALAVPIWW+YAA+ +L
Sbjct 177 GAMVCAALLADLPTPWTALGAVCFAVSDAMIGIGKFVLAPEDTEALAVPIWWAYAASLLL 236
Query 180 ITAGFFFGREV 190
ITAG FFGR V
Sbjct 237 ITAGLFFGRTV 247
>gi|126435003|ref|YP_001070694.1| YhhN family protein [Mycobacterium sp. JLS]
gi|126234803|gb|ABN98203.1| YhhN family protein [Mycobacterium sp. JLS]
Length=215
Score = 213 bits (543), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 124/191 (65%), Positives = 143/191 (75%), Gaps = 6/191 (3%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QPA KA AVLLA AA HPI RERRWLVPAL+ SA GD+LLAIPWW +FV GL +FL+
Sbjct 23 QPAVKALAAVLLAVAAAGHPIRRERRWLVPALVFSACGDFLLAIPWWEPSFVLGLASFLV 82
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLCF+ AL+PLA ++AP R AV +A LLVWFWP L D + +PVT YI L
Sbjct 83 AHLCFLAALVPLAARSAP---RSVAVALTVIACGALLVWFWPRLLADGMAVPVTAYITVL 139
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILG---NEALAVPIWWSYAAAEIL 179
AMVC ALLA LPT WTA+GAVCFA SD+MIGIG+F+L EALAVPIWW+YAA+ +L
Sbjct 140 GAMVCAALLADLPTPWTALGAVCFAVSDAMIGIGKFVLAPEDTEALAVPIWWAYAASLLL 199
Query 180 ITAGFFFGREV 190
ITAG FFGR V
Sbjct 200 ITAGLFFGRTV 210
>gi|145224316|ref|YP_001134994.1| YhhN family protein [Mycobacterium gilvum PYR-GCK]
gi|145216802|gb|ABP46206.1| YhhN family protein [Mycobacterium gilvum PYR-GCK]
Length=232
Score = 207 bits (526), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 122/194 (63%), Positives = 144/194 (75%), Gaps = 3/194 (1%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQPA KA AVLLA AA+ H + RER WLV ALL SA GD+LLA+PWW +FV GL AF
Sbjct 38 VLQPAVKALAAVLLAGAALTHGVVRERVWLVGALLFSAAGDYLLAMPWWEPSFVLGLAAF 97
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
L+AHLCF+ ALLPLAR+ + RVAAV+ +A A LLVWFWP L + + +PVT YI
Sbjct 98 LVAHLCFLAALLPLARR---TPVRVAAVIVTVLACAALLVWFWPRLLEQGMAVPVTAYIG 154
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
L AMVC ALLA LPT WTA+GAVCFA SD+MIGI F+LG+EALAVPIWW YA + +LI
Sbjct 155 VLGAMVCVALLADLPTPWTALGAVCFAVSDAMIGINVFVLGSEALAVPIWWVYATSLLLI 214
Query 181 TAGFFFGREVPDNA 194
TAG FGR +A
Sbjct 215 TAGLLFGRRSEPSA 228
>gi|118468080|ref|YP_887376.1| hypothetical protein MSMEG_3060 [Mycobacterium smegmatis str.
MC2 155]
gi|118169367|gb|ABK70263.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=223
Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/191 (64%), Positives = 138/191 (73%), Gaps = 3/191 (1%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QPA KA AVLLAAAA HPI RERRWLV ALL SA GD+LLAIPWW +FV GL AFL+
Sbjct 36 QPAVKALAAVLLAAAACTHPIRRERRWLVAALLFSAVGDFLLAIPWWEPSFVGGLAAFLV 95
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLCF+ ALLPLAR+ + GR+ AV VA LL WFWP L + + +PVT YI L
Sbjct 96 AHLCFLAALLPLARR---TSGRLTAVAVTVVACLALLAWFWPRLVEQGMAVPVTAYIAVL 152
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
AMVC ALLA LPT WTA GAVCFA SD+MIGI F+ G++ LAVPIWW+YAA+ +LITA
Sbjct 153 GAMVCAALLAGLPTPWTAAGAVCFAVSDAMIGISEFVRGDQLLAVPIWWAYAASLLLITA 212
Query 183 GFFFGREVPDN 193
G F R P
Sbjct 213 GLFTKRGTPAQ 223
>gi|120403667|ref|YP_953496.1| YhhN family protein [Mycobacterium vanbaalenii PYR-1]
gi|119956485|gb|ABM13490.1| YhhN family protein [Mycobacterium vanbaalenii PYR-1]
Length=244
Score = 204 bits (520), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 129/197 (66%), Positives = 149/197 (76%), Gaps = 4/197 (2%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQPA KA AVLLA AA+ H IGRERRWLV ALL SA GD+LLA+PWW +FV GL AF
Sbjct 50 VLQPAVKALAAVLLAGAALTHRIGRERRWLVGALLFSAAGDYLLAMPWWEPSFVLGLAAF 109
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
L+AHLCF+ ALLPLA + P R+AA A+ A A LLVWFWP L + + +PVTVYI
Sbjct 110 LVAHLCFLAALLPLAVSSPP---RLAAAGAVVAACAALLVWFWPRLLEQGMALPVTVYIA 166
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
L AMVCTALLA LPT WTA+GAVCFA SD+MIGI RF+LG+EALAVPIWW+YA + +LI
Sbjct 167 VLGAMVCTALLADLPTPWTALGAVCFAVSDAMIGISRFVLGSEALAVPIWWAYATSLLLI 226
Query 181 TAGFFFGR-EVPDNAAA 196
TAG FGR VP A
Sbjct 227 TAGLLFGRASVPSATPA 243
>gi|315444648|ref|YP_004077527.1| hypothetical protein Mspyr1_30750 [Mycobacterium sp. Spyr1]
gi|315262951|gb|ADT99692.1| predicted membrane protein [Mycobacterium sp. Spyr1]
Length=232
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/194 (64%), Positives = 144/194 (75%), Gaps = 3/194 (1%)
Query 1 MLQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAF 60
+LQPA KA AVLLA AA+ H + RER WLV ALL SA GD+LLA+PWW +FV GL AF
Sbjct 38 VLQPAVKALAAVLLAGAALTHGVVRERVWLVGALLFSAAGDYLLAMPWWEPSFVLGLAAF 97
Query 61 LLAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIV 120
L+AHLCF+ ALLPLAR+ + RVAAVV +A A LLVWFWP L + + +PVT YI
Sbjct 98 LVAHLCFLAALLPLARR---TPVRVAAVVVTVLACAALLVWFWPRLLEQGMAVPVTAYIG 154
Query 121 ALSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILI 180
L AMVC ALLA LPT WTA+GAVCFA SD+MIGI F+LG+EALAVPIWW YA + +LI
Sbjct 155 VLGAMVCVALLADLPTPWTALGAVCFAVSDAMIGINVFVLGSEALAVPIWWVYATSLLLI 214
Query 181 TAGFFFGREVPDNA 194
TAG FGR +A
Sbjct 215 TAGLLFGRRSEPSA 228
>gi|339327707|ref|YP_004687400.1| hypothetical protein CNE_1c36270 [Cupriavidus necator N-1]
gi|338167864|gb|AEI78919.1| hypothetical membrane protein [Cupriavidus necator N-1]
Length=234
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/188 (54%), Positives = 131/188 (70%), Gaps = 4/188 (2%)
Query 2 LQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFL 61
+QPA+K +MAVLLA AA H ERRWLV ALL SA GD LLA+P T++F+ GLGAFL
Sbjct 49 MQPAWKTAMAVLLARAAWFHRPLVERRWLVTALLFSALGDLLLALPTLTFSFMGGLGAFL 108
Query 62 LAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVA 121
LAHL ++ L+PLA P R + A AM + +L FWP++G LT+PV +Y+
Sbjct 109 LAHLAYLRVLVPLAGDTRPHR--LIACGAMLGVAGTMLGRFWPNMGP--LTVPVAIYVGV 164
Query 122 LSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILIT 181
L+AM C+AL+ARLPT A+GA+CFAASD MIGI RF++ E+ + IWW+YAAA++L+
Sbjct 165 LAAMACSALVARLPTPLAALGALCFAASDMMIGIARFLVPFESFQLGIWWTYAAAQVLLV 224
Query 182 AGFFFGRE 189
AG GR
Sbjct 225 AGIVAGRR 232
>gi|194291204|ref|YP_002007111.1| hypothetical protein RALTA_A3131 [Cupriavidus taiwanensis LMG
19424]
gi|193225039|emb|CAQ71050.1| conserved hypothetical protein; putative membrane protein [Cupriavidus
taiwanensis LMG 19424]
Length=234
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/190 (54%), Positives = 135/190 (72%), Gaps = 4/190 (2%)
Query 2 LQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFL 61
+QPA+K +MA+LLA AA H + ERRWLV ALL SA GD+LLA+P +++FV GLGAFL
Sbjct 49 MQPAWKTAMALLLARAAWFHRVPGERRWLVTALLCSALGDFLLALPALSFSFVGGLGAFL 108
Query 62 LAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVA 121
LAHL ++ L+PLA P R + A AM + +L FWP+LG L +PVT+Y+
Sbjct 109 LAHLAYLRLLVPLAGDTRPHR--LIACGAMLGVAGTMLGRFWPNLG--TLMVPVTLYVGV 164
Query 122 LSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILIT 181
L+AMVC+AL+ARLPT A+GA+CFAASD MIGI RF++ E+ + IWW+YAAA++L+
Sbjct 165 LAAMVCSALVARLPTPLAALGALCFAASDMMIGIARFLVPFESFQLGIWWTYAAAQVLLV 224
Query 182 AGFFFGREVP 191
AG GR P
Sbjct 225 AGLVSGRARP 234
>gi|113869611|ref|YP_728100.1| hypothetical protein H16_A3675 [Ralstonia eutropha H16]
gi|113528387|emb|CAJ94732.1| conserved hypothetical membrane protein [Ralstonia eutropha H16]
Length=234
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/188 (54%), Positives = 132/188 (71%), Gaps = 4/188 (2%)
Query 2 LQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFL 61
+QPA+K +MA+LLA AA H ERRWLV ALL SA GD LLA+P T++F+ GLGAFL
Sbjct 49 MQPAWKTAMALLLARAAWFHRPLVERRWLVTALLFSALGDLLLALPTLTFSFMGGLGAFL 108
Query 62 LAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVA 121
LAHL ++ L+PLA P R + A AM + +L FWP++G LT+PV VY+
Sbjct 109 LAHLAYLRVLVPLAGDTRPHR--LIACGAMLGVAGTMLGRFWPNMGP--LTVPVAVYVGV 164
Query 122 LSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILIT 181
L+AM C+AL+ARLPT A+GA+CFAASD MIGI RF++ E+ + IWW+YAAA++L+
Sbjct 165 LAAMACSALVARLPTPLAALGALCFAASDMMIGIARFLVPFESFQLGIWWTYAAAQVLLV 224
Query 182 AGFFFGRE 189
AG GRE
Sbjct 225 AGIVAGRE 232
>gi|299065165|emb|CBJ36330.1| conserved membrane protein of unknown function [Ralstonia solanacearum
CMR15]
Length=253
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/198 (51%), Positives = 123/198 (63%), Gaps = 4/198 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H + RERRWL+ ALL A GD LLA+P +FV GL +FL
Sbjct 59 QPLWKMLMALLLARAASLHEMPRERRWLIGALLFCALGDLLLALPGLRISFVAGLASFLF 118
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L +P R + V A + G+L W+WP LG L+ PV Y++ L
Sbjct 119 AHLCYLRVLVTLRGACSPLR--LIGVGATLGVAIGMLNWYWPGLGV--LSGPVVAYVIVL 174
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMVC ALLARLP TA GAV FAASD+MIGI F+ + IWWSYAAA++LITA
Sbjct 175 SAMVCAALLARLPGPLTAWGAVAFAASDAMIGISVFVFPFNDYELAIWWSYAAAQLLITA 234
Query 183 GFFFGREVPDNAAAPTDS 200
G R P A P S
Sbjct 235 GLLTRRAPPPRRAMPVAS 252
>gi|300689797|ref|YP_003750792.1| hypothetical protein RPSI07_0092 [Ralstonia solanacearum PSI07]
gi|299076857|emb|CBJ49470.1| conserved membrane protein of unknown function [Ralstonia solanacearum
PSI07]
gi|344168423|emb|CCA80706.1| conserved membrane hypothetical protein [blood disease bacterium
R229]
Length=258
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/198 (50%), Positives = 123/198 (63%), Gaps = 4/198 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H + RERRWLV ALL SA GD LLA+P +FV GL +FL
Sbjct 64 QPLWKMLMALLLARAASRHEMQRERRWLVGALLFSALGDLLLALPGLRISFVAGLASFLF 123
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
+HLC++ L+ L +P R + V A+ + G+L W+WP LG +L PV Y++ L
Sbjct 124 SHLCYLRVLVSLRGACSPLR--LFGVGAVLGVAIGMLKWYWPGLG--DLRGPVIAYVIVL 179
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMVC ALLARLP TA GA FAASD+M+GI F+ + IWWSYAAA++LITA
Sbjct 180 SAMVCAALLARLPGPLTAWGATAFAASDAMVGISVFVFPFNDHELAIWWSYAAAQLLITA 239
Query 183 GFFFGREVPDNAAAPTDS 200
G R P P S
Sbjct 240 GLLTRRAPPPRRTLPAAS 257
>gi|17548070|ref|NP_521472.1| hypothetical protein RSc3353 [Ralstonia solanacearum GMI1000]
gi|17430376|emb|CAD17141.1| probable transmembrane protein [Ralstonia solanacearum GMI1000]
Length=253
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/198 (51%), Positives = 122/198 (62%), Gaps = 4/198 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H + RERRWL+ ALL A GD LLA+P AFV GL +FL
Sbjct 59 QPLWKMLMALLLARAASLHEMPRERRWLIGALLFCALGDLLLALPGLRIAFVAGLASFLF 118
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L +P R + V A + G+L W+WP LG L+ PV Y++ L
Sbjct 119 AHLCYLRVLVTLRGACSPLR--LIGVGATLGVAIGMLNWYWPGLGV--LSGPVVAYVIVL 174
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMVC ALLARLP TA GAV FAASD+MIGI F+ + IWWSYAAA++LITA
Sbjct 175 SAMVCAALLARLPGPLTAWGAVAFAASDAMIGISVFVFPFNDYELAIWWSYAAAQLLITA 234
Query 183 GFFFGREVPDNAAAPTDS 200
G R P P S
Sbjct 235 GLLTRRAPPPRCTMPAAS 252
>gi|187930611|ref|YP_001901098.1| YhhN family protein [Ralstonia pickettii 12J]
gi|187727501|gb|ACD28666.1| YhhN family protein [Ralstonia pickettii 12J]
Length=254
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/193 (51%), Positives = 125/193 (65%), Gaps = 4/193 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H I RERRWL+ A+ SA GD LA+PW +++F+ GLG FLL
Sbjct 64 QPLWKMLMALLLARAASLHEIPRERRWLIGAMGFSAMGDLWLALPWLSFSFMAGLGCFLL 123
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L + S R+ V M + G+L+W+WP LG+ L PV Y++ L
Sbjct 124 AHLCYLRVLVGL--RGVSSAIRMIGVGVMIGVAIGMLLWYWPGLGE--LKGPVIAYMLVL 179
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMVC ALLARLP TA GA+ FAASD+MIGI F+ + IWWSYAAA++LI+A
Sbjct 180 SAMVCAALLARLPGPLTAWGALAFAASDAMIGISVFVFPFTDHELAIWWSYAAAQLLISA 239
Query 183 GFFFGREVPDNAA 195
G R P A
Sbjct 240 GLLTRRTPPARRA 252
>gi|241664801|ref|YP_002983161.1| YhhN family protein [Ralstonia pickettii 12D]
gi|240866828|gb|ACS64489.1| YhhN family protein [Ralstonia pickettii 12D]
Length=254
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/194 (51%), Positives = 125/194 (65%), Gaps = 4/194 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H I RERRWL+ A++ SA GD LA+P ++F+ GLG FLL
Sbjct 64 QPLWKMLMALLLARAASLHEIPRERRWLIGAMMFSALGDLWLALPGLAFSFMAGLGCFLL 123
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L + S R+ V M + G+L+W+WP LG+ L PV Y+V L
Sbjct 124 AHLCYLRVLVGL--RGVSSAIRMIGVGVMIGVAIGMLLWYWPGLGE--LKGPVIAYMVVL 179
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMVC ALLARLP TA GA+ FAASD+MIGI F+ + IWWSYAAA++LI+A
Sbjct 180 SAMVCAALLARLPGPLTAWGALAFAASDAMIGISVFVFPFTDHELAIWWSYAAAQLLISA 239
Query 183 GFFFGREVPDNAAA 196
G R P AA
Sbjct 240 GLLTRRTPPPRRAA 253
>gi|206587270|emb|CAQ17854.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
Length=276
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/192 (51%), Positives = 124/192 (65%), Gaps = 4/192 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H + RERRWL+ ALL SA GD+LLA+P +FV GL +FLL
Sbjct 83 QPLWKMLMALLLARAASLHEMPRERRWLIAALLFSALGDFLLALPGLRVSFVAGLASFLL 142
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L ++ S R+ V A+ G+L+W+WP LG +L PV Y++ L
Sbjct 143 AHLCYLRVLVSLRGES--SALRLLGVGAVLGVGIGMLMWYWPGLG--DLRGPVIAYVIVL 198
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMV ALLARLP TA GA FAASD+M+GI F+ + IWWSYAAA++LITA
Sbjct 199 SAMVSAALLARLPGPLTAWGATAFAASDAMVGISVFVFPFSDHELAIWWSYAAAQLLITA 258
Query 183 GFFFGREVPDNA 194
G R P A
Sbjct 259 GLLTRRAPPRRA 270
>gi|207744848|ref|YP_002261240.1| hypothetical protein RSIPO_03063 [Ralstonia solanacearum IPO1609]
gi|206596258|emb|CAQ63185.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
Length=257
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/192 (51%), Positives = 124/192 (65%), Gaps = 4/192 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H + RERRWL+ ALL SA GD+LLA+P +FV GL +FLL
Sbjct 64 QPLWKMLMALLLARAASLHEMPRERRWLIAALLFSALGDFLLALPGLRVSFVAGLASFLL 123
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L ++ S R+ V A+ G+L+W+WP LG +L PV Y++ L
Sbjct 124 AHLCYLRVLVSLRGES--SALRLLGVGAVLGVGIGMLMWYWPGLG--DLRGPVIAYVIVL 179
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMV ALLARLP TA GA FAASD+M+GI F+ + IWWSYAAA++LITA
Sbjct 180 SAMVSAALLARLPGPLTAWGATAFAASDAMVGISVFVFPFSDHELAIWWSYAAAQLLITA 239
Query 183 GFFFGREVPDNA 194
G R P A
Sbjct 240 GLLTRRAPPRRA 251
>gi|334194207|gb|AEG67392.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
Length=255
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/192 (51%), Positives = 124/192 (65%), Gaps = 4/192 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H + RERRWL+ ALL SA GD+LLA+P +FV GL +FLL
Sbjct 62 QPLWKMLMALLLARAASLHEMPRERRWLIAALLFSALGDFLLALPGLRVSFVAGLASFLL 121
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L ++ S R+ V A+ G+L+W+WP LG +L PV Y++ L
Sbjct 122 AHLCYLRVLVSLRGES--SALRLLGVGAVLGVGIGMLMWYWPGLG--DLRGPVIAYVIVL 177
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMV ALLARLP TA GA FAASD+M+GI F+ + IWWSYAAA++LITA
Sbjct 178 SAMVSAALLARLPGPLTAWGATAFAASDAMVGISVFVFPFSDHELAIWWSYAAAQLLITA 237
Query 183 GFFFGREVPDNA 194
G R P A
Sbjct 238 GLLTRRAPPRRA 249
>gi|309780391|ref|ZP_07675142.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
gi|308921094|gb|EFP66740.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
Length=254
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/194 (50%), Positives = 124/194 (64%), Gaps = 4/194 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H I RERRWL+ A++ SA GD L +P ++F+ GLG FLL
Sbjct 64 QPLWKMLMALLLARAASLHEIPRERRWLIGAMMFSALGDLWLVLPGLAFSFMAGLGCFLL 123
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L + S R+ V M + G+L+W+WP LG+ L PV Y+V L
Sbjct 124 AHLCYLRVLVGL--RGVSSAIRMIGVGVMIGVAIGMLLWYWPGLGE--LKGPVIAYMVVL 179
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMVC ALLARLP TA GA+ FAASD+MIGI F+ + IWWSYAAA++LI+A
Sbjct 180 SAMVCAALLARLPGPLTAWGALAFAASDAMIGISVFVFPFTDHELAIWWSYAAAQLLISA 239
Query 183 GFFFGREVPDNAAA 196
G R P AA
Sbjct 240 GLLTRRTPPPRRAA 253
>gi|83749543|ref|ZP_00946530.1| Hypothetical protein RRSL_00793 [Ralstonia solanacearum UW551]
gi|83723779|gb|EAP70970.1| Hypothetical protein RRSL_00793 [Ralstonia solanacearum UW551]
Length=488
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/192 (51%), Positives = 124/192 (65%), Gaps = 4/192 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H + RERRWL+ ALL SA GD+LLA+P +FV GL +FLL
Sbjct 295 QPLWKMLMALLLARAASLHEMPRERRWLIAALLFSALGDFLLALPGLRVSFVAGLASFLL 354
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L ++ S R+ V A+ G+L+W+WP LG +L PV Y++ L
Sbjct 355 AHLCYLRVLVSLRGES--SALRLLGVGAVLGVGIGMLMWYWPGLG--DLRGPVIAYVIVL 410
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMV ALLARLP TA GA FAASD+M+GI F+ + IWWSYAAA++LITA
Sbjct 411 SAMVSAALLARLPGPLTAWGATAFAASDAMVGISVFVFPFSDHELAIWWSYAAAQLLITA 470
Query 183 GFFFGREVPDNA 194
G R P A
Sbjct 471 GLLTRRAPPRRA 482
>gi|94312461|ref|YP_585671.1| hypothetical protein Rmet_3530 [Cupriavidus metallidurans CH34]
gi|93356313|gb|ABF10402.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
Length=228
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/188 (48%), Positives = 121/188 (65%), Gaps = 6/188 (3%)
Query 3 QPAFKASMAVLLAAAAVAH-PIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFL 61
QP +K +MAV+LA AA H P+G ERRWLV ALL SA GD LLA+P +F+ GLGAFL
Sbjct 45 QPIWKTAMAVMLARAAWFHRPLG-ERRWLVTALLFSALGDLLLALPGLKISFIGGLGAFL 103
Query 62 LAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVA 121
+AHL ++ +P+ P R + + A+ LL FWP+LG +L PVTVYI
Sbjct 104 MAHLAYLRLFVPMMGDLRPHR--LIGCGLIIGAAGALLGRFWPNLG--DLMWPVTVYICV 159
Query 122 LSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILIT 181
L+AM CT +LA LPT A+GA+ F ASD+MIGI +F+ + + IWW+YA A++L+
Sbjct 160 LAAMACTTMLASLPTALAAIGALFFVASDAMIGIAKFLSLFDTYQLGIWWTYAIAQVLLV 219
Query 182 AGFFFGRE 189
AG R+
Sbjct 220 AGVVAERD 227
>gi|73543066|ref|YP_297586.1| YhhN-like [Ralstonia eutropha JMP134]
gi|72120479|gb|AAZ62742.1| YhhN-like protein [Ralstonia eutropha JMP134]
Length=236
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/187 (50%), Positives = 126/187 (68%), Gaps = 4/187 (2%)
Query 2 LQPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFL 61
+QP +K +MA++LA AA H ERRWLV AL+ SA GD+LLA+P +FV GLGAFL
Sbjct 49 MQPVWKTAMALMLARAAWFHRPLSERRWLVVALVFSAIGDFLLAVPALRISFVGGLGAFL 108
Query 62 LAHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVA 121
LAHL ++ L+PLA + R + A A+ + +L FWP+LG L VTVY+V
Sbjct 109 LAHLAYLRILVPLAGDSRSHR--LIACGALIGVAGTMLGRFWPNLG--TLAEGVTVYVVI 164
Query 122 LSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILIT 181
L+AM C+AL+A+LPT TA+GA+CF ASD MIGI RF++ ++ + IWW+Y AA++LI
Sbjct 165 LAAMACSALVAKLPTPLTALGALCFVASDMMIGIARFLVPFDSFQLGIWWTYWAAQVLIV 224
Query 182 AGFFFGR 188
AG R
Sbjct 225 AGIVANR 231
>gi|344173066|emb|CCA85736.1| conserved membrane hypothetical protein [Ralstonia syzygii R24]
Length=258
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 123/198 (63%), Gaps = 4/198 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H + RERRWLV ALL SA GD LLA+P +FV GL +FL
Sbjct 64 QPLWKMLMALLLARAASRHEMQRERRWLVGALLFSALGDLLLALPGLRISFVAGLASFLF 123
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L +P R + V A+ + G+L W+WP LG +L PV Y++ L
Sbjct 124 AHLCYLRVLVSLRGACSPLR--LIGVGAVLGVAIGMLKWYWPGLG--DLRGPVIAYMIVL 179
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMVC ALLARLP +A GA FAASD+MIGI F+ + IWWSYAAA++LITA
Sbjct 180 SAMVCAALLARLPGPLSAWGAAAFAASDAMIGISVFVFPFNDHELAIWWSYAAAQLLITA 239
Query 183 GFFFGREVPDNAAAPTDS 200
G R P P S
Sbjct 240 GLLTRRAPPPRRTLPAAS 257
>gi|300702478|ref|YP_003744078.1| hypothetical protein RCFBP_10113 [Ralstonia solanacearum CFBP2957]
gi|299070139|emb|CBJ41429.1| conserved membrane protein of unknown function [Ralstonia solanacearum
CFBP2957]
Length=257
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/192 (50%), Positives = 119/192 (62%), Gaps = 4/192 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP +K MA+LLA AA H RERRWL+ ALL SA GD LLA+P +FV GL +FLL
Sbjct 64 QPLWKMLMALLLARAASLHETPRERRWLIAALLFSALGDLLLALPGLRVSFVAGLASFLL 123
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
AHLC++ L+ L + S R+ V A+ G+L+W+WP LG +L PV Y++ L
Sbjct 124 AHLCYLRVLVSL--RGEYSALRLLGVGAVLGVGIGMLMWYWPGLG--DLRGPVIAYVIVL 179
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
SAMV ALLARLP A GA FAASD+M+GI F+ + IWWSYAAA++LI A
Sbjct 180 SAMVSAALLARLPGPLAAWGATAFAASDAMVGISVFVFPFSDHELAIWWSYAAAQLLIVA 239
Query 183 GFFFGREVPDNA 194
G R P A
Sbjct 240 GLLTRRAPPRRA 251
>gi|171318781|ref|ZP_02907920.1| YhhN family protein [Burkholderia ambifaria MEX-5]
gi|171096013|gb|EDT40944.1| YhhN family protein [Burkholderia ambifaria MEX-5]
Length=246
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/183 (44%), Positives = 107/183 (59%), Gaps = 4/183 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
Q A KA+M +LL AA RER WL AL + GD LLA+P W +FVFGLGAFLL
Sbjct 58 QAAAKAAMGILLLAAGSTCGAPRERAWLCAALATAVLGDVLLALPDWPLSFVFGLGAFLL 117
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
H+C+ +A P R+ A+VA+ +A+ V F+PHLG +L PV VY++ L
Sbjct 118 THVCYCAIFFRW--RARPHGWRIVALVALWIAAPAFYVAFFPHLG--DLLAPVAVYMLVL 173
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
M AL AR + A+G++ F SD++IG+GRF+ G + IW YA A+ LI A
Sbjct 174 CVMASFALAARTRSALVAIGSLIFVGSDTLIGVGRFLGGFPGIDYLIWALYALAQALIVA 233
Query 183 GFF 185
G F
Sbjct 234 GVF 236
>gi|78061996|ref|YP_371904.1| membrane protein, YhhN-like [Burkholderia sp. 383]
gi|77969881|gb|ABB11260.1| membrane protein, YhhN-like protein [Burkholderia sp. 383]
Length=246
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/184 (43%), Positives = 106/184 (58%), Gaps = 6/184 (3%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
Q A KA+M +LL AA RER WL AL+ + GD LLA+P W +FV GLGAFLL
Sbjct 58 QAAAKAAMGILLLAAGSTCAAPRERAWLCAALVTAVLGDVLLALPDWPLSFVLGLGAFLL 117
Query 63 AHLCFIGALLPLARQAAPSRG-RVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVA 121
H+C+ + R A G R+ A+V + +A+ V F+PHLG+ L PV VY++
Sbjct 118 THVCYCAIFM---RWRARQHGWRIVALVGLWIAAPAFYVAFFPHLGE--LLAPVAVYMLV 172
Query 122 LSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILIT 181
L M AL AR A+G++ F SD++IG+GRF+ G + IW YA A++ I
Sbjct 173 LCVMASFALAARTRGPLVAIGSLIFVGSDTLIGVGRFLGGFPGIDYLIWGLYALAQVTIV 232
Query 182 AGFF 185
AG F
Sbjct 233 AGVF 236
>gi|254254213|ref|ZP_04947530.1| hypothetical protein BDAG_03505 [Burkholderia dolosa AUO158]
gi|124898858|gb|EAY70701.1| hypothetical protein BDAG_03505 [Burkholderia dolosa AUO158]
Length=223
Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/183 (43%), Positives = 104/183 (57%), Gaps = 4/183 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP KA+M +LL AA RERRWL AL + GD LLA+P W +FV GLGAFL+
Sbjct 35 QPVAKAAMGILLLAAGSTCGAPRERRWLCAALATAVLGDVLLALPRWPLSFVGGLGAFLI 94
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
HLC+ L + +A P R+AA+ + A+ F+PHLG+ L PV VY++ L
Sbjct 95 THLCYCA--LFIRWRARPHGVRIAALAVLWTAAPAFYAVFFPHLGE--LRAPVAVYMLVL 150
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
AM AL AR A G++ F SD++IG+ RF+ G + IW YA A++ I A
Sbjct 151 CAMASVALAARTRGPQIAAGSLIFVGSDTLIGVERFLGGFSGIDYLIWGLYALAQVTIVA 210
Query 183 GFF 185
G F
Sbjct 211 GVF 213
>gi|134293879|ref|YP_001117615.1| YhhN family protein [Burkholderia vietnamiensis G4]
gi|134137036|gb|ABO58150.1| YhhN family protein [Burkholderia vietnamiensis G4]
Length=223
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/184 (46%), Positives = 109/184 (60%), Gaps = 6/184 (3%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
QP KA+M +LL AA A P RER WL AL + GD LLA+P W +FV GLGAFLL
Sbjct 35 QPVAKAAMGILLLAAGSACPAPRERAWLCAALATAVLGDVLLALPAWPPSFVLGLGAFLL 94
Query 63 AHLCFIGALLPLARQAAPSRG-RVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVA 121
HLC+ L R A RG RV A +A+ +A+A F+ HLG +L +PV VY++A
Sbjct 95 THLCYCALFL---RWRARPRGWRVGASIALWIAAAACYAAFFAHLG--DLLVPVAVYMLA 149
Query 122 LSAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILIT 181
L M AL AR A+G++ F SD++IG+GRFI + + IW YA A++ I
Sbjct 150 LCTMASLALAARTRGPLVALGSLIFVGSDTLIGVGRFIGVFPGIELLIWGLYALAQLTIV 209
Query 182 AGFF 185
AG F
Sbjct 210 AGVF 213
>gi|115358816|ref|YP_775954.1| YhhN family protein [Burkholderia ambifaria AMMD]
gi|115284104|gb|ABI89620.1| YhhN family protein [Burkholderia ambifaria AMMD]
Length=223
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/161 (46%), Positives = 98/161 (61%), Gaps = 4/161 (2%)
Query 25 RERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLLAHLCFIGALLPLARQAAPSRGR 84
RER WL AL + GD LLA+P W +FVFGLGAFLL H+C+ L +A P R
Sbjct 57 RERAWLCAALATAVLGDVLLALPDWPLSFVFGLGAFLLTHVCYCA--LFFRWRARPHGWR 114
Query 85 VAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVALSAMVCTALLARLPTIWTAVGAV 144
+ A+VA+ +A+ V F+PHLG+ L PV VY++ L M AL AR + AVG++
Sbjct 115 IGALVALWIAAPAFYVAFFPHLGE--LLAPVAVYMLVLCVMASFALAARTRSALVAVGSL 172
Query 145 CFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITAGFF 185
F SD++IG+GRF+ G + IW YA A++LI AG F
Sbjct 173 IFVGSDTLIGVGRFLGGFPGIDYLIWGLYALAQVLIVAGVF 213
>gi|172063546|ref|YP_001811197.1| YhhN family protein [Burkholderia ambifaria MC40-6]
gi|171996063|gb|ACB66981.1| YhhN family protein [Burkholderia ambifaria MC40-6]
Length=223
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/161 (45%), Positives = 97/161 (61%), Gaps = 4/161 (2%)
Query 25 RERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLLAHLCFIGALLPLARQAAPSRGR 84
RER WL AL + GD LLA+P W +FVFGLGAFLL H+C+ +A P R
Sbjct 57 RERAWLCAALATAVLGDVLLALPDWPLSFVFGLGAFLLTHVCYCAIFFRW--RARPHGWR 114
Query 85 VAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVALSAMVCTALLARLPTIWTAVGAV 144
+ A+VA+ +A+ V F+PHLG+ L PV VY++ L M AL AR + A+G++
Sbjct 115 IVALVALWIAAPAFYVAFFPHLGE--LLAPVAVYMLVLCVMASFALAARTRSALVAIGSL 172
Query 145 CFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITAGFF 185
F SD++IG+GRF+ G + IW YA A++LI AG F
Sbjct 173 IFVGSDTLIGVGRFLGGFPGIDYLIWGLYALAQVLIVAGVF 213
>gi|206563662|ref|YP_002234425.1| hypothetical protein BCAM1813 [Burkholderia cenocepacia J2315]
gi|198039702|emb|CAR55672.1| putative membrane protein [Burkholderia cenocepacia J2315]
Length=246
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/183 (43%), Positives = 104/183 (57%), Gaps = 4/183 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
Q A KA+M +LL A RER WL AL + GD LLA+P W W+FV GLGAFLL
Sbjct 58 QAAAKAAMGILLLTAGSTCGAPRERAWLCAALATAVLGDVLLALPDWPWSFVLGLGAFLL 117
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
H+C+ +A P R+ A+V + +A+ F+PHLG+ L PV VY++ L
Sbjct 118 THVCYCAIFFRW--RARPHGWRIVALVGLWIAAPAFYAAFFPHLGE--LLAPVAVYMLVL 173
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
AM AL AR A+G++ F SD++IG+GRF+ G + IW YA A++ I A
Sbjct 174 CAMASFALAARTRGPLVAIGSLIFVGSDTLIGVGRFLGGFPGIDYLIWGLYALAQVTIVA 233
Query 183 GFF 185
G F
Sbjct 234 GVF 236
>gi|107026049|ref|YP_623560.1| YhhN-like [Burkholderia cenocepacia AU 1054]
gi|116692767|ref|YP_838300.1| YhhN family protein [Burkholderia cenocepacia HI2424]
gi|105895423|gb|ABF78587.1| YhhN-like protein [Burkholderia cenocepacia AU 1054]
gi|116650767|gb|ABK11407.1| YhhN family protein [Burkholderia cenocepacia HI2424]
Length=246
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/183 (43%), Positives = 103/183 (57%), Gaps = 4/183 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
Q A KA+M +LL AA RER WL AL + GD LLA+P W +FV GLGAFLL
Sbjct 58 QAAAKAAMGILLLAAGSTCGAPRERAWLCAALATAVLGDVLLALPDWPLSFVLGLGAFLL 117
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
HLC+ +A P R+ A+V + +A+ F+PHLG+ L PV VY++ L
Sbjct 118 THLCYCAIFFRW--RARPHGWRIVALVGLWIAAPAFYAAFFPHLGE--LLAPVAVYMLVL 173
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
M AL AR AVG++ F SD++IG+GRF+ G + IW YA A++ I A
Sbjct 174 CVMASFALAARTRGPLVAVGSLIFVGSDTLIGVGRFLDGFPGIDYLIWGLYALAQVTIVA 233
Query 183 GFF 185
G F
Sbjct 234 GVF 236
>gi|254248141|ref|ZP_04941461.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|124874642|gb|EAY64632.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
Length=223
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/183 (43%), Positives = 103/183 (57%), Gaps = 4/183 (2%)
Query 3 QPAFKASMAVLLAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLL 62
Q A KA+M +LL AA RER WL AL + GD LLA+P W +FV GLGAFLL
Sbjct 35 QAAAKAAMGILLLAAGSTCGAPRERAWLCAALATAVLGDVLLALPDWPLSFVLGLGAFLL 94
Query 63 AHLCFIGALLPLARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVAL 122
HLC+ +A P R+ A+V + +A+ F+PHLG+ L PV VY++ L
Sbjct 95 THLCYCAIFFRW--RARPHGWRIVALVGLWIAAPAFYAAFFPHLGE--LLAPVAVYMLVL 150
Query 123 SAMVCTALLARLPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITA 182
M AL AR AVG++ F SD++IG+GRF+ G + IW YA A++ I A
Sbjct 151 CVMASFALAARTRGPLVAVGSLIFVGSDTLIGVGRFLGGFPGIDYLIWGLYALAQVTIVA 210
Query 183 GFF 185
G F
Sbjct 211 GVF 213
>gi|325520713|gb|EGC99747.1| YhhN-like membrane protein [Burkholderia sp. TJI49]
Length=188
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/172 (45%), Positives = 103/172 (60%), Gaps = 6/172 (3%)
Query 14 LAAAAVAHPIGRERRWLVPALLLSATGDWLLAIPWWTWAFVFGLGAFLLAHLCFIGALLP 73
+A +A A P RER WL AL + GD LLA+P W +FV GLGAFLL HLC+ L
Sbjct 1 VAGSACAAP--RERGWLCAALATAVLGDVLLALPDWPLSFVGGLGAFLLTHLCYCAIFLR 58
Query 74 LARQAAPSRGRVAAVVAMCVASAGLLVWFWPHLGKDNLTIPVTVYIVALSAMVCTALLAR 133
+A P RVAA++A+ +A+ G F+PHLG+ L PV VY++ L AM AL AR
Sbjct 59 W--RARPHGWRVAALIALWIAAPGFYAAFFPHLGE--LAAPVAVYMLVLCAMASLALAAR 114
Query 134 LPTIWTAVGAVCFAASDSMIGIGRFILGNEALAVPIWWSYAAAEILITAGFF 185
A+G++ F SD++IG+GRF+ G + IW YA A++ I AG F
Sbjct 115 THGPLVALGSLIFVGSDTLIGVGRFLGGFPGIDYLIWGLYALAQVTIVAGVF 166
Lambda K H
0.329 0.138 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 218250040016
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40