BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1402 Length=655 Score E Sequences producing significant alignments: (Bits) Value gi|339294380|gb|AEJ46491.1| primosomal protein N priA (replicati... 1256 0.0 gi|15608540|ref|NP_215918.1| primosome assembly protein PriA [My... 1255 0.0 gi|254231645|ref|ZP_04924972.1| primosomal protein N priA (repli... 1254 0.0 gi|289569419|ref|ZP_06449646.1| primosomal protein N priA [Mycob... 1252 0.0 gi|289574071|ref|ZP_06454298.1| primosomal protein N priA [Mycob... 1251 0.0 gi|15840860|ref|NP_335897.1| primosome assembly protein PriA [My... 1216 0.0 gi|183982224|ref|YP_001850515.1| primosomal protein N' PriA [Myc... 1031 0.0 gi|118617412|ref|YP_905744.1| primosome assembly protein PriA [M... 1028 0.0 gi|342858680|ref|ZP_08715335.1| primosome assembly protein PriA ... 1026 0.0 gi|41407228|ref|NP_960064.1| primosome assembly protein PriA [My... 1021 0.0 gi|336461625|gb|EGO40490.1| primosomal protein N' (replication f... 1020 0.0 gi|118465545|ref|YP_882557.1| primosome assembly protein PriA [M... 1019 0.0 gi|308375451|ref|ZP_07443969.2| hypothetical protein TMGG_01973 ... 955 0.0 gi|15827201|ref|NP_301464.1| primosome assembly protein PriA [My... 948 0.0 gi|315444647|ref|YP_004077526.1| replication restart DNA helicas... 889 0.0 gi|145224315|ref|YP_001134993.1| primosome assembly protein PriA... 888 0.0 gi|120403668|ref|YP_953497.1| primosome assembly protein PriA [M... 879 0.0 gi|108799347|ref|YP_639544.1| primosome assembly protein PriA [M... 876 0.0 gi|333990937|ref|YP_004523551.1| primosomal protein N' PriA [Myc... 874 0.0 gi|118473637|ref|YP_887377.1| primosome assembly protein PriA [M... 832 0.0 gi|289442847|ref|ZP_06432591.1| primosomal protein N priA [Mycob... 819 0.0 gi|296170735|ref|ZP_06852308.1| DNA replication factor Y [Mycoba... 813 0.0 gi|240172777|ref|ZP_04751436.1| primosome assembly protein PriA ... 798 0.0 gi|169629897|ref|YP_001703546.1| primosome assembly protein PriA... 796 0.0 gi|325672540|ref|ZP_08152236.1| primosome assembly protein PriA ... 728 0.0 gi|289749960|ref|ZP_06509338.1| primosomal protein N priA [Mycob... 723 0.0 gi|312139576|ref|YP_004006912.1| primosomal protein n' pria [Rho... 716 0.0 gi|226366349|ref|YP_002784132.1| primosome assembly protein PriA... 702 0.0 gi|111024109|ref|YP_707081.1| primosome assembly protein PriA [R... 698 0.0 gi|226306499|ref|YP_002766459.1| primosomal protein n' [Rhodococ... 689 0.0 gi|229493563|ref|ZP_04387348.1| primosomal protein N [Rhodococcu... 685 0.0 gi|343924559|ref|ZP_08764107.1| primosomal protein n' [Gordonia ... 672 0.0 gi|262202276|ref|YP_003273484.1| primosomal protein N' (replicat... 660 0.0 gi|333919533|ref|YP_004493114.1| DNA replication factor Y [Amyco... 647 0.0 gi|289753483|ref|ZP_06512861.1| primosome assembly protein PriA ... 632 9e-179 gi|54025582|ref|YP_119824.1| primosome assembly protein PriA [No... 628 9e-178 gi|326382168|ref|ZP_08203860.1| primosome assembly protein PriA ... 625 6e-177 gi|308276495|gb|ADO26394.1| ATP-dependent helicase priA [Coryneb... 606 4e-171 gi|300858541|ref|YP_003783524.1| primosomal protein N' [Coryneba... 606 4e-171 gi|145295723|ref|YP_001138544.1| primosome assembly protein PriA... 604 1e-170 gi|344044951|gb|EGV40625.1| primosome assembly protein PriA [Cor... 603 4e-170 gi|19552814|ref|NP_600816.1| primosome assembly protein PriA [Co... 603 4e-170 gi|334696959|gb|AEG81756.1| primosomal protein N' [Corynebacteri... 602 6e-170 gi|289446998|ref|ZP_06436742.1| primosome assembly protein PriA ... 599 6e-169 gi|337290845|ref|YP_004629866.1| primosomal protein N' [Coryneba... 599 6e-169 gi|25028278|ref|NP_738332.1| primosome assembly protein PriA [Co... 591 1e-166 gi|296140273|ref|YP_003647516.1| primosomal protein N' [Tsukamur... 590 4e-166 gi|302525876|ref|ZP_07278218.1| primosomal protein N [Streptomyc... 587 2e-165 gi|298256330|gb|ADI71439.1| putative primosomal protein N' [Amyc... 586 4e-165 gi|300781119|ref|ZP_07090973.1| DNA replication factor Y [Coryne... 581 2e-163 >gi|339294380|gb|AEJ46491.1| primosomal protein N priA (replication factor Y) [Mycobacterium tuberculosis CCDC5079] Length=679 Score = 1256 bits (3251), Expect = 0.0, Method: Compositional matrix adjust. Identities = 655/655 (100%), Positives = 655/655 (100%), Gaps = 0/655 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR Sbjct 25 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 84 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP Sbjct 85 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 144 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR Sbjct 145 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 204 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG Sbjct 205 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 264 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV Sbjct 265 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 324 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR Sbjct 325 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 384 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV Sbjct 385 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 444 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS Sbjct 445 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 504 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA Sbjct 505 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 564 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG Sbjct 565 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 624 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG Sbjct 625 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 679 >gi|15608540|ref|NP_215918.1| primosome assembly protein PriA [Mycobacterium tuberculosis H37Rv] gi|31792596|ref|NP_855089.1| primosome assembly protein PriA [Mycobacterium bovis AF2122/97] gi|121637332|ref|YP_977555.1| primosome assembly protein PriA [Mycobacterium bovis BCG str. Pasteur 1173P2] 32 more sequence titles Length=655 Score = 1255 bits (3248), Expect = 0.0, Method: Compositional matrix adjust. Identities = 655/655 (100%), Positives = 655/655 (100%), Gaps = 0/655 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR Sbjct 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP Sbjct 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR Sbjct 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG Sbjct 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV Sbjct 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR Sbjct 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV Sbjct 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS Sbjct 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA Sbjct 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG Sbjct 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG Sbjct 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 >gi|254231645|ref|ZP_04924972.1| primosomal protein N priA (replication factor Y) [Mycobacterium tuberculosis C] gi|308231831|ref|ZP_07413922.2| primosomal protein N priA [Mycobacterium tuberculosis SUMu001] gi|308369790|ref|ZP_07419070.2| primosomal protein N priA [Mycobacterium tuberculosis SUMu002] 17 more sequence titles Length=658 Score = 1254 bits (3244), Expect = 0.0, Method: Compositional matrix adjust. Identities = 655/655 (100%), Positives = 655/655 (100%), Gaps = 0/655 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR Sbjct 4 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 63 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP Sbjct 64 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 123 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR Sbjct 124 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 183 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG Sbjct 184 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 243 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV Sbjct 244 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 303 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR Sbjct 304 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 363 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV Sbjct 364 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 423 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS Sbjct 424 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 483 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA Sbjct 484 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 543 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG Sbjct 544 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 603 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG Sbjct 604 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 658 >gi|289569419|ref|ZP_06449646.1| primosomal protein N priA [Mycobacterium tuberculosis T17] gi|289543173|gb|EFD46821.1| primosomal protein N priA [Mycobacterium tuberculosis T17] Length=655 Score = 1252 bits (3239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 654/655 (99%), Positives = 654/655 (99%), Gaps = 0/655 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR Sbjct 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP Sbjct 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR Sbjct 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG Sbjct 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV Sbjct 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR Sbjct 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPT RCVRCGSDVVRAVV Sbjct 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTRRCVRCGSDVVRAVV 420 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS Sbjct 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA Sbjct 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG Sbjct 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG Sbjct 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 >gi|289574071|ref|ZP_06454298.1| primosomal protein N priA [Mycobacterium tuberculosis K85] gi|289538502|gb|EFD43080.1| primosomal protein N priA [Mycobacterium tuberculosis K85] Length=655 Score = 1251 bits (3237), Expect = 0.0, Method: Compositional matrix adjust. Identities = 654/655 (99%), Positives = 654/655 (99%), Gaps = 0/655 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR Sbjct 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP Sbjct 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR Sbjct 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG Sbjct 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV Sbjct 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR Sbjct 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GYIPSLACGRC AIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV Sbjct 361 GYIPSLACGRCWAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS Sbjct 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA Sbjct 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG Sbjct 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG Sbjct 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 >gi|15840860|ref|NP_335897.1| primosome assembly protein PriA [Mycobacterium tuberculosis CDC1551] gi|13881059|gb|AAK45711.1| primosomal protein N' [Mycobacterium tuberculosis CDC1551] Length=654 Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 649/655 (99%), Positives = 649/655 (99%), Gaps = 1/655 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR Sbjct 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP Sbjct 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR Sbjct 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG Sbjct 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV Sbjct 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPS R SALQSGAPVLVQVPRR Sbjct 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSYRWRRG-SALQSGAPVLVQVPRR 359 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV Sbjct 360 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 419 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS Sbjct 420 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 479 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA Sbjct 480 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 539 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG Sbjct 540 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 599 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG Sbjct 600 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 654 >gi|183982224|ref|YP_001850515.1| primosomal protein N' PriA [Mycobacterium marinum M] gi|183175550|gb|ACC40660.1| primosomal protein N' PriA [Mycobacterium marinum M] Length=648 Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/655 (84%), Positives = 579/655 (89%), Gaps = 7/655 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDR+FDYLV AE SDDAQPGVRVRVRFHGRLVDGFVLERR+D+DH GKLGWLDR Sbjct 1 MLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFVLERRNDTDHQGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVS E VLT EIRRLVDAVAARYAGTR DVLRLAVPARHARVERE+ T P P VAPVD Sbjct 61 VVSAEQVLTPEIRRLVDAVAARYAGTRPDVLRLAVPARHARVEREVATRPDLPEVAPVDG 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 +GWA YGRG QFL AL ++RAARAVWQALPGE WADRFAEAAAQTVRAGR VLAIVPDQR Sbjct 121 AGWAGYGRGGQFLDALGEARAARAVWQALPGEPWADRFAEAAAQTVRAGRAVLAIVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD LW+AAT +DE SV ALSAGLGP ARYRRWLAALRG ARLVIGTRSAVFAPLS+LG Sbjct 181 DLDELWRAATTRIDERSVAALSAGLGPAARYRRWLAALRGGARLVIGTRSAVFAPLSDLG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWAD DD+LAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHD+ Sbjct 241 LVMVWADGDDTLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDI 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VRAR+PRV+ALDDSGY D RDPAARTARLPSIAL AARS+LQ+GAPVLVQVPRR Sbjct 301 VAARQVVRARTPRVIALDDSGYADERDPAARTARLPSIALHAARSSLQAGAPVLVQVPRR 360 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+PSLACGRCRAIARCR CTGPLSL G+PGAVCRWCG +P LRC RCGSD VRAVV Sbjct 361 GYVPSLACGRCRAIARCRHCTGPLSLPERGAPGAVCRWCGHGEPLLRCTRCGSDTVRAVV 420 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGT+VITSAGD +VP +DA PALVVATPGAEPRA GGYGAALLLD+ Sbjct 421 VGARRTAEELGRAFPGTSVITSAGDAIVPDVDARPALVVATPGAEPRAAGGYGAALLLDT 480 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAE+AL RWM AAALVR R GGVV VVAESSIPTVQSLIRWDPVGHAEA Sbjct 481 WALLGRQDLRAAEEALCRWMAAAALVRSRADGGVVAVVAESSIPTVQSLIRWDPVGHAEA 540 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 EL AR+EVGLPPSVHIAA+DG A V ALL+ ARLP+ AD+LGPVDLPPGVRRPAG Sbjct 541 ELEARSEVGLPPSVHIAAIDGTAEAVLALLDQARLPE----DADMLGPVDLPPGVRRPAG 596 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 P PV RML+RV REQGLELA LRRG+GVLSARQT + VRVQIDPLHIG Sbjct 597 TPDGVPVTRMLVRVRREQGLELAGCLRRGVGVLSARQTHEP---VRVQIDPLHIG 648 >gi|118617412|ref|YP_905744.1| primosome assembly protein PriA [Mycobacterium ulcerans Agy99] gi|118569522|gb|ABL04273.1| primosomal protein N' PriA [Mycobacterium ulcerans Agy99] Length=648 Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/655 (84%), Positives = 577/655 (89%), Gaps = 7/655 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDR+FDYLV AE SDDAQPGVRVRVRFHGRLVDGFVLERR+D+DH GKLGWLDR Sbjct 1 MLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFVLERRNDTDHQGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVS E VLT EIRRLVDAVAARYAGTR DVLRLAVPARHARVERE+ T P P VAPVD Sbjct 61 VVSAEQVLTPEIRRLVDAVAARYAGTRPDVLRLAVPARHARVEREVATRPDLPEVAPVDG 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 +GWA YGRG QFL AL ++RAARAVWQALPGE WADRFAEAAAQTVR GR VLAIVPDQR Sbjct 121 AGWAGYGRGGQFLDALGEARAARAVWQALPGEPWADRFAEAAAQTVRTGRAVLAIVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD LW+AAT +DE SV ALSAGLGP ARYRRWLAALRG ARLVIGTRSAVFAPLS+LG Sbjct 181 DLDELWRAATTRIDERSVAALSAGLGPAARYRRWLAALRGGARLVIGTRSAVFAPLSDLG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWAD DD+LAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHD+ Sbjct 241 LVMVWADGDDTLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDI 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VRAR+PRV+ALDDSGY D RDPAARTARLPSIAL AARS+LQ+GAPVLVQVPRR Sbjct 301 VAARQVVRARTPRVIALDDSGYADERDPAARTARLPSIALHAARSSLQAGAPVLVQVPRR 360 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+PSLACGRCRAIARCR CTGPLSL G+PGAVCRWCG +P LRC RCGSD VRAVV Sbjct 361 GYVPSLACGRCRAIARCRHCTGPLSLPERGAPGAVCRWCGHGEPLLRCTRCGSDTVRAVV 420 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGT+VITSAGD +VP +DA PALVVATPGAEPRA GGYGAALLLD+ Sbjct 421 VGARRTAEELGRAFPGTSVITSAGDAIVPDVDARPALVVATPGAEPRAAGGYGAALLLDT 480 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAE+AL RWM AAALVR R GGVV VVAESSIPTVQSLIRWDPVGHA+A Sbjct 481 WALLGRQDLRAAEEALCRWMAAAALVRSRADGGVVAVVAESSIPTVQSLIRWDPVGHADA 540 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 EL AR+EVGLPPSVHIAA+DG A V ALL+ ARLP+ AD+LGPVDLPPGVRRPAG Sbjct 541 ELEARSEVGLPPSVHIAAIDGTAEAVLALLDQARLPE----DADMLGPVDLPPGVRRPAG 596 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 P PV RML+RV REQGLELA LRRG+GVL ARQT + VRVQIDPLHIG Sbjct 597 TPDGVPVTRMLVRVRREQGLELAGCLRRGVGVLGARQTHEP---VRVQIDPLHIG 648 >gi|342858680|ref|ZP_08715335.1| primosome assembly protein PriA [Mycobacterium colombiense CECT 3035] gi|342134384|gb|EGT87564.1| primosome assembly protein PriA [Mycobacterium colombiense CECT 3035] Length=670 Score = 1026 bits (2654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 548/655 (84%), Positives = 580/655 (89%), Gaps = 4/655 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDR+FDYLV AE SDDAQPGVRVRVRFHGRLVDGFVLERR+D+DH GKLGWLDR Sbjct 20 MLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFVLERRNDTDHPGKLGWLDR 79 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVS EPVLT EIRRLVDAVAA YAGTR DVLRLAVPARHARVERE + V PVDP Sbjct 80 VVSAEPVLTPEIRRLVDAVAAHYAGTRPDVLRLAVPARHARVEREALVSRDPVVPDPVDP 139 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 S W YGRG QFLAALA+SRAARAVWQALPGE W DRFAEAAA TVR GR+VLAIVPDQR Sbjct 140 SAWDGYGRGAQFLAALAESRAARAVWQALPGESWTDRFAEAAAHTVRTGRSVLAIVPDQR 199 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD LWQAATA +DE SVVALSAGLGP ARYRRWLAALRG+ARLVIGTRSAVFAPLS+LG Sbjct 200 DLDALWQAATARIDEGSVVALSAGLGPAARYRRWLAALRGTARLVIGTRSAVFAPLSDLG 259 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEA ALVRSGWAHD+ Sbjct 260 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAQALVRSGWAHDI 319 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA RP VRAR+PRV+ALDD+GY D RDPAARTAR+PSIALRAARSALQ+GAPVLVQVPRR Sbjct 320 VAARPVVRARTPRVIALDDTGYADERDPAARTARIPSIALRAARSALQAGAPVLVQVPRR 379 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+PSLAC RCR IARCR CTGPLSLQ G+ +CRWCGRVDPT RCVRCGSD VRAVV Sbjct 380 GYVPSLACARCRTIARCRHCTGPLSLQEGGA-ALLCRWCGRVDPTRRCVRCGSDAVRAVV 438 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGTAVITS+GD +VP++ AGPALVVATPG EPRA GGYGAALLLD+ Sbjct 439 VGARRTAEELGRAFPGTAVITSSGDGVVPEVAAGPALVVATPGVEPRASGGYGAALLLDT 498 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAEDALWRWMTAAALVR RG GGVV VVAESS+PTVQSLIRWDPVGHAEA Sbjct 499 WALLGRQDLRAAEDALWRWMTAAALVRARGDGGVVMVVAESSLPTVQSLIRWDPVGHAEA 558 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 E+ AR EVGLPPSVH+AA+DG AG VTALLEAARL D + ADLLGPVDLP GVRRPAG Sbjct 559 EVIARAEVGLPPSVHMAAVDGTAGAVTALLEAARLSDQESFDADLLGPVDLPAGVRRPAG 618 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 P APV RML+RV R QGL LA +LRRG+ VLSARQT + RVQIDPLHIG Sbjct 619 TPPGAPVTRMLVRVPRRQGLALAGALRRGVAVLSARQTHEP---ARVQIDPLHIG 670 >gi|41407228|ref|NP_960064.1| primosome assembly protein PriA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395579|gb|AAS03447.1| PriA [Mycobacterium avium subsp. paratuberculosis K-10] Length=655 Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/658 (83%), Positives = 572/658 (87%), Gaps = 6/658 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDR+FDYLV AE SDDAQPGVRVRVRFHGRLVDGF+LERR D+DH GKLGWLDR Sbjct 1 MLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFLLERRHDTDHQGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLT EIRRLVDAVAARYAGTR DVLRLAVPARHARVERE A G P+ APVDP Sbjct 61 VVSPEPVLTAEIRRLVDAVAARYAGTRPDVLRLAVPARHARVEREARAAAGIPMPAPVDP 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGW YGRG QFLAALA+SRAARAVWQALPGE W DRFAEAAAQTVR GR+VLAIVPDQR Sbjct 121 SGWDGYGRGAQFLAALAESRAARAVWQALPGEPWTDRFAEAAAQTVRTGRSVLAIVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD L A T+ +D VVALSAGLGP ARYRRWLAALRGSAR+VIGTRSAVFAPLS+LG Sbjct 181 DLDALSHAVTSRIDATGVVALSAGLGPAARYRRWLAALRGSARVVIGTRSAVFAPLSDLG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEA ALVRSGWAHD+ Sbjct 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAQALVRSGWAHDI 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA RP VRAR+PRV+ALDD+GY D RDPAARTAR+PS+ALRAARSALQ GAPVLVQVPRR Sbjct 301 VAARPVVRARTPRVIALDDTGYADERDPAARTARIPSVALRAARSALQDGAPVLVQVPRR 360 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQ---GAGSPGAVCRWCGRVDPTLRCVRCGSDVVR 417 GY+PSLAC RCR IARCR CTGPLSL G G G VCRWCGRVDPT RC RCGSD VR Sbjct 361 GYVPSLACARCRTIARCRHCTGPLSLAESPGEGGGGLVCRWCGRVDPTRRCARCGSDAVR 420 Query 418 AVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALL 477 AVVVGARRTAEELGRAF GT VITS+GD +VP++ GPALVVATPGAEPRA G YGAALL Sbjct 421 AVVVGARRTAEELGRAFAGTTVITSSGDAVVPEVADGPALVVATPGAEPRARGDYGAALL 480 Query 478 LDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGH 537 LD+WALLGRQDLRAAEDALWRWMTAAALVRPRG GGVV VVAESS+PTVQSLIRWDPVGH Sbjct 481 LDTWALLGRQDLRAAEDALWRWMTAAALVRPRGDGGVVMVVAESSLPTVQSLIRWDPVGH 540 Query 538 AEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRR 597 AE+EL AR EVGLPPSVH+AA+DG V ALL+ A L L ADLLGPVDLPPG RR Sbjct 541 AESELTARAEVGLPPSVHMAAVDGTPAAVNALLDEAGLTGGQTLHADLLGPVDLPPGARR 600 Query 598 PAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 PAG P APV RML+RV R GL LAA+LRRG+GVLSARQT + RVQIDPLHIG Sbjct 601 PAGTPPGAPVTRMLVRVPRRDGLALAAALRRGVGVLSARQTHEP---ARVQIDPLHIG 655 >gi|336461625|gb|EGO40490.1| primosomal protein N' (replication factor Y) - superfamily II helicase [Mycobacterium avium subsp. paratuberculosis S397] Length=674 Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/658 (83%), Positives = 572/658 (87%), Gaps = 6/658 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDR+FDYLV AE SDDAQPGVRVRVRFHGRLVDGF+LERR D+DH GKLGWLDR Sbjct 20 MLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFLLERRHDTDHQGKLGWLDR 79 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLT EIRRLVDAVAARYAGTR DVLRLAVPARHARVERE A G P+ APVDP Sbjct 80 VVSPEPVLTAEIRRLVDAVAARYAGTRPDVLRLAVPARHARVEREARAAAGIPMPAPVDP 139 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGW YGRG QFLAALA+SRAARAVWQALPGE W DRFAEAAAQTVR GR+VLAIVPDQR Sbjct 140 SGWDGYGRGAQFLAALAESRAARAVWQALPGEPWTDRFAEAAAQTVRTGRSVLAIVPDQR 199 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD L A T+ +D VVALSAGLGP ARYRRWLAALRGSAR+VIGTRSAVFAPLS+LG Sbjct 200 DLDALSHAVTSRIDATGVVALSAGLGPAARYRRWLAALRGSARVVIGTRSAVFAPLSDLG 259 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEA ALVRSGWAHD+ Sbjct 260 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAQALVRSGWAHDI 319 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA RP VRAR+PRV+ALDD+GY D RDPAARTAR+PS+ALRAARSALQ GAPVLVQVPRR Sbjct 320 VAARPVVRARTPRVIALDDTGYADERDPAARTARIPSVALRAARSALQDGAPVLVQVPRR 379 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQ---GAGSPGAVCRWCGRVDPTLRCVRCGSDVVR 417 GY+PSLAC RCR IARCR CTGPLSL G G G VCRWCGRVDPT RC RCGSD VR Sbjct 380 GYVPSLACARCRTIARCRHCTGPLSLAESPGEGGGGLVCRWCGRVDPTRRCARCGSDAVR 439 Query 418 AVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALL 477 AVVVGARRTAEELGRAF GT VITS+GD +VP++ GPALVVATPGAEPRA G YGAALL Sbjct 440 AVVVGARRTAEELGRAFAGTTVITSSGDAVVPEVADGPALVVATPGAEPRARGDYGAALL 499 Query 478 LDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGH 537 LD+WALLGRQDLRAAEDALWRWMTAAALVRPRG GGVV VVAESS+PTVQSLIRWDPVGH Sbjct 500 LDTWALLGRQDLRAAEDALWRWMTAAALVRPRGDGGVVMVVAESSLPTVQSLIRWDPVGH 559 Query 538 AEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRR 597 AE+EL AR EVGLPPSVH+AA+DG V ALL+ A L L ADLLGPVDLPPG RR Sbjct 560 AESELTARAEVGLPPSVHMAAVDGTPAAVNALLDEAGLTGGQTLHADLLGPVDLPPGARR 619 Query 598 PAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 PAG P APV RML+RV R GL LAA+LRRG+GVLSARQT + RVQIDPLHIG Sbjct 620 PAGTPPGAPVTRMLVRVPRRDGLALAAALRRGVGVLSARQTHEP---ARVQIDPLHIG 674 >gi|118465545|ref|YP_882557.1| primosome assembly protein PriA [Mycobacterium avium 104] gi|118166832|gb|ABK67729.1| primosomal protein N' [Mycobacterium avium 104] Length=674 Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/658 (83%), Positives = 572/658 (87%), Gaps = 6/658 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDR+FDYLV AE SDDAQPGVRVRVRFHGRLVDGF+LERR D+DH GKLGWLDR Sbjct 20 MLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFLLERRHDTDHQGKLGWLDR 79 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLT EIRRLVDAVAARYAGTR DVLRLAVPARHARVERE A G P+ APVDP Sbjct 80 VVSPEPVLTAEIRRLVDAVAARYAGTRPDVLRLAVPARHARVEREARAAAGIPMPAPVDP 139 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGW YGRG QFLAALA+SRAARAVWQALPGE W DRFAEAAAQTVRAGR+VLAIVPDQR Sbjct 140 SGWEGYGRGAQFLAALAESRAARAVWQALPGEPWTDRFAEAAAQTVRAGRSVLAIVPDQR 199 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD L A T +D VVALSAGLGP ARYRRWLAALRGSAR+VIGTRSAVFAPLS+LG Sbjct 200 DLDALSHAVTTRIDAAGVVALSAGLGPAARYRRWLAALRGSARVVIGTRSAVFAPLSDLG 259 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEA ALVRSGWAHD+ Sbjct 260 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAQALVRSGWAHDI 319 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA RP VRAR+PRV+ALDD+GY D RDPAARTAR+PS+ALRAARSALQ GAPVLVQVPRR Sbjct 320 VAARPVVRARTPRVIALDDTGYADERDPAARTARIPSVALRAARSALQHGAPVLVQVPRR 379 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQ---GAGSPGAVCRWCGRVDPTLRCVRCGSDVVR 417 GY+PSLAC RCR IARCR CTGPLSL G G G VCRWCGRVDPT RC RCGSD VR Sbjct 380 GYVPSLACARCRTIARCRHCTGPLSLAESPGEGGGGLVCRWCGRVDPTRRCARCGSDAVR 439 Query 418 AVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALL 477 AVVVGARRTAEELGRAF GT VITS+GD +VP++ GPALVVATPGAEPRA G YGAALL Sbjct 440 AVVVGARRTAEELGRAFAGTTVITSSGDAVVPEVADGPALVVATPGAEPRARGDYGAALL 499 Query 478 LDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGH 537 LD+WALLGRQDLRAAEDALWRWMTAAALVRPRG GGVV VVAE+S+PTVQSLIRWDPVGH Sbjct 500 LDTWALLGRQDLRAAEDALWRWMTAAALVRPRGDGGVVMVVAETSLPTVQSLIRWDPVGH 559 Query 538 AEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRR 597 AE+EL AR EVGLPPSVH+AA+DG V ALL+ A L L ADLLGPVDLPPG RR Sbjct 560 AESELTARAEVGLPPSVHMAAVDGTPAAVNALLDEAGLTGGQTLHADLLGPVDLPPGARR 619 Query 598 PAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 PAG P APV RML+RV R GL LAA+LRRG+GVLSARQT + RVQIDPLHIG Sbjct 620 PAGTPPGAPVTRMLVRVPRRDGLALAAALRRGVGVLSARQTHEP---ARVQIDPLHIG 674 >gi|308375451|ref|ZP_07443969.2| hypothetical protein TMGG_01973 [Mycobacterium tuberculosis SUMu007] gi|308346286|gb|EFP35137.1| hypothetical protein TMGG_01973 [Mycobacterium tuberculosis SUMu007] Length=496 Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/496 (100%), Positives = 496/496 (100%), Gaps = 0/496 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR Sbjct 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP Sbjct 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR Sbjct 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG Sbjct 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV Sbjct 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR Sbjct 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV Sbjct 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS Sbjct 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 Query 481 WALLGRQDLRAAEDAL 496 WALLGRQDLRAAEDAL Sbjct 481 WALLGRQDLRAAEDAL 496 >gi|15827201|ref|NP_301464.1| primosome assembly protein PriA [Mycobacterium leprae TN] gi|221229679|ref|YP_002503095.1| primosome assembly protein PriA [Mycobacterium leprae Br4923] gi|15214190|sp|Q9CCQ3.1|PRIA_MYCLE RecName: Full=Putative primosomal protein N'; AltName: Full=ATP-dependent helicase priA; AltName: Full=Replication factor Y gi|13092749|emb|CAC30056.1| putative primosomal protein N' [Mycobacterium leprae] gi|219932786|emb|CAR70641.1| putative primosomal protein N' [Mycobacterium leprae Br4923] Length=651 Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 531/658 (81%), Positives = 568/658 (87%), Gaps = 10/658 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDR+FDYLV AE SDDAQPGVRVRVRFHGRLVDGFVLERR+D++H GKLGWLDR Sbjct 1 MLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFVLERRNDTEHFGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRP---VVAP 117 VVS +PVLT E+RRLVDAV ARYAGTR DVLRLAVP RHARVERE P P + P Sbjct 61 VVSAQPVLTAEVRRLVDAVVARYAGTRPDVLRLAVPTRHARVERETLAIPVSPLPLIPGP 120 Query 118 VDPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVP 177 VDPSGW YGRG QFL ALA+SRAARAVWQALPGE WADRFAEAAAQ +RAGR LAIVP Sbjct 121 VDPSGWEVYGRGGQFLTALAESRAARAVWQALPGEQWADRFAEAAAQAIRAGRAALAIVP 180 Query 178 DQRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLS 237 DQRDLD LW+A T VDE SVVALSAGLG RY+RWL LRGSARLVIGTRSAVFAP++ Sbjct 181 DQRDLDVLWRAVTTRVDERSVVALSAGLGQAVRYQRWLKVLRGSARLVIGTRSAVFAPVN 240 Query 238 ELGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWA 297 +LGLVMVW+DADD LAEPRAPYPHAREVAMLRA+QARCAALIGGY RTAEAHALVRSGWA Sbjct 241 DLGLVMVWSDADDMLAEPRAPYPHAREVAMLRAYQARCAALIGGYTRTAEAHALVRSGWA 300 Query 298 HDVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQV 357 HDVVA R VRAR+PRVVALDDSGY + DPAARTARLPSIALRAARSAL +GAPVLVQV Sbjct 301 HDVVAARSVVRARAPRVVALDDSGYAEESDPAARTARLPSIALRAARSALAAGAPVLVQV 360 Query 358 PRRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVR 417 PRRGY+PSLACGRCR +ARCR CTGPLSL +PG VC WCGR D TLRC RCGS+VVR Sbjct 361 PRRGYVPSLACGRCRTLARCRHCTGPLSLLDRATPGTVCCWCGRADLTLRCARCGSEVVR 420 Query 418 AVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALL 477 AVVVGARRTAEELGRAF G VITS GDT+VP++ A PALVVATPGAEPRAPGGYGAALL Sbjct 421 AVVVGARRTAEELGRAFAGMPVITSVGDTIVPEVGARPALVVATPGAEPRAPGGYGAALL 480 Query 478 LDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGH 537 LD+WALLGRQDLRAAE+ALWRWMTAAALVR RG GGVV VVAE+SIPTVQSL+RWDP H Sbjct 481 LDTWALLGRQDLRAAEEALWRWMTAAALVRARGDGGVVMVVAEASIPTVQSLMRWDPASH 540 Query 538 AEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRR 597 AEAELAARTEVGLPPSVHIAA+DG G V LL+ ARLPD +ADLLGPVDLP GVRR Sbjct 541 AEAELAARTEVGLPPSVHIAAVDGTTGAVNELLQEARLPD----EADLLGPVDLPQGVRR 596 Query 598 PAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 PAG P AP+ R+L+RV REQG +LAASLRRGIGVLS RQT Q LVRVQIDPLHIG Sbjct 597 PAGTPLGAPISRLLVRVPREQGWQLAASLRRGIGVLSVRQTHQ---LVRVQIDPLHIG 651 >gi|315444647|ref|YP_004077526.1| replication restart DNA helicase PriA [Mycobacterium sp. Spyr1] gi|315262950|gb|ADT99691.1| replication restart DNA helicase PriA [Mycobacterium sp. Spyr1] Length=669 Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/655 (73%), Positives = 529/655 (81%), Gaps = 7/655 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 ML+VPHLDR+FDYLVPAE SDDAQPGVR +VRFHGRLVD FVLERRSD+DH GKLGWLD+ Sbjct 22 MLTVPHLDREFDYLVPAEQSDDAQPGVRAKVRFHGRLVDAFVLERRSDTDHVGKLGWLDK 81 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 +VSPE VLT ++RRLVDAVAARYAGTR DVLRLAVP RHA VE++ VAPVD Sbjct 82 IVSPECVLTHDVRRLVDAVAARYAGTRADVLRLAVPPRHATVEKKPPVPVEPFTVAPVDT 141 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 + WAAY G QF++AL D+RAARAVWQALPGE W R AEAAA TV AGR VLA+VPDQR Sbjct 142 AAWAAYSGGAQFVSALQDARAARAVWQALPGETWPHRLAEAAAVTVGAGRGVLAVVPDQR 201 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 D+D L AA VD VVALSAGLGP RYRRWL+ LRG AR+VIGTRSAVFAP+++LG Sbjct 202 DVDLLHAAAIERVDAGRVVALSAGLGPAERYRRWLSVLRGQARVVIGTRSAVFAPVADLG 261 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LV++W D DDSLAEPRAPYPHAREVAMLRAHQ RCAA++GGYARTAEA ALVRSGWAHD+ Sbjct 262 LVLMWDDGDDSLAEPRAPYPHAREVAMLRAHQLRCAAMVGGYARTAEAQALVRSGWAHDL 321 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 A R VRA +PRV+AL+DS Y RD AARTARLP++AL AARSAL + PVLVQVPRR Sbjct 322 TATRQTVRAHAPRVIALEDSAYAHERDAAARTARLPTVALDAARSALAANMPVLVQVPRR 381 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+P+L+C +CRA+ARCR CTGPLSL +PG VCRWCGR +P++RC RCGSD +RAVV Sbjct 382 GYVPALSCAKCRAVARCRHCTGPLSLPARDAPGVVCRWCGREEPSMRCARCGSDAIRAVV 441 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPG VITS GD +V + A+VVATPG EP A GGYGAALLLDS Sbjct 442 VGARRTAEELGRAFPGAQVITSGGDDVVASVPQRAAVVVATPGVEPVADGGYGAALLLDS 501 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAED L RWM A+A+VR R GGVV VVAES+IPTVQ+LIRWDPVGHAEA Sbjct 502 WALLGRQDLRAAEDTLRRWMAASAMVRSRADGGVVAVVAESAIPTVQALIRWDPVGHAEA 561 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 EL RTEVGLPP+ H+AALDG V ALL AA LPD A++LGPVDLP G RRPAG Sbjct 562 ELDGRTEVGLPPATHMAALDGVPAAVDALLHAAALPD----GAEVLGPVDLPVGARRPAG 617 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 I DA V RML+RV R+ GLELAA+LRR V SAR + VRVQIDPLHIG Sbjct 618 IAGDATVSRMLVRVPRDGGLELAAALRRATVVQSARHDHEP---VRVQIDPLHIG 669 >gi|145224315|ref|YP_001134993.1| primosome assembly protein PriA [Mycobacterium gilvum PYR-GCK] gi|145216801|gb|ABP46205.1| replication restart DNA helicase PriA [Mycobacterium gilvum PYR-GCK] Length=648 Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/655 (72%), Positives = 529/655 (81%), Gaps = 7/655 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 ML+VPHLDR+FDYLVPAE SDDAQPGVR +VRFHGRLVD FVLERRSD+DH GKLGWLD+ Sbjct 1 MLTVPHLDREFDYLVPAEQSDDAQPGVRAKVRFHGRLVDAFVLERRSDTDHVGKLGWLDK 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 +VSPE VLT ++RRLVDAVAARYAGTR DVLRLAVP RHA VE++ + VAPVD Sbjct 61 IVSPECVLTHDVRRLVDAVAARYAGTRADVLRLAVPPRHATVEKKPPVSVEPFTVAPVDT 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 + WAAY G QF++AL D+RAARAVWQALPGE W R AEAAA TV AGR VLA+VPDQR Sbjct 121 AAWAAYSGGAQFVSALQDARAARAVWQALPGETWPHRLAEAAAVTVGAGRGVLAVVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 D+D L AA VD VVALSAGLGP RYRRWL+ LRG AR+VIGTRSAVFAP+++LG Sbjct 181 DVDLLHAAAIERVDAGRVVALSAGLGPAERYRRWLSVLRGQARVVIGTRSAVFAPVADLG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LV++W D DDSLAEPRAPYPHAREVAMLRAHQ RCAA++GGYARTAEA ALVRSGWAHD+ Sbjct 241 LVLMWDDGDDSLAEPRAPYPHAREVAMLRAHQLRCAAMVGGYARTAEAQALVRSGWAHDL 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 A R VRA +PRV+AL+DS Y RD AARTARLP++AL AARSAL + PVLVQVPRR Sbjct 301 TATRQTVRAHAPRVIALEDSAYAHERDAAARTARLPTVALDAARSALAANMPVLVQVPRR 360 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+P+L+C +CRA+ARCR CTGPLSL +PG VCRWCGR +P++RC RCGSD +RAVV Sbjct 361 GYVPALSCAKCRAVARCRHCTGPLSLPARDAPGVVCRWCGREEPSMRCARCGSDAIRAVV 420 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPG VITS GD +V + A+VVATPG EP A GGYGAALLLDS Sbjct 421 VGARRTAEELGRAFPGAQVITSGGDDVVASVPQRAAVVVATPGVEPVADGGYGAALLLDS 480 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAED L RWM A+A+VR R GGVV VVAES+IPTVQ+LIRWDPVGHAEA Sbjct 481 WALLGRQDLRAAEDTLRRWMAASAMVRSRADGGVVAVVAESAIPTVQALIRWDPVGHAEA 540 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 EL RTEVGLPP+ H+AALDG V ALL AA LPD A++LGPVDLP G RRPAG Sbjct 541 ELDGRTEVGLPPATHMAALDGVPAAVDALLHAAALPD----GAEVLGPVDLPVGARRPAG 596 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 I D V RML+RV R+ GLELAA+LRR V SAR + VRVQIDPLHIG Sbjct 597 IAVDVTVSRMLVRVPRDGGLELAAALRRATVVQSARHDHEP---VRVQIDPLHIG 648 >gi|120403668|ref|YP_953497.1| primosome assembly protein PriA [Mycobacterium vanbaalenii PYR-1] gi|119956486|gb|ABM13491.1| replication restart DNA helicase PriA [Mycobacterium vanbaalenii PYR-1] Length=666 Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/655 (73%), Positives = 527/655 (81%), Gaps = 7/655 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 ML+VPHLDR+FDYLV AE SDDAQPGVRVRVRFHGRLVD F+LERRSD+DH GKLGWL++ Sbjct 19 MLTVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDAFILERRSDTDHVGKLGWLEK 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVS E VLT ++RRLVDAVAARYAGTR DVLRLAVP RHA E++I A V+ Sbjct 79 VVSAECVLTHDVRRLVDAVAARYAGTRPDVLRLAVPPRHANAEKKIREPLAPLTPATVET 138 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 W AY G QF+AAL D RAARAVWQALPGE W R AEA A TV +GR VLA+VPDQR Sbjct 139 PAWQAYSGGPQFIAALGDGRAARAVWQALPGESWPQRLAEAGAVTVHSGRGVLAVVPDQR 198 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 D+DTL AA VD VVALSAGLGP RYRRWLA LRG AR VIGTRSAVFAP+++LG Sbjct 199 DIDTLHAAAVEHVDADRVVALSAGLGPAERYRRWLAVLRGDARFVIGTRSAVFAPVADLG 258 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVM+W D DDSL+EPRAPYPHAREVAMLRAHQ RCAA+IGGYARTAEAHALV SGWAHD+ Sbjct 259 LVMLWDDGDDSLSEPRAPYPHAREVAMLRAHQVRCAAMIGGYARTAEAHALVHSGWAHDL 318 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 A R VR SPRV+AL+DS Y RDPAARTARLP++AL AAR AL APVLVQVPRR Sbjct 319 TATRQTVRVHSPRVIALEDSAYAQERDPAARTARLPTVALDAARKALAGDAPVLVQVPRR 378 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+P+LAC RCR++ARCR CTGPLSL G +PGA+CRWCGR +P LRC RCGSD VRAVV Sbjct 379 GYVPALACARCRSVARCRHCTGPLSLPGRDAPGALCRWCGREEPALRCTRCGSDAVRAVV 438 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGT V+TS GD V + A+VVATPG EPRA GGYGAALLLD+ Sbjct 439 VGARRTAEELGRAFPGTPVVTSGGDDAVATVPQRAAVVVATPGVEPRADGGYGAALLLDT 498 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAEDAL RWM AAALVR R GGVV VVA+SSIPTVQ+LIRWDPVGHAE+ Sbjct 499 WALLGRQDLRAAEDALRRWMAAAALVRSRADGGVVAVVADSSIPTVQALIRWDPVGHAES 558 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 ELA+R EVGLPP+VH+AA+DGP+ V ALL AA LP AD+LGPVDLP G RRPAG Sbjct 559 ELASRGEVGLPPAVHMAAVDGPSQAVNALLGAAALPQ----TADVLGPVDLPLGARRPAG 614 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 + D PV RML+RV R+ GL LAA+LRR V SAR ++ VRVQIDPLHIG Sbjct 615 LDTDMPVNRMLVRVPRDDGLALAAALRRATAVQSARHDQEP---VRVQIDPLHIG 666 >gi|108799347|ref|YP_639544.1| primosome assembly protein PriA [Mycobacterium sp. MCS] gi|119868463|ref|YP_938415.1| primosome assembly protein PriA [Mycobacterium sp. KMS] gi|126435005|ref|YP_001070696.1| primosome assembly protein PriA [Mycobacterium sp. JLS] gi|108769766|gb|ABG08488.1| replication restart DNA helicase PriA [Mycobacterium sp. MCS] gi|119694552|gb|ABL91625.1| replication restart DNA helicase PriA [Mycobacterium sp. KMS] gi|126234805|gb|ABN98205.1| replication restart DNA helicase PriA [Mycobacterium sp. JLS] Length=665 Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/655 (73%), Positives = 529/655 (81%), Gaps = 8/655 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDR+FDYLVPAE SDDAQPGVRVRVRFHGRLVD F+LERRS++DH G+LGWLDR Sbjct 19 MLSVPHLDREFDYLVPAECSDDAQPGVRVRVRFHGRLVDAFLLERRSETDHPGQLGWLDR 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSP+ VLT ++RRLVDAVAARYAGTR DVLRLAVP RHA E++ V +D Sbjct 79 VVSPQQVLTPDVRRLVDAVAARYAGTRPDVLRLAVPPRHAGAEKKPAAELPAVDVPAIDL 138 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 + W AY R QFL A+ + RAARAVWQALPGE WA R AEAAA TV +GR VLAIVPDQR Sbjct 139 TAWRAYPRAEQFLGAVGEGRAARAVWQALPGERWATRLAEAAALTVGSGRGVLAIVPDQR 198 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 D+D L AA L+ + VVALSAGLGP RYRRWL+ LRG AR VIGTRSAVFAP+ +LG Sbjct 199 DVDALHAAAVTLLADERVVALSAGLGPSQRYRRWLSVLRGGARFVIGTRSAVFAPVCDLG 258 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVW D DDSLAEPRAPYPHAREVAMLRAHQ RCAALIGG++RTAE+ ALVRS WAHD+ Sbjct 259 LVMVWDDGDDSLAEPRAPYPHAREVAMLRAHQLRCAALIGGHSRTAESQALVRSRWAHDL 318 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPRP VRA +PRV+AL+DSG++ RDPAA TARLPS+ALR AR+ALQ+G PVLVQVPRR Sbjct 319 VAPRPVVRAAAPRVIALEDSGFEQERDPAAHTARLPSVALRTARAALQAGRPVLVQVPRR 378 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+P+LAC RCRAIARCR CTGPLSL G A+CRWCGR + LRC RCGSD VRAV Sbjct 379 GYLPALACARCRAIARCRHCTGPLSLLERGG-AAMCRWCGREELGLRCGRCGSDSVRAVA 437 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAF GT V+TS+G+ +V + PALVVATPGAEP GYGAALLLD Sbjct 438 VGARRTAEELGRAFAGTPVVTSSGEAMVGTVADEPALVVATPGAEPEPAAGYGAALLLDG 497 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAED L RWM AAALVR R GGVVTVVAES+IPTVQ+LIRWDPVGHAE+ Sbjct 498 WALLGRQDLRAAEDTLRRWMAAAALVRSRADGGVVTVVAESAIPTVQALIRWDPVGHAES 557 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 EL +R+EVGLPP+VHIAA+DG VTALLE A LPD A+ LGPVDLP G RRP G Sbjct 558 ELDSRSEVGLPPAVHIAAVDGDFAAVTALLETADLPD----DAETLGPVDLPVGARRPPG 613 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 DA V RML+RV R++GL LAA+LRRG GVLSAR + RVQIDPLHIG Sbjct 614 TSPDAAVSRMLVRVPRDRGLALAAALRRGTGVLSARHDTEP---ARVQIDPLHIG 665 >gi|333990937|ref|YP_004523551.1| primosomal protein N' PriA [Mycobacterium sp. JDM601] gi|333486905|gb|AEF36297.1| primosomal protein N' PriA [Mycobacterium sp. JDM601] Length=670 Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/655 (75%), Positives = 542/655 (83%), Gaps = 8/655 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 ML+VPHLDR+FDYLV E ++ A PG RVRVRFHGRLVD F+ ERR+D+DH G+LG L+R Sbjct 24 MLTVPHLDREFDYLVTPEQAEHALPGTRVRVRFHGRLVDAFIWERRADTDHTGRLGRLER 83 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 V S EPVLT E+RRLV+AVAARYAG+R DVLRLA+P RHARVERE P PV+ PV+P Sbjct 84 VFSAEPVLTAEVRRLVEAVAARYAGSRADVLRLAIPPRHARVEREAVELPEAPVLEPVNP 143 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 +GW Y G +LAAL + RAARAVWQ LPG+ W DRFAEAA +RAGRT +AIVPDQR Sbjct 144 AGWQRYPAGGAYLAALEEGRAARAVWQVLPGDSWTDRFAEAAVAAIRAGRTAVAIVPDQR 203 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 D+D LW AATA + E +V ALSAGLGP RYRRWL+ LRG ARLVIGTRSAVFAPL ELG Sbjct 204 DVDALWNAATARIGESAVAALSAGLGPATRYRRWLSVLRGGARLVIGTRSAVFAPLPELG 263 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVW D DDSLAEPRAPYPHAREVAMLRAH + CAALIGGYARTAEAHALV +GWAHDV Sbjct 264 LVMVWDDGDDSLAEPRAPYPHAREVAMLRAHLSGCAALIGGYARTAEAHALVNAGWAHDV 323 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VRA +PRVVALDDSGY D RD AARTARLP++AL++AR+AL +GAPVLVQVPRR Sbjct 324 VASRAVVRAAAPRVVALDDSGYADERDAAARTARLPAVALQSARTALAAGAPVLVQVPRR 383 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+PSLACGRCR IARCR CTGPLSL G AVCRWCGRVDP LRC RCGSD VRAVV Sbjct 384 GYVPSLACGRCRTIARCRHCTGPLSLPERGG-AAVCRWCGRVDPALRCGRCGSDSVRAVV 442 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 +GARRTAEELGRAFPGT VITSAGDT+V + D GPALV+ATPGAEPR P GYGA LLLDS Sbjct 443 IGARRTAEELGRAFPGTPVITSAGDTIVDRTDDGPALVIATPGAEPRTPNGYGAGLLLDS 502 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAED L RWM AAALVR R AGGVVTVVAESSIPTVQ+LIRWDPVGHA+A Sbjct 503 WALLGRQDLRAAEDTLRRWMAAAALVRDRDAGGVVTVVAESSIPTVQALIRWDPVGHADA 562 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 EL R EVGLPP+VHIA +DG +VTALLE ARLPD A+ LGPV LPPGVRRPAG Sbjct 563 ELGTRAEVGLPPAVHIATVDGDVESVTALLEQARLPD----GAEPLGPVPLPPGVRRPAG 618 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 I ++ VIRML+RV R+ GL LAA+LR IGVLSAR + + VRVQIDPLHIG Sbjct 619 IGDESAVIRMLVRVGRDHGLVLAAALRDSIGVLSARGSHRP---VRVQIDPLHIG 670 >gi|118473637|ref|YP_887377.1| primosome assembly protein PriA [Mycobacterium smegmatis str. MC2 155] gi|118174924|gb|ABK75820.1| primosomal protein N' [Mycobacterium smegmatis str. MC2 155] Length=666 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/655 (72%), Positives = 529/655 (81%), Gaps = 7/655 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDR+FDYLV E SD+AQPGVR +VRFHGRLVD F+LERRSD+DH G+LGWLD+ Sbjct 19 MLSVPHLDREFDYLVSEELSDNAQPGVRAKVRFHGRLVDAFILERRSDTDHEGRLGWLDK 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTT++RRLVDAVAARYAGTR DVLRLA+P RHA VE++ P VD Sbjct 79 VVSPEPVLTTDVRRLVDAVAARYAGTRPDVLRLAIPPRHATVEKQTPAEPEPIPAIDVDS 138 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWA Y RG QFL AL + RAARAVWQALPGE W R AEAAA TV AG+ VLAI+PDQR Sbjct 139 SGWARYARGEQFLTALGEGRAARAVWQALPGEQWPQRLAEAAAATVNAGQGVLAIMPDQR 198 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 D+D L A TA V E VVALSAGLGP ARYRRWLAALRG AR+VIGTRSAVFAP+++LG Sbjct 199 DVDALHAAVTAHVPESRVVALSAGLGPSARYRRWLAALRGHARVVIGTRSAVFAPVADLG 258 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 L++VW D DD+LAEPRAPYPHAREVAMLRAHQ RCAA+IGGYARTAEAHALVR+ WAHD+ Sbjct 259 LILVWDDGDDNLAEPRAPYPHAREVAMLRAHQLRCAAVIGGYARTAEAHALVRTRWAHDL 318 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VR+ +PRVVAL++S Y RDPAA +ARLPS+AL+AAR+AL + PVL+QVPRR Sbjct 319 VATRSVVRSVAPRVVALEESRYQQERDPAAHSARLPSMALQAARTALDADRPVLIQVPRR 378 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+P+LAC RCR + RCR CTGPL+L S A CRWCGR +P LRC RCGSD VRAVV Sbjct 379 GYVPALACARCRTVTRCRHCTGPLALPDRDSAAAQCRWCGRAEPALRCARCGSDAVRAVV 438 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 VGARRTAEELGRAFPGT VITS GDT+V + ALVV+TPGAEP A GGYGAALLLD+ Sbjct 439 VGARRTAEELGRAFPGTPVITSGGDTVVSDVRGTRALVVSTPGAEPAADGGYGAALLLDA 498 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WALLGRQDLRAAED L RWM AAALVRPR GGVV VVAES +PTVQ+LIRWDPVGHA+A Sbjct 499 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGVVAVVAESVLPTVQALIRWDPVGHADA 558 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 EL +R EVGLPP+VH+AA+DG VTALL+ A LP+ A+ LGPVDLP G RRP G Sbjct 559 ELDSRGEVGLPPAVHMAAVDGTPKAVTALLDHALLPE----GAERLGPVDLPFGARRPPG 614 Query 601 IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 + ADA V RML+RV R GL LAA+LRR VLSAR ++ RVQIDPLHIG Sbjct 615 LDADAEVSRMLVRVPRAGGLALAAALRRATAVLSARHDQEPS---RVQIDPLHIG 666 >gi|289442847|ref|ZP_06432591.1| primosomal protein N priA [Mycobacterium tuberculosis T46] gi|289415766|gb|EFD13006.1| primosomal protein N priA [Mycobacterium tuberculosis T46] Length=431 Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/431 (99%), Positives = 430/431 (99%), Gaps = 0/431 (0%) Query 225 VIGTRSAVFAPLSELGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYAR 284 +IGTRSAVFAPLSELGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYAR Sbjct 1 MIGTRSAVFAPLSELGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYAR 60 Query 285 TAEAHALVRSGWAHDVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAAR 344 TAEAHALVRSGWAHDVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAAR Sbjct 61 TAEAHALVRSGWAHDVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAAR 120 Query 345 SALQSGAPVLVQVPRRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDP 404 SALQSGAPVLVQVPRRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDP Sbjct 121 SALQSGAPVLVQVPRRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDP 180 Query 405 TLRCVRCGSDVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGA 464 T RCVRCGSDVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGA Sbjct 181 TRRCVRCGSDVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGA 240 Query 465 EPRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIP 524 EPRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIP Sbjct 241 EPRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIP 300 Query 525 TVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQAD 584 TVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQAD Sbjct 301 TVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQAD 360 Query 585 LLGPVDLPPGVRRPAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSL 644 LLGPVDLPPGVRRPAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSL Sbjct 361 LLGPVDLPPGVRRPAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSL 420 Query 645 VRVQIDPLHIG 655 VRVQIDPLHIG Sbjct 421 VRVQIDPLHIG 431 >gi|296170735|ref|ZP_06852308.1| DNA replication factor Y [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894618|gb|EFG74354.1| DNA replication factor Y [Mycobacterium parascrofulaceum ATCC BAA-614] Length=538 Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/541 (82%), Positives = 473/541 (88%), Gaps = 10/541 (1%) Query 118 VDPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVP 177 VDP+ W YGRG QFL ALA+SRAARAVWQALPGE WADRFAEAAAQT+RAGR+VLAIVP Sbjct 5 VDPAAWEVYGRGAQFLDALAESRAARAVWQALPGESWADRFAEAAAQTIRAGRSVLAIVP 64 Query 178 DQRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLS 237 DQRDLD L +AATA +DE VVALSAGLGP ARYRRWLAALRG ARLVIGTRSAVFAPLS Sbjct 65 DQRDLDALARAATARIDEGGVVALSAGLGPAARYRRWLAALRGQARLVIGTRSAVFAPLS 124 Query 238 ELGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWA 297 +LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEA ALVRSGWA Sbjct 125 DLGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAQALVRSGWA 184 Query 298 HDVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQV 357 HD+VA R VRAR+PRV+ALDD+GY D RDPAARTAR+PSIALRAARS+LQ+ APVLVQV Sbjct 185 HDIVATRAVVRARTPRVIALDDTGYADERDPAARTARIPSIALRAARSSLQAAAPVLVQV 244 Query 358 PRRGYIPSLACGRCRAIARCRSCTGPLSLQGA---GSPGAVCRWCGRVDPTLRCVRCGSD 414 PRRGY+PSLAC RCR IARCR CTGPLSL + G P VCRWCGR+DPT RC RCGSD Sbjct 245 PRRGYVPSLACARCRTIARCRHCTGPLSLTESPQRGGPALVCRWCGRIDPTRRCARCGSD 304 Query 415 VVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGA 474 VRAVVVGARRTAEELGRAFPGTAV+TS+GD +VP++ AGPALVVATPGAEP A GGYGA Sbjct 305 AVRAVVVGARRTAEELGRAFPGTAVVTSSGDGVVPEVAAGPALVVATPGAEPVAAGGYGA 364 Query 475 ALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDP 534 ALLLD+WALLGRQDLRAAEDALWRWM+AAALVR RG GGVV VAESSIPTVQSLIRWDP Sbjct 365 ALLLDTWALLGRQDLRAAEDALWRWMSAAALVRARGDGGVVLAVAESSIPTVQSLIRWDP 424 Query 535 VGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPG 594 VGHAEA+LAARTEVGLPPSVH+AALDG A V ALLE A LPD AD+LGPVDLP G Sbjct 425 VGHAEADLAARTEVGLPPSVHMAALDGAAEAVAALLEEAGLPD----GADVLGPVDLPAG 480 Query 595 VRRPAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHI 654 VRRPAG PA PV RML+R REQGL LAA+LRRG+ VLSARQ + VRVQIDPLHI Sbjct 481 VRRPAGTPAGTPVTRMLVRARREQGLALAAALRRGVSVLSARQAHEP---VRVQIDPLHI 537 Query 655 G 655 G Sbjct 538 G 538 >gi|240172777|ref|ZP_04751436.1| primosome assembly protein PriA [Mycobacterium kansasii ATCC 12478] Length=502 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/505 (86%), Positives = 453/505 (90%), Gaps = 3/505 (0%) Query 151 GELWADRFAEAAAQTVRAGRTVLAIVPDQRDLDTLWQAATALVDEHSVVALSAGLGPEAR 210 GE WADRFAEAAAQTVRAGR VL IVPDQRDLDTLWQAATA +DE SVVALSAGLGP AR Sbjct 1 GERWADRFAEAAAQTVRAGRAVLGIVPDQRDLDTLWQAATARIDEPSVVALSAGLGPAAR 60 Query 211 YRRWLAALRGSARLVIGTRSAVFAPLSELGLVMVWADADDSLAEPRAPYPHAREVAMLRA 270 YRRWLAALRG+ARLVIGTRSAVFAPLS+LGLVMVWAD DDSLAEPRAPYPHAREVAMLRA Sbjct 61 YRRWLAALRGTARLVIGTRSAVFAPLSDLGLVMVWADGDDSLAEPRAPYPHAREVAMLRA 120 Query 271 HQARCAALIGGYARTAEAHALVRSGWAHDVVAPRPEVRARSPRVVALDDSGYDDARDPAA 330 HQARCAALIGGYARTAEAHALVRSGWAHD+VA RP VRARSPRVVALDDSGY + RDPAA Sbjct 121 HQARCAALIGGYARTAEAHALVRSGWAHDIVAARPVVRARSPRVVALDDSGYAEERDPAA 180 Query 331 RTARLPSIALRAARSALQSGAPVLVQVPRRGYIPSLACGRCRAIARCRSCTGPLSLQGAG 390 RTARLPSIALRAARSAL + APVLVQVPRRGY+PSLACGRCRAI RCR CTGPLSLQ G Sbjct 181 RTARLPSIALRAARSALAAAAPVLVQVPRRGYVPSLACGRCRAITRCRHCTGPLSLQERG 240 Query 391 SPGAVCRWCGRVDPTLRCVRCGSDVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQ 450 PGAVCRWCGR +P LRC RCGSD VRAVV+GARRTAEELGRAFPGTAVITS+GD +VP+ Sbjct 241 GPGAVCRWCGRAEPALRCARCGSDAVRAVVIGARRTAEELGRAFPGTAVITSSGDAVVPE 300 Query 451 LDAGPALVVATPGAEPRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRG 510 + PALVVATPGAEPRA GGYGAALLLD+WALLGRQDLRAAEDALWRWM AAALVR R Sbjct 301 VATRPALVVATPGAEPRASGGYGAALLLDTWALLGRQDLRAAEDALWRWMAAAALVRSRA 360 Query 511 AGGVVTVVAESSIPTVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALL 570 GGVV VVAESSIPTVQSL+RWDPVGHAEAEL AR+EVGLPPSVHIAALDG A V ALL Sbjct 361 DGGVVMVVAESSIPTVQSLVRWDPVGHAEAELTARSEVGLPPSVHIAALDGTAEAVMALL 420 Query 571 EAARLPDPDRLQADLLGPVDLPPGVRRPAGIPADAPVIRMLLRVCREQGLELAASLRRGI 630 + A LPDP+R QA+LLGPV+LPPGVRRPAGIPA APV RML+RV RE GLELAA LRR + Sbjct 421 DQAGLPDPERFQAELLGPVELPPGVRRPAGIPAGAPVTRMLVRVRREHGLELAACLRRAV 480 Query 631 GVLSARQTRQTRSLVRVQIDPLHIG 655 VLSARQT + VRVQIDPLHIG Sbjct 481 SVLSARQTHEP---VRVQIDPLHIG 502 >gi|169629897|ref|YP_001703546.1| primosome assembly protein PriA [Mycobacterium abscessus ATCC 19977] gi|169241864|emb|CAM62892.1| Putative primosomal protein N' (ATP-dependent helicase priA) [Mycobacterium abscessus] Length=671 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/661 (69%), Positives = 507/661 (77%), Gaps = 14/661 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L+VPHLDR+FDYLV AE SDDAQPGVRVRVRFHGRLVD +LERRS+SDH GKLGWLDR Sbjct 19 LLTVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDAILLERRSESDHSGKLGWLDR 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVERE--ITTAPGRPVVAPV 118 VVSP VLT ++RRLVDAVAARYAGTR DVLRLA+P RHARVE+E + A G P P Sbjct 79 VVSPTRVLTPDVRRLVDAVAARYAGTRADVLRLALPPRHARVEKENRVPGADGLPPETP- 137 Query 119 DPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 D SGW+ Y RG +FL AL RAARAVWQALPGE W R AEAA T G+ VLAIVPD Sbjct 138 DRSGWSRYQRGERFLDALTHGRAARAVWQALPGEAWCLRLAEAARATASTGKGVLAIVPD 197 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRD+D L VVALSA LGP RYRRWLA LRG A +VIGTR+AVFAP+ + Sbjct 198 QRDIDALSAECVKNFGVQRVVALSAELGPAERYRRWLAVLRGQATVVIGTRAAVFAPVVD 257 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 LGLVMVW D DD+LAEPR+PYPHAR+VAMLRAHQ RCAA+IGGYARTAE+ ALV GWAH Sbjct 258 LGLVMVWDDGDDNLAEPRSPYPHARDVAMLRAHQLRCAAVIGGYARTAESQALVEGGWAH 317 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 D+VA RP VR S R+ ALDDSGY RDPAAR+ARLP +AL AAR AL+ G VLVQVP Sbjct 318 DLVAARPTVRKSSARISALDDSGYAQERDPAARSARLPMVALTAARDALKRGHSVLVQVP 377 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSLQGAG----SPGAVCRWCGRVDPTLRCVRCGSD 414 RRGY+P+LAC +CR +ARCR CTGPL+ +G G S CRWCGRVD LRC RCGS Sbjct 378 RRGYVPALACTKCRTVARCRHCTGPLAWEGPGGASHSASPSCRWCGRVDADLRCARCGSS 437 Query 415 VVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGA 474 VRAVVVGARRTAEELGRA PG V+TS G + + P LVV TPGAEP PGGYGA Sbjct 438 AVRAVVVGARRTAEELGRALPGVPVVTSGGGEVHDTVTGPPTLVVCTPGAEPVTPGGYGA 497 Query 475 ALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDP 534 ALLLD+WALLGRQDLRAAED L +WM AAALVR R GG V VVA+SS+ TVQ+LIRWDP Sbjct 498 ALLLDAWALLGRQDLRAAEDTLRKWMAAAALVRGRDEGGTVVVVADSSLSTVQALIRWDP 557 Query 535 VGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPG 594 VGHA ELAAR EVGLPP VHIAA+DGPA V L++ A LP+ A+LLGPV+LP G Sbjct 558 VGHAATELAARAEVGLPPQVHIAAVDGPAQAVAGLIDTADLPE----GAELLGPVELPLG 613 Query 595 VRRPAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHI 654 RRPAG+P V+R+L+RV R GLELAA+LRRG+ LSAR+ Q VRVQIDPLH+ Sbjct 614 ARRPAGVPDSVEVVRILVRVERAAGLELAAALRRGVTTLSARRDAQP---VRVQIDPLHV 670 Query 655 G 655 G Sbjct 671 G 671 >gi|325672540|ref|ZP_08152236.1| primosome assembly protein PriA [Rhodococcus equi ATCC 33707] gi|325556417|gb|EGD26083.1| primosome assembly protein PriA [Rhodococcus equi ATCC 33707] Length=657 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/663 (62%), Positives = 470/663 (71%), Gaps = 17/663 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L V HLDR+FDYL+PAE D AQPGVRVRVRF GRLVDG++LER S+H GKLGWLDR Sbjct 4 LLPVAHLDREFDYLIPAELDDQAQPGVRVRVRFSGRLVDGYLLERIESSEHPGKLGWLDR 63 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVS EPVLT E+R LVDAVA RYAGTR DVLRLAVP RHA+VE E T P D Sbjct 64 VVSAEPVLTAEVRDLVDAVAQRYAGTRTDVLRLAVPPRHAKVESEEWTPRPAPEPPKADR 123 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 W+AY G FL AL R RA WQALPGE W R AE A GR V+ +VPDQR Sbjct 124 EAWSAYTHGINFLEALEAGRGPRAAWQALPGEDWTTRLAELAGVVAATGRGVILVVPDQR 183 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD L A ++V VV L+AGLGP ARYRRWLAALRG+AR+V+GTR++VFAP ++G Sbjct 184 DLDRLLAACESVVGADHVVGLAAGLGPAARYRRWLAALRGTARIVVGTRASVFAPTPDIG 243 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LV+VW D D SL+EPR+PYPHAREVA+LRAH CA +I G+ARTAEA ALV SGWAHD+ Sbjct 244 LVVVWDDGDSSLSEPRSPYPHAREVALLRAHSTGCAVVIAGHARTAEAQALVDSGWAHDL 303 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VRAR+P + AL DS + ARDP AR ARLP IA AAR AL +G VLVQVPRR Sbjct 304 VAARDVVRARAPMITALADSDHALARDPGARAARLPGIAFTAARQALAAGHGVLVQVPRR 363 Query 361 GYIPSLACGRCRAIARCRSCTGPLSL------QGAGSPGAVCRWCGRVDPTLRCVRCGSD 414 GY+PSLAC +CRA ARCR C GPL+L GAGSP C+WCG D RC CG+ Sbjct 364 GYVPSLACAKCRAPARCRRCNGPLALPAAAGPDGAGSP--TCKWCGVADTNHRCHACGAR 421 Query 415 VVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGA 474 +RAVVVGA RTAEELGRAF G AV TS G + ++ GP LVV+T GAEP PGGYGA Sbjct 422 ALRAVVVGAGRTAEELGRAFAGIAVHTSGGSDVKAEISPGPKLVVSTVGAEPVMPGGYGA 481 Query 475 ALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDP 534 ALLLD WALLGR DLRAAE+ L RWMTA+ALVRP G GG V VVA+S IPTVQ+L+RWDP Sbjct 482 ALLLDGWALLGRADLRAAEETLRRWMTASALVRPHGDGGQVVVVADSGIPTVQALVRWDP 541 Query 535 VGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPG 594 V HA +L R EVG PP+VH+AA+DG ++ +LE A LP+ A++LGPV LPPG Sbjct 542 VWHARGQLEERAEVGFPPAVHLAAIDGTVASIGEILELAALPE----SAEVLGPVPLPPG 597 Query 595 VRRP--AGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPL 652 R P + P V RML+RV R G LA +L V SAR++ VRVQ+DPL Sbjct 598 ERLPFSSDEPEPEDVERMLVRVPRADGRALAKALAEARAVRSARRSVGP---VRVQVDPL 654 Query 653 HIG 655 IG Sbjct 655 RIG 657 >gi|289749960|ref|ZP_06509338.1| primosomal protein N priA [Mycobacterium tuberculosis T92] gi|289690547|gb|EFD57976.1| primosomal protein N priA [Mycobacterium tuberculosis T92] Length=399 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/375 (100%), Positives = 375/375 (100%), Gaps = 0/375 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR Sbjct 25 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 84 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP Sbjct 85 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 144 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR Sbjct 145 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 204 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG Sbjct 205 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 264 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV Sbjct 265 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 324 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR Sbjct 325 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 384 Query 361 GYIPSLACGRCRAIA 375 GYIPSLACGRCRAIA Sbjct 385 GYIPSLACGRCRAIA 399 >gi|312139576|ref|YP_004006912.1| primosomal protein n' pria [Rhodococcus equi 103S] gi|311888915|emb|CBH48228.1| primosomal protein N' PriA [Rhodococcus equi 103S] Length=657 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/665 (62%), Positives = 473/665 (72%), Gaps = 21/665 (3%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L V HLDR+FDYL+PAE D AQPGVRVRVRF GRLVDG++LER S+H GKLGWLDR Sbjct 4 LLPVAHLDREFDYLIPAELDDQAQPGVRVRVRFSGRLVDGYLLERIESSEHPGKLGWLDR 63 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAP--V 118 VVS EPVLT E+R LVDAVA RYAGTR DVLRLAVP RHA+VE E T RPV P Sbjct 64 VVSAEPVLTAEVRDLVDAVAQRYAGTRTDVLRLAVPPRHAKVESEEWTP--RPVPEPPKA 121 Query 119 DPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 D W+AY G FL AL R RA WQALPGE W R AE A GR V+ +VPD Sbjct 122 DREAWSAYTHGINFLEALEAGRGPRAAWQALPGEDWTTRLAELAGVVAATGRGVILVVPD 181 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRDLD L A ++V VV L+AGLGP ARYRRWLAALRG+AR+V+GTR++VFAP + Sbjct 182 QRDLDRLLAACESVVGADHVVGLAAGLGPAARYRRWLAALRGTARIVVGTRASVFAPTPD 241 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 +GLV+VW D D SL+EPR+PYPHAREVA+LRAH CA +I G+ARTAEA ALV SGWAH Sbjct 242 IGLVVVWDDGDSSLSEPRSPYPHAREVALLRAHSTGCAVVIAGHARTAEAQALVDSGWAH 301 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 D+VA R VRAR+P + AL DS + ARDP AR ARLP IA AAR AL +G VLVQVP Sbjct 302 DLVAARDVVRARAPMITALADSDHALARDPGARAARLPGIAFAAARQALAAGHGVLVQVP 361 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSL------QGAGSPGAVCRWCGRVDPTLRCVRCG 412 RRGY+PSLAC +CRA ARCR C GPL+L GAGSP C+WCG D RC CG Sbjct 362 RRGYVPSLACAKCRAPARCRRCNGPLALPAAAGPDGAGSP--TCKWCGVADTNHRCHACG 419 Query 413 SDVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGY 472 + +RAVVVGA RTAEELGRAF G AV TS G + ++ GP LVV+T GAEP PGGY Sbjct 420 ARALRAVVVGAGRTAEELGRAFAGIAVHTSGGSDVKAEISPGPKLVVSTVGAEPVMPGGY 479 Query 473 GAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRW 532 GAALLLD WALLGR DLRAAE+ L RWMTA+ALVRP G GG V VVA+S IPTVQ+L+RW Sbjct 480 GAALLLDGWALLGRADLRAAEETLRRWMTASALVRPHGDGGQVVVVADSGIPTVQALVRW 539 Query 533 DPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLP 592 DPV HA +L R EVG PP+VH+AA+DG ++ +LE A LP+ A++LGPV LP Sbjct 540 DPVWHARGQLEERAEVGFPPAVHLAAIDGTVASIGEILELAALPE----SAEVLGPVPLP 595 Query 593 PGVRRP--AGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQID 650 PG R P + P V RML+RV R G LA +L V SAR++ VRVQ+D Sbjct 596 PGERLPFSSDEPEPEDVERMLVRVPRADGRALAKALAEARAVRSARRSVGP---VRVQVD 652 Query 651 PLHIG 655 PL IG Sbjct 653 PLRIG 657 >gi|226366349|ref|YP_002784132.1| primosome assembly protein PriA [Rhodococcus opacus B4] gi|226244839|dbj|BAH55187.1| primosomal protein n' [Rhodococcus opacus B4] Length=657 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/663 (60%), Positives = 468/663 (71%), Gaps = 17/663 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L + HLDR+FDYLVP + AQPGVRVR+RF GRLVDGFV+ R + SDH G+ GWL+R Sbjct 4 LLPLAHLDREFDYLVPKDLDVHAQPGVRVRIRFAGRLVDGFVVARTATSDHQGRFGWLER 63 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 V+SPE VLT EI R+VD VA RYAGTR DVLRLA+P RHAR E E + P + Sbjct 64 VISPERVLTEEITRVVDLVAGRYAGTRADVLRLAIPPRHARAESEAASEPPEVSGTAIAT 123 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 GW Y G FL ALA+ RA RAVWQALPGE W R AE + G + + +VPDQR Sbjct 124 DGWDRYVHGAAFLTALAEGRAPRAVWQALPGENWPGRLAELSGLVAATGASTVVVVPDQR 183 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD + A L+ + +VV L+AGLGP RYRRWLAALRG+AR+V+GTRS+VFAP G Sbjct 184 DLDRVVAAVGTLLGKDAVVGLAAGLGPALRYRRWLAALRGTARVVVGTRSSVFAPTPRTG 243 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 L++VW D DD+ +EPRAPYPHAREVA+LRA+ + CA ++ G+ARTAEA ALV SGWAHD+ Sbjct 244 LIVVWDDGDDNHSEPRAPYPHAREVALLRAYASGCAVVLAGHARTAEAQALVDSGWAHDL 303 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VRA +P++ AL DS + ARDP AR ARLP+IA AAR AL +G VLVQVPRR Sbjct 304 VASRDSVRAAAPKITALADSDHALARDPGARAARLPAIAFAAAREALGAGRGVLVQVPRR 363 Query 361 GYIPSLACGRCRAIARCRSCTGPLSL------QGAGSPGAVCRWCGRVDPTLRCVRCGSD 414 GY+PSLACG+CRA ARCR C GPL+L GAG+P CRWCG D RC CG+ Sbjct 364 GYVPSLACGKCRAPARCRRCNGPLALPSAAGPDGAGTP--ACRWCGVADAAHRCHACGAR 421 Query 415 VVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGA 474 +RAVVVGA RTAEELGRAFPG AV S G +V ++ GP LVV+T GAEP PGGYGA Sbjct 422 ALRAVVVGAGRTAEELGRAFPGVAVRMSGGSDVVDEVKQGPTLVVSTVGAEPVMPGGYGA 481 Query 475 ALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDP 534 ALLLD WALLGR DLRAAE+ + RWMTA++LVRP GG V VVA+S IPTVQ+L+RWDP Sbjct 482 ALLLDGWALLGRPDLRAAEETMRRWMTASSLVRPFADGGQVVVVADSGIPTVQALVRWDP 541 Query 535 VGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPG 594 VGHA A+ R EVG PP++H+AA+DG A + LLE A LP A+LLGPV+LP G Sbjct 542 VGHARAQYEERAEVGFPPAIHLAAIDGSAKAIADLLELADLP----ANAELLGPVELPAG 597 Query 595 VRRP--AGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPL 652 R P P A V RML+RV R +G LA +L V SAR+ Q RVQIDP+ Sbjct 598 ERLPFSGDAPEPADVERMLIRVPRGEGKPLAKALGEAQSVRSARKDSQP---ARVQIDPI 654 Query 653 HIG 655 IG Sbjct 655 RIG 657 >gi|111024109|ref|YP_707081.1| primosome assembly protein PriA [Rhodococcus jostii RHA1] gi|110823639|gb|ABG98923.1| probable primosomal protein N [Rhodococcus jostii RHA1] Length=672 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/663 (59%), Positives = 468/663 (71%), Gaps = 17/663 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L + HLDR+FDYLVP + + A+PGVRVR+RF GRLVDGFV+ R + SDH G+ GWL+R Sbjct 19 LLPLAHLDREFDYLVPQDLDEQARPGVRVRIRFAGRLVDGFVVSRNATSDHQGRFGWLER 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 V+SPE VLT EI R+VD VA RYAGTR DVLRLA+P RHAR E E + P + ++ Sbjct 79 VISPERVLTEEITRVVDLVAGRYAGTRADVLRLAIPPRHARAESEAASEPPEVPDSAIET 138 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 W Y G FL AL+ RA RAVWQALPGE W R AE + G + + +VPDQR Sbjct 139 EAWDRYVHGGAFLTALSGERAPRAVWQALPGEDWPARLAELSGLVAATGASTVVVVPDQR 198 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD + A L+ + +VV L+AGLGP RYRRWLAALRG+A++V+GTRS+VFAP G Sbjct 199 DLDRVVAAVEKLLGKDAVVGLAAGLGPALRYRRWLAALRGTAKVVVGTRSSVFAPTPRTG 258 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 L++VW D DD+ +EPRAPYPHAREVA+LRA+ + CA ++ G+ARTAEA ALV SGWAHD+ Sbjct 259 LIVVWDDGDDNHSEPRAPYPHAREVALLRAYASGCAVVLAGHARTAEAQALVDSGWAHDL 318 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VRA +P++ AL DS + ARDP AR ARLP+IA AAR AL +G VLVQVPRR Sbjct 319 VASRDSVRAAAPKITALADSDHALARDPGARAARLPAIAFAAAREALGAGRGVLVQVPRR 378 Query 361 GYIPSLACGRCRAIARCRSCTGPLSL------QGAGSPGAVCRWCGRVDPTLRCVRCGSD 414 GY+PSLACG+CRA ARCR C GPL+L GAG+P CRWCG D RC CG+ Sbjct 379 GYVPSLACGKCRAPARCRRCNGPLALPSAAGPDGAGTPA--CRWCGVADAAHRCHACGAK 436 Query 415 VVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGA 474 +RAVVVGA RTAEELGRAFPG V S G +V ++ GP LVV+T GAEP PGGYGA Sbjct 437 ALRAVVVGAGRTAEELGRAFPGVPVRMSGGTDVVDEVKQGPTLVVSTVGAEPVMPGGYGA 496 Query 475 ALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDP 534 ALLLD WALLGR DLRAAE+ L RWMTA++LVRP GG V VVA+S IPTVQ+L+RWDP Sbjct 497 ALLLDGWALLGRPDLRAAEETLRRWMTASSLVRPFAEGGQVVVVADSGIPTVQALVRWDP 556 Query 535 VGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPG 594 VGHA A+ R EVG PP++H+AA+DG A + LL+ A LP A+LLGPV+LP G Sbjct 557 VGHARAQYEERAEVGFPPAIHLAAIDGSAKAIADLLDLADLP----ANAELLGPVELPAG 612 Query 595 VRRP--AGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPL 652 R P P A V RML+RV R +G LA +L V SAR+ Q RVQIDP+ Sbjct 613 ERLPFSGDAPEPADVERMLIRVPRGEGKPLAKALGEAQSVRSARKDSQP---ARVQIDPI 669 Query 653 HIG 655 IG Sbjct 670 RIG 672 >gi|226306499|ref|YP_002766459.1| primosomal protein n' [Rhodococcus erythropolis PR4] gi|226185616|dbj|BAH33720.1| putative primosomal protein n' [Rhodococcus erythropolis PR4] Length=672 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/663 (59%), Positives = 469/663 (71%), Gaps = 17/663 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 ML + HLDR+FDYLVP E DAQPGVRVR+RF GRLVDGF++ R + SDH GK GWL+R Sbjct 19 MLPLAHLDREFDYLVPRELEADAQPGVRVRIRFAGRLVDGFIVSREATSDHQGKFGWLER 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 V+S E VLT EI ++VD VA RYAGTR DVLRLAVP RHA+VE E P Sbjct 79 VISSERVLTAEIAQVVDRVAERYAGTRADVLRLAVPPRHAKVEAEPWEPAEPPSAPEPIE 138 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 +GW Y G FL+A+ +S++ RAVWQALPGE W R AE A +G++ + +VPDQR Sbjct 139 NGWHLYRFGDAFLSAIRESKSPRAVWQALPGENWPLRLAELAGAVAASGKSAILVVPDQR 198 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD + A T L +VV LSAGLGP RYRRWLAALRG+AR+V+GTRSAVFAP E G Sbjct 199 DLDRVVAACTELSGADAVVGLSAGLGPAMRYRRWLAALRGTARIVVGTRSAVFAPTPETG 258 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LV+VW D DD+L+EPR+PYPHAREVA+LR + A CA +IGG++RTAE+ LV SGWAHD+ Sbjct 259 LVVVWDDGDDNLSEPRSPYPHAREVAVLRGYVAGCAVVIGGFSRTAESQVLVDSGWAHDL 318 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VRA +P++ AL DS ARDP AR ARLP+IA AAR AL G VLVQVPRR Sbjct 319 VATRDVVRAHAPKITALADSDQALARDPGARAARLPAIAFAAARRALGEGNGVLVQVPRR 378 Query 361 GYIPSLACGRCRAIARCRSCTGPLSL------QGAGSPGAVCRWCGRVDPTLRCVRCGSD 414 GY+P+LACG+CRA ARCR C GPL+L GAG+P CRWCG D RC CG+ Sbjct 379 GYVPTLACGKCRAPARCRRCNGPLALPAAAGPDGAGTP--ACRWCGVADAAYRCHACGAK 436 Query 415 VVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGA 474 +RAVVVGA RTAEELGRAFPG V+ S G +V +L GPALVV+T GAEP GGYGA Sbjct 437 ALRAVVVGAGRTAEELGRAFPGVKVVLSGGGDVVKELPHGPALVVSTVGAEPVMTGGYGA 496 Query 475 ALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDP 534 ALLLD WALLGR DLRAAE+ L RWM+AAA+V P GG V VVA+S IPTVQ+L+RWDP Sbjct 497 ALLLDGWALLGRPDLRAAEETLRRWMSAAAMVIPLSEGGEVVVVADSGIPTVQALVRWDP 556 Query 535 VGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPG 594 VGHA+++ R EVG PP+VH+AA+DG + + L+++A LP A LLGPV+LP G Sbjct 557 VGHAQSQFEERDEVGFPPAVHMAAIDGGSAAIAELVDSADLP----ASAVLLGPVELPAG 612 Query 595 VRRPAGIPADAPVI--RMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPL 652 R P ++ V RML+RV R+ G LA +L +AR R++ VR+QIDP Sbjct 613 ERLPYSGEDESGVAPERMLVRVPRKDGRGLADALAH---AYAARSARKSSGPVRIQIDPR 669 Query 653 HIG 655 IG Sbjct 670 RIG 672 >gi|229493563|ref|ZP_04387348.1| primosomal protein N [Rhodococcus erythropolis SK121] gi|229319524|gb|EEN85360.1| primosomal protein N [Rhodococcus erythropolis SK121] Length=672 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/663 (59%), Positives = 469/663 (71%), Gaps = 17/663 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 ML + HLDR+FDYLVP E DAQPGVRVR+RF GRLVDGF++ R + SDH GK GWL+R Sbjct 19 MLPLAHLDREFDYLVPRELEADAQPGVRVRIRFAGRLVDGFIVSREATSDHQGKFGWLER 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 V+S E VLT EI ++VD VA RYAGTR DVLRLAVP RHA+VE E P Sbjct 79 VISSERVLTAEIAQVVDRVAERYAGTRADVLRLAVPPRHAKVEAEPWEPAEPPSAPEPIE 138 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 +GW Y G FL+A+ +S++ RAVWQALPGE W R AE A +G++ + +VPDQR Sbjct 139 NGWHLYRFGDAFLSAIRESKSPRAVWQALPGENWPLRLAELAGAVAASGKSAILVVPDQR 198 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD + A T L +VV LSAGLGP RYRRWLAALRG+AR+V+GTRSAVFAP E G Sbjct 199 DLDRVVAACTELSGADAVVGLSAGLGPAMRYRRWLAALRGTARIVVGTRSAVFAPTPETG 258 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LV+VW D DD+L+EPR+PYPHAREVA+LR + A CA +IGG++RTAEA LV SGWAHD+ Sbjct 259 LVVVWDDGDDNLSEPRSPYPHAREVAVLRGYVAGCAVVIGGFSRTAEAQVLVDSGWAHDL 318 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VRA +P++ AL DS ARDP AR ARLP+IA AAR AL G VLVQVPRR Sbjct 319 VATRDVVRAHAPKITALADSDQALARDPGARAARLPAIAFAAARRALGEGNGVLVQVPRR 378 Query 361 GYIPSLACGRCRAIARCRSCTGPLSL------QGAGSPGAVCRWCGRVDPTLRCVRCGSD 414 GY+P+LACG+CRA ARCR C GPL+L GAG+P CRWCG D RC CG+ Sbjct 379 GYVPTLACGKCRAPARCRRCNGPLALPAAAGPDGAGTPA--CRWCGVADAAYRCHACGAK 436 Query 415 VVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGA 474 +RAVVVGA RTAEELGRAFPG V+ S G +V +L GPALVV+T GAEP GGYGA Sbjct 437 ALRAVVVGAGRTAEELGRAFPGVKVVLSGGSDVVKELPHGPALVVSTVGAEPVMTGGYGA 496 Query 475 ALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDP 534 ALLLD WALLGR DLRAAED L RWM+AAA+V P GG V VVA+S IPTVQ+L+RWDP Sbjct 497 ALLLDGWALLGRPDLRAAEDTLRRWMSAAAMVIPLSEGGEVVVVADSGIPTVQALVRWDP 556 Query 535 VGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPG 594 VGHA+++ R EVG PP+VH+AA+DG + + L+++A LP A LLGPV+LP G Sbjct 557 VGHAQSQFEERDEVGFPPAVHMAAIDGGSAAIAELVDSADLP----ASAVLLGPVELPAG 612 Query 595 VRRPAGIPADAPVI--RMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPL 652 R P ++ V RML+RV R+ G LA +L +AR R++ VR+QIDP Sbjct 613 ERLPYSGEDESGVAPERMLVRVPRKDGRGLADALAH---ARAARSARKSSGPVRIQIDPR 669 Query 653 HIG 655 IG Sbjct 670 RIG 672 >gi|343924559|ref|ZP_08764107.1| primosomal protein n' [Gordonia alkanivorans NBRC 16433] gi|343765494|dbj|GAA11033.1| primosomal protein n' [Gordonia alkanivorans NBRC 16433] Length=652 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/660 (58%), Positives = 460/660 (70%), Gaps = 16/660 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L + HLDR FDYL+ ++ A PGVRVRVRF GRL+DGF+L+R SDH GKLGWLDR Sbjct 4 ILGLAHLDRPFDYLIDSDQDATAVPGVRVRVRFAGRLIDGFLLDRIEKSDHPGKLGWLDR 63 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVS EPVL+ E+ L AVA RYAGT DV+RLA+P RHAR E+E T P V AP D Sbjct 64 VVSAEPVLSPELASLCRAVADRYAGTMGDVVRLAIPPRHARTEKETTPEPTTVVEAP-DL 122 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 W Y F A+AD RA WQALPGE W R AE AA T+ AGR + IVPDQR Sbjct 123 EAWRRYPLAESFFEAIADGGHPRAAWQALPGEDWPRRLAELAATTLAAGRGCIIIVPDQR 182 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD +W L+ + V AL+AGLGP ARYRRWLAA RG+A+LVIGTRSAVFAP+ +LG Sbjct 183 DLDRVWAECEPLIGDQGV-ALAAGLGPTARYRRWLAARRGAAKLVIGTRSAVFAPVRDLG 241 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LV+VW D DDS+A+PRAPYPH REVA+LR+HQ RCA ++GG+ARTAEA ALV SGWAHD+ Sbjct 242 LVVVWDDGDDSMADPRAPYPHPREVAVLRSHQERCALVLGGFARTAEAQALVASGWAHDL 301 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA RP VR RSPRV A+ D ARDP AR+AR+P +A AARSA + PV+ VPRR Sbjct 302 VADRPLVRHRSPRVQAISDDDRQIARDPMARSARIPEVAFDAARSAFAADQPVVFSVPRR 361 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GY+PSLAC RCR ARCR C GPL + G+ CRWCGR +PT RC CG+ VRA V Sbjct 362 GYVPSLACTRCREHARCRGCNGPLQMD--GNQRLSCRWCGRPEPTFRCPECGNTKVRATV 419 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 GARRTAEELGRAF G V TS GD+++ +++ G LVVATPGAEP AP GYGAA+++D+ Sbjct 420 TGARRTAEELGRAFAGVPVHTSGGDSIIDEIEPGARLVVATPGAEPVAPDGYGAAIVVDT 479 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WA L R DLRA E A+ RWM A +VRP G GG V +VA+S++ VQ+LIRWDPVG A Sbjct 480 WAQLDRADLRAEEHAVRRWMALAGMVRPHGEGGRVVIVADSTLAPVQALIRWDPVGFASI 539 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 +L+ R E+G PP+V +A++DGP +T +E LP+ +D+LGPV LPPGVR PAG Sbjct 540 QLSERVELGFPPAVTMASVDGPTQVITDFVEHLELPE----GSDVLGPVPLPPGVRPPAG 595 Query 601 -----IPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 AD + R+L+R+ R+ G LA +L + R T + +RVQ+DP IG Sbjct 596 SAEWEAAADDEMDRILVRLPRKHGRLLAQAL---AAGQARRNTHRQTGPIRVQVDPPTIG 652 >gi|262202276|ref|YP_003273484.1| primosomal protein N' (replication factor Y) - superfamily II helicase-like protein [Gordonia bronchialis DSM 43247] gi|262085623|gb|ACY21591.1| Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein [Gordonia bronchialis DSM 43247] Length=648 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/658 (59%), Positives = 455/658 (70%), Gaps = 16/658 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L + HLDR FDYLV E A PGVRVRVRF GRLVDG +L+R +S+H GKLGWLDR Sbjct 4 LLGLTHLDRPFDYLVDTEQDATALPGVRVRVRFAGRLVDGILLDRIDESEHPGKLGWLDR 63 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVS EPVL E+ L AVA RYAGT DV+RLAVP RHAR E+E T AP VVAP D Sbjct 64 VVSAEPVLGPELAALCRAVADRYAGTMGDVIRLAVPPRHARTEKEETPAPTSVVVAP-DR 122 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 +GW Y FL +L+ + RA WQA+PGE W R AE AA V AGR + +VPDQR Sbjct 123 AGWRTYRSADGFLDSLSAAHP-RAAWQAVPGEDWPRRLAELAATVVAAGRGAIIVVPDQR 181 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD + A L+ + V LSAGLGP ARYRRWLA RG+A +V+GTRSA+FAP++ELG Sbjct 182 DLDRVSAACEPLLGDRCVT-LSAGLGPTARYRRWLAVRRGAATVVLGTRSAIFAPVAELG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LV+VW D DDSLAEPRAPYPH REV +LRAHQ +CA +IGG+ARTAEA ALV +GWAHD+ Sbjct 241 LVVVWDDGDDSLAEPRAPYPHPREVGVLRAHQEQCALVIGGFARTAEAQALVAAGWAHDL 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VA R VR RSP V A+ D ARDP AR+AR+P++A AAR+AL + PV+ VPRR Sbjct 301 VADRQVVRTRSPHVQAITDDDAQVARDPQARSARIPAVAFDAARAALAADTPVIFSVPRR 360 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAVV 420 GYIPSLAC RCR RCR+C GPL L G+ CRWCGR +P+ RC CG VRA+V Sbjct 361 GYIPSLACTRCREHVRCRACHGPLQLDGS---HLSCRWCGRAEPSFRCPACGGTAVRALV 417 Query 421 VGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDS 480 GARRTAEELGRAF G V+TS G T++ + AG +VVATPGAEP AP GYGAA++LD+ Sbjct 418 TGARRTAEELGRAFAGVPVVTSGGSTIIDDIPAGARVVVATPGAEPVAPDGYGAAVILDT 477 Query 481 WALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEA 540 WA L R DLRA E A+ RWM VRP G GG + +VA+SS+P VQ+LIRWDPVG AE Sbjct 478 WAQLDRADLRAGEYAVRRWMAIGGQVRPHGDGGRLVIVADSSLPPVQALIRWDPVGFAET 537 Query 541 ELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAG 600 ELA R E+G PP+V +A++DG +T E LP + D+LGPV LPPGVR PAG Sbjct 538 ELAERAELGFPPAVTMASVDGDRQLITEFAEHLDLPP----EGDVLGPVPLPPGVRPPAG 593 Query 601 I---PADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 DA V R+L+RV R G LA +L + + R TR +RVQIDP IG Sbjct 594 SDREDLDAEVDRLLVRVPRRDGRLLADAL---VTAQARRNTRHETGPIRVQIDPPTIG 648 >gi|333919533|ref|YP_004493114.1| DNA replication factor Y [Amycolicicoccus subflavus DQS3-9A1] gi|333481754|gb|AEF40314.1| DNA replication factor Y [Amycolicicoccus subflavus DQS3-9A1] Length=661 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/658 (58%), Positives = 448/658 (69%), Gaps = 10/658 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 ML +PHLDR+FDYL+PAE + AQPGVRVRVRF GRLVDG++++R S+ GKLGWLDR Sbjct 11 MLPLPHLDREFDYLIPAELDEQAQPGVRVRVRFAGRLVDGYLVDRAETSEREGKLGWLDR 70 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSP VLT EI RLVDAVA RYAGTR DVLRLA+P RHAR+E E PV+A D Sbjct 71 VVSPVQVLTPEISRLVDAVAERYAGTRADVLRLAIPPRHARIESENREPVDPPVIAAPDV 130 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 S W+ Y GR AL + +AARAVWQA+PGE W R AE AAQ GR L +VPDQR Sbjct 131 SAWSTYTLGRALCEALGEGKAARAVWQAVPGEEWPRRCAELAAQVAVTGRGALIVVPDQR 190 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLD + A ++ +V LSAGLGP RYRRWLAALRG AR+V+GTRSA+FAP+ LG Sbjct 191 DLDRVANACNEIIGGGTVSVLSAGLGPAQRYRRWLAALRGHARVVVGTRSAMFAPVHNLG 250 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LV+VW D DD AEPR+PYPH R+VA+ RAH + A + G+ART E+ LV SGWA +V Sbjct 251 LVVVWDDGDDLHAEPRSPYPHVRDVAIQRAHLSGAAFVSAGFARTCESQLLVESGWAQEV 310 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRR 360 VAPR EVRA +PR+VAL DS RDPAAR ARLP+IA AAR AL PVLVQVPRR Sbjct 311 VAPRAEVRAHAPRIVALADSEAALVRDPAARAARLPAIAFAAARDALARDEPVLVQVPRR 370 Query 361 GYIPSLACGRCRAIARCRSCTGPLSLQGA-GSPGAVCRWCGRVDPTLRCVRCGSDVVRAV 419 GY+P+LAC CRA RCR C GP+ + G CRWC +C CGS +RA Sbjct 371 GYVPALACQDCRAPLRCRVCAGPMEMVSEDGRQAFRCRWCATRVGAPKCDACGSGRIRAQ 430 Query 420 VVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLD 479 VVGARRTAEELGRAFPG V+TS G+ ++ + +LVV TPGAEP A GYGAALLLD Sbjct 431 VVGARRTAEELGRAFPGVPVLTSGGEAVLASVQQRKSLVVCTPGAEPVADAGYGAALLLD 490 Query 480 SWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAE 539 WALLGR DLR +EDAL +WM A LV+P AGG+V VVA+S IP VQ+LIRWDP G A+ Sbjct 491 GWALLGRADLRVSEDALRKWMLACTLVKPASAGGMVVVVADSGIPVVQALIRWDPAGFAD 550 Query 540 AELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPA 599 EL R EVG PP+V + A+DG + V + +P D+LGPV LP G R P Sbjct 551 VELRQREEVGFPPAVKMIAIDGDSTAVADFVAHGDMPQ----GTDVLGPVPLPAGARMPV 606 Query 600 -GIPAD-APVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 G AD V R+LLR R G LA +R+ V + R ++ VRVQ+DPLHIG Sbjct 607 QGAGADPEDVERVLLRTGRRSGAALAGEVRK---VQAVRSAQKGAGPVRVQVDPLHIG 661 >gi|289753483|ref|ZP_06512861.1| primosome assembly protein PriA [Mycobacterium tuberculosis EAS054] gi|289694070|gb|EFD61499.1| primosome assembly protein PriA [Mycobacterium tuberculosis EAS054] Length=439 Score = 632 bits (1629), Expect = 9e-179, Method: Compositional matrix adjust. Identities = 329/329 (100%), Positives = 329/329 (100%), Gaps = 0/329 (0%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR Sbjct 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP Sbjct 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 Query 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR Sbjct 121 SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQR 180 Query 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG Sbjct 181 DLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELG 240 Query 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV Sbjct 241 LVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDV 300 Query 301 VAPRPEVRARSPRVVALDDSGYDDARDPA 329 VAPRPEVRARSPRVVALDDSGYDDARDPA Sbjct 301 VAPRPEVRARSPRVVALDDSGYDDARDPA 329 >gi|54025582|ref|YP_119824.1| primosome assembly protein PriA [Nocardia farcinica IFM 10152] gi|54017090|dbj|BAD58460.1| putative primosomal protein [Nocardia farcinica IFM 10152] Length=693 Score = 628 bits (1620), Expect = 9e-178, Method: Compositional matrix adjust. Identities = 387/704 (55%), Positives = 465/704 (67%), Gaps = 63/704 (8%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L+ HLDRDFDYLVPAE + A+PGVRVRVRF GRLVDG++L+R SDH G L L+R Sbjct 4 LLTPAHLDRDFDYLVPAEMDELARPGVRVRVRFAGRLVDGYLLDRLERSDHDGTLIPLER 63 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVER---------------- 104 VVS E VLT EI RLV AVA+RYAGTR DVLRLA+P RHAR E Sbjct 64 VVSGERVLTPEILRLVTAVASRYAGTRADVLRLAIPPRHARAENGGAKKAAGQGDSAAGG 123 Query 105 -----------------------EITTAPG-------RPVVAPVDPSGWAAYGRGRQFLA 134 + T+ G RP PVD +GWA Y G F+A Sbjct 124 PEAAAADVPPIDADGAEAEVSGSSVATSVGPEADSAERP---PVDTAGWARYLHGDSFVA 180 Query 135 ALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQRDLDTLWQAATALVD 194 ALA R RA WQALPGE WA R AE AA VR+GR V+ +VPDQRDLD + ALV Sbjct 181 ALAAGRGVRAAWQALPGEDWARRLAELAAVVVRSGRGVILMVPDQRDLDRVLAECVALVG 240 Query 195 EHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELGLVMVWADADDSLAE 254 + + V LSAGLGP ARYRRWLA LRG AR+V+GTR+AVFAP+++LGLV +W D DD+ AE Sbjct 241 D-TAVGLSAGLGPAARYRRWLAVLRGQARVVVGTRAAVFAPVADLGLVAIWDDGDDTYAE 299 Query 255 PRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDVVAPRPEVRARSPRV 314 PRAPYPHAREV+MLRAH+ A + G+ARTAE A+V SGWAHD+VA RP VR +PR+ Sbjct 300 PRAPYPHAREVSMLRAHETGAAFVAAGFARTAEVQAVVDSGWAHDLVAERPVVRTAAPRI 359 Query 315 VALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRRGYIPSLACGRCRAI 374 A DS RDP AR R+P++A AAR+AL+ GA VLVQVPRRGY+P+LAC +CR Sbjct 360 SAPGDSDIALERDPVARAVRIPAVAFAAARAALKEGAAVLVQVPRRGYVPALACSKCRTP 419 Query 375 ARCRSCTGPLSLQGAGSPGA---VCRWCGRVDPTLRCVRCGSDVVRAVVVGARRTAEELG 431 ARCR C GPL+L A A CRWCG + RC C S +RAVV+GA RTAEELG Sbjct 420 ARCRRCNGPLALPDAPDGAAHSPACRWCGVAETAFRCPVCASRALRAVVIGATRTAEELG 479 Query 432 RAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDSWALLGRQDLRA 491 RAFPG + S+ ++ ++ GP +VVAT GAEP GGYG ALLLD WALLGR DLRA Sbjct 480 RAFPGVPIRGSSAGAMLDSVEPGPQVVVATVGAEPVVRGGYGVALLLDGWALLGRADLRA 539 Query 492 AEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEAELAARTEVGLP 551 EDAL RW+ AAALVR G V V+AE ++PTVQ+L+RWDPVGHA AE+A R+EVG P Sbjct 540 GEDALRRWLNAAALVRSHGQ---VVVMAEPALPTVQALVRWDPVGHARAEVAERSEVGFP 596 Query 552 PSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAGIPADAPVIRML 611 P+V +AA+DG A + LL AA LPD ++LGPV LP G R+P + A V R+L Sbjct 597 PAVRLAAVDGAAEAIRDLLAAATLPD----GVEVLGPVPLPEGARKPFAGDSPAEVERVL 652 Query 612 LRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 LRV R G LA +L V R T ++ + +RVQIDP+ IG Sbjct 653 LRVDRRAGAALARALTAAQAV---RSTHRSDAPLRVQIDPVDIG 693 >gi|326382168|ref|ZP_08203860.1| primosome assembly protein PriA [Gordonia neofelifaecis NRRL B-59395] gi|326198898|gb|EGD56080.1| primosome assembly protein PriA [Gordonia neofelifaecis NRRL B-59395] Length=676 Score = 625 bits (1613), Expect = 6e-177, Method: Compositional matrix adjust. Identities = 373/656 (57%), Positives = 449/656 (69%), Gaps = 11/656 (1%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 ML + HLDR FDYLV A+ DDAQPGVRVRVRF GRLVDG++LER S+H GKL WLDR Sbjct 31 MLGLAHLDRPFDYLVDAKLDDDAQPGVRVRVRFAGRLVDGYLLERLDRSEHDGKLAWLDR 90 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVERE-ITTAPGRPVVAPVD 119 VVSPE VLT E+ L AVA RYAGT DVLRLA+P RHARVE+E ++ R +V P D Sbjct 91 VVSPEQVLTPELATLCRAVADRYAGTMADVLRLAIPPRHARVEKEAVSHDVARAIVVP-D 149 Query 120 PSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQ 179 +GW Y G+ F+ A RA WQALPGE A R AE AA AGR V+ +VPDQ Sbjct 150 RTGWDVYDSGQSFIDGAAGGGHPRACWQALPGEDVAARLAELAASVAAAGRGVVIVVPDQ 209 Query 180 RDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSEL 239 RDLD L A T L+ + + V+L AGLGP ARYRRWLA LRG AR+VIGTRSAVFAP+S+L Sbjct 210 RDLDRLEAACTPLLGD-ACVSLVAGLGPTARYRRWLAVLRGQARVVIGTRSAVFAPVSDL 268 Query 240 GLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHD 299 GLV+V+ D DDSL EPR+PYPH REV +LRAH A LIGG++RTAEA ALV SGWA D Sbjct 269 GLVVVFDDGDDSLDEPRSPYPHPREVGVLRAHGTGAALLIGGHSRTAEAQALVESGWAFD 328 Query 300 VVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPR 359 VVAPR VRA PR+ L D A DP AR+AR+P+IA AAR AL + VL VPR Sbjct 329 VVAPRAAVRAAMPRIDGLSDEDRRVANDPMARSARVPAIAFDAARKALAADQAVLFSVPR 388 Query 360 RGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLRCVRCGSDVVRAV 419 RGY+PS+AC RCRA RCR+C GPL + G CRWCGR + C C VRA+ Sbjct 389 RGYLPSVACARCRAHVRCRACNGPLQMNDRGD--LACRWCGRPENRFVCPACAGTAVRAL 446 Query 420 VVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLD 479 +VG RRTAEELGRAF G ++TS+GD +V ++ AG +V+ATPGA P APGGYGAA++LD Sbjct 447 MVGDRRTAEELGRAFRGVPIVTSSGDKIVDEVPAGARVVIATPGAAPHAPGGYGAAVVLD 506 Query 480 SWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAE 539 +WA L R+DLRAAE+A+ WM LVR R GG + +VA++S VQ+LIRWDPVG A Sbjct 507 TWAQLDREDLRAAEEAVRAWMAVGTLVRSREDGGRMVIVADASESPVQALIRWDPVGFAA 566 Query 540 AELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPA 599 EL+ R E+ PP+V +A++DGP V A L+ +P A+ LGPV LP GVRRPA Sbjct 567 IELSHRLELKFPPAVTMASVDGPPAAVAAFLDLLDMPP----GAETLGPVPLPAGVRRPA 622 Query 600 GIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 G+ P RMLLR R G LA +LR + +AR + +RVQ+DP IG Sbjct 623 GLDDSGPADRMLLRTPRVAGRALAEALRAAQALRNARH--DDTAGIRVQVDPPTIG 676 >gi|308276495|gb|ADO26394.1| ATP-dependent helicase priA [Corynebacterium pseudotuberculosis I19] gi|341824935|gb|AEK92456.1| Primosomal protein N [Corynebacterium pseudotuberculosis PAT10] Length=693 Score = 606 bits (1563), Expect = 4e-171, Method: Compositional matrix adjust. Identities = 328/665 (50%), Positives = 426/665 (65%), Gaps = 17/665 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L + HLDR F+YL+ + AQPGVRVRVRF GRLVD +LER S+ +H G+L WL+R Sbjct 36 LLGIAHLDRPFEYLIDSTQDAVAQPGVRVRVRFGGRLVDALLLERTSEQEHQGQLKWLER 95 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPV--VAPV 118 V+SPE V T E+R LVDA+A RYA D++R A+P+RHA+ E TT P + V Sbjct 96 VISPEQVFTPEMRELVDALAVRYAAITSDIIRAAIPSRHAKAEESETTRPWEELGQVEEP 155 Query 119 DPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 D S WA Y G+ F+ A+ +AARA WQ PG+ W+ A AA+ + G VL +VPD Sbjct 156 DLSAWATYVHGQSFVDAIISGKAARAAWQITPGDDWSAATAALAAKVAKDGGGVLIVVPD 215 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRD+D L QA V + L++ LGP+ARYRR+L+ L G +RLV+GTRSA FAP++ Sbjct 216 QRDVDKLEQALRRHVSAKQITVLTSALGPQARYRRFLSILHGQSRLVVGTRSAAFAPVAN 275 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 L L ++ D D++L++PRAPY HAREV R Q +C+ L+ G++RTAE LV SGWAH Sbjct 276 LALAIIKDDGDENLSDPRAPYTHAREVLTTRVSQRQCSLLLAGHSRTAETQLLVESGWAH 335 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 D+VA R +RA+ PR+ A+ DS RDP A AR+ S A +A RS LQ PVL+QVP Sbjct 336 DLVASRDRIRAQMPRIRAVADSNNALERDPLAFAARMSSTAFKALRSGLQREEPVLIQVP 395 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAV-----CRWCGRVDPTLRCVRCGS 413 R+GY+P+L+CG CRA ARCR C GPL L + CRWCGR D RC +CGS Sbjct 396 RKGYVPTLSCGTCRAPARCRHCNGPLELPSGSEMNGMGALPTCRWCGRPDSHYRCPQCGS 455 Query 414 DVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGG-Y 472 +RAVV+GA RTAEE+GRAFPG VITS G +V + PALVV+TPGAEP GG Y Sbjct 456 SKLRAVVLGAERTAEEIGRAFPGVQVITSGGQRVVDSIPHQPALVVSTPGAEPEVIGGRY 515 Query 473 GAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRW 532 G+A+ LD+WAL+GRQDLRA ED L +W AA LV P AGG V + ++S+P VQ+LIRW Sbjct 516 GSAVFLDAWALIGRQDLRAGEDTLAKWAAAATLVAPNDAGGEVVIAVDASLPQVQALIRW 575 Query 533 DPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLP 592 D VG A EL R EV PP+ H+AA+DG + A L LP ++LGPVDLP Sbjct 576 DMVGAAHRELLERREVHFPPAAHMAAIDGARTALDAFLSFTDLPP----HTEILGPVDLP 631 Query 593 PGVRRPAGIPAD--APVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQID 650 PG + P P R+L+R +L +LR G L R R+ +R+++D Sbjct 632 PGNKLPGEYDEREYGPPQRILIRTPLAGRNQLGQALRAG---LIERGARKEELPLRIKVD 688 Query 651 PLHIG 655 P+ +G Sbjct 689 PIKVG 693 >gi|300858541|ref|YP_003783524.1| primosomal protein N' [Corynebacterium pseudotuberculosis FRC41] gi|300685995|gb|ADK28917.1| primosomal protein N' [Corynebacterium pseudotuberculosis FRC41] gi|302206253|gb|ADL10595.1| Primosomal protein N [Corynebacterium pseudotuberculosis C231] gi|302330811|gb|ADL21005.1| Primosomal protein N [Corynebacterium pseudotuberculosis 1002] Length=681 Score = 606 bits (1563), Expect = 4e-171, Method: Compositional matrix adjust. Identities = 328/665 (50%), Positives = 426/665 (65%), Gaps = 17/665 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L + HLDR F+YL+ + AQPGVRVRVRF GRLVD +LER S+ +H G+L WL+R Sbjct 24 LLGIAHLDRPFEYLIDSTQDAVAQPGVRVRVRFGGRLVDALLLERTSEQEHQGQLKWLER 83 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPV--VAPV 118 V+SPE V T E+R LVDA+A RYA D++R A+P+RHA+ E TT P + V Sbjct 84 VISPEQVFTPEMRELVDALAVRYAAITSDIIRAAIPSRHAKAEESETTRPWEELGQVEEP 143 Query 119 DPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 D S WA Y G+ F+ A+ +AARA WQ PG+ W+ A AA+ + G VL +VPD Sbjct 144 DLSAWATYVHGQSFVDAIISGKAARAAWQITPGDDWSAATAALAAKVAKDGGGVLIVVPD 203 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRD+D L QA V + L++ LGP+ARYRR+L+ L G +RLV+GTRSA FAP++ Sbjct 204 QRDVDKLEQALRRHVSAKQITVLTSALGPQARYRRFLSILHGQSRLVVGTRSAAFAPVAN 263 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 L L ++ D D++L++PRAPY HAREV R Q +C+ L+ G++RTAE LV SGWAH Sbjct 264 LALAIIKDDGDENLSDPRAPYTHAREVLTTRVSQRQCSLLLAGHSRTAETQLLVESGWAH 323 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 D+VA R +RA+ PR+ A+ DS RDP A AR+ S A +A RS LQ PVL+QVP Sbjct 324 DLVASRDRIRAQMPRIRAVADSNNALERDPLAFAARMSSTAFKALRSGLQREEPVLIQVP 383 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAV-----CRWCGRVDPTLRCVRCGS 413 R+GY+P+L+CG CRA ARCR C GPL L + CRWCGR D RC +CGS Sbjct 384 RKGYVPTLSCGTCRAPARCRHCNGPLELPSGSEMNGMGALPTCRWCGRPDSHYRCPQCGS 443 Query 414 DVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGG-Y 472 +RAVV+GA RTAEE+GRAFPG VITS G +V + PALVV+TPGAEP GG Y Sbjct 444 SKLRAVVLGAERTAEEIGRAFPGVQVITSGGQRVVDSIPHQPALVVSTPGAEPEVIGGRY 503 Query 473 GAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRW 532 G+A+ LD+WAL+GRQDLRA ED L +W AA LV P AGG V + ++S+P VQ+LIRW Sbjct 504 GSAVFLDAWALIGRQDLRAGEDTLAKWAAAATLVAPNDAGGEVVIAVDASLPQVQALIRW 563 Query 533 DPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLP 592 D VG A EL R EV PP+ H+AA+DG + A L LP ++LGPVDLP Sbjct 564 DMVGAAHRELLERREVHFPPAAHMAAIDGARTALDAFLSFTDLPP----HTEILGPVDLP 619 Query 593 PGVRRPAGIPAD--APVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQID 650 PG + P P R+L+R +L +LR G L R R+ +R+++D Sbjct 620 PGNKLPGEYDEREYGPPQRILIRTPLAGRNQLGQALRAG---LIERGARKEELPLRIKVD 676 Query 651 PLHIG 655 P+ +G Sbjct 677 PIKVG 681 >gi|145295723|ref|YP_001138544.1| primosome assembly protein PriA [Corynebacterium glutamicum R] gi|140845643|dbj|BAF54642.1| hypothetical protein [Corynebacterium glutamicum R] Length=688 Score = 604 bits (1558), Expect = 1e-170, Method: Compositional matrix adjust. Identities = 332/677 (50%), Positives = 421/677 (63%), Gaps = 29/677 (4%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L +PHLDR FDY + + DD QPGVRVRVRF GRLVD V+ R + + H GKL WLDR Sbjct 19 LLGLPHLDRLFDYRISEDQHDDVQPGVRVRVRFGGRLVDAIVMSRTAQTSHEGKLMWLDR 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPV--VAPV 118 V+SP V + +L++ ++ RY G R D++R A+PARHA E T+ + V Sbjct 79 VISPIVVYPPQTAKLIEQLSDRYGGVRSDLIRSALPARHAGAEEADTSTSWESLGEVKEP 138 Query 119 DPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 D S W+AY G+ F+ A+ ARA WQ PG+ WA A A + V+ G L +VPD Sbjct 139 DLSSWSAYQHGQSFVDAVLAGTTARASWQIAPGDNWALALASLAVKVVKDGGGALLVVPD 198 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRDLD L A LV + L++GLGP+ARYRR+L+ L G RL+IGTRSA FAP+ + Sbjct 199 QRDLDRLEAALRGLVAAKQITVLNSGLGPQARYRRFLSVLSGQGRLIIGTRSAAFAPVKD 258 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 L L ++ D DD+L +PRAPY HAREV R+ + +I G+ARTAE LV SGW H Sbjct 259 LKLAVILNDGDDNLVDPRAPYAHAREVLTTRSSLEASSLIIAGHARTAETQLLVESGWMH 318 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 +++APR +R R PR+ A+ DS + RDP AR+ARLP IA A RSAL+ P L+QVP Sbjct 319 NLIAPRDTIRTRMPRIQAVGDSDFQMERDPMARSARLPGIAFHAVRSALERDQPALIQVP 378 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSL-QGAGSPGAV--CRWCGRVDPTLRCVRCGSDV 415 R+GY+P+LACG CRA ARCR C GP+ L QG+ V CRWCGR D +C CGS Sbjct 379 RKGYVPTLACGNCRAPARCRHCNGPVGLPQGSSDLAGVPTCRWCGRPDSRFKCQNCGSPK 438 Query 416 VRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAE---------- 465 +RAVV+G RTAEELGRAFP VITS G+ +V ++ ++VV+TPGAE Sbjct 439 LRAVVLGTERTAEELGRAFPSVRVITSGGNKVVDSVENRASIVVSTPGAEPYVANSPERP 498 Query 466 -----PRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAE 520 P G YGA LLLD+WAL+GRQDLRA EDAL +W AA LV G V VVA+ Sbjct 499 EKSEKPEHKGAYGALLLLDTWALMGRQDLRAMEDALHKWAAAATLVHSHLHQGQVIVVAD 558 Query 521 SSIPTVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDR 580 S P VQSLIRWD G A ELA+R EV PPSVH+AA+DG + + L+ A LPD Sbjct 559 PSFPAVQSLIRWDMAGAAAQELASRREVMFPPSVHMAAIDGATAALESFLDLAELPD--- 615 Query 581 LQADLLGPVDLPPGVRRPAGIPAD--APVIRMLLRVCREQGLELAASLRRGIGVLSARQT 638 A++LGPVDLPPGV P P R+L+R EL +LR AR Sbjct 616 -HAEVLGPVDLPPGVSLPGEYDEQRFGPPQRLLIRTPLGPRSELGRALR---SAQVARAV 671 Query 639 RQTRSLVRVQIDPLHIG 655 R+ +R+Q+DP+HIG Sbjct 672 RKNDLPLRIQMDPIHIG 688 >gi|344044951|gb|EGV40625.1| primosome assembly protein PriA [Corynebacterium glutamicum S9114] Length=688 Score = 603 bits (1554), Expect = 4e-170, Method: Compositional matrix adjust. Identities = 331/677 (49%), Positives = 420/677 (63%), Gaps = 29/677 (4%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L +PHLDR FDY + + DD QPGVRVRVRF GRLVD V+ R + + H GKL WLDR Sbjct 19 LLGLPHLDRLFDYRISEDQHDDVQPGVRVRVRFGGRLVDAIVMSRTAQTSHEGKLMWLDR 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPV--VAPV 118 V+SP V + +L++ ++ RY G R D++R A+PARHA E T+ + V Sbjct 79 VISPIVVYPPQTAKLIEQLSDRYGGVRSDLIRSALPARHAGAEEADTSTSWESLGEVKEP 138 Query 119 DPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 D S W+AY G+ F+ A+ ARA WQ PG+ WA A A + V+ G L +VPD Sbjct 139 DLSSWSAYQHGQSFVDAVLAGTTARASWQIAPGDNWALALASLAVKVVKDGGGALLVVPD 198 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRDLD L A LV + L++GLGP+ARYRR+L+ L G RL+IGTRSA FAP+ + Sbjct 199 QRDLDRLEAALRGLVAAKQITVLNSGLGPQARYRRFLSVLSGQGRLIIGTRSAAFAPVKD 258 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 L L ++ D DD+L +PRAPY HAREV R+ + +I G+ARTAE LV SGW H Sbjct 259 LKLAVILNDGDDNLVDPRAPYAHAREVLTTRSSLEASSLIIAGHARTAETQLLVESGWMH 318 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 +++APR +R R PR+ A+ DS + RDP AR+ARLP IA A RSAL+ P L+QVP Sbjct 319 NLIAPRDTIRTRMPRIQAVGDSDFQMERDPMARSARLPGIAFHAVRSALERDQPALIQVP 378 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSL-QGAGSPGAV--CRWCGRVDPTLRCVRCGSDV 415 R+GY+P+LACG CR ARCR C GP L QG+ + V CRWCGR D +C CGS Sbjct 379 RKGYVPTLACGNCRTPARCRHCNGPAGLPQGSSNLAGVPTCRWCGRPDSRFKCQNCGSPK 438 Query 416 VRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAE---------- 465 +RAVV+G RTAEELGRAFP VITS G+ +V ++ ++VV+TPGAE Sbjct 439 LRAVVLGTERTAEELGRAFPSVRVITSGGNKVVDSVENRASIVVSTPGAEPYVANSPERP 498 Query 466 -----PRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAE 520 P G YGA LLLD+WAL+GRQDLRA EDAL +W AA LV G V VVA+ Sbjct 499 EKSEKPEHKGAYGALLLLDTWALMGRQDLRAMEDALHKWAAAATLVHSHLHQGQVIVVAD 558 Query 521 SSIPTVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDR 580 S P VQSLIRWD G A ELA+R EV PPSVH+AA+DG + + L+ A LPD Sbjct 559 PSFPAVQSLIRWDMAGAAAQELASRREVMFPPSVHMAAIDGATAALESFLDLAELPD--- 615 Query 581 LQADLLGPVDLPPGVRRPAGIPAD--APVIRMLLRVCREQGLELAASLRRGIGVLSARQT 638 A++LGPVDLPPGV P P R+L+R EL +LR AR Sbjct 616 -HAEVLGPVDLPPGVSLPGEYDEQRFGPPQRLLIRTPLGPRSELGRALR---SAQVARAV 671 Query 639 RQTRSLVRVQIDPLHIG 655 R+ +R+Q+DP+HIG Sbjct 672 RKNDLPLRIQMDPIHIG 688 >gi|19552814|ref|NP_600816.1| primosome assembly protein PriA [Corynebacterium glutamicum ATCC 13032] gi|62390484|ref|YP_225886.1| primosome assembly protein PriA [Corynebacterium glutamicum ATCC 13032] gi|21324371|dbj|BAB98995.1| Primosomal protein N' (replication factor Y) - superfamily II helicase [Corynebacterium glutamicum ATCC 13032] gi|41325821|emb|CAF21610.1| Primosomal protein N' (replication factor Y)-superfamily II helicase [Corynebacterium glutamicum ATCC 13032] Length=688 Score = 603 bits (1554), Expect = 4e-170, Method: Compositional matrix adjust. Identities = 331/677 (49%), Positives = 420/677 (63%), Gaps = 29/677 (4%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L +PHLDR FDY + + DD QPGVRVRVRF GRLVD V+ R + + H GKL WLDR Sbjct 19 LLGLPHLDRLFDYRISEDQHDDVQPGVRVRVRFGGRLVDAIVMSRTAQTSHEGKLMWLDR 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPV--VAPV 118 V+SP V + +L++ ++ RY G R D++R A+PARHA E T+ + V Sbjct 79 VISPIVVYPPQTAKLIEQLSDRYGGVRSDLIRSALPARHAGAEEADTSTSWESLGEVKEP 138 Query 119 DPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 D S W+AY G+ F+ A+ ARA WQ PG+ WA A A + V+ G L +VPD Sbjct 139 DLSSWSAYQHGQSFVDAVLAGTTARASWQIAPGDDWALALASLAVKVVKDGGGALLVVPD 198 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRDLD L A LV + L++GLGP+ARYRR+L+ L G RL+IGTRSA FAP+ + Sbjct 199 QRDLDRLEAALRGLVAAKQITVLNSGLGPQARYRRFLSVLSGQGRLIIGTRSAAFAPVKD 258 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 L L ++ D DD+L +PRAPY HAREV R+ + +I G+ARTAE LV SGW H Sbjct 259 LKLAVILNDGDDNLVDPRAPYAHAREVLTTRSSLEASSLIIAGHARTAETQLLVESGWMH 318 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 +++APR +R R PR+ A+ DS + RDP AR+ARLP IA A RSAL+ P L+QVP Sbjct 319 NLIAPRDTIRTRMPRIQAVGDSDFQMERDPMARSARLPGIAFHAVRSALERDQPALIQVP 378 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSL-QGAGSPGAV--CRWCGRVDPTLRCVRCGSDV 415 R+GY+P+LACG CR ARCR C GP+ L QG+ V CRWCGR D +C CGS Sbjct 379 RKGYVPTLACGNCRTPARCRHCNGPVGLPQGSSDLAGVPTCRWCGRPDSRFKCQNCGSPK 438 Query 416 VRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAE---------- 465 +RAVV+G RTAEELGRAFP VITS G+ +V ++ ++VV+TPGAE Sbjct 439 LRAVVLGTERTAEELGRAFPSVRVITSGGNKVVDSVENRASIVVSTPGAEPFVANSPERP 498 Query 466 -----PRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAE 520 P G YGA LLLD+WAL+GRQDLRA EDAL +W AA LV G V VVA+ Sbjct 499 EKSEKPEHKGAYGALLLLDTWALMGRQDLRAMEDALHKWAAAATLVHSHLHQGQVIVVAD 558 Query 521 SSIPTVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDR 580 S P VQSLIRWD G A ELA+R EV PPSVH+AA+DG + + L+ A LPD Sbjct 559 PSFPAVQSLIRWDMAGAAAQELASRREVMFPPSVHMAAIDGATAALESFLDLAELPD--- 615 Query 581 LQADLLGPVDLPPGVRRPAGIPAD--APVIRMLLRVCREQGLELAASLRRGIGVLSARQT 638 A++LGPVDLPPGV P P R+L+R EL +LR AR Sbjct 616 -HAEVLGPVDLPPGVSLPGEYDEQRFGPPQRLLIRTPLGPRSELGRALR---SAQVARAV 671 Query 639 RQTRSLVRVQIDPLHIG 655 R+ +R+Q+DP+HIG Sbjct 672 RKNDLPLRIQMDPIHIG 688 >gi|334696959|gb|AEG81756.1| primosomal protein N' [Corynebacterium ulcerans 809] Length=681 Score = 602 bits (1553), Expect = 6e-170, Method: Compositional matrix adjust. Identities = 326/665 (50%), Positives = 424/665 (64%), Gaps = 17/665 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L + HLDR F+YL+ + AQPGVRVRVRF GRLVD +LER SD +H G+L WL+R Sbjct 24 LLGIAHLDRPFEYLIDSTQDAIAQPGVRVRVRFGGRLVDALLLERTSDQEHEGQLKWLER 83 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPV--VAPV 118 V+SPE V T E+R+LVDA+A RYA D++R A+P+RHA+ E T P V Sbjct 84 VISPEKVFTPEMRKLVDALAVRYAAVTSDLIRAALPSRHAKAEESDTAQPWEDFGEVEEP 143 Query 119 DPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 D S WA Y G+ F+ A+ + ARA WQ PG+ W+ A AA+ + G VL +VPD Sbjct 144 DLSAWATYVHGQSFVDAIISGKTARAAWQITPGDDWSAAIAALAAKVAKDGGGVLIVVPD 203 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRD+D + QA V + L++ LGP+ARYRR+L+ L G RLVIGTRSA FAP++ Sbjct 204 QRDVDKMEQALRNHVSAKHITVLTSALGPQARYRRFLSILHGQGRLVIGTRSAAFAPVAN 263 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 L L ++ D D++L++PRAPY HAREV R Q +C+ LI G++RTAE LV SGWAH Sbjct 264 LALAIIKDDGDENLSDPRAPYVHAREVLTTRVSQQQCSLLIAGHSRTAETQLLVESGWAH 323 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 D+VA R +RA+ PR+ A+ DS RDP A +AR+ S A +A R+ LQ PVL+QVP Sbjct 324 DLVASRDRIRAQMPRIRAIADSNNALERDPLAFSARMSSTAFQALRAGLQREEPVLIQVP 383 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAV-----CRWCGRVDPTLRCVRCGS 413 R+GY+P+L+CG CR+ ARCR C GPL L + CRWCGR D RC +CGS Sbjct 384 RKGYVPTLSCGTCRSPARCRHCNGPLELPSGSEMNGMGALPTCRWCGRPDSHYRCPQCGS 443 Query 414 DVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGG-Y 472 +RAVV+GA RTAEE+GRAFPG VITS G ++ + PALVV+TPGAEP G Y Sbjct 444 SKLRAVVLGAERTAEEIGRAFPGVKVITSGGQRVIDWVPNEPALVVSTPGAEPNVMAGRY 503 Query 473 GAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRW 532 GAA+ LD+WAL+GRQDLRA ED L +W AA LV P GG V + A++S+P VQ+LIRW Sbjct 504 GAAVFLDAWALIGRQDLRAGEDTLAKWAAAATLVAPHDVGGEVIIAADASLPQVQALIRW 563 Query 533 DPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLP 592 D VG A EL R EV PP+ H+AA+DG + A L LP A++LGPVDLP Sbjct 564 DMVGAAHRELLERREVHFPPAAHMAAIDGARTALDAFLSFTHLPP----HAEILGPVDLP 619 Query 593 PGVRRPAGIPAD--APVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQID 650 PG + P P R+L+R +L +LR G L R R+ +R+++D Sbjct 620 PGSKLPGEYDEREYGPPQRILIRTPLAGRNQLGQALRAG---LIERGARKEELPLRIKVD 676 Query 651 PLHIG 655 P+ +G Sbjct 677 PIKVG 681 >gi|289446998|ref|ZP_06436742.1| primosome assembly protein PriA [Mycobacterium tuberculosis CPHL_A] gi|289419956|gb|EFD17157.1| primosome assembly protein PriA [Mycobacterium tuberculosis CPHL_A] Length=321 Score = 599 bits (1544), Expect = 6e-169, Method: Compositional matrix adjust. Identities = 314/314 (100%), Positives = 314/314 (100%), Gaps = 0/314 (0%) Query 342 AARSALQSGAPVLVQVPRRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGR 401 AARSALQSGAPVLVQVPRRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGR Sbjct 8 AARSALQSGAPVLVQVPRRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGR 67 Query 402 VDPTLRCVRCGSDVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVAT 461 VDPTLRCVRCGSDVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVAT Sbjct 68 VDPTLRCVRCGSDVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVAT 127 Query 462 PGAEPRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAES 521 PGAEPRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAES Sbjct 128 PGAEPRAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAES 187 Query 522 SIPTVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRL 581 SIPTVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRL Sbjct 188 SIPTVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRL 247 Query 582 QADLLGPVDLPPGVRRPAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQT 641 QADLLGPVDLPPGVRRPAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQT Sbjct 248 QADLLGPVDLPPGVRRPAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQT 307 Query 642 RSLVRVQIDPLHIG 655 RSLVRVQIDPLHIG Sbjct 308 RSLVRVQIDPLHIG 321 >gi|337290845|ref|YP_004629866.1| primosomal protein N' [Corynebacterium ulcerans BR-AD22] gi|334699151|gb|AEG83947.1| primosomal protein N' [Corynebacterium ulcerans BR-AD22] Length=681 Score = 599 bits (1544), Expect = 6e-169, Method: Compositional matrix adjust. Identities = 325/665 (49%), Positives = 423/665 (64%), Gaps = 17/665 (2%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L + HLDR F+YL+ + AQPGVRVRVRF GRLVD +LER SD +H G+L WL+R Sbjct 24 LLGIAHLDRPFEYLIDSTQDAIAQPGVRVRVRFGGRLVDALLLERTSDQEHEGQLKWLER 83 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPV--VAPV 118 V+SPE V T E+R+LVDA+A RYA D++R A+P+RHA+ E T P V Sbjct 84 VISPEKVFTPEMRKLVDALAVRYAAVTSDLIRAALPSRHAKAEESDTAQPWEDFGEVEEP 143 Query 119 DPSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 D S WA Y G+ F+ A+ + ARA WQ PG+ W+ A AA+ + G VL +VPD Sbjct 144 DLSAWATYVHGQSFVDAIISGKTARAAWQITPGDDWSAAIAALAAKVAKDGGGVLIVVPD 203 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRD+D + QA V + L++ LGP+ARYRR+L+ L G RLVIGTRSA FAP++ Sbjct 204 QRDVDKMEQALRNHVSAKHITVLTSALGPQARYRRFLSILHGQGRLVIGTRSAAFAPVAN 263 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 L L ++ D D++L++PRAPY HAREV R Q +C+ LI G++RTAE LV SGWAH Sbjct 264 LALAIIKDDGDENLSDPRAPYVHAREVLTTRVSQQQCSLLIAGHSRTAETQLLVESGWAH 323 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 D+VA R +RA+ PR+ A+ DS RDP A +AR+ S A +A R+ LQ PVL+QVP Sbjct 324 DLVASRDRIRAQMPRIRAIADSNNALERDPLAFSARMSSTAFQALRAGLQREEPVLIQVP 383 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAV-----CRWCGRVDPTLRCVRCGS 413 R+GY+P+L+CG CR+ ARCR C GPL L + CRWCGR D RC +CGS Sbjct 384 RKGYVPTLSCGTCRSPARCRHCNGPLELPSGSEMNGMGALPTCRWCGRPDSHYRCPQCGS 443 Query 414 DVVRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGG-Y 472 +RAVV+GA RTAEE+GRAFPG VITS G ++ + PALVV+TPGAEP G Y Sbjct 444 SKLRAVVLGAERTAEEIGRAFPGVKVITSGGQRVIDWVPNEPALVVSTPGAEPNVMAGRY 503 Query 473 GAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRW 532 GAA+ LD+WAL+GRQDLRA ED L +W AA LV P GG V + A++S+ VQ+LIRW Sbjct 504 GAAVFLDAWALIGRQDLRAGEDTLAKWAAAATLVAPHDVGGEVIIAADASLSQVQALIRW 563 Query 533 DPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLP 592 D VG A EL R EV PP+ H+AA+DG + A L LP A++LGPVDLP Sbjct 564 DMVGAAHRELLERREVHFPPAAHMAAIDGARTALDAFLSFTHLPP----HAEILGPVDLP 619 Query 593 PGVRRPAGIPAD--APVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQID 650 PG + P P R+L+R +L +LR G L R R+ +R+++D Sbjct 620 PGSKLPGEYDEREYGPPQRILIRTPLAGRNQLGQALRAG---LIERGARKEELPLRIKVD 676 Query 651 PLHIG 655 P+ +G Sbjct 677 PIKVG 681 >gi|25028278|ref|NP_738332.1| primosome assembly protein PriA [Corynebacterium efficiens YS-314] gi|259507336|ref|ZP_05750236.1| primosomal protein N' [Corynebacterium efficiens YS-314] gi|23493562|dbj|BAC18532.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165047|gb|EEW49601.1| primosomal protein N' [Corynebacterium efficiens YS-314] Length=685 Score = 591 bits (1524), Expect = 1e-166, Method: Compositional matrix adjust. Identities = 332/674 (50%), Positives = 427/674 (64%), Gaps = 26/674 (3%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L +PHLDR FDY + A+ +DA+PGVRVR+RF GRLVD +++R +DH G+L WLDR Sbjct 19 LLGLPHLDRLFDYRISADQHEDARPGVRVRIRFGGRLVDAILIDRTGHTDHAGELAWLDR 78 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 V+SP V + RL++++ RY G R D++R A+P RHA E + P + A +P Sbjct 79 VISPVVVYPEQTARLIESLTDRYGGVRSDLIRSAIPTRHAGAEDSDISTPWHDLGAVTEP 138 Query 121 --SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 S W+AY G+ F+ A+ ARA WQ PG+ WA A A + V+ G L +VPD Sbjct 139 DLSSWSAYQYGQSFVDAVLAGTTARAAWQIAPGDDWALAVASLAVKVVKDGGGALIVVPD 198 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 QRD+D L A ALV V L++GLGP+ARYRR+L+ L G RLV+GTRSA FAP+++ Sbjct 199 QRDVDKLEAALRALVAAKQVTVLNSGLGPQARYRRFLSVLSGQGRLVVGTRSAAFAPVAD 258 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 L L ++ D DD+L +PRAPY HAREV R+ + +IGG+ RTAE LV +GWAH Sbjct 259 LKLTVILGDGDDNLVDPRAPYVHAREVLTTRSALEGSSLIIGGHTRTAETQLLVEAGWAH 318 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 D+VAPR +R R PR+ A+ DS ++ RDP AR+ARLP +A RA R L PVL+QVP Sbjct 319 DLVAPRETIRTRMPRIQAVGDSDFELERDPLARSARLPGLAFRAVRDTLSRNEPVLIQVP 378 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGA---VCRWCGRVDPTLRCVRCGSDV 415 R+GY+P+LACG CR ARCR C GP+ L + A CRWCGR D RC CGS Sbjct 379 RKGYVPTLACGNCRTPARCRHCNGPVGLPQSDQHQAAVPTCRWCGRPDTRFRCQACGSPK 438 Query 416 VRAVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEP--------- 466 +RAVV+GA RTAEELGRAFP T +ITS G+ +V +D +VV+TPGAEP Sbjct 439 LRAVVLGAERTAEELGRAFPSTRIITSGGNRVVDHIDYRACIVVSTPGAEPAVHTGVDCY 498 Query 467 ---RAPGGYGAALLLDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSI 523 + G YGA LLLD+WAL+GRQDLRA ED L +W AA LV GG V VVA+ S+ Sbjct 499 SGDTSRGAYGACLLLDTWALMGRQDLRATEDTLQKWAAAATLVHSHIHGGHVVVVADPSL 558 Query 524 PTVQSLIRWDPVGHAEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQA 583 VQSLIRWD VG A +ELA+R EV PP+VH+AA+DG A + + +E LP A Sbjct 559 AVVQSLIRWDMVGAAASELASRREVRFPPAVHMAAIDGAAAALDSFVELVELP----AHA 614 Query 584 DLLGPVDLPPGVRRPAGIPAD--APVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQT 641 ++LGPVDLPPGV P P RML+R EL +LR AR R+ Sbjct 615 EVLGPVDLPPGVTLPGEYDEARFGPPQRMLIRTPLGPRSELGRALR---SAQVARAARKN 671 Query 642 RSLVRVQIDPLHIG 655 +RVQ+DP+HIG Sbjct 672 DLPLRVQMDPIHIG 685 >gi|296140273|ref|YP_003647516.1| primosomal protein N' [Tsukamurella paurometabola DSM 20162] gi|296028407|gb|ADG79177.1| primosomal protein N' [Tsukamurella paurometabola DSM 20162] Length=657 Score = 590 bits (1520), Expect = 4e-166, Method: Compositional matrix adjust. Identities = 378/658 (58%), Positives = 443/658 (68%), Gaps = 21/658 (3%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L V HLDR+FDYLVP E DAQPGVRVRVRF GRLVDG++LER SDH GKL LDR Sbjct 18 LLQVSHLDREFDYLVPPEFDADAQPGVRVRVRFSGRLVDGYLLERLPRSDHDGKLARLDR 77 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREI-TTAPGRPVVAPVD 119 VVSP PVLT + RLV VA RYAGTR DVLRLA+P RHARVE+++ P P P Sbjct 78 VVSPLPVLTPPVLRLVTEVATRYAGTRADVLRLAIPPRHARVEKDLLKAEPPAPPEPPEV 137 Query 120 PSGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQ 179 + A Y G QF+AA RA AVWQALPGE WA R AE AA + +GR+ L +VPDQ Sbjct 138 VAALAEYTHGEQFVAAALAGRAPHAVWQALPGEDWAARLAELAAAVIESGRSALLVVPDQ 197 Query 180 RDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSEL 239 DLD L A A D V L+AGLGP ARYRRWL AL G LVIGTRSA F PL+ Sbjct 198 ADLDRL---AAACADLKPTV-LAAGLGPSARYRRWLTALLGRTSLVIGTRSAAFVPLANP 253 Query 240 GLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHD 299 GL+++W D D+S EPRAPYPH REV LRAHQ A +IGG+ART EA AL+ +GWA + Sbjct 254 GLLVLWDDGDESFVEPRAPYPHTREVLALRAHQEGAALVIGGFARTPEAQALLDAGWAAE 313 Query 300 VVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPR 359 V APR VR RSPR++ + DS ++ ARDP AR+ARLP+ A AAR+AL + PVLVQVPR Sbjct 314 VTAPRERVRERSPRIIGVADSDFELARDPLARSARLPAAAFAAARAALDAERPVLVQVPR 373 Query 360 RGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAV-CRWCGRVDPTLRCVRCGSDVVRA 418 RGY P+++C RCR ARCR C GPL Q AG G + CRWC R D RC CG +RA Sbjct 374 RGYAPAMSCERCRTPARCRRCHGPLE-QAAG--GVLRCRWCDRPDAGYRCPACGGTTMRA 430 Query 419 VVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLL 478 V+VGA RTAEELGRAFPG AV S G+ ++ ++ G LVVATPGAEP GYGAALLL Sbjct 431 VIVGASRTAEELGRAFPGAAVTMSGGEHVLAEVPGGRRLVVATPGAEPVVEHGYGAALLL 490 Query 479 DSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHA 538 D W LLGR DLRA E+ + RWM AAALV A G V A++SIP VQ+LIRWD G A Sbjct 491 DGWLLLGRADLRAGEETVRRWMNAAALV---AADGTVVCGADASIPAVQALIRWDAAGFA 547 Query 539 EAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRP 598 +ELA R VG PP+ H+AALDG V A+ E A LP A++LGPV LPPGVR P Sbjct 548 ASELAERAVVGFPPAAHLAALDGAESDVVAVAETAELPP----GAEILGPVGLPPGVRVP 603 Query 599 AGIPADAPVIRMLLRVCREQGLELA-ASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 +P +R+L+RV R G LA A R +G R R+ S VR+Q+DPL IG Sbjct 604 GAPDEGSPPMRVLIRVPRRDGRALAQAVFRAQVG----RSLRREGSPVRIQMDPLRIG 657 >gi|302525876|ref|ZP_07278218.1| primosomal protein N [Streptomyces sp. AA4] gi|302434771|gb|EFL06587.1| primosomal protein N [Streptomyces sp. AA4] Length=700 Score = 587 bits (1514), Expect = 2e-165, Method: Compositional matrix adjust. Identities = 345/653 (53%), Positives = 428/653 (66%), Gaps = 18/653 (2%) Query 6 HLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDRVVSPE 65 HLDR FDY VP + + A PG RVRVRF G+LVDG+++ER +D+ KL +L+RV S E Sbjct 61 HLDRTFDYQVPEKLHESAVPGCRVRVRFAGQLVDGYLIERTDTTDYERKLAYLERVTSSE 120 Query 66 PVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDPSGWAA 125 PVL + + +VA RYAGT DVLRLA+P RHA+VE E P A D S W+ Sbjct 121 PVLPPSLHAVCRSVADRYAGTLSDVLRLALPPRHAKVEAEPPAEPAPAPEA-PDVSAWSR 179 Query 126 YGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQRDLDTL 185 Y RG FL A+A+SR A AVWQALPGE W R AEAAA GR + +VPD RDL + Sbjct 180 YQRGEAFLEAIAESRQANAVWQALPGEDWPRRLAEAAATAAAQGRGAVLVVPDHRDLTRV 239 Query 186 WQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELGLVMVW 245 +A LV E V AL AGLGP RYRRWL+ LRG+ R+V+GTR+A+FAP+++ GL +VW Sbjct 240 HEACIELVGEQGVAALIAGLGPAERYRRWLSVLRGAVRVVVGTRAAMFAPVADPGLFVVW 299 Query 246 ADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDVVAPRP 305 D DD +P APYPH R+V M RAH + A L+GG+ARTAEA LV SGWA + A R Sbjct 300 DDGDDLHLDPHAPYPHVRDVLMDRAHATKSAFLVGGFARTAEAQLLVESGWAQQIQADRT 359 Query 306 EVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRRGYIPS 365 E+RA +PRV + + +D ARD AAR ARLP++A AAR A +G P LVQVPRRGY+P Sbjct 360 ELRAAAPRVTPVGED-FDIARDEAARVARLPAVAFEAARQAFAAGLPALVQVPRRGYVPG 418 Query 366 LACGRCRAIARCRSCTGPLSLQGAGSPGA----VCRWCGRVDPTLRCVRCGSDVVRAVVV 421 L+CG+CR A CR C GPL+L G + GA CRWCG + RC CGS +RAVVV Sbjct 419 LSCGQCRTPAHCRRCAGPLALPGGSADGAPRPPACRWCGVPETAFRCPACGSVRLRAVVV 478 Query 422 GARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDSW 481 GA+RTAEELGRAFPG V TS ++ + PALVV TPGAEP A GGYGAALLLD W Sbjct 479 GAKRTAEELGRAFPGVPVRTSGAAEVLATVPGRPALVVCTPGAEPVAEGGYGAALLLDGW 538 Query 482 ALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEAE 541 ALLGRQDLRAAE+ L RWM A ALVRP +GG V V AE+ + VQ+L+RWDP HA E Sbjct 539 ALLGRQDLRAAEETLRRWMAAGALVRPASSGGRVIVGAEAGLAVVQALVRWDPGWHASQE 598 Query 542 LAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAGI 601 L R E+G PP++ +A+++G V ++L+ LPD ++LGPV L G G Sbjct 599 LEQRRELGFPPAMRMASVEGSPAAVASVLDDLPLPD----SGEVLGPVPL--GDYDDEG- 651 Query 602 PADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHI 654 +A R L+RV R G LAA +R + + R R+ VRVQ+DPL + Sbjct 652 --NAERERALVRVARPDGRALAAVVRDAV---ARRDARKAVEPVRVQLDPLDL 699 >gi|298256330|gb|ADI71439.1| putative primosomal protein N' [Amycolatopsis orientalis subsp. vinearia] Length=698 Score = 586 bits (1511), Expect = 4e-165, Method: Compositional matrix adjust. Identities = 350/653 (54%), Positives = 424/653 (65%), Gaps = 18/653 (2%) Query 6 HLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDRVVSPE 65 HLDR FDYLVP + + A PG RVRVRF G+LVDG+++ER S++ KL +LDRV SPE Sbjct 59 HLDRTFDYLVPEKLHETAVPGCRVRVRFAGQLVDGYLIERGESSEYERKLAFLDRVTSPE 118 Query 66 PVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDPSGWAA 125 PVL + L AVA RY GT DVLRLA+P RHA+ E E AP P A D WA Sbjct 119 PVLPPSLHALCRAVADRYGGTLSDVLRLAIPPRHAKAEGEPPLAPAAPPEA-PDTEAWAR 177 Query 126 YGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPDQRDLDTL 185 Y RG FL ALA+ + A AVWQALPGE W R AEAA GR + +VPD RDL + Sbjct 178 YQRGPAFLEALAEGKPANAVWQALPGEDWPRRLAEAAGSVAARGRGAVLVVPDHRDLTRV 237 Query 186 WQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSELGLVMVW 245 A AL+ E +VVAL AGLGP RYRRWLA LRGS R+V+GTR+A+FAP+ + GL +VW Sbjct 238 HDACAALLGEAAVVALIAGLGPAERYRRWLAVLRGSVRVVVGTRAAMFAPVHDPGLFVVW 297 Query 246 ADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAHDVVAPRP 305 D DD + APYPH R+V M RAH + + L+GG+ARTAEA LV SGWA V+A R Sbjct 298 DDGDDLHLDQHAPYPHVRDVLMDRAHTTKSSLLVGGFARTAEAQLLVESGWAQPVLADRA 357 Query 306 EVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVPRRGYIPS 365 +R+ +PRV + + +D ARD AAR ARLP++A AAR A +G P LVQVPRRGY+P Sbjct 358 TLRSAAPRVTPVGED-FDVARDEAARVARLPAVAFEAARQAFAAGHPTLVQVPRRGYVPG 416 Query 366 LACGRCRAIARCRSCTGPLSLQGAGSPGA----VCRWCGRVDPTLRCVRCGSDVVRAVVV 421 LACG CR A CR C GPLSL G G CRWCG + RC CGS +RAV+V Sbjct 417 LACGNCRTPAHCRRCAGPLSLPGGSIDGQPKPPACRWCGVPETAFRCPACGSVRLRAVIV 476 Query 422 GARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALLLDSW 481 GA+RTAEELGRAFPG V TS ++ + PALVV TPGAEP A GGYGAALLLD W Sbjct 477 GAKRTAEELGRAFPGIPVRTSGAAEVLASVPGKPALVVCTPGAEPVAEGGYGAALLLDGW 536 Query 482 ALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGHAEAE 541 ALLGRQDLRA E+ L RWM AAALVRP GG V V AE+ +P VQ+L+RWDP HA E Sbjct 537 ALLGRQDLRAGEETLRRWMAAAALVRPSAEGGRVVVGAEAGLPVVQALVRWDPAWHAGQE 596 Query 542 LAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRRPAGI 601 LA R E+G PPS+ +A+++G V LL A LP P+ ++LGPV L G G Sbjct 597 LAERRELGFPPSMRMASVEGTPDAVAGLL--ADLPLPE--SGEVLGPVPL--GEVDEEG- 649 Query 602 PADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHI 654 + R L+RV R +G LAAS+ AR+ + +R+Q+DPL + Sbjct 650 --NVERERALVRVSRSEGKALAASIHAAAARRDARKATEP---IRIQLDPLDL 697 >gi|300781119|ref|ZP_07090973.1| DNA replication factor Y [Corynebacterium genitalium ATCC 33030] gi|300532826|gb|EFK53887.1| DNA replication factor Y [Corynebacterium genitalium ATCC 33030] Length=677 Score = 581 bits (1497), Expect = 2e-163, Method: Compositional matrix adjust. Identities = 329/658 (50%), Positives = 419/658 (64%), Gaps = 23/658 (3%) Query 1 MLSVPHLDRDFDYLVPAEHSDDAQPGVRVRVRFHGRLVDGFVLERRSDSDHHGKLGWLDR 60 +L +PHLDR FDYLV S+ AQPGVRVR+RF GRLVD VLER + SDH GKL +++R Sbjct 40 LLGLPHLDRPFDYLVAESDSEAAQPGVRVRIRFAGRLVDALVLERAATSDHEGKLRFIER 99 Query 61 VVSPEPVLTTEIRRLVDAVAARYAGTRQDVLRLAVPARHARVEREITTAPGRPVVAPVDP 120 VVSPE V +R L+DA+A RYA TR D++R A+P RH + E TT + +P Sbjct 100 VVSPEVVYPERMRLLIDALADRYAATRSDLIRTAIPPRHTKAEETDTTTAWEELGEAAEP 159 Query 121 --SGWAAYGRGRQFLAALADSRAARAVWQALPGELWADRFAEAAAQTVRAGRTVLAIVPD 178 S W+AY G F+ A+ ARA WQ PG+ WA A A + + G VL +VPD Sbjct 160 DLSAWSAYEHGESFVDAVIGGTLARAAWQIAPGDDWAAALAALATKVAKDGGGVLIVVPD 219 Query 179 QRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRSAVFAPLSE 238 Q D+DT+ A LV + L+A LGP+ARY R+L+ L G R+V+GTRSA FAP+ + Sbjct 220 QTDVDTVDVALRELVGPRQITTLTASLGPQARYSRFLSVLHGQGRIVVGTRSAGFAPVEK 279 Query 239 LGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHALVRSGWAH 298 L L +V D DDSL +PRAPY HAREV R+ + + +IGG+ARTAE LV SGWAH Sbjct 280 LQLAVVMFDGDDSLVDPRAPYTHAREVLTTRSAIEKASLIIGGHARTAETQLLVESGWAH 339 Query 299 DVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSGAPVLVQVP 358 D+VAPR VRARSP + A DS + +DP A AR+PS+A AAR AL + PVL QVP Sbjct 340 DLVAPRATVRARSPFIHAAGDSDFALEKDPRAAAARIPSVAFEAARKALAADKPVLFQVP 399 Query 359 RRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGA-VCRWCGRVDPTLRCVRCGSDVVR 417 R GY+ SLACG CR ARCR+C GPL L G A CRWCGR+D + C CGS +R Sbjct 400 RTGYVQSLACGNCREPARCRACNGPLGLPSGGEAAAPTCRWCGRMDSSYVCPVCGSHRLR 459 Query 418 AVVVGARRTAEELGRAFPGTAVITSAGDTLVPQLDAGPALVVATPGAEPRAPGGYGAALL 477 AVV+G +RTAEELGRAF VI S G+ ++ ++ GPA+VVATPGAEPRA GGYGAA+L Sbjct 460 AVVLGTQRTAEELGRAFAPAKVIMSWGEKILKEVPGGPAIVVATPGAEPRASGGYGAAVL 519 Query 478 LDSWALLGRQDLRAAEDALWRWMTAAALVRPRGAGGVVTVVAESSIPTVQSLIRWDPVGH 537 LD+WALLGR D+RA+E+AL +WM AA LV +G V VVA+ ++P VQ LIRWD G+ Sbjct 520 LDTWALLGRPDMRASEEALAKWMGAAGLVDKQGD---VVVVADPALPVVQHLIRWDAPGY 576 Query 538 AEAELAARTEVGLPPSVHIAALDGPAGTVTALLEAARLPDPDRLQADLLGPVDLPPGVRR 597 A EL AR EV PP+VH+AA+D P ++T L LP A++LGPVDL + Sbjct 577 AAHELEARREVRFPPAVHMAAVDSPRESLTDFLAHIDLPP----HAEVLGPVDLADETYQ 632 Query 598 PAGIPADAPVIRMLLRVCREQGLELAASLRRGIGVLSARQTRQTRSLVRVQIDPLHIG 655 R+L+R L +LR R TR+ +R+ ++P+ IG Sbjct 633 Q----------RVLIRAPLSTRTALGKALR---AANVNRATRKQEVPLRITVNPMDIG 677 Lambda K H 0.322 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1525141620640 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40