BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1407 Length=457 Score E Sequences producing significant alignments: (Bits) Value gi|289745158|ref|ZP_06504536.1| sun protein [Mycobacterium tuber... 888 0.0 gi|15608545|ref|NP_215923.1| Fmu protein (SUN protein) [Mycobact... 885 0.0 gi|31792601|ref|NP_855094.1| Fmu protein (SUN protein) [Mycobact... 883 0.0 gi|339631474|ref|YP_004723116.1| FMU protein (SUN protein) [Myco... 882 0.0 gi|306784137|ref|ZP_07422459.1| SUN protein [Mycobacterium tuber... 881 0.0 gi|183982229|ref|YP_001850520.1| Fmu protein [Mycobacterium mari... 720 0.0 gi|118617418|ref|YP_905750.1| Fmu protein [Mycobacterium ulceran... 715 0.0 gi|296170731|ref|ZP_06852304.1| RNA methyltransferase Sun [Mycob... 710 0.0 gi|240172782|ref|ZP_04751441.1| fmu protein (sun protein) [Mycob... 698 0.0 gi|41407232|ref|NP_960068.1| Fmu [Mycobacterium avium subsp. par... 694 0.0 gi|342858684|ref|ZP_08715339.1| Fmu [Mycobacterium colombiense C... 669 0.0 gi|118463294|ref|YP_882553.1| Fmu protein [Mycobacterium avium 1... 664 0.0 gi|333990931|ref|YP_004523545.1| Fmu protein [Mycobacterium sp. ... 659 0.0 gi|126435009|ref|YP_001070700.1| Fmu (Sun) domain-containing pro... 654 0.0 gi|108799351|ref|YP_639548.1| Fmu (Sun) [Mycobacterium sp. MCS] ... 652 0.0 gi|118469121|ref|YP_887381.1| ribosomal RNA small subunit methyl... 652 0.0 gi|120403672|ref|YP_953501.1| Fmu (Sun) domain-containing protei... 645 0.0 gi|145224311|ref|YP_001134989.1| Fmu (Sun) domain-containing pro... 636 3e-180 gi|169629894|ref|YP_001703543.1| Fmu protein [Mycobacterium absc... 562 5e-158 gi|254775818|ref|ZP_05217334.1| Fmu [Mycobacterium avium subsp. ... 551 7e-155 gi|296140265|ref|YP_003647508.1| Fmu (Sun) domain-containing pro... 533 2e-149 gi|325672533|ref|ZP_08152229.1| RNA methyltransferase Sun [Rhodo... 511 1e-142 gi|226366354|ref|YP_002784137.1| rRNA methyltransferase [Rhodoco... 510 2e-142 gi|111024114|ref|YP_707086.1| ribosomal RNA small subunit methyl... 505 7e-141 gi|229493567|ref|ZP_04387352.1| Fmu protein [Rhodococcus erythro... 504 2e-140 gi|226306504|ref|YP_002766464.1| rRNA methyltransferase [Rhodoco... 503 3e-140 gi|312139583|ref|YP_004006919.1| RNA binding sun protein [Rhodoc... 502 5e-140 gi|289753488|ref|ZP_06512866.1| fmu protein (sun protein) [Mycob... 484 1e-134 gi|291003629|ref|ZP_06561602.1| ribosomal RNA small subunit meth... 481 8e-134 gi|326382170|ref|ZP_08203862.1| Fmu (Sun) domain-containing prot... 479 3e-133 gi|213965561|ref|ZP_03393755.1| Fmu protein [Corynebacterium amy... 478 8e-133 gi|54025577|ref|YP_119819.1| putative RNA-binding Sun protein [N... 475 7e-132 gi|256379230|ref|YP_003102890.1| Fmu (Sun) domain-containing pro... 473 2e-131 gi|257055599|ref|YP_003133431.1| tRNA/rRNA cytosine-C5-methylase... 472 5e-131 gi|333919541|ref|YP_004493122.1| Fmu protein [Amycolicicoccus su... 470 2e-130 gi|319948960|ref|ZP_08023065.1| RNA binding Sun protein [Dietzia... 465 6e-129 gi|238063929|ref|ZP_04608638.1| fmu domain-containing protein [M... 464 2e-128 gi|255325042|ref|ZP_05366148.1| Fmu protein [Corynebacterium tub... 461 8e-128 gi|343924561|ref|ZP_08764109.1| putative rRNA methyltransferase ... 461 1e-127 gi|227503566|ref|ZP_03933615.1| possible rRNA SAM-dependent meth... 461 1e-127 gi|134098684|ref|YP_001104345.1| ribosomal RNA small subunit met... 459 4e-127 gi|38233907|ref|NP_939674.1| hypothetical protein DIP1321 [Coryn... 458 1e-126 gi|300784671|ref|YP_003764962.1| ribosomal RNA small subunit met... 457 1e-126 gi|311739502|ref|ZP_07713337.1| RNA methyltransferase Sun [Coryn... 457 1e-126 gi|306836175|ref|ZP_07469159.1| exopolyphosphatase [Corynebacter... 457 2e-126 gi|225021364|ref|ZP_03710556.1| hypothetical protein CORMATOL_01... 457 3e-126 gi|25028274|ref|NP_738328.1| hypothetical protein CE1718 [Coryne... 455 6e-126 gi|298256363|gb|ADI71472.1| putative tRNA/rRNA cytosine-C5-methy... 455 8e-126 gi|227549211|ref|ZP_03979260.1| possible rRNA SAM-dependent meth... 453 3e-125 gi|302866833|ref|YP_003835470.1| Fmu (Sun) domain-containing pro... 452 7e-125 >gi|289745158|ref|ZP_06504536.1| sun protein [Mycobacterium tuberculosis 02_1987] gi|289685686|gb|EFD53174.1| sun protein [Mycobacterium tuberculosis 02_1987] Length=768 Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/457 (100%), Positives = 457/457 (100%), Gaps = 0/457 (0%) Query 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY Sbjct 312 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 371 Query 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE Sbjct 372 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 431 Query 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA Sbjct 432 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 491 Query 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP Sbjct 492 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 551 Query 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV Sbjct 552 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 611 Query 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR Sbjct 612 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 671 Query 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 420 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR Sbjct 672 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 731 Query 421 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 457 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT Sbjct 732 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 768 >gi|15608545|ref|NP_215923.1| Fmu protein (SUN protein) [Mycobacterium tuberculosis H37Rv] gi|15840865|ref|NP_335902.1| sun protein [Mycobacterium tuberculosis CDC1551] gi|148661198|ref|YP_001282721.1| Fmu protein [Mycobacterium tuberculosis H37Ra] 50 more sequence titles Length=457 Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/457 (100%), Positives = 457/457 (100%), Gaps = 0/457 (0%) Query 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY Sbjct 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 Query 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE Sbjct 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 Query 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA Sbjct 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 Query 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP Sbjct 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 Query 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV Sbjct 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 Query 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR Sbjct 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 Query 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 420 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR Sbjct 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 420 Query 421 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 457 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT Sbjct 421 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 457 >gi|31792601|ref|NP_855094.1| Fmu protein (SUN protein) [Mycobacterium bovis AF2122/97] gi|121637337|ref|YP_977560.1| putative fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989812|ref|YP_002644499.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172] 16 more sequence titles Length=457 Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/457 (99%), Positives = 457/457 (100%), Gaps = 0/457 (0%) Query 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY Sbjct 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 Query 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE Sbjct 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 Query 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA Sbjct 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 Query 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP Sbjct 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 Query 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV Sbjct 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 Query 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR Sbjct 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 Query 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 420 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR Sbjct 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 420 Query 421 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 457 PLFEPV+AGLGEGPHVQLWPHRHGTDAMFAAALRRLT Sbjct 421 PLFEPVLAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 457 >gi|339631474|ref|YP_004723116.1| FMU protein (SUN protein) [Mycobacterium africanum GM041182] gi|339330830|emb|CCC26501.1| putative FMU protein (SUN protein) [Mycobacterium africanum GM041182] Length=457 Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/457 (99%), Positives = 456/457 (99%), Gaps = 0/457 (0%) Query 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY Sbjct 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 Query 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE Sbjct 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 Query 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 FDSAR GFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA Sbjct 121 FDSARVGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 Query 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP Sbjct 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 Query 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV Sbjct 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 Query 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR Sbjct 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 Query 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 420 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR Sbjct 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 420 Query 421 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 457 PLFEPV+AGLGEGPHVQLWPHRHGTDAMFAAALRRLT Sbjct 421 PLFEPVLAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 457 >gi|306784137|ref|ZP_07422459.1| SUN protein [Mycobacterium tuberculosis SUMu003] gi|306797229|ref|ZP_07435531.1| SUN protein [Mycobacterium tuberculosis SUMu006] gi|306803111|ref|ZP_07439779.1| SUN protein [Mycobacterium tuberculosis SUMu008] gi|308331083|gb|EFP19934.1| SUN protein [Mycobacterium tuberculosis SUMu003] gi|308342392|gb|EFP31243.1| SUN protein [Mycobacterium tuberculosis SUMu006] gi|308350182|gb|EFP39033.1| SUN protein [Mycobacterium tuberculosis SUMu008] Length=457 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/457 (99%), Positives = 456/457 (99%), Gaps = 0/457 (0%) Query 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY Sbjct 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 Query 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE Sbjct 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 Query 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA Sbjct 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 Query 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP Sbjct 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 Query 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV Sbjct 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 Query 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR Sbjct 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 Query 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 420 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRR PVHALDTR Sbjct 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRRPVHALDTR 420 Query 421 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 457 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT Sbjct 421 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRLT 457 >gi|183982229|ref|YP_001850520.1| Fmu protein [Mycobacterium marinum M] gi|183175555|gb|ACC40665.1| Fmu protein [Mycobacterium marinum M] Length=481 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/450 (86%), Positives = 407/450 (91%), Gaps = 0/450 (0%) Query 6 RGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRA 65 RGPRRRPLDPAR AAF LRAVS R+AYANLVLPALL +RGI GRDAAFATELTYG CRA Sbjct 30 RGPRRRPLDPARGAAFNALRAVSERNAYANLVLPALLRERGITGRDAAFATELTYGACRA 89 Query 66 RGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSAR 125 RGLLDA+IGAAA RSP+AIDPVLLDLLRLG YQLLRTRVDAHAAVSTTVEQAGIEFDSAR Sbjct 90 RGLLDAIIGAAAGRSPEAIDPVLLDLLRLGAYQLLRTRVDAHAAVSTTVEQAGIEFDSAR 149 Query 126 AGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGEL 185 AGFVN VLRTIA RDE+SWV ELAPD + DP+GHAAFVHAHPRWIAQAFADALG + EL Sbjct 150 AGFVNAVLRTIADRDEQSWVQELAPDPRRDPVGHAAFVHAHPRWIAQAFADALGPSAAEL 209 Query 186 EAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQ 245 +AVLASDDERP VHLAARPGVLTA LA VRGTVGRYSP+AVYL GDPG LAPVRDGQ Sbjct 210 DAVLASDDERPQVHLAARPGVLTAAALADEVRGTVGRYSPYAVYLLGGDPGLLAPVRDGQ 269 Query 246 ALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPH 305 ALVQDEGSQLVARALTLAPV+GD+GRWLDLCAGPGGKTALLA LG+ ARVTAVEPS H Sbjct 270 ALVQDEGSQLVARALTLAPVEGDSGRWLDLCAGPGGKTALLAALGVATGARVTAVEPSSH 329 Query 306 RADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADV 365 RADLVA NT GLPV+L+R DGR+TDL+P FDRVLVDAPCTGLGALRRRPEARWRRQP+DV Sbjct 330 RADLVADNTGGLPVDLVRGDGRYTDLEPVFDRVLVDAPCTGLGALRRRPEARWRRQPSDV 389 Query 366 AALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEP 425 L KLQRELL+AAI LTRPGGVVLYATCSPHLAETVG VADALRRHPV ALDTR LFEP Sbjct 390 PTLVKLQRELLAAAINLTRPGGVVLYATCSPHLAETVGVVADALRRHPVDALDTRALFEP 449 Query 426 VIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 + GLGEGP+VQLWPHRHGTDAMFAAALRR Sbjct 450 ITEGLGEGPYVQLWPHRHGTDAMFAAALRR 479 >gi|118617418|ref|YP_905750.1| Fmu protein [Mycobacterium ulcerans Agy99] gi|118569528|gb|ABL04279.1| Fmu protein [Mycobacterium ulcerans Agy99] Length=457 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/455 (85%), Positives = 405/455 (90%), Gaps = 0/455 (0%) Query 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 M + RGPRRRPLDPAR AAF LRAVS R+AYANLVLPALL +RGI GRDAA ATELTY Sbjct 1 MPNQRRGPRRRPLDPARGAAFNALRAVSERNAYANLVLPALLRERGITGRDAALATELTY 60 Query 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 G CRARGLLDA+IGAAA RSP+AIDP LLDLLRLG YQLLRTRVDAHAAVSTTVEQAGIE Sbjct 61 GACRARGLLDAIIGAAAGRSPEAIDPFLLDLLRLGAYQLLRTRVDAHAAVSTTVEQAGIE 120 Query 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 FDSARAGFVN VLRTIA RDE+SWV ELAPD + DP+GHAAFVH HPRWIAQAFADALG Sbjct 121 FDSARAGFVNAVLRTIADRDEQSWVQELAPDPRRDPVGHAAFVHTHPRWIAQAFADALGP 180 Query 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 + EL+AVLASDDERP VHLAARPGVLTA LA VRGTVGRYSP+AVYL GDPG LAP Sbjct 181 SAAELDAVLASDDERPQVHLAARPGVLTAAALADEVRGTVGRYSPYAVYLLGGDPGLLAP 240 Query 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 VRDGQALVQDEGSQLVARALTLAPV+GD+GRWLDLCAGPGGKTALLA LG+ ARVTAV Sbjct 241 VRDGQALVQDEGSQLVARALTLAPVEGDSGRWLDLCAGPGGKTALLAALGVATGARVTAV 300 Query 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRR 360 EPS HRADLVA NT GLPV+L+R DGR+TDL+P FDRVLVDAPCTGLGALRRRPEARWRR Sbjct 301 EPSSHRADLVADNTGGLPVDLVRGDGRYTDLEPVFDRVLVDAPCTGLGALRRRPEARWRR 360 Query 361 QPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTR 420 QP+DV L KLQRELL+AAI LTRPGGVV YATCSPHLAETVG VADALRRHPV ALDTR Sbjct 361 QPSDVPTLVKLQRELLAAAINLTRPGGVVFYATCSPHLAETVGVVADALRRHPVDALDTR 420 Query 421 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 LFEP+ GLGEGP+VQLWPHRHGTDAMFAAALRR Sbjct 421 ALFEPITEGLGEGPYVQLWPHRHGTDAMFAAALRR 455 >gi|296170731|ref|ZP_06852304.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894614|gb|EFG74350.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC BAA-614] Length=461 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/452 (86%), Positives = 403/452 (90%), Gaps = 2/452 (0%) Query 4 RSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTC 63 R RG RRRPLDPAR AAFE LRAVS RDAYANL LPALL +R I GRDAAFATEL YGTC Sbjct 9 RGRGKRRRPLDPARAAAFEVLRAVSERDAYANLALPALLRERQISGRDAAFATELAYGTC 68 Query 64 RARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDS 123 R RGLLDAVIGAAA RSP IDPVLLDLLRLGTYQLLRTRVD++AAVSTTVEQAGIEFDS Sbjct 69 RTRGLLDAVIGAAAGRSPDTIDPVLLDLLRLGTYQLLRTRVDSYAAVSTTVEQAGIEFDS 128 Query 124 ARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVG 183 ARAGFVNGVLR +A RDE+SWV ELAPD DP+GHAAFVHAHPRWIAQAFADALG A G Sbjct 129 ARAGFVNGVLRAVAARDEKSWVEELAPDPSRDPVGHAAFVHAHPRWIAQAFADALGPAAG 188 Query 184 ELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRD 243 EL+AVLASDD RP VHLAARPGVLTA ELA AV GTVGRYSP+AVYLP GDPGRLAPVRD Sbjct 189 ELDAVLASDDGRPQVHLAARPGVLTAAELAEAVGGTVGRYSPYAVYLPGGDPGRLAPVRD 248 Query 244 GQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPS 303 G ALVQDEGSQLVARALTL PVD D GRWLDLCAGPGGKTALLA LG ARVTAVEP+ Sbjct 249 GVALVQDEGSQLVARALTLVPVD-DAGRWLDLCAGPGGKTALLAALGAGSGARVTAVEPA 307 Query 304 PHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPA 363 P RADLV +NTRGL V++LRVDGR T L+P FDRVLVDAPCTGLGALRRRPEARWRRQPA Sbjct 308 PRRADLVVENTRGLAVDVLRVDGRQTGLEPAFDRVLVDAPCTGLGALRRRPEARWRRQPA 367 Query 364 DVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLF 423 DV ALAKLQRELL AAIALTRPGGVVLYATCSPHLAETVG VADALRRHPV A+DTRPLF Sbjct 368 DVPALAKLQRELLGAAIALTRPGGVVLYATCSPHLAETVGVVADALRRHPVCAVDTRPLF 427 Query 424 EPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 EPV GLG+GP+VQLWPHRHGTDAMFAAALRR Sbjct 428 EPV-DGLGDGPYVQLWPHRHGTDAMFAAALRR 458 >gi|240172782|ref|ZP_04751441.1| fmu protein (sun protein) [Mycobacterium kansasii ATCC 12478] Length=464 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/445 (87%), Positives = 404/445 (91%), Gaps = 0/445 (0%) Query 12 PLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDA 71 PLDPAR AAF+ L AV++RDAYANL LPALL +RGI GRDAAFATELTYGTCR RGLLDA Sbjct 19 PLDPARAAAFDALCAVTSRDAYANLALPALLRERGITGRDAAFATELTYGTCRTRGLLDA 78 Query 72 VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNG 131 VIGAAA R+P+AIDPVLLDLLRLGTYQLLRTRV +HAAVSTTV+QAGIEFDSARAGFVNG Sbjct 79 VIGAAAGRAPEAIDPVLLDLLRLGTYQLLRTRVGSHAAVSTTVDQAGIEFDSARAGFVNG 138 Query 132 VLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLAS 191 VLRTIAGRDERSWV ELAPD ++DPIGHAAFVHAHPRWIAQAFADALG A ELEAVLAS Sbjct 139 VLRTIAGRDERSWVDELAPDPRSDPIGHAAFVHAHPRWIAQAFADALGTAAAELEAVLAS 198 Query 192 DDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDE 251 DDERP VHLAARPGVLTA ELA AV GTVGRYSP+AVYLP GDP RLAPVRDGQALVQDE Sbjct 199 DDERPHVHLAARPGVLTAAELAAAVGGTVGRYSPYAVYLPGGDPARLAPVRDGQALVQDE 258 Query 252 GSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 GSQLVARALTLAPVD D GRWLDLCAGPGGKTALLAGLG Q ARVTAVEPSP RA +V Sbjct 259 GSQLVARALTLAPVDDDRGRWLDLCAGPGGKTALLAGLGGQSGARVTAVEPSPQRAGMVR 318 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 NT GLPV +++ DGRH+ LDPGFDRVLVD PCTGLGALRRRPEARWRRQPADV ALAKL Sbjct 319 ANTAGLPVAVVQADGRHSGLDPGFDRVLVDVPCTGLGALRRRPEARWRRQPADVPALAKL 378 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 QRELL+AAIAL RPGGVVLYATCSPHLAETVG +ADALRRHPV ALDTRPLFEPV GLG Sbjct 379 QRELLAAAIALVRPGGVVLYATCSPHLAETVGVLADALRRHPVAALDTRPLFEPVTEGLG 438 Query 432 EGPHVQLWPHRHGTDAMFAAALRRL 456 +GP+VQLWPHRHGTDAMFA AL+RL Sbjct 439 DGPYVQLWPHRHGTDAMFAGALQRL 463 >gi|41407232|ref|NP_960068.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395583|gb|AAS03451.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10] gi|336461621|gb|EGO40486.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium avium subsp. paratuberculosis S397] Length=464 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/456 (87%), Positives = 405/456 (89%), Gaps = 5/456 (1%) Query 4 RSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTC 63 R R RRRPLDPAR AAFE LRAVS RDAYANL LPALL +RGI GRDAAFATELTYGTC Sbjct 7 RGRANRRRPLDPARAAAFEVLRAVSERDAYANLALPALLRERGIIGRDAAFATELTYGTC 66 Query 64 RARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDS 123 R RGLLDAVIGAAA R P+AIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQA IEFDS Sbjct 67 RTRGLLDAVIGAAAGRPPEAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAAIEFDS 126 Query 124 ARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVG 183 ARAGFVNGVLR IAGRDERSWV ELAPD DPIGHAAFVHAHPRWIAQAFADALGAA Sbjct 127 ARAGFVNGVLRRIAGRDERSWVQELAPDPARDPIGHAAFVHAHPRWIAQAFADALGAAAA 186 Query 184 ELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRD 243 EL+AVLASDDERP VHLAARPGVLTA ELA AV GTVGR+SPFAVYL GDPGRLAPVRD Sbjct 187 ELDAVLASDDERPQVHLAARPGVLTAAELADAVGGTVGRHSPFAVYLAGGDPGRLAPVRD 246 Query 244 GQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQ----CAARVTA 299 G ALVQDEGSQLVARALTLAPVDGD GRWLDLCAGPGGKTALLA LG Q RVTA Sbjct 247 GLALVQDEGSQLVARALTLAPVDGDCGRWLDLCAGPGGKTALLASLGAQRFSESQFRVTA 306 Query 300 VEPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWR 359 VEP+P RADLV +NTRGLPVE+LRVDGRHT L P FDRVLVDAPCTGLGALRRRPEARWR Sbjct 307 VEPAPRRADLVVENTRGLPVEVLRVDGRHTGLQPAFDRVLVDAPCTGLGALRRRPEARWR 366 Query 360 RQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDT 419 RQP DV AL KLQRELL AAIALTRPGGVVLYATCSPHLAETVG VADALRRHPV ALD Sbjct 367 RQPGDVPALTKLQRELLGAAIALTRPGGVVLYATCSPHLAETVGVVADALRRHPVSALDA 426 Query 420 RPLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 RPLFEPV A LG+GPHVQLWPHRHGTDAMFA+ALRR Sbjct 427 RPLFEPV-ADLGDGPHVQLWPHRHGTDAMFASALRR 461 >gi|342858684|ref|ZP_08715339.1| Fmu [Mycobacterium colombiense CECT 3035] gi|342134388|gb|EGT87568.1| Fmu [Mycobacterium colombiense CECT 3035] Length=479 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/440 (86%), Positives = 393/440 (90%), Gaps = 4/440 (0%) Query 19 AAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVIGAAAE 78 AAF+ LRAV RDAYANL LPALL RGI GRDAAFATELTYGTCR+RGLLDAVIGAAA Sbjct 38 AAFDVLRAVRERDAYANLALPALLRDRGITGRDAAFATELTYGTCRSRGLLDAVIGAAAG 97 Query 79 RSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTIAG 138 RSP+AIDPVLLDLLRLG YQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTI G Sbjct 98 RSPEAIDPVLLDLLRLGAYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTICG 157 Query 139 RDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASDDERPAV 198 RDE+SWV ELAPD DPIG AAFVHAHPRWIAQAFADALGAA EL+AVLASDDERP V Sbjct 158 RDEQSWVAELAPDPAQDPIGRAAFVHAHPRWIAQAFADALGAAATELDAVLASDDERPQV 217 Query 199 HLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEGSQLVAR 258 HLAARPG LTA ELA AV GT GRYSP+AVYLP GDPGRLAPVRD ALVQDEGSQLVAR Sbjct 218 HLAARPGALTAAELADAVDGTAGRYSPYAVYLPGGDPGRLAPVRDKVALVQDEGSQLVAR 277 Query 259 ALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQC---AARVTAVEPSPHRADLVAQNTR 315 AL LAPVDGD GRWLDLCAGPGGKTALLA LG+Q + R+TAVEP+P RA+LVA+NTR Sbjct 278 ALALAPVDGDGGRWLDLCAGPGGKTALLASLGVQQFPESFRLTAVEPAPRRAELVAENTR 337 Query 316 GLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKLQREL 375 GLPV++LRVDGR T L+P FDRVLVDAPCTGLGALRRRPEARWRRQPADV AL +LQREL Sbjct 338 GLPVDVLRVDGRQTGLEPTFDRVLVDAPCTGLGALRRRPEARWRRQPADVPALTRLQREL 397 Query 376 LSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLGEGPH 435 L AAIALTRPGGVVLYATCSPHLAETVG VADALRR PV ALDTRPLFEPV LG+GPH Sbjct 398 LGAAIALTRPGGVVLYATCSPHLAETVGVVADALRRQPVSALDTRPLFEPV-EDLGDGPH 456 Query 436 VQLWPHRHGTDAMFAAALRR 455 VQLWPHRHGTDAMFAAALRR Sbjct 457 VQLWPHRHGTDAMFAAALRR 476 >gi|118463294|ref|YP_882553.1| Fmu protein [Mycobacterium avium 104] gi|118164581|gb|ABK65478.1| Fmu protein [Mycobacterium avium 104] Length=439 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/436 (88%), Positives = 389/436 (90%), Gaps = 5/436 (1%) Query 24 LRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVIGAAAERSPQA 83 LRAVS RDAYANL LPALL +RGI GRDAAFATELTYGTCR RGLLDAVIGAAA R P+A Sbjct 2 LRAVSERDAYANLALPALLRERGITGRDAAFATELTYGTCRTRGLLDAVIGAAAGRPPEA 61 Query 84 IDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTIAGRDERS 143 IDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQA IEFDSARAGFVNGVLR IAGRDERS Sbjct 62 IDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAAIEFDSARAGFVNGVLRRIAGRDERS 121 Query 144 WVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASDDERPAVHLAAR 203 WV ELAPD DPIGHAAFVHAHPRWIAQAFADALGAA EL+AVLASDDERP VHLAAR Sbjct 122 WVQELAPDPARDPIGHAAFVHAHPRWIAQAFADALGAAAAELDAVLASDDERPQVHLAAR 181 Query 204 PGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEGSQLVARALTLA 263 PG LTA ELA AV GTVGR+SPFAVYL GDPGRLAPVRDG ALVQDEGSQLVARALTLA Sbjct 182 PGALTAAELADAVGGTVGRHSPFAVYLAGGDPGRLAPVRDGLALVQDEGSQLVARALTLA 241 Query 264 PVDGDTGRWLDLCAGPGGKTALLAGLGLQCAA----RVTAVEPSPHRADLVAQNTRGLPV 319 PVDGD GRWLDLCAGPGGKTALLA LG Q + RVTAVEP+P RADLV +NTRGLPV Sbjct 242 PVDGDCGRWLDLCAGPGGKTALLASLGAQRFSGPQFRVTAVEPAPRRADLVVENTRGLPV 301 Query 320 ELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKLQRELLSAA 379 E+LRVDGRHT L P FDRVLVDAPCTGLGALRRRPEARWRRQP DV L KLQRELL AA Sbjct 302 EVLRVDGRHTGLQPAFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPTLTKLQRELLGAA 361 Query 380 IALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLGEGPHVQLW 439 IALTRPGGVVLYATCSPHLAETVG VADALRRHPV ALD RPLFEPV A LG+GPHVQLW Sbjct 362 IALTRPGGVVLYATCSPHLAETVGVVADALRRHPVSALDARPLFEPV-ADLGDGPHVQLW 420 Query 440 PHRHGTDAMFAAALRR 455 PHRHGTDAMFAAALRR Sbjct 421 PHRHGTDAMFAAALRR 436 >gi|333990931|ref|YP_004523545.1| Fmu protein [Mycobacterium sp. JDM601] gi|333486899|gb|AEF36291.1| Fmu protein [Mycobacterium sp. JDM601] Length=466 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/449 (84%), Positives = 395/449 (88%), Gaps = 3/449 (0%) Query 9 RRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGL 68 R+PLDPARRAAF+ LRAVS RDAYANL+LP LL +RGI GRDAAFATEL YGTCRARGL Sbjct 16 ERKPLDPARRAAFDVLRAVSQRDAYANLMLPPLLRERGITGRDAAFATELAYGTCRARGL 75 Query 69 LDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGF 128 LDA+IGAAA+RS AI+PVLLDLLRLG+YQLLRTRVDAHAAVSTTV+QA IEFDSARAGF Sbjct 76 LDAIIGAAAQRSADAINPVLLDLLRLGSYQLLRTRVDAHAAVSTTVDQAAIEFDSARAGF 135 Query 129 VNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAV 188 VNGVLRTI+GRDE+SW GELAPDA DPIGHAAFV AHPRWIAQAFADALG GEL AV Sbjct 136 VNGVLRTISGRDEQSWTGELAPDAATDPIGHAAFVRAHPRWIAQAFADALGVDAGELGAV 195 Query 189 LASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALV 248 LA+DDERP VHLAARPG+LTA ELA AV GTVGRYSP+AVYL GDPGRL PV+ G AL+ Sbjct 196 LAADDERPQVHLAARPGMLTAAELAAAVEGTVGRYSPYAVYLSGGDPGRLEPVQAGAALI 255 Query 249 QDEGSQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRA 307 QDEGSQLVARAL LAPV G DTGRWLDLCAGPGGKTALLA LG ARVTAVE SP RA Sbjct 256 QDEGSQLVARALALAPVAGDDTGRWLDLCAGPGGKTALLAALGAATGARVTAVEQSPQRA 315 Query 308 DLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 367 DLV +NTRGL V +L VDGR + L PGFDRVLVDAPCTGLGALRRRPEARWRRQPADV Sbjct 316 DLVTENTRGLDVAVLTVDGRDSGLPPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVPV 375 Query 368 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEP-- 425 LAKLQRELL+AAIALTRPGGVVLYATCSPHLAETVG VADALRRHPV ALDTRPLF P Sbjct 376 LAKLQRELLAAAIALTRPGGVVLYATCSPHLAETVGVVADALRRHPVTALDTRPLFAPLD 435 Query 426 VIAGLGEGPHVQLWPHRHGTDAMFAAALR 454 + LGEGPHVQLWPHRHGTDAMFAAAL+ Sbjct 436 GLGLLGEGPHVQLWPHRHGTDAMFAAALQ 464 >gi|126435009|ref|YP_001070700.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. JLS] gi|126234809|gb|ABN98209.1| Fmu (Sun) domain protein [Mycobacterium sp. JLS] Length=455 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/446 (80%), Positives = 386/446 (87%), Gaps = 4/446 (0%) Query 9 RRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGL 68 RR+PLDPARR AF+ LRAVS RDAYANL LPALL +RG+ GRDAAFATELTYGTCR+RGL Sbjct 12 RRKPLDPARRVAFDVLRAVSERDAYANLALPALLNERGLDGRDAAFATELTYGTCRSRGL 71 Query 69 LDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGF 128 LDAVI AAA R IDPVLLDLLRLGTYQLLRTRV+ HAAVSTTVEQAGIEFD+ARAGF Sbjct 72 LDAVIEAAAGRPVDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTTVEQAGIEFDTARAGF 131 Query 129 VNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAV 188 VNGVLR IAGRDE+SWV ELAP A DP+GH AF HAHPRW+AQAF DALGA GEL+A+ Sbjct 132 VNGVLRKIAGRDEQSWVAELAPPADTDPVGHIAFTHAHPRWVAQAFTDALGARAGELDAL 191 Query 189 LASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALV 248 LASDD RP VHLAARPGVL+A ELA AV G VGRYSP+AVYLP GDPGRL PVRDG ALV Sbjct 192 LASDDARPLVHLAARPGVLSAEELAAAVGGEVGRYSPYAVYLPGGDPGRLDPVRDGSALV 251 Query 249 QDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRAD 308 QDEGSQLVARALTLAPVD D GRWLDLCAGPGGKTA+LA L +TAVEP+P RA+ Sbjct 252 QDEGSQLVARALTLAPVDDDRGRWLDLCAGPGGKTAMLAAL---APGPLTAVEPAPRRAE 308 Query 309 LVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAAL 368 +V +NTRGL V +LRVDGR L+PGFDRVLVDAPCTGLGALRRRPEARWRRQP DV L Sbjct 309 MVEENTRGLDVTVLRVDGRDPGLEPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPGL 368 Query 369 AKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIA 428 A+LQRELL++AI LTRPGGVVLYATCSPHLAETVG VADA+RR PV ALDTR LF+PV Sbjct 369 ARLQRELLASAIRLTRPGGVVLYATCSPHLAETVGVVADAVRRQPVTALDTRALFDPV-D 427 Query 429 GLGEGPHVQLWPHRHGTDAMFAAALR 454 LG+GP+VQLWPHRHGTDAMFAAAL+ Sbjct 428 DLGDGPYVQLWPHRHGTDAMFAAALQ 453 >gi|108799351|ref|YP_639548.1| Fmu (Sun) [Mycobacterium sp. MCS] gi|119868467|ref|YP_938419.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. KMS] gi|108769770|gb|ABG08492.1| Fmu (Sun) [Mycobacterium sp. MCS] gi|119694556|gb|ABL91629.1| Fmu (Sun) domain protein [Mycobacterium sp. KMS] Length=455 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/446 (80%), Positives = 386/446 (87%), Gaps = 4/446 (0%) Query 9 RRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGL 68 RR+PLDPARR AF+ LRAVS RDAYANL LPALL +RG+ GRDAAFATELTYGTCR+RGL Sbjct 12 RRKPLDPARRVAFDVLRAVSERDAYANLALPALLNERGLDGRDAAFATELTYGTCRSRGL 71 Query 69 LDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGF 128 LDAVI AAA R IDPVLLDLLRLGTYQLLRTRV+ HAAVSTTVEQAGIEFD+ARAGF Sbjct 72 LDAVIEAAAGRPVDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTTVEQAGIEFDTARAGF 131 Query 129 VNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAV 188 VNGVLR IAGRDE+SWV ELAP A DP+GH AF HAHPRW+AQAF DALGA GEL+A+ Sbjct 132 VNGVLRKIAGRDEQSWVAELAPPADTDPVGHIAFTHAHPRWVAQAFTDALGARAGELDAL 191 Query 189 LASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALV 248 LASDD RP VHLAARPGVL+A ELA AV G +GRYSP+AVYLP GDPGRL PVRDG ALV Sbjct 192 LASDDARPLVHLAARPGVLSAEELAAAVGGELGRYSPYAVYLPGGDPGRLDPVRDGSALV 251 Query 249 QDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRAD 308 QDEGSQLVARALTLAPVD D GRWLDLCAGPGGKTA+LA L +TAVEP+P RA+ Sbjct 252 QDEGSQLVARALTLAPVDDDRGRWLDLCAGPGGKTAMLAAL---APGPLTAVEPAPRRAE 308 Query 309 LVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAAL 368 +V +NTRGL V +LRVDGR L+PGFDRVLVDAPCTGLGALRRRPEARWRRQP DV L Sbjct 309 MVEENTRGLDVTVLRVDGRDPGLEPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPGL 368 Query 369 AKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIA 428 A+LQRELL++AI LTRPGGVVLYATCSPHLAETVG VADA+RR PV ALDTR LF+PV Sbjct 369 ARLQRELLASAIRLTRPGGVVLYATCSPHLAETVGVVADAVRRQPVTALDTRALFDPV-D 427 Query 429 GLGEGPHVQLWPHRHGTDAMFAAALR 454 LG+GP+VQLWPHRHGTDAMFAAAL+ Sbjct 428 DLGDGPYVQLWPHRHGTDAMFAAALQ 453 >gi|118469121|ref|YP_887381.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium smegmatis str. MC2 155] gi|118170408|gb|ABK71304.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium smegmatis str. MC2 155] Length=464 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/443 (80%), Positives = 380/443 (86%), Gaps = 2/443 (0%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 LDPARR AF+ LRAVS RDAYANL LPA+L +RGI GRDAAFATELTYG CR+ GLLDAV Sbjct 17 LDPARRVAFDVLRAVSERDAYANLALPAMLRERGIDGRDAAFATELTYGACRSLGLLDAV 76 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I AA R IDPVLLDLLRLGTYQLLRTRV+ HAAVSTTVEQAGIEFDSARAGFVNGV Sbjct 77 IERAAGRPTDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTTVEQAGIEFDSARAGFVNGV 136 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 LRTI+GRDE++W+ ELAP A+ DP+GH AFVHAHPRWIAQAF DALGAA GEL+A+LASD Sbjct 137 LRTISGRDEQAWIAELAPSAETDPVGHTAFVHAHPRWIAQAFTDALGAAAGELDALLASD 196 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 D RP VHLAARP +TA ELA GTVGRYSP+AVYL GDPGR+ VRDG A VQDEG Sbjct 197 DARPVVHLAARPTAITAEELAEQAGGTVGRYSPYAVYLTGGDPGRVPAVRDGAAQVQDEG 256 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQLVARALTLA VDG D GRWLDLC+GPGGKTALLA +G ARVTAVEP+ RADLV Sbjct 257 SQLVARALTLAEVDGTDEGRWLDLCSGPGGKTALLASIGAASGARVTAVEPAERRADLVE 316 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 +NTRGL VE+ RVDGR + L PGFDRVLVDAPCTGLGALRRRPE+RWRRQP DVAAL +L Sbjct 317 ENTRGLGVEVHRVDGRESGLQPGFDRVLVDAPCTGLGALRRRPESRWRRQPGDVAALTRL 376 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 QRELL+AAI LTRPGGVVLYATCSPHLAETVG VADA+RRHPV A+DTRPLF PV LG Sbjct 377 QRELLAAAIRLTRPGGVVLYATCSPHLAETVGVVADAIRRHPVTAMDTRPLFAPV-DDLG 435 Query 432 EGPHVQLWPHRHGTDAMFAAALR 454 GPHVQLWPHRHGTDAMFAAALR Sbjct 436 AGPHVQLWPHRHGTDAMFAAALR 458 >gi|120403672|ref|YP_953501.1| Fmu (Sun) domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956490|gb|ABM13495.1| Fmu (Sun) domain protein [Mycobacterium vanbaalenii PYR-1] Length=449 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/447 (81%), Positives = 377/447 (85%), Gaps = 2/447 (0%) Query 9 RRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGL 68 +R+ LDPAR+AAF+ LRAVS RDAYANL LPALL RGI GRDAAFATELTYGTCR RGL Sbjct 2 KRKRLDPARQAAFDVLRAVSERDAYANLALPALLRDRGITGRDAAFATELTYGTCRTRGL 61 Query 69 LDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGF 128 LDAVI AAA R IDPVLLDLLRLG+YQLLRTRVD HAAVSTTV+QAGIEFDS+RAGF Sbjct 62 LDAVIAAAAGRPVDKIDPVLLDLLRLGSYQLLRTRVDDHAAVSTTVDQAGIEFDSSRAGF 121 Query 129 VNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAV 188 VNGVLRTIA RDE SWV ELAP A DPIGH AFVHAHPRW+AQAFADALGA GEL A+ Sbjct 122 VNGVLRTIARRDEASWVEELAPSATGDPIGHLAFVHAHPRWVAQAFADALGARAGELGAL 181 Query 189 LASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALV 248 LASDD RP VHL ARPG LTA ELA V G VGRYSP+AVYL GDPG+LA VR+G ALV Sbjct 182 LASDDSRPEVHLVARPGALTAAELAEQVGGGVGRYSPYAVYLGEGDPGQLAAVREGTALV 241 Query 249 QDEGSQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRA 307 QDEGSQLVARALTLAP+ G D GRWLDLCAGPGGKTALLA LG VTAVEP+P RA Sbjct 242 QDEGSQLVARALTLAPLVGPDGGRWLDLCAGPGGKTALLAALGAPEGVTVTAVEPAPRRA 301 Query 308 DLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 367 DLV QNT GLPVE++RVDGR L PGFDRVLVDAPCTGLGALRRRPEARWRRQP DV Sbjct 302 DLVEQNTAGLPVEVVRVDGREPGLAPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPP 361 Query 368 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVI 427 LAKLQRELL++AI LTRPGGVVLYATCSPHLAET G VADALRRHPV ALDTR LFEP Sbjct 362 LAKLQRELLASAIRLTRPGGVVLYATCSPHLAETAGVVADALRRHPVTALDTRELFEPAT 421 Query 428 AGLGEGPHVQLWPHRHGTDAMFAAALR 454 G+G VQLWPHRHGTDAMFAAALR Sbjct 422 -DTGDGTSVQLWPHRHGTDAMFAAALR 447 >gi|145224311|ref|YP_001134989.1| Fmu (Sun) domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315444643|ref|YP_004077522.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1] gi|145216797|gb|ABP46201.1| Fmu (Sun) domain protein [Mycobacterium gilvum PYR-GCK] gi|315262946|gb|ADT99687.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1] Length=462 Score = 636 bits (1640), Expect = 3e-180, Method: Compositional matrix adjust. Identities = 350/447 (79%), Positives = 375/447 (84%), Gaps = 2/447 (0%) Query 4 RSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTC 63 + R PRR+ LDPAR+AAF+ LRAVS RD+YANL LPALL R I GRDAAFATELTYGTC Sbjct 6 KKRPPRRKRLDPARQAAFDVLRAVSERDSYANLALPALLRDRRITGRDAAFATELTYGTC 65 Query 64 RARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDS 123 RA+GLLDAVI AAA R IDP+LLDLLRLG YQ+LRTRVD HAAVSTTVEQAG+EFD+ Sbjct 66 RAKGLLDAVIAAAAGRPVDHIDPILLDLLRLGAYQILRTRVDDHAAVSTTVEQAGLEFDT 125 Query 124 ARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVG 183 ARAGFVNGVLRTIA RDE WV ELAP A DP+GH AFVHAHPRWI QAFADALGA G Sbjct 126 ARAGFVNGVLRTIARRDEADWVAELAPPAATDPVGHLAFVHAHPRWIGQAFADALGARAG 185 Query 184 ELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRD 243 EL A+LASDD RP VHLAARPG+LTA ELA GTVGRYSP+AVYL GDPG +A VR+ Sbjct 186 ELGALLASDDSRPEVHLAARPGMLTAAELAEQTGGTVGRYSPYAVYLGDGDPGGVAAVRE 245 Query 244 GQALVQDEGSQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEP 302 +ALVQDEGSQLVARALTLAPVDG D GRWLDLCAGPGGKTALLA LG A VTAVEP Sbjct 246 SRALVQDEGSQLVARALTLAPVDGPDGGRWLDLCAGPGGKTALLAALGQPSGATVTAVEP 305 Query 303 SPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQP 362 +P RA+LV QNT GLPV+++RVDGR + L PGFDRVLVDAPCTGLGALRRRPEARWRRQP Sbjct 306 APRRAELVEQNTAGLPVDVVRVDGRESGLTPGFDRVLVDAPCTGLGALRRRPEARWRRQP 365 Query 363 ADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPL 422 DV ALAKLQRELL+AAI LTRPGGVVLYATCSPHLAET G VADALRR PV ALDT L Sbjct 366 GDVPALAKLQRELLAAAIRLTRPGGVVLYATCSPHLAETAGVVADALRRQPVTALDTGEL 425 Query 423 FEPVIAGLGEGPHVQLWPHRHGTDAMF 449 F P G+GP VQLWPHRHGTDAMF Sbjct 426 FSPAT-DTGDGPSVQLWPHRHGTDAMF 451 >gi|169629894|ref|YP_001703543.1| Fmu protein [Mycobacterium abscessus ATCC 19977] gi|169241861|emb|CAM62889.1| Probable Fmu protein (SUN protein) [Mycobacterium abscessus] Length=471 Score = 562 bits (1448), Expect = 5e-158, Method: Compositional matrix adjust. Identities = 318/456 (70%), Positives = 356/456 (79%), Gaps = 6/456 (1%) Query 4 RSRGPR---RRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 RS GP RR LDP R+AA + LRAVS +DAYANL LPALL +RGI GRDAAFATELTY Sbjct 16 RSAGPAERARRKLDPPRQAALDVLRAVSRQDAYANLALPALLRERGITGRDAAFATELTY 75 Query 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 GTCRARGLLDAVI AAA R+ +D L D LRLG YQLLRTRV+ HAA+STTV+ +E Sbjct 76 GTCRARGLLDAVIEAAAGRTIDQVDEGLRDPLRLGAYQLLRTRVEPHAALSTTVDAVAVE 135 Query 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 FD RAGFVN VLRTI+ RDE WV ELAP ++D IG AF AHPRWIAQ+F+DALG Sbjct 136 FDQGRAGFVNAVLRTISRRDEADWVEELAP-PESDRIGRLAFATAHPRWIAQSFSDALGP 194 Query 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 A EL VLASDDERP VHLAARPG + A LA AV GTVGRYSPFAVYLP GDPGRL P Sbjct 195 AGSELAQVLASDDERPLVHLAARPGRIDAEALAEAVGGTVGRYSPFAVYLPGGDPGRLEP 254 Query 241 VRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAV 300 VRDG A VQDEGSQL+ARA LAP+ G +WLDLCAGPGGKTALL L Q A VTAV Sbjct 255 VRDGLAQVQDEGSQLIARATALAPLQGADEQWLDLCAGPGGKTALLGALAAQRGAHVTAV 314 Query 301 EPSPHRADLVAQNTRGLPVELLRVDGRHTDL-DPGFDRVLVDAPCTGLGALRRRPEARWR 359 E +PHRA+LVA T+ LPV ++ DGR +DL FDRVLVDAPCTGLGALRRRPEARWR Sbjct 315 EVAPHRAELVANATKSLPVTVVTADGRDSDLAAASFDRVLVDAPCTGLGALRRRPEARWR 374 Query 360 RQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDT 419 RQP D+ L KLQRELL++AI LTRPGGV++Y+TCSPHLAETVG V+DA+RR+ V A D Sbjct 375 RQPGDIPELVKLQRELLASAIQLTRPGGVIVYSTCSPHLAETVGVVSDAVRRYAVSAEDA 434 Query 420 RPLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 R +F P +AGLG+ VQLWPHRHGTDAMF A LR+ Sbjct 435 RAVF-PGVAGLGDADAVQLWPHRHGTDAMFTALLRK 469 >gi|254775818|ref|ZP_05217334.1| Fmu [Mycobacterium avium subsp. avium ATCC 25291] Length=390 Score = 551 bits (1421), Expect = 7e-155, Method: Compositional matrix adjust. Identities = 323/376 (86%), Positives = 331/376 (89%), Gaps = 4/376 (1%) Query 12 PLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDA 71 PLDPAR AAFE LRAVS RDAYANL LPALL +RGI GRDAAFATELTYGTCR RGLLDA Sbjct 15 PLDPARGAAFEVLRAVSERDAYANLALPALLRERGITGRDAAFATELTYGTCRTRGLLDA 74 Query 72 VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNG 131 VIGAAA R P+AIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQA IEF SARAGFVNG Sbjct 75 VIGAAAGRPPEAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAAIEFGSARAGFVNG 134 Query 132 VLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLAS 191 VLR IAGRDERSWV ELAPD DPIGHAAFVHAHPRWIAQAFADALGAA EL+AVLAS Sbjct 135 VLRRIAGRDERSWVQELAPDPARDPIGHAAFVHAHPRWIAQAFADALGAAAAELDAVLAS 194 Query 192 DDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDE 251 DDERP VHLAARPG LTA ELA AV GTVGR+SPFAVYL GDPGRLAPVRDG ALVQDE Sbjct 195 DDERPQVHLAARPGALTAAELADAVGGTVGRHSPFAVYLAGGDPGRLAPVRDGLALVQDE 254 Query 252 GSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAA----RVTAVEPSPHRA 307 GSQLVARALTLAPVDGD GRWLDLCAGPGGKTALLA LG Q + RVTAVEP+P RA Sbjct 255 GSQLVARALTLAPVDGDCGRWLDLCAGPGGKTALLASLGAQRFSGPQFRVTAVEPAPRRA 314 Query 308 DLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 367 DLV +NTRGLPVE+LRVDGRHT L P FDRVLVDAPCTGLGALRRRPEARWRRQP DV Sbjct 315 DLVVENTRGLPVEVLRVDGRHTGLQPAFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPT 374 Query 368 LAKLQRELLSAAIALT 383 L KLQRELL AAIALT Sbjct 375 LTKLQRELLGAAIALT 390 >gi|296140265|ref|YP_003647508.1| Fmu (Sun) domain-containing protein [Tsukamurella paurometabola DSM 20162] gi|296028399|gb|ADG79169.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162] Length=452 Score = 533 bits (1373), Expect = 2e-149, Method: Compositional matrix adjust. Identities = 291/450 (65%), Positives = 332/450 (74%), Gaps = 7/450 (1%) Query 14 DPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVI 73 DPARRAA ETL AV R AYANLVLP LL Q + GRDAAFATELTYG CRA+GLLDAVI Sbjct 3 DPARRAALETLAAVRERGAYANLVLPGLLRQARLTGRDAAFATELTYGACRAQGLLDAVI 62 Query 74 GAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVL 133 A+ RS ID +LD LRLG YQLLRTRV AHAAV TVE GF N VL Sbjct 63 EDASGRSVDEIDGPVLDALRLGVYQLLRTRVGAHAAVDETVEAVKASSGRGAGGFANAVL 122 Query 134 RTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA----AVGELEAVL 189 R ++ DE +WV +LAP A +D +GH A +AHPRWIA AF ++L A ++G+L+A+L Sbjct 123 RKVSKADEDAWVAKLAPSAADDLVGHLAMQYAHPRWIADAFWESLRANGIRSMGQLQALL 182 Query 190 ASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQ 249 A DD RP VHL ARPG ++A ELA V G GR SP+AVYLP GDPG L PVRDG A VQ Sbjct 183 AEDDARPPVHLVARPGEISADELALIVGGETGRLSPYAVYLPGGDPGALEPVRDGLAGVQ 242 Query 250 DEGSQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRAD 308 DEGSQL+ARALT+APV+G D GRWLDLCAGPGGK ALL L ARV AVEP+ HRA+ Sbjct 243 DEGSQLIARALTIAPVEGEDGGRWLDLCAGPGGKAALLGSLASIEGARVDAVEPAEHRAE 302 Query 309 LVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAAL 368 LV T+GLPVE+ DGR + L+PG+DRVLVDAPC+GLGALRRRPEARWR+QPAD+A L Sbjct 303 LVRTITKGLPVEVHVTDGRSSGLEPGYDRVLVDAPCSGLGALRRRPEARWRKQPADIADL 362 Query 369 AKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADA--LRRHPVHALDTRPLFEPV 426 LQRELL+AA LTRPGGVVLYATCSPH+AET+G VAD L + +DTRPL Sbjct 363 TVLQRELLTAAAGLTRPGGVVLYATCSPHVAETIGVVADQRLLTDAGLEPIDTRPLVPAT 422 Query 427 IAGLGEGPHVQLWPHRHGTDAMFAAALRRL 456 LG+GPHVQLWPH HGTDAMF A R+L Sbjct 423 DLPLGDGPHVQLWPHLHGTDAMFFQAFRKL 452 >gi|325672533|ref|ZP_08152229.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707] gi|325556410|gb|EGD26076.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707] Length=495 Score = 511 bits (1315), Expect = 1e-142, Method: Compositional matrix adjust. Identities = 290/444 (66%), Positives = 335/444 (76%), Gaps = 2/444 (0%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +D RRAA + LRAV RDAYANLVLP LL +R + GRDAA ATEL YG RARGLLDAV Sbjct 49 IDQPRRAARDVLRAVRERDAYANLVLPGLLRERRLDGRDAALATELAYGAARARGLLDAV 108 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I A R + ID LLD+L LG YQLLRTR+ HAAV+T+V+ E +AGFVN V Sbjct 109 IAECAGRPVEEIDGPLLDVLELGAYQLLRTRIAPHAAVATSVDLVRAEAGPGKAGFVNAV 168 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 LR ++ + E WV LAPDA DP+GH AF +AHP+WIAQAFAD+LGA EL+ VL +D Sbjct 169 LRRVSEKTEDEWVARLAPDAVADPVGHLAFRYAHPKWIAQAFADSLGADAAELKDVLVAD 228 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 D RP VHL ARPG ++A ELA G VG YSP+AV+L GDPG L VR+G A VQDEG Sbjct 229 DARPGVHLVARPGEISAEELALVTGGEVGPYSPYAVHLDGGDPGLLDAVREGLAGVQDEG 288 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQLVARALTLAP++G DTGRWLDLCAGPGGK ALL L R+ AVEP+ HRADLV Sbjct 289 SQLVARALTLAPLEGPDTGRWLDLCAGPGGKAALLGALVGIDGGRLDAVEPAEHRADLVR 348 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 + TR LPV++ DGR LD G+DR+LVDAPCTGLGALRRRPEARWRRQP+DV+ L KL Sbjct 349 KTTRDLPVDVHVADGREPGLDGGYDRILVDAPCTGLGALRRRPEARWRRQPSDVSGLVKL 408 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 QRELL++A+ L RPGGVVLY+TCSPH++ETV VADA+RRH ALDTR L P + LG Sbjct 409 QRELLASALQLVRPGGVVLYSTCSPHVSETVAVVADAVRRHGAVALDTRELV-PGVPNLG 467 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 +GP VQLWPHRHGTDAMF AALRR Sbjct 468 DGPGVQLWPHRHGTDAMFMAALRR 491 >gi|226366354|ref|YP_002784137.1| rRNA methyltransferase [Rhodococcus opacus B4] gi|226244844|dbj|BAH55192.1| putative rRNA methyltransferase [Rhodococcus opacus B4] Length=475 Score = 510 bits (1314), Expect = 2e-142, Method: Compositional matrix adjust. Identities = 301/461 (66%), Positives = 340/461 (74%), Gaps = 13/461 (2%) Query 4 RSRGPR--RRP------LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFA 55 R+ PR RRP LD R AA + LRAV RDAYANLVLP LL +R + GRDAA A Sbjct 18 RNNRPRQARRPDASQSGLDQPRLAARDVLRAVRERDAYANLVLPGLLRERRLDGRDAALA 77 Query 56 TELTYGTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVE 115 TEL YG RARGLLDAVI A R ID LLD+L+LG YQLLRTRV HAAV+T+V+ Sbjct 78 TELAYGAARARGLLDAVIADCAGRPIDEIDGPLLDVLQLGAYQLLRTRVAPHAAVATSVD 137 Query 116 QAGIEFDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFA 175 E +AGFVN VLR ++ R E WV LAP DP+G AF HAHP WIAQ FA Sbjct 138 LVRAEAGPGKAGFVNAVLRRVSERSEAEWVERLAP---ADPVGRLAFEHAHPTWIAQVFA 194 Query 176 DALGAAVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDP 235 DALGA GELE VL +DD RPAVHL ARPG +++ ELA A G VGRYSP+AVYL GDP Sbjct 195 DALGADAGELEDVLIADDARPAVHLVARPGEISSEELALATGGEVGRYSPYAVYLDGGDP 254 Query 236 GRLAPVRDGQALVQDEGSQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCA 294 G L VR+G A VQDEGSQLVARAL+LAP+DG D GRWLDLCAGPGGK ALL L Sbjct 255 GLLDAVREGLAGVQDEGSQLVARALSLAPLDGPDAGRWLDLCAGPGGKAALLGALAGIEG 314 Query 295 ARVTAVEPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRP 354 R+ AVEP HRADL+ + T+ LPV++ DGR L+ GFDR+LVDAPCTGLGALRRRP Sbjct 315 GRLDAVEPVAHRADLIRKTTKELPVDVHVADGRDPGLEGGFDRILVDAPCTGLGALRRRP 374 Query 355 EARWRRQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPV 414 EARWRRQP+DVA LAKLQRELL++A L RPGGV+LYATCSPHL+ETV VADA+RRH + Sbjct 375 EARWRRQPSDVAGLAKLQRELLASAAGLVRPGGVILYATCSPHLSETVAVVADAVRRHGL 434 Query 415 HALDTRPLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 ALDTR L P + GLG+GP VQLWPHRHGTDAMF AALR+ Sbjct 435 TALDTRELV-PGVPGLGDGPSVQLWPHRHGTDAMFMAALRK 474 >gi|111024114|ref|YP_707086.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii RHA1] gi|110823644|gb|ABG98928.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii RHA1] Length=475 Score = 505 bits (1300), Expect = 7e-141, Method: Compositional matrix adjust. Identities = 298/461 (65%), Positives = 339/461 (74%), Gaps = 13/461 (2%) Query 4 RSRGPR--RRP------LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFA 55 R+ PR RRP LD R AA + LRAV RDAYANLVLP LL +R + GRDAA A Sbjct 18 RNNRPRQARRPDASQSGLDQPRLAARDVLRAVRERDAYANLVLPGLLRERRLDGRDAALA 77 Query 56 TELTYGTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVE 115 TEL YG RARGLLDAVI A R ID LLD+L+LG YQLLRTRV HAAV+T+V+ Sbjct 78 TELAYGAARARGLLDAVIADCAGRPIAEIDGPLLDVLQLGAYQLLRTRVAPHAAVATSVD 137 Query 116 QAGIEFDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFA 175 E +AGFVN VLR ++ R E WV LAP DP+G AF HAHP WIAQ FA Sbjct 138 LVRAEAGPGKAGFVNAVLRRVSERSEAEWVERLAP---ADPVGRLAFEHAHPTWIAQVFA 194 Query 176 DALGAAVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDP 235 DALGA GELE VL +DD RP VHL ARPG +++ ELA A G VGRYSP+AVYL GDP Sbjct 195 DALGADAGELEDVLIADDARPVVHLVARPGEISSEELALATGGEVGRYSPYAVYLDGGDP 254 Query 236 GRLAPVRDGQALVQDEGSQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCA 294 G L VR+G A VQDEGSQLVARAL+LAP+DG D GRWLDLCAGPGGK ALL L Sbjct 255 GLLDAVREGLAGVQDEGSQLVARALSLAPLDGPDAGRWLDLCAGPGGKAALLGALAGIEG 314 Query 295 ARVTAVEPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRP 354 R+ AVEP HRADL+ + T+ LPV++ DGR L G+DR+LVDAPCTGLGALRRRP Sbjct 315 GRLDAVEPVEHRADLIRKTTKELPVDVHVADGRDPGLAGGYDRILVDAPCTGLGALRRRP 374 Query 355 EARWRRQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPV 414 EARWRRQP+DVA LAKLQRELL++A+ L RPGGV+LYATCSPHL+ETV VADA+RR+ + Sbjct 375 EARWRRQPSDVAGLAKLQRELLASAVELVRPGGVILYATCSPHLSETVAVVADAVRRYGL 434 Query 415 HALDTRPLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 ALDTR L P + GLG+GP VQLWPHRHGTDAMF AALR+ Sbjct 435 TALDTRELV-PGVPGLGDGPGVQLWPHRHGTDAMFMAALRK 474 >gi|229493567|ref|ZP_04387352.1| Fmu protein [Rhodococcus erythropolis SK121] gi|229319528|gb|EEN85364.1| Fmu protein [Rhodococcus erythropolis SK121] Length=482 Score = 504 bits (1297), Expect = 2e-140, Method: Compositional matrix adjust. Identities = 286/444 (65%), Positives = 333/444 (75%), Gaps = 5/444 (1%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 LD R AA + LRAV RDAYANLVLP LL R + RDAA ATEL YG RA+GLLDAV Sbjct 40 LDQPRLAARDVLRAVRERDAYANLVLPGLLRDRKLDARDAALATELAYGAARAQGLLDAV 99 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I AA R + ID LLD+LRLG+YQLLRTRV HAAV+T+V+ E RAGFVN V Sbjct 100 IAHAAGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVATSVDLVRAENGQGRAGFVNAV 159 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 LR ++ R + WV LAP DP+G AF HAHP WIAQ FAD+LGAA GELE VL +D Sbjct 160 LRRVSERTQEEWVELLAP---KDPVGRLAFEHAHPLWIAQVFADSLGAAAGELEDVLIAD 216 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 D RPAVHL ARPG ++A ELA G +G YSP+AV+L GDPG+L VR G A VQDEG Sbjct 217 DARPAVHLVARPGEISAEELALVTGGEIGPYSPYAVHLDGGDPGQLEAVRQGLAGVQDEG 276 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQLVARAL++AP++G D+GRWLDLCAGPGGK ALL L R+ AVEP HRA+L+ Sbjct 277 SQLVARALSIAPLEGEDSGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVEHRAELIR 336 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 + TR LPV++ DGR + L+PG+DR+LVDAPCTGLGALRRRPEARWRRQP+DVA L KL Sbjct 337 KTTRELPVDVHVADGRESGLEPGYDRILVDAPCTGLGALRRRPEARWRRQPSDVAPLVKL 396 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 QRELL+AAI L RPGGVVLY+TCSPHL+ET+ VADA+RRH V LDT+ L P + +G Sbjct 397 QRELLAAAIELVRPGGVVLYSTCSPHLSETLAVVADAVRRHGVVELDTKELV-PGVPDVG 455 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 +G VQLWPHRHGTDAMF AALR+ Sbjct 456 DGSSVQLWPHRHGTDAMFMAALRK 479 >gi|226306504|ref|YP_002766464.1| rRNA methyltransferase [Rhodococcus erythropolis PR4] gi|226185621|dbj|BAH33725.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4] Length=482 Score = 503 bits (1295), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 286/444 (65%), Positives = 333/444 (75%), Gaps = 5/444 (1%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 LD R AA + LRAV RDAYANLVLP LL R + RDAA ATEL YG RA+GLLDAV Sbjct 40 LDQPRLAARDVLRAVRERDAYANLVLPGLLRDRKLDARDAALATELAYGAARAQGLLDAV 99 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I AA R + ID LLD+LRLG+YQLLRTRV HAAV+T+V+ E RAGFVN V Sbjct 100 IAHAAGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVATSVDLVRAENGQGRAGFVNAV 159 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 LR ++ R + WV LAP DP+G AF HAHP WIAQ FAD+LGAA GELE VL +D Sbjct 160 LRRVSERTQDEWVELLAP---KDPVGRLAFEHAHPLWIAQVFADSLGAAAGELEDVLIAD 216 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 D RPAVHL ARPG ++A ELA G +G YSP+AV+L GDPG+L VR G A VQDEG Sbjct 217 DARPAVHLVARPGEISAEELALVTGGEIGPYSPYAVHLDGGDPGQLEAVRQGLAGVQDEG 276 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQLVARAL++AP++G D+GRWLDLCAGPGGK ALL L R+ AVEP HRA+L+ Sbjct 277 SQLVARALSIAPLEGEDSGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVEHRAELIR 336 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 + TR LPV++ DGR + L+PG+DR+LVDAPCTGLGALRRRPEARWRRQP+DVA L KL Sbjct 337 KTTRELPVDVHVADGRESGLEPGYDRILVDAPCTGLGALRRRPEARWRRQPSDVAPLVKL 396 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 QRELL+AAI L RPGGVVLY+TCSPHL+ET+ VADA+RRH V LDT+ L P + +G Sbjct 397 QRELLAAAIELVRPGGVVLYSTCSPHLSETLAVVADAVRRHGVVELDTKELV-PGVPDVG 455 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 +G VQLWPHRHGTDAMF AALR+ Sbjct 456 DGSSVQLWPHRHGTDAMFMAALRK 479 >gi|312139583|ref|YP_004006919.1| RNA binding sun protein [Rhodococcus equi 103S] gi|311888922|emb|CBH48235.1| putative RNA binding Sun protein [Rhodococcus equi 103S] Length=437 Score = 502 bits (1293), Expect = 5e-140, Method: Compositional matrix adjust. Identities = 285/434 (66%), Positives = 328/434 (76%), Gaps = 2/434 (0%) Query 23 TLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVIGAAAERSPQ 82 LRAV RDAYANLVLP LL +R + GRDAA ATEL YG RARGLLDAVI A R + Sbjct 1 MLRAVRERDAYANLVLPGLLRERRLDGRDAALATELAYGAARARGLLDAVIAECAGRPVE 60 Query 83 AIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTIAGRDER 142 ID LLD+L LG YQLLRTR+ HAAV+T+V+ E +AGFVN VLR ++ + E Sbjct 61 EIDGPLLDVLELGAYQLLRTRIAPHAAVATSVDLVRAEAGPGKAGFVNAVLRRVSEKTED 120 Query 143 SWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASDDERPAVHLAA 202 WV LAPDA DP+GH AF +AHP+WIAQAFAD+LGA EL+ VL +DD RP VHL A Sbjct 121 EWVARLAPDAVADPVGHLAFRYAHPKWIAQAFADSLGADAAELKDVLVADDARPGVHLVA 180 Query 203 RPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEGSQLVARALTL 262 RPG ++A ELA G VG YSP+AV+L GDPG L VR+G A VQDEGSQLVARALTL Sbjct 181 RPGEISAEELALVTGGEVGPYSPYAVHLDGGDPGLLDAVREGLAGVQDEGSQLVARALTL 240 Query 263 APVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVAQNTRGLPVEL 321 AP++G DTGRWLDLCAGPGGK ALL L R+ AVEP+ HRADLV + TR LPV++ Sbjct 241 APLEGPDTGRWLDLCAGPGGKAALLGALVGIDGGRLDAVEPAEHRADLVRKTTRDLPVDV 300 Query 322 LRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKLQRELLSAAIA 381 DGR LD G+DR+LVDAPCTGLGALRRRPEARWRRQP+DV+ L KLQRELL++A+ Sbjct 301 HVADGREPGLDGGYDRILVDAPCTGLGALRRRPEARWRRQPSDVSGLVKLQRELLASALQ 360 Query 382 LTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLGEGPHVQLWPH 441 L RPGGVVLY+TCSPH++ETV VADA+RRH ALDTR L P + LG+GP VQLWPH Sbjct 361 LVRPGGVVLYSTCSPHVSETVAVVADAVRRHGAVALDTRELV-PGVPNLGDGPGVQLWPH 419 Query 442 RHGTDAMFAAALRR 455 RHGTDAMF AALRR Sbjct 420 RHGTDAMFMAALRR 433 >gi|289753488|ref|ZP_06512866.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] gi|289694075|gb|EFD61504.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] Length=254 Score = 484 bits (1247), Expect = 1e-134, Method: Compositional matrix adjust. Identities = 250/254 (99%), Positives = 252/254 (99%), Gaps = 0/254 (0%) Query 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY Sbjct 1 MTPRSRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTY 60 Query 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE Sbjct 61 GTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIE 120 Query 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA Sbjct 121 FDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGA 180 Query 181 AVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 AVGELEAVLAS+DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP Sbjct 181 AVGELEAVLASNDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAP 240 Query 241 VRDGQALVQDEGSQ 254 VRDGQALVQDE + Sbjct 241 VRDGQALVQDEAAS 254 >gi|291003629|ref|ZP_06561602.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length=473 Score = 481 bits (1239), Expect = 8e-134, Method: Compositional matrix adjust. Identities = 290/451 (65%), Positives = 328/451 (73%), Gaps = 4/451 (0%) Query 7 GPRRRPL-DPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRA 65 GP R P+ DPAR AA ETLRAV RDAYANL LPALL QR I GRDAA ATELTYG CRA Sbjct 23 GPARPPVEDPARSAALETLRAVRDRDAYANLALPALLKQRRISGRDAALATELTYGACRA 82 Query 66 RGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSAR 125 +GLLDAVIG + R IDP LLD LRLG YQLLRTR+ AHAAV++TV+ E S + Sbjct 83 QGLLDAVIGECSARPLDGIDPELLDALRLGAYQLLRTRIPAHAAVASTVDIVRAESGSRQ 142 Query 126 AGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGEL 185 AGF N VLR I+ RDE+ W+ LAP +DP+GH A +AHPRWIAQ+FADALG+ EL Sbjct 143 AGFANAVLRRISERDEQEWIDRLAPARDDDPVGHLALRYAHPRWIAQSFADALGSVGAEL 202 Query 186 EAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPR--GDPGRLAPVRD 243 EA LA+DD RPAVHL ARPG ++A ELA G YSP+ V+L GDPG L PVR+ Sbjct 203 EAALAADDARPAVHLTARPGEISAEELAAITGGDEAPYSPYGVHLDSGAGDPGDLEPVRE 262 Query 244 GQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPS 303 G A VQDEGSQLVA AL+ V G RWLDLCAGPGGK LL L + AVE + Sbjct 263 GFASVQDEGSQLVAVALSRVEVQGPDLRWLDLCAGPGGKANLLGSLVTMDGGTLDAVEQA 322 Query 304 PHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPA 363 PHRADLV ++T GL VE+ DGR L+PG+DRVLVDAPCTGLGALRRRPEARWRR+P Sbjct 323 PHRADLVRRSTDGLSVEVHVADGRDPGLEPGYDRVLVDAPCTGLGALRRRPEARWRRRPD 382 Query 364 DVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLF 423 DVA LAKLQRELL +A+ LTR GGVV Y CSPHL+ET G V+D +RR V LD RP F Sbjct 383 DVAELAKLQRELLLSAVRLTREGGVVAYVVCSPHLSETEGVVSDVVRRAGVEQLDARPYF 442 Query 424 EPVIAGLGEGPHVQLWPHRHGTDAMFAAALR 454 P + LG+GP VQLWPHRHGTDAMF A LR Sbjct 443 -PGVPDLGDGPAVQLWPHRHGTDAMFCALLR 472 >gi|326382170|ref|ZP_08203862.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326198900|gb|EGD56082.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length=480 Score = 479 bits (1234), Expect = 3e-133, Method: Compositional matrix adjust. Identities = 275/455 (61%), Positives = 323/455 (71%), Gaps = 4/455 (0%) Query 5 SRGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCR 64 R R + +DPAR A + LRAV RDAYANL+LP LL +R I GRDA ATELTYGT R Sbjct 25 ERKYRDKDIDPARIVARDVLRAVRERDAYANLLLPKLLRERKISGRDAGLATELTYGTAR 84 Query 65 ARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSA 124 + G LDAVI AAA R ID LLD+LRLG YQLLRTR+ +HAAVST+V+ A E Sbjct 85 SMGFLDAVISAAAGRPAAEIDGPLLDVLRLGAYQLLRTRIGSHAAVSTSVDIARSENGMG 144 Query 125 RAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGE 184 +GFVN VLR ++ RDE+ W+ ELAP +D IG+ AF +AHPRWI + F +AL + GE Sbjct 145 PSGFVNAVLRKVSQRDEQLWIDELAPSMMDDRIGNLAFTYAHPRWIGEVFYEALDRSTGE 204 Query 185 LEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDG 244 L+A LA+DDERP VHL ARPG +TA ELA G GRYSP+ VYLP GDPG+L VR+G Sbjct 205 LQAALAADDERPIVHLVARPGQITAEELALISGGEEGRYSPYCVYLPEGDPGQLDAVREG 264 Query 245 QALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSP 304 A VQDEGSQLVA ALT A V DTGRWLDLCAGPGGK ALL L A V AVE S Sbjct 265 FAGVQDEGSQLVAIALTRADVGADTGRWLDLCAGPGGKAALLGSLADVEGAHVDAVEISD 324 Query 305 HRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPAD 364 HRA L+ + GLPV++ DGR + L+PGFDRVLVDAPC+GLG+LRRRPEARWRR+P D Sbjct 325 HRAKLIEKVVDGLPVDVRVADGRASGLEPGFDRVLVDAPCSGLGSLRRRPEARWRRRPED 384 Query 365 VAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRR-HPVHALDTRPLF 423 V AL +LQ++LL+ A+ L RPGGVV+Y+TCSPH AETV V L + +D RPL Sbjct 385 VPALVELQKQLLAEALRLVRPGGVVVYSTCSPHRAETVEVVDAVLSEVSGITRVDARPLV 444 Query 424 EPVI---AGLGEGPHVQLWPHRHGTDAMFAAALRR 455 + LG GPHVQLWPHR TDAMF AALR+ Sbjct 445 AGDVFDADSLGPGPHVQLWPHRQDTDAMFLAALRK 479 >gi|213965561|ref|ZP_03393755.1| Fmu protein [Corynebacterium amycolatum SK46] gi|213951720|gb|EEB63108.1| Fmu protein [Corynebacterium amycolatum SK46] Length=485 Score = 478 bits (1231), Expect = 8e-133, Method: Compositional matrix adjust. Identities = 252/444 (57%), Positives = 307/444 (70%), Gaps = 2/444 (0%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +D R+ A + L V DAYANL+LP LL + GRDAAFATELTYGT RA GLLDAV Sbjct 41 IDQPRKVALKVLADVRENDAYANLLLPKLLKAHKLKGRDAAFATELTYGTLRAEGLLDAV 100 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I A++ R I ++D+LRLGTYQLLRTRVDA+AAV T+V GFVN + Sbjct 101 IEASSSRPLSDIAGPVMDVLRLGTYQLLRTRVDAYAAVDTSVRSVAKVAGPGARGFVNAI 160 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 LR ++ + E WV E+APD DPIG+ A HAHPRWIA FA ALGA GEL+ LA+D Sbjct 161 LRKVSSQTESEWVSEIAPDPATDPIGYVAMKHAHPRWIAMEFARALGAQAGELQQALAAD 220 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 D RP VHL ARPG +TA ELA G G +SP+ V L G PG L PVR G A VQDEG Sbjct 221 DARPLVHLVARPGEITAEELALITGGEEGPWSPYCVRLDSGAPGELEPVRQGLAAVQDEG 280 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQL+ARA+T APV G D+GRWLDLC+GPGGK+A + G+ A++ AVE S RA+LV Sbjct 281 SQLIARAVTKAPVAGEDSGRWLDLCSGPGGKSAFIGGIAAIEGAKLDAVEVSATRAELVK 340 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 + T GLPV + DGR T L+ GFDR+LVDAPC+GLG+LRRRPEARWR+ P+D+ +L L Sbjct 341 KATAGLPVTVTVADGRDTGLETGFDRILVDAPCSGLGSLRRRPEARWRKSPSDLNSLTTL 400 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 Q ELLS A+ L RPGG+++Y+TCSPHL ET G V A+ PV L+ L P + +G Sbjct 401 QFELLSEAVRLARPGGIIVYSTCSPHLRETRGIVDRAVTELPVTELNAHELVAP-MTDVG 459 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 P VQ+WPHRHGTDAMF + LR+ Sbjct 460 PYPSVQMWPHRHGTDAMFFSVLRK 483 >gi|54025577|ref|YP_119819.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152] gi|54017085|dbj|BAD58455.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152] Length=627 Score = 475 bits (1223), Expect = 7e-132, Method: Compositional matrix adjust. Identities = 288/446 (65%), Positives = 323/446 (73%), Gaps = 5/446 (1%) Query 11 RPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLD 70 R +DP R A E LRAV R AYANLVLP LL R I GRDAA ATEL YG CRA+GLLD Sbjct 184 RSIDPPREVALEVLRAVRERAAYANLVLPKLLRDRRIDGRDAALATELAYGACRAQGLLD 243 Query 71 AVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVN 130 AVI A A R ID LLD+LRLG YQLLRTR+ AHAAV T+V A EF + ++GFVN Sbjct 244 AVIAACAGRPVAQIDGPLLDVLRLGVYQLLRTRIGAHAAVDTSVGLARAEFGAGKSGFVN 303 Query 131 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 190 VLR A R + WV ELAP DPIG AF +AHP WIAQAFADALGA EL +LA Sbjct 304 AVLRQAARRTAQEWVEELAP---ADPIGKLAFEYAHPVWIAQAFADALGARATELPELLA 360 Query 191 SDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 250 +DD RP VHL ARPG +TA ELA G GR+SP+AVYL GDPG L PVR+G A VQD Sbjct 361 ADDARPTVHLVARPGEITAEELALVTGGEEGRWSPYAVYLEGGDPGGLEPVREGMAAVQD 420 Query 251 EGSQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADL 309 EGSQLVA +LT AP+DG DTGRWLDLCAGPGGK ALL L V AVEP+ HRA+L Sbjct 421 EGSQLVALSLTRAPLDGPDTGRWLDLCAGPGGKAALLGALAAIDGFEVDAVEPAEHRAEL 480 Query 310 VAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALA 369 V TR LPV + DGR + L PG+DR+LVDAPCTGLGALRRRPEARWRR P D+ L Sbjct 481 VRTATRELPVRVHVADGRDSGLSPGYDRILVDAPCTGLGALRRRPEARWRRGPEDLRDLV 540 Query 370 KLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAG 429 +LQRELL+AA L RPGGVV+Y+TCSPHLAETV VAD +RR LDTR L P ++ Sbjct 541 RLQRELLTAAWDLLRPGGVVVYSTCSPHLAETVSVVADLVRRTDAEQLDTRDLL-PGVSD 599 Query 430 LGEGPHVQLWPHRHGTDAMFAAALRR 455 +G+GP QLWPHRHGTDAMF AALR+ Sbjct 600 VGDGPAAQLWPHRHGTDAMFMAALRK 625 >gi|256379230|ref|YP_003102890.1| Fmu (Sun) domain-containing protein [Actinosynnema mirum DSM 43827] gi|255923533|gb|ACU39044.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827] Length=478 Score = 473 bits (1218), Expect = 2e-131, Method: Compositional matrix adjust. Identities = 282/451 (63%), Positives = 329/451 (73%), Gaps = 3/451 (0%) Query 7 GPRRRPL-DPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRA 65 GP R P DPARRAA +TLRAV+ RDAYANLVLP LL +R I GRDAA ATELTYGT RA Sbjct 27 GPERPPQEDPARRAALDTLRAVTKRDAYANLVLPGLLRERRITGRDAALATELTYGTARA 86 Query 66 RGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSAR 125 RGLLDAV+ A ++R ID +LD LRLG YQLLRTRV AHAAV++TV+ + S Sbjct 87 RGLLDAVLAACSDRPLAEIDDAVLDALRLGAYQLLRTRVPAHAAVASTVDLVRADRGSGA 146 Query 126 AGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGEL 185 AGF N VLR + G+DE W+ E+APD ++DPIG+ A AHPRW+AQAFA+ALG+ L Sbjct 147 AGFANAVLRRVTGQDEAGWIDEVAPDEESDPIGYLAMSTAHPRWVAQAFAEALGSRGEPL 206 Query 186 EAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPR-GDPGRLAPVRDG 244 A LA+DD RP VHL ARPG ++A ELA G + YSP+ V+L GDP L VR+ Sbjct 207 RAALAADDTRPIVHLIARPGEISADELAAITGGDLAPYSPYGVHLADGGDPADLDVVRER 266 Query 245 QALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSP 304 A VQDEGSQL A ALT AP++G RWLDLCAGPGGK ALL L A + AVE +P Sbjct 267 LAAVQDEGSQLCALALTRAPLEGTDERWLDLCAGPGGKAALLGALAALSDATLDAVEKTP 326 Query 305 HRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPAD 364 HRA+L+ + T GLPV++ DGR LD G+DRVLVDAPCTGLGALRRRPEARWRRQP+D Sbjct 327 HRAELIRKATIGLPVDVRVADGRDPGLDGGYDRVLVDAPCTGLGALRRRPEARWRRQPSD 386 Query 365 VAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFE 424 VAALAKLQRELL++A+ L RPGG+V Y CSPHLAETVG VA+ R+ LDTR F Sbjct 387 VAALAKLQRELLTSALDLVRPGGLVAYVVCSPHLAETVGVVAEVARKTGAERLDTREFF- 445 Query 425 PVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 P + LG+GP VQLWPH HGTDAMF A LRR Sbjct 446 PGVPNLGDGPQVQLWPHEHGTDAMFCAILRR 476 >gi|257055599|ref|YP_003133431.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM 43017] gi|256585471|gb|ACU96604.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM 43017] Length=484 Score = 472 bits (1215), Expect = 5e-131, Method: Compositional matrix adjust. Identities = 264/460 (58%), Positives = 316/460 (69%), Gaps = 9/460 (1%) Query 3 PRSRGPRRRPL-DPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYG 61 PR +GPRR P DPARRAAF+ LRAV+ RDAYANL+LP LL QR I GRDAA ATELTYG Sbjct 25 PRKQGPRRPPTRDPARRAAFDALRAVTERDAYANLILPELLRQRRITGRDAALATELTYG 84 Query 62 TCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEF 121 T RA GLLDA++ +R +DPV+ D LRLG YQLLRTR+ HAAV++TV+ + Sbjct 85 TARATGLLDAIVARCVDRKLDTVDPVVRDALRLGAYQLLRTRIPHHAAVASTVDLVREDA 144 Query 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAA 181 S AGFVN VLR ++ +DE+ W+ EL D+ +DP+ A +HPRWIA+AFA+ALG Sbjct 145 GSRVAGFVNAVLRRVSEKDEQQWLAELTADS-SDPLADLALRTSHPRWIARAFAEALGDK 203 Query 182 VGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRG--DPGRLA 239 EL A L +DD RPAVHL A+PG ++A ELA G V YSP+ V+LP G D Sbjct 204 GDELRAALEADDARPAVHLLAKPGQISAEELAAITGGDVAPYSPYGVHLPSGGGDLAESE 263 Query 240 PVRDGQALVQDEGSQLVARALTLAPV----DGDTGRWLDLCAGPGGKTALLAGLGLQCAA 295 + +G A VQDEGSQLVA A AP+ DG RWLDLCAGPGGKT +L L A Sbjct 264 VIEEGLATVQDEGSQLVAVASVNAPLGDAADGRDTRWLDLCAGPGGKTVVLGCLAQTMGA 323 Query 296 RVTAVEPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPE 355 V AVE + HRA LV + T GLPV + DGR +LD +DRVLVDAPC+GLGALRRRPE Sbjct 324 TVDAVEVAEHRARLVREATDGLPVTVHVTDGRAPELDGDYDRVLVDAPCSGLGALRRRPE 383 Query 356 ARWRRQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVH 415 ARWR+QP D+A L +LQ ELL++A L RPGGVV Y CSPHLAET G V + +R Sbjct 384 ARWRKQPGDIAELTRLQTELLASAYRLVRPGGVVTYVVCSPHLAETEGVVMASAQRLGAE 443 Query 416 ALDTRPLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 +D R F P + LG+GP VQLWPHRHGTDAMF A LR+ Sbjct 444 LIDARVAF-PGVPHLGDGPTVQLWPHRHGTDAMFCAMLRK 482 >gi|333919541|ref|YP_004493122.1| Fmu protein [Amycolicicoccus subflavus DQS3-9A1] gi|333481762|gb|AEF40322.1| Fmu protein [Amycolicicoccus subflavus DQS3-9A1] Length=447 Score = 470 bits (1209), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 281/445 (64%), Positives = 315/445 (71%), Gaps = 6/445 (1%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +DPAR A++ L AV RD+YANL+LPALL +R I GRDAAFATELTYGTCRA GLLDA+ Sbjct 1 MDPARHVAWDVLNAVRTRDSYANLMLPALLRERKITGRDAAFATELTYGTCRAFGLLDAI 60 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 IGAAA+R ID +LD+LRL YQLLRTRV AHAAVST V A + GFVN V Sbjct 61 IGAAADRDVSTIDGDVLDVLRLSGYQLLRTRVAAHAAVSTGVALAREQSGEHITGFVNAV 120 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 LR I+ + E WV EL+P DPIG AF HAHPRWIAQAFADALGA GEL LA+D Sbjct 121 LRRISQKTEAEWVAELSP---PDPIGRLAFTHAHPRWIAQAFADALGAQAGELADALAAD 177 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRG-DPGRLAPVRDGQALVQDE 251 D RP VHLAARPG +T ELA G G YSP+AV L G DP L PVRDG A VQDE Sbjct 178 DARPVVHLAARPGEITGEELALITGGEEGPYSPYAVRLESGGDPTGLEPVRDGLAFVQDE 237 Query 252 GSQLVARALTLAPVDGDT-GRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLV 310 GSQLVA A A VDGD GRWLDLCAGPGGK L+ L A + AVE +PHRA LV Sbjct 238 GSQLVALAAVRAEVDGDDRGRWLDLCAGPGGKAVLMGSLARIDGAHLDAVEVAPHRAKLV 297 Query 311 AQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAK 370 Q GLPV + DGR L PGFDRVLVDAPCTGLGALRRRPEARWRRQ +D+ LAK Sbjct 298 RQAVDGLPVTVHEADGRDPQLAPGFDRVLVDAPCTGLGALRRRPEARWRRQASDIRELAK 357 Query 371 LQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGL 430 LQRELL +A+ L RPGGVV+Y+TCSPHLAET VA+A+R+H + LD + I Sbjct 358 LQRELLDSAVKLVRPGGVVVYSTCSPHLAETSMIVANAVRKHKLAELDVSAVLGD-IQRA 416 Query 431 GEGPHVQLWPHRHGTDAMFAAALRR 455 G VQLWPHRHGTDAMF A L++ Sbjct 417 SNGKSVQLWPHRHGTDAMFVAVLKK 441 >gi|319948960|ref|ZP_08023065.1| RNA binding Sun protein [Dietzia cinnamea P4] gi|319437398|gb|EFV92413.1| RNA binding Sun protein [Dietzia cinnamea P4] Length=446 Score = 465 bits (1197), Expect = 6e-129, Method: Compositional matrix adjust. Identities = 264/444 (60%), Positives = 302/444 (69%), Gaps = 9/444 (2%) Query 20 AFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVIGAAAER 79 A + AV R AYANL LPA L + + RDAA ATELTYGT RA+GLLD +I A+ R Sbjct 2 ALTVMAAVRERAAYANLTLPAELRRAKLDTRDAALATELTYGTLRAQGLLDRIITLASSR 61 Query 80 SPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTIAGR 139 + IDP +LDL+RLG YQLL TR+ AHAAV T+VE A FVN VLR I+ R Sbjct 62 PVEEIDPPVLDLIRLGAYQLLFTRIGAHAAVDTSVEAARTAGLGRAGAFVNAVLRKISAR 121 Query 140 DERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASDDERPAVH 199 D +WV E D DP+ A AHP WIA+AFAD+LGAA GEL +LA+DD RP VH Sbjct 122 DADAWV-EALRDGVTDPVARMAIGTAHPEWIARAFADSLGAAAGELPELLAADDARPRVH 180 Query 200 LAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEGSQLVARA 259 LAARPG ++A ELA G G SP+AV+L GDPG L VR+G A VQDEGSQLVA A Sbjct 181 LAARPGAISAEELALVTGGREGELSPYAVHLDSGDPGTLDAVREGLAAVQDEGSQLVALA 240 Query 260 LTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVAQNTRGLP 318 AP+DG D GRWLDL AGPGGK LL L +T VE SPHRADLV + TR LP Sbjct 241 AARAPLDGPDGGRWLDLAAGPGGKAVLLGALAEIEGGTLTGVEVSPHRADLVREATRDLP 300 Query 319 VELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKLQRELLSA 378 V + DGR L+PGFDRVL+DAPC+GLGALRRRPEARWR+ AD+ AL LQRELL + Sbjct 301 VTVHTADGRDPGLEPGFDRVLLDAPCSGLGALRRRPEARWRKTAADIPALVSLQRELLDS 360 Query 379 AIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIA-------GLG 431 A+ L RPGGVVLYATCSPHL+ETV V +A RR V LD R + + GLG Sbjct 361 AMRLVRPGGVVLYATCSPHLSETVSVVHEAARRDDVETLDVREILADIGGAVGGRPDGLG 420 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 EGP VQLWPHRHGTDAMF AALRR Sbjct 421 EGPWVQLWPHRHGTDAMFMAALRR 444 >gi|238063929|ref|ZP_04608638.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149] gi|237885740|gb|EEP74568.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149] Length=507 Score = 464 bits (1193), Expect = 2e-128, Method: Compositional matrix adjust. Identities = 262/453 (58%), Positives = 308/453 (68%), Gaps = 14/453 (3%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +D R A++ + AV DAYANLVLP LL Q G+ GRDAAFATELTYGT R G LDA+ Sbjct 58 VDLPRHVAYQVVAAVHRDDAYANLVLPVLLRQEGLTGRDAAFATELTYGTLRHLGTLDAI 117 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVE---QAGIEFDSARAGFV 129 + AA R IDP + D LRLG YQLL TRV AHAAVS+TV+ GI GF Sbjct 118 LTDAAGRDVARIDPPVRDALRLGAYQLLHTRVPAHAAVSSTVDLVRTVGI----GATGFA 173 Query 130 NGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVL 189 N VLR +AGRD +WV +LAP ++DPIGH + ++HP+WI ++FA+ALG +GE +L Sbjct 174 NAVLREVAGRDADAWVAKLAPAYESDPIGHLSLAYSHPQWIVRSFAEALGGDLGETTRLL 233 Query 190 ASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQ 249 ++ERP VHL ARPG+ LA V G G +SP+AVYL G PG L + +G+A VQ Sbjct 234 IENNERPPVHLCARPGLADPVVLADEVGGAPGAFSPYAVYLAGGAPGDLPALAEGRAHVQ 293 Query 250 DEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADL 309 DEGSQLVA AL +AP+DG WLDLCAGPGGK LL L Q AR+TAVE S HRA L Sbjct 294 DEGSQLVANALAVAPLDGPDAHWLDLCAGPGGKAGLLGALAAQRGARLTAVEVSEHRARL 353 Query 310 VAQNTRGLPVELLRVDGRHTDLDP-----GFDRVLVDAPCTGLGALRRRPEARWRRQPAD 364 V Q TRGLPV +L DGR D FDRVLVDAPCTGLGALRRRPEARWR+QP+D Sbjct 354 VGQATRGLPVTVLHTDGRTVGADAELPEGHFDRVLVDAPCTGLGALRRRPEARWRKQPSD 413 Query 365 VAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRH--PVHALDTRPL 422 + L +LQRELLSAA+ RPGG+V Y TCSPH ET V +A RR P +D RPL Sbjct 414 LPPLTRLQRELLSAALRAARPGGLVAYVTCSPHTVETHVTVTEAARRAGVPADFVDARPL 473 Query 423 FEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 + GLG+GP VQLWPHRHGTDAMF A LRR Sbjct 474 LPAGMPGLGDGPSVQLWPHRHGTDAMFLAVLRR 506 >gi|255325042|ref|ZP_05366148.1| Fmu protein [Corynebacterium tuberculostearicum SK141] gi|255297607|gb|EET76918.1| Fmu protein [Corynebacterium tuberculostearicum SK141] Length=516 Score = 461 bits (1187), Expect = 8e-128, Method: Compositional matrix adjust. Identities = 246/444 (56%), Positives = 307/444 (70%), Gaps = 7/444 (1%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +D R AF+ +R VS DA+ANL+LP L ++ + GRDAAFATE+TYGT R G++DAV Sbjct 76 VDAPRSVAFDVVRRVSDDDAFANLILPKALRKQKLKGRDAAFATEITYGTLRTLGVVDAV 135 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I + R +AI P ++D LRLGTYQ+L TRV+ HAAV TTV + GF NG+ Sbjct 136 IAECSSRGLEAISPAVVDALRLGTYQVLYTRVEPHAAVDTTVRLVEAAGEVKAKGFANGI 195 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 +RTI ++W+ +LAP + I AF HAHP WIA++F+ LG +GELE LA+D Sbjct 196 MRTITRTPAKAWLDKLAPQGE---IAGIAFKHAHPTWIAESFSRVLG--LGELETALAAD 250 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 +RP+VHL ARPG ++A ELA GRYSP+AVY+ GDPG+L PVR G A VQDEG Sbjct 251 SDRPSVHLVARPGEISAEELALMTGNEEGRYSPYAVYMESGDPGQLEPVRQGLAAVQDEG 310 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQL+ARA+ AP++G DTGRWLDLCAGPGGK AL+ L +A V AVE SPHRA L+ Sbjct 311 SQLIARAVCEAPLEGEDTGRWLDLCAGPGGKAALMGALARIDSAHVDAVEVSPHRAALIE 370 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 + LPV++ DGR+ + GFDRVLVDAPC+GLGALRRRPEARWR+ AD+A L +L Sbjct 371 KTVSDLPVDVRVADGRNPGVGEGFDRVLVDAPCSGLGALRRRPEARWRKSEADIAELNQL 430 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 Q ELLS+A+ L RPGGVV+Y+TCSP L ET G V A+R LD L P + +G Sbjct 431 QFELLSSALNLVRPGGVVIYSTCSPDLRETRGIVDRAVRELGAEELDAHALI-PDMGDVG 489 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 VQ+WPHRHGTDAMF AALRR Sbjct 490 HEKSVQMWPHRHGTDAMFFAALRR 513 >gi|343924561|ref|ZP_08764109.1| putative rRNA methyltransferase [Gordonia alkanivorans NBRC 16433] gi|343765496|dbj|GAA11035.1| putative rRNA methyltransferase [Gordonia alkanivorans NBRC 16433] Length=459 Score = 461 bits (1186), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 268/454 (60%), Positives = 322/454 (71%), Gaps = 4/454 (0%) Query 6 RGPRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRA 65 R R++ LDPAR AA +TLRAV RDAYANLVLP +L R I GRDAAFATEL YGT RA Sbjct 5 RKLRQKDLDPARVAARDTLRAVRERDAYANLVLPKMLRDRKIEGRDAAFATELAYGTARA 64 Query 66 RGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSAR 125 +GLLDAVI AAA+R + ID +LD+LRLG YQLLRTRV +HAAVST+V+ E Sbjct 65 QGLLDAVIAAAAKRPVEEIDGPVLDVLRLGAYQLLRTRVGSHAAVSTSVDLVRSENGMGP 124 Query 126 AGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGEL 185 +GF N VLR ++ + E WV ELAP D +G+ AF +AHPRWIA F DALG + G+L Sbjct 125 SGFANAVLRKVSQKTEEMWVDELAPSPAEDLVGYLAFQYAHPRWIAGVFRDALGGSAGQL 184 Query 186 EAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQ 245 +A LA+DDERP VHL ARPG +TA ELA G G YSP+ VYLP GDPG + +R+G Sbjct 185 QAALAADDERPPVHLVARPGYITAEELALTSGGEEGDYSPYCVYLPGGDPGDVEAIREGY 244 Query 246 ALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPH 305 A VQDEGSQL+ARA+T+A V D+GRWLD+CAGPGGK AL+ L AA + A+E S H Sbjct 245 AGVQDEGSQLIARAVTVAEVADDSGRWLDMCAGPGGKAALIGALAEIDAACLDAIEVSKH 304 Query 306 RADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADV 365 RA+L+ + LPV + D R + L+PG+DR+L+DAPC+GLG+LRRRPE+RWRR ADV Sbjct 305 RAELIRKVVNDLPVTIHVADARSSGLEPGYDRILLDAPCSGLGSLRRRPESRWRRTAADV 364 Query 366 AALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRR-HPVHALDTRPLFE 424 L LQ+ELL+ A+ L +PGGVV Y+TCSPH AET VAD L LD RPL Sbjct 365 EELVVLQKELLTEALRLVKPGGVVAYSTCSPHPAETTAVVADVLASVDGARQLDARPLVT 424 Query 425 PVIAG---LGEGPHVQLWPHRHGTDAMFAAALRR 455 G LG+GPHVQLWPH HGTDAMF AAL R Sbjct 425 VGKLGPELLGDGPHVQLWPHIHGTDAMFLAALTR 458 >gi|227503566|ref|ZP_03933615.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium accolens ATCC 49725] gi|227075602|gb|EEI13565.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium accolens ATCC 49725] Length=484 Score = 461 bits (1185), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 246/444 (56%), Positives = 303/444 (69%), Gaps = 7/444 (1%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +DPAR AF+ +R VS DA+ANLVLP L ++ + GRDAAFATE+TYGT R G+LDAV Sbjct 41 VDPARAVAFDVVRRVSEEDAFANLVLPKALRKQKLTGRDAAFATEITYGTLRTLGVLDAV 100 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I + R +AI PV++D LRLGTYQ+L TRV+ HAAV T+V + GF NG+ Sbjct 101 IAQCSSRELEAISPVVIDALRLGTYQVLYTRVEPHAAVDTSVRLVVAGGEEKAKGFANGI 160 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 LRTI W+ LAP+ + I AF HAHP WIA++FA + EL AVLA+D Sbjct 161 LRTITRTPPNEWLKRLAPEGE---IAGLAFRHAHPTWIAESFARVVDPE--ELPAVLAAD 215 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 ERP+VHL ARPG ++A ELA G YSP+AVY+ GDPG+L PV+ G A VQDEG Sbjct 216 SERPSVHLVARPGEISAEELALITGNEEGTYSPYAVYMDSGDPGQLEPVQQGMAAVQDEG 275 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQL+ARA+ PV G D GRWLDLCAGPGGK AL+ L +A V AVE SPHRA L+ Sbjct 276 SQLIARAVCEVPVSGTDQGRWLDLCAGPGGKAALMGALARIESAHVDAVEVSPHRAKLIE 335 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 + +GLPV + DGR+ + GFDR+LVDAPC+GLGALRRRPEARWR+ AD+A L+ L Sbjct 336 KTVQGLPVTVHVADGRNPQVGSGFDRILVDAPCSGLGALRRRPEARWRKSEADIAELSTL 395 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 Q ELLS+A+ L RPGGVV+Y+TCSP L ET V A+ + LD R F P + +G Sbjct 396 QFELLSSALKLVRPGGVVVYSTCSPDLRETRDIVDQAVEKLGAQELDARE-FIPDMGNVG 454 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 + VQ+WPHRHGTDAMF A LRR Sbjct 455 KEKSVQMWPHRHGTDAMFMAVLRR 478 >gi|134098684|ref|YP_001104345.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133911307|emb|CAM01420.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length=430 Score = 459 bits (1181), Expect = 4e-127, Method: Compositional matrix adjust. Identities = 274/427 (65%), Positives = 311/427 (73%), Gaps = 3/427 (0%) Query 30 RDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVIGAAAERSPQAIDPVLL 89 RDAYANL LPALL QR I GRDAA ATELTYG CRA+GLLDAVIG + R IDP LL Sbjct 4 RDAYANLALPALLKQRRISGRDAALATELTYGACRAQGLLDAVIGECSARPLDGIDPELL 63 Query 90 DLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTIAGRDERSWVGELA 149 D LRLG YQLLRTR+ AHAAV++TV+ E S +AGF N VLR I+ RDE+ W+ LA Sbjct 64 DALRLGAYQLLRTRIPAHAAVASTVDIVRAESGSRQAGFANAVLRRISERDEQEWIDRLA 123 Query 150 PDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASDDERPAVHLAARPGVLTA 209 P +DP+GH A +AHPRWIAQ+FADALG+ ELEA LA+DD RPAVHL ARPG ++A Sbjct 124 PARDDDPVGHLALRYAHPRWIAQSFADALGSVGAELEAALAADDARPAVHLTARPGEISA 183 Query 210 GELARAVRGTVGRYSPFAVYLPR--GDPGRLAPVRDGQALVQDEGSQLVARALTLAPVDG 267 ELA G YSP+ V+L GDPG L PVR+G A VQDEGSQLVA AL+ V G Sbjct 184 EELAAITGGDEAPYSPYGVHLDSGAGDPGDLEPVREGFASVQDEGSQLVAVALSRVEVQG 243 Query 268 DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVAQNTRGLPVELLRVDGR 327 RWLDLCAGPGGK LL L + AVE +PHRADLV ++T GL VE+ DGR Sbjct 244 PDLRWLDLCAGPGGKANLLGSLVTMDGGTLDAVEQAPHRADLVRRSTDGLSVEVHVADGR 303 Query 328 HTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKLQRELLSAAIALTRPGG 387 L+PG+DRVLVDAPCTGLGALRRRPEARWRR+P DVA LAKLQRELL +A+ LTR GG Sbjct 304 DPGLEPGYDRVLVDAPCTGLGALRRRPEARWRRRPDDVAELAKLQRELLLSAVRLTREGG 363 Query 388 VVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLGEGPHVQLWPHRHGTDA 447 VV Y CSPHL+ET G V+D +RR V LD RP F P + LG+GP VQLWPHRHGTDA Sbjct 364 VVAYVVCSPHLSETEGVVSDVVRRAGVEQLDARPYF-PGVPDLGDGPAVQLWPHRHGTDA 422 Query 448 MFAAALR 454 MF A LR Sbjct 423 MFCALLR 429 >gi|38233907|ref|NP_939674.1| hypothetical protein DIP1321 [Corynebacterium diphtheriae NCTC 13129] gi|38200168|emb|CAE49849.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length=485 Score = 458 bits (1178), Expect = 1e-126, Method: Compositional matrix adjust. Identities = 254/467 (55%), Positives = 307/467 (66%), Gaps = 20/467 (4%) Query 2 TPRSRGPRR-----------RPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGR 50 T RSR P+R R +D R AF ++ V AYANL LP +L Q + GR Sbjct 25 TNRSRQPKRSSQSDPRWKPLRGIDLPRSVAFWVIQRVEIDAAYANLTLPKVLKQSKLSGR 84 Query 51 DAAFATELTYGTCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAV 110 DAAFATELTYGT R +G+LD VI + R +A+ P + LRLG YQLL TRV AHAAV Sbjct 85 DAAFATELTYGTLRTQGVLDTVIAECSSRELEALKPEVRAALRLGAYQLLYTRVGAHAAV 144 Query 111 STTVE-QAGIEFDSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRW 169 TTV I D A+ GFVNGVLRTI+ +SW+ +L P + + I AF HAHP W Sbjct 145 DTTVRIMEAIGQDRAK-GFVNGVLRTISRTSPQSWIEKLTPSGEVESI---AFQHAHPAW 200 Query 170 IAQAFADALGAAVGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVY 229 IA++F+ +G + ELEA L++D ERP VHL ARPG ++A ELA V G G+YSP+AVY Sbjct 201 IARSFSQIVG--MNELEAALSADSERPKVHLVARPGEMSAEELALIVGGDEGKYSPYAVY 258 Query 230 LPRGDPGRLAPVRDGQALVQDEGSQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAG 288 L GDPG L PVR+G A VQDEGSQL+ARA+T AP+ G D G+WLDLCAGPGGK ALL Sbjct 259 LESGDPGALEPVREGLAAVQDEGSQLIARAVTEAPIHGEDQGKWLDLCAGPGGKAALLGA 318 Query 289 LGLQCAARVTAVEPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLG 348 + A V AVE S HRA L+ RGLPV++ DGR L PG+DRVLVDAPC+GLG Sbjct 319 IARIDGATVDAVEVSKHRAKLIENIVRGLPVKVTVGDGRSPGLAPGYDRVLVDAPCSGLG 378 Query 349 ALRRRPEARWRRQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADA 408 ALRRRPEARWR+Q D+ L KLQ +LL +A+ L R GG+V+Y+TCSP L ET V Sbjct 379 ALRRRPEARWRKQETDIEELTKLQSQLLESALRLVRTGGIVVYSTCSPDLRETRQIVDRI 438 Query 409 LRRHPVHALDTRPLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 LR H V L+ L P + GE V +WPHRHGTDAMF A LR+ Sbjct 439 LRSHEVEELNAAELV-PSMENTGEYKSVHMWPHRHGTDAMFFAVLRK 484 >gi|300784671|ref|YP_003764962.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis mediterranei U32] gi|299794185|gb|ADJ44560.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis mediterranei U32] gi|340526094|gb|AEK41299.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis mediterranei S699] Length=474 Score = 457 bits (1177), Expect = 1e-126, Method: Compositional matrix adjust. Identities = 269/456 (59%), Positives = 319/456 (70%), Gaps = 4/456 (0%) Query 3 PRSRGPRRRP-LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYG 61 PR GPRR P +DPAR+AAF+ L AV +DAYANLVLP LL +R I GRDAA ATELTYG Sbjct 19 PRKEGPRRPPEVDPARQAAFDVLAAVRTKDAYANLVLPDLLRERRITGRDAALATELTYG 78 Query 62 TCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEF 121 T RA+GLLDA+I + AER + DP +LD LRLG YQLLRTR+ HAAV++TV+ E Sbjct 79 TSRAQGLLDAIIESCAERPLKQTDPAVLDALRLGVYQLLRTRIPEHAAVTSTVDLVRAEA 138 Query 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAA 181 S GF N +LR ++ +DE +W+ ELAPD DPIG A AHPRWIA++FA+ALG Sbjct 139 GSWATGFANAILRKVSEKDETTWLDELAPDEAADPIGAYALRTAHPRWIARSFAEALGDK 198 Query 182 VGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLP--RGDPGRLA 239 L+A L +DD RP VHL ARPG ++A ELA G YSP+ V LP GDP Sbjct 199 GAGLKAALEADDARPEVHLVARPGEISADELAAITGGDPAPYSPYGVRLPAGAGDPADAE 258 Query 240 PVRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTA 299 PVR+ A VQDEGSQL A A T P++G RWLDLCAGPGGK ALL L A V A Sbjct 259 PVRERLAAVQDEGSQLCAIAATKVPLEGSDERWLDLCAGPGGKAALLGALAAMSGAAVDA 318 Query 300 VEPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWR 359 VE +PHRA LV + T GLPV++ DGR + L+PG+DR+LVDAPC+GLGALRRRPEARWR Sbjct 319 VEKAPHRAKLVEKATTGLPVKVHVGDGRESGLEPGYDRILVDAPCSGLGALRRRPEARWR 378 Query 360 RQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDT 419 RQP+DVA L KLQ EL++AA L RPGG + Y CSPHLAET G A+ RR +D Sbjct 379 RQPSDVADLTKLQGELITAAYDLLRPGGALTYVVCSPHLAETEGVFAETARRLKAEVVDA 438 Query 420 RPLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 R F P + LG+GP+VQLWPHRHGTDAMF A LR+ Sbjct 439 REFF-PGVPELGDGPYVQLWPHRHGTDAMFCAVLRK 473 >gi|311739502|ref|ZP_07713337.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC 33035] gi|311305318|gb|EFQ81386.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC 33035] Length=516 Score = 457 bits (1176), Expect = 1e-126, Method: Compositional matrix adjust. Identities = 245/444 (56%), Positives = 308/444 (70%), Gaps = 7/444 (1%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +D R AF+ +R VS DA+ANL+LP L ++ + GRDAAFATE+TYGT R G++DAV Sbjct 76 VDAPRAVAFDVVRRVSDDDAFANLILPRALRKQKLKGRDAAFATEITYGTLRTLGVVDAV 135 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I + R +AI P ++D LRLGTYQ+L TRV+ HAAV TTV + GF NG+ Sbjct 136 IAECSSRGLEAISPAVVDALRLGTYQVLYTRVEPHAAVDTTVRLVEAAGEVKAKGFANGI 195 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 +RTI+ ++W+ +LAP + I AF HAHP WIA++F+ LG +GELEA LA+D Sbjct 196 MRTISRTPAKTWLDKLAPQGE---IACIAFKHAHPTWIAESFSRVLG--LGELEAALAAD 250 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 +RP+VHL ARPG ++A ELA G YSP+AVY+ GDPG+L PVR G A VQDEG Sbjct 251 SDRPSVHLVARPGEISAEELALMTGNEEGCYSPYAVYMESGDPGQLEPVRQGLAAVQDEG 310 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQL+ARA+ AP++G D+GRWLDLCAGPGGK AL+ L +A V AVE SPHRA L+ Sbjct 311 SQLIARAVCEAPLEGEDSGRWLDLCAGPGGKAALMGALARIDSAHVDAVEVSPHRAALIE 370 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 + LPV++ DGR+ + GFDRVLVDAPC+GLGALRRRPEARWR+ AD+A L +L Sbjct 371 KTVSDLPVDVHVADGRNPGVGEGFDRVLVDAPCSGLGALRRRPEARWRKSEADIAELNQL 430 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 Q ELLS+A+ L RPGGVV+Y+TCSP L ET G V A+R LD L P + +G Sbjct 431 QFELLSSALNLVRPGGVVIYSTCSPDLRETRGIVDRAVRELGAEELDAHALI-PDMGDVG 489 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 VQ+WPHRHGTDAMF AALRR Sbjct 490 HEKSVQMWPHRHGTDAMFFAALRR 513 >gi|306836175|ref|ZP_07469159.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] gi|304567896|gb|EFM43477.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] Length=484 Score = 457 bits (1176), Expect = 2e-126, Method: Compositional matrix adjust. Identities = 243/444 (55%), Positives = 302/444 (69%), Gaps = 7/444 (1%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +DPAR AF+ +R VS DA+ANLVLP L ++ + GRDAAFATE+TYGT R G+LDAV Sbjct 41 VDPARAVAFDVVRRVSEEDAFANLVLPKALRKQKLSGRDAAFATEITYGTLRTLGVLDAV 100 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I + R +AI PV++D LRLGTYQ+L TRV+ HAAV T+V + GF NG+ Sbjct 101 IAQCSSRELEAISPVVIDALRLGTYQVLYTRVEPHAAVDTSVRLVVAGGEEKAKGFANGI 160 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 LRTI W+ LAP+ + + AF HAHP WIA++FA + EL A LA+D Sbjct 161 LRTITRTPPNEWLKRLAPEGE---VAGLAFRHAHPTWIAESFARVVDPE--ELPAALAAD 215 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 ERP+VHL ARPG ++A ELA G YSP+AVY+ GDPG+L PV+ G A VQDEG Sbjct 216 SERPSVHLVARPGEISAEELALITGNEEGTYSPYAVYMDSGDPGQLEPVQQGMAAVQDEG 275 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQL+ARA+ PV+G D GRWLDLCAGPGGK AL+ L +A V AVE SPHRA L+ Sbjct 276 SQLIARAVCEVPVNGTDQGRWLDLCAGPGGKAALIGALARIESAHVDAVEVSPHRAKLIE 335 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 + +GLPV + DGR+ + GFDR+LVDAPC+GLGALRRRPEARWR+ D+A L+ L Sbjct 336 KTVQGLPVTVHVADGRNPQVGSGFDRILVDAPCSGLGALRRRPEARWRKSEDDIAELSTL 395 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 Q ELLS+A+ L RPGGVV+Y+TCSP L ET V A+ + LD R F P + +G Sbjct 396 QFELLSSALKLVRPGGVVVYSTCSPDLRETRDIVDQAVEKLGAQELDARD-FIPDMGNVG 454 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 + VQ+WPHRHGTDAMF A LRR Sbjct 455 KEKSVQMWPHRHGTDAMFMAVLRR 478 >gi|225021364|ref|ZP_03710556.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii ATCC 33806] gi|305681148|ref|ZP_07403955.1| putative ribosomal RNA small subunit methyltransferase B [Corynebacterium matruchotii ATCC 14266] gi|224945746|gb|EEG26955.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii ATCC 33806] gi|305659353|gb|EFM48853.1| putative ribosomal RNA small subunit methyltransferase B [Corynebacterium matruchotii ATCC 14266] Length=491 Score = 457 bits (1175), Expect = 3e-126, Method: Compositional matrix adjust. Identities = 246/444 (56%), Positives = 298/444 (68%), Gaps = 6/444 (1%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +D AR AF+ L V+ YANL LP L + + RDAAFATE+TYGT R +G+LD V Sbjct 47 VDLARAVAFDVLYRVNVEGTYANLALPKALTEYRLKRRDAAFATEITYGTLRVQGILDIV 106 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I + R +IDP +L +RLG YQLL TRV+ HAAV + V+ + GF NG+ Sbjct 107 IAHCSSRPLDSIDPAVLGAIRLGAYQLLYTRVEPHAAVDSAVKIVAATGNEQAKGFANGI 166 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 LR I+ +W +L P D + AF HAHP W+A++F ALG EL+A LA+D Sbjct 167 LRKISRTTPEAWWEKLQP---ADELAAIAFRHAHPEWVAKSFEQALGGR-DELDAALAAD 222 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 ERP VHL ARPG +TA ELA G G YSP+AVYLP GDPGR+ VRDG A VQDEG Sbjct 223 SERPIVHLVARPGEITAEELALMTGGDEGTYSPYAVYLPGGDPGRIDAVRDGLAAVQDEG 282 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQL+ARALT AP+DG D G WLDLCAGPGGK ALL + +A V AVE PHRA LV Sbjct 283 SQLIARALTEAPLDGPDGGHWLDLCAGPGGKAALLGAIARIESATVDAVEVQPHRAKLVQ 342 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 Q R LPV + +DGR+ + FDRVLVDAPC+GLGALRRRPEARWR+Q +D+A LA+L Sbjct 343 QTVRDLPVTVHTMDGRNPSFEYQFDRVLVDAPCSGLGALRRRPEARWRKQESDIAQLAQL 402 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 Q ELL++AI LTRPGG+++Y+TCSP L ET G V AL HPV LD PL P + G Sbjct 403 QYELLASAINLTRPGGIIVYSTCSPDLRETRGVVNKALENHPVVELDAHPLV-PNMENTG 461 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 E VQ+WPHRH TDAMF A L++ Sbjct 462 EEKSVQMWPHRHHTDAMFFAVLKK 485 >gi|25028274|ref|NP_738328.1| hypothetical protein CE1718 [Corynebacterium efficiens YS-314] gi|259507332|ref|ZP_05750232.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314] gi|23493558|dbj|BAC18528.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165043|gb|EEW49597.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314] Length=490 Score = 455 bits (1171), Expect = 6e-126, Method: Compositional matrix adjust. Identities = 251/444 (57%), Positives = 298/444 (68%), Gaps = 7/444 (1%) Query 13 LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAV 72 +D R A+E L V DAYANLVLP LL ++ + RDA FATE+TYGT R GLLDAV Sbjct 52 VDKPREIAYEVLDRVRTGDAYANLVLPRLLTKQKLDTRDAGFATEITYGTLRNLGLLDAV 111 Query 73 IGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGV 132 I +AA R + IDP +LD+LR+G YQ+L TRV+ HAAV TTV+ G GF N V Sbjct 112 ISSAANRPVKDIDPEVLDVLRIGAYQVLFTRVEDHAAVDTTVKMVGGLKKFNATGFANAV 171 Query 133 LRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLASD 192 +RTI W+ +L P+ + I AF AHP WIAQ+F+ L A ELE LA+D Sbjct 172 MRTITRTPAEQWLDKLEPEGE---IARVAFRTAHPEWIAQSFSRLLPAE--ELEDALAAD 226 Query 193 DERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDEG 252 ERP VHL ARPG ++A ELA G GRYSP+AVYL GDPG + PV+ G A VQDEG Sbjct 227 SERPVVHLVARPGEISAEELALITGGEEGRYSPYAVYLEGGDPGDIDPVQQGLAAVQDEG 286 Query 253 SQLVARALTLAPVDG-DTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 SQL+ARAL APV+G D GRWLDLCAGPGGK AL+ L ARV AVE S HRA LV Sbjct 287 SQLIARALVEAPVEGEDHGRWLDLCAGPGGKAALVGALARMDGARVDAVEVSDHRAKLVE 346 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 ++ GLPV++ DGR +LD G+DR LVDAPC+GLGALRRRPEARWR+Q +D+A L L Sbjct 347 RSVSGLPVKVHVGDGRTINLDDGYDRALVDAPCSGLGALRRRPEARWRKQESDIAPLNTL 406 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 Q ELL +AI RPGGVV+Y+TCSP L ET V AL P+ LD F P + G Sbjct 407 QYELLESAINRVRPGGVVVYSTCSPDLRETREVVDRALAALPIEELDA-AAFMPGMDNTG 465 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 EG VQ+WPHRHGTDAMF A LR+ Sbjct 466 EGKSVQMWPHRHGTDAMFVAILRK 489 >gi|298256363|gb|ADI71472.1| putative tRNA/rRNA cytosine-C5-methylase [Amycolatopsis orientalis subsp. vinearia] Length=474 Score = 455 bits (1170), Expect = 8e-126, Method: Compositional matrix adjust. Identities = 270/456 (60%), Positives = 319/456 (70%), Gaps = 4/456 (0%) Query 3 PRSRGPRRRP-LDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYG 61 PR GPRR P +DPAR+AAF+ L AV +DAYANLVLP LL +R I GRDAA ATEL YG Sbjct 19 PRKEGPRRPPSVDPARQAAFDVLAAVRTKDAYANLVLPDLLRERRITGRDAALATELAYG 78 Query 62 TCRARGLLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEF 121 RA+GLLDAVI + AER DP +LD LRLG YQLLRTR+ HAAV++TV+ E Sbjct 79 ASRAQGLLDAVIESCAERPLSQTDPAVLDALRLGVYQLLRTRIPGHAAVTSTVDLVRAEG 138 Query 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAA 181 S GF N V+R ++ +DE +W+ ELAPD DPIG A AHPRWIA++FA+ALG Sbjct 139 GSWATGFANAVMRKVSEKDEAAWLDELAPDDAADPIGAYALRTAHPRWIARSFAEALGDK 198 Query 182 VGELEAVLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLP--RGDPGRLA 239 L+A L +DD RP VHL ARPG ++A ELA G YSP+ V+LP GDP + Sbjct 199 GAGLKAALEADDARPEVHLVARPGEISADELAAITGGDPAPYSPYGVHLPAGAGDPAGME 258 Query 240 PVRDGQALVQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTA 299 PVR+ A VQDEGSQL A A T PV+G RWLDLCAGPGGK ALL L A V A Sbjct 259 PVRERLAAVQDEGSQLCAIAATKVPVEGTDERWLDLCAGPGGKAALLGALAALSGATVDA 318 Query 300 VEPSPHRADLVAQNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWR 359 VE +PHRA LV + T GLPV++ DGR + L+PG+DR+LVDAPC+GLGALRRRPEARWR Sbjct 319 VEIAPHRAKLVEKATTGLPVKVHVADGRESGLEPGYDRILVDAPCSGLGALRRRPEARWR 378 Query 360 RQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDT 419 RQP+DVA L KLQ EL++AA AL RPGG + Y CSPHLAET G + + RR LD Sbjct 379 RQPSDVADLTKLQGELINAAYALLRPGGALTYVVCSPHLAETEGVLTETARRLKAEVLDA 438 Query 420 RPLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRR 455 R LF P + LG+GP+VQLWPHRHGTDAMF LR+ Sbjct 439 RGLF-PGVPELGDGPYVQLWPHRHGTDAMFCGVLRK 473 >gi|227549211|ref|ZP_03979260.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium lipophiloflavum DSM 44291] gi|227078665|gb|EEI16628.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium lipophiloflavum DSM 44291] Length=480 Score = 453 bits (1165), Expect = 3e-125, Method: Compositional matrix adjust. Identities = 250/444 (57%), Positives = 293/444 (66%), Gaps = 6/444 (1%) Query 14 DPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVI 73 D AR AAFE + V+ DAYANLVLP LL +R I GRDAAFATEL YGT RA+G+LDAVI Sbjct 40 DSAREAAFEVVHRVATDDAYANLVLPNLLRERSITGRDAAFATELAYGTLRAQGVLDAVI 99 Query 74 GAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVL 133 + R I P +L LRLG YQLL RVD HAAV T+V GF N +L Sbjct 100 ARCSSRELGDIAPEVLAALRLGAYQLLYMRVDDHAAVDTSVRLVEAAGAGKAKGFANAIL 159 Query 134 RTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALG--AAVGELEAVLAS 191 RTI+ + W+ EL P NDP+ AF +HP WIA++FA ALG A GELEA LA+ Sbjct 160 RTISRTPAQQWLDELTP---NDPLAAVAFRTSHPEWIARSFATALGESGAEGELEAALAA 216 Query 192 DDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQDE 251 D +RP VHL ARPG ++A ELA G G YSP+AVYL GDPG L PVRDG A VQDE Sbjct 217 DSQRPVVHLVARPGEISAAELAAITGGDEGAYSPYAVYLHEGDPGALEPVRDGLAGVQDE 276 Query 252 GSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLVA 311 GSQL+ARAL V D GRWLDLCAGPGGK ALL L A V AVE S HRA+L+ Sbjct 277 GSQLIARALAEVDVADDAGRWLDLCAGPGGKAALLGSLAGIEGAHVDAVEISEHRAELIR 336 Query 312 QNTRGLPVELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKL 371 + GLPV + DGR L PG+DRVLVDAPC+GLGALRRRPEARW++Q +++ AL +L Sbjct 337 KIVGGLPVSVTVADGRDPGLQPGYDRVLVDAPCSGLGALRRRPEARWKKQESEIGALTRL 396 Query 372 QRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIAGLG 431 Q ELL +A+ L +PGGVV+Y+TCSP + ET G V L LD P + G Sbjct 397 QSELLESALTLVKPGGVVVYSTCSPDVRETRGVVDAVLAEGGAEELDASTWLPP-MENTG 455 Query 432 EGPHVQLWPHRHGTDAMFAAALRR 455 E VQ+WPHRHGTDAMF A LR+ Sbjct 456 EAKSVQMWPHRHGTDAMFFAVLRK 479 >gi|302866833|ref|YP_003835470.1| Fmu (Sun) domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302569692|gb|ADL45894.1| Fmu (Sun) domain protein [Micromonospora aurantiaca ATCC 27029] Length=549 Score = 452 bits (1162), Expect = 7e-125, Method: Compositional matrix adjust. Identities = 266/456 (59%), Positives = 314/456 (69%), Gaps = 8/456 (1%) Query 8 PRRRPLDPARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARG 67 P R +D R+ A+E + AV DAYANLVLPA+L + G+ GRDAAFATELTYGT R G Sbjct 95 PARPAVDLPRQIAYEAIAAVHRDDAYANLVLPAMLREAGLTGRDAAFATELTYGTLRHTG 154 Query 68 LLDAVIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAGIEFDSARAG 127 LDA++ AA R Q IDP + D LRLG YQ+L TRV AHAAVS+TV+ G Sbjct 155 TLDAIVTDAAGRDVQRIDPPVRDALRLGAYQILHTRVPAHAAVSSTVDLV-RSVGPGATG 213 Query 128 FVNGVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEA 187 F N VLR I RD +WV +LAP + DPIGH A ++HP+WI ++FA+ALGA +GE Sbjct 214 FANAVLREITSRDADAWVAKLAPAQETDPIGHLALAYSHPQWIVRSFAEALGADMGETTR 273 Query 188 VLASDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQAL 247 +L D+ERP VHL ARPG+ LA V G G +SP+AVYLP G PG L V DG+A Sbjct 274 LLIEDNERPPVHLCARPGLADPVALADEVGGAPGAFSPYAVYLPGGAPGDLPAVADGRAH 333 Query 248 VQDEGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRA 307 VQDEGSQLVA AL AP+DG GRWLDLCAGPGGK+ LL L AR+TAVE + HRA Sbjct 334 VQDEGSQLVADALVAAPLDGPDGRWLDLCAGPGGKSGLLGALAATRGARLTAVEVAEHRA 393 Query 308 DLVAQNTRGLPVELLRVDGRHTDLDPG-----FDRVLVDAPCTGLGALRRRPEARWRRQP 362 LVAQ TRGLPV ++ DGR DP FDRVLVDAPCTGLGALRRRPE+RWRRQP Sbjct 394 RLVAQATRGLPVTVVHTDGRTVGSDPKLPEEHFDRVLVDAPCTGLGALRRRPESRWRRQP 453 Query 363 ADVAALAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRR--HPVHALDTR 420 +D+ L +LQRELL+A + RPGG+V Y TCSPH+ ET V +A RR V +D R Sbjct 454 SDLPPLTRLQRELLTAGLRAARPGGLVAYVTCSPHVVETHVTVTEAARRCGFDVDFVDAR 513 Query 421 PLFEPVIAGLGEGPHVQLWPHRHGTDAMFAAALRRL 456 PL + GLG+GP VQLWPHRHGTDAMF A LRR+ Sbjct 514 PLLPAGMPGLGDGPTVQLWPHRHGTDAMFLAVLRRV 549 Lambda K H 0.322 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 955199590996 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40