BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1413
Length=171
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608551|ref|NP_215929.1| hypothetical protein Rv1413 [Mycoba... 337 3e-91
gi|289574082|ref|ZP_06454309.1| alanine racemase domain-containi... 335 1e-90
gi|340626427|ref|YP_004744879.1| hypothetical protein MCAN_14291... 335 1e-90
gi|119963284|ref|YP_946033.1| alanine racemase N-terminal domain... 152 2e-35
gi|119716914|ref|YP_923879.1| alanine racemase domain-containing... 146 1e-33
gi|326381918|ref|ZP_08203611.1| hypothetical protein SCNU_03202 ... 144 4e-33
gi|169628346|ref|YP_001701995.1| hypothetical protein MAB_1253c ... 143 1e-32
gi|337763319|emb|CCB72027.1| Predicted amino acid aldolase or ra... 138 3e-31
gi|308178610|ref|YP_003918016.1| alanine racemase-like protein [... 130 7e-29
gi|302552096|ref|ZP_07304438.1| alanine racemase domain-containi... 124 4e-27
gi|309812008|ref|ZP_07705774.1| alanine racemase, N-terminal dom... 121 3e-26
gi|262201693|ref|YP_003272901.1| alanine racemase domain-contain... 117 6e-25
gi|256824351|ref|YP_003148311.1| amino acid aldolase or racemase... 114 6e-24
gi|343928294|ref|ZP_08767747.1| hypothetical protein GOALK_112_0... 103 1e-20
gi|333919914|ref|YP_004493495.1| putative amino acid racemase [A... 95.9 2e-18
gi|19553808|ref|NP_601810.1| hypothetical protein NCgl2520 [Cory... 95.5 2e-18
gi|21325381|dbj|BAC00003.1| Hypothetical protein [Corynebacteriu... 95.1 3e-18
gi|331694412|ref|YP_004330651.1| alanine racemase domain-contain... 93.2 1e-17
gi|344046326|gb|EGV41992.1| hypothetical protein CgS9114_01205 [... 89.7 1e-16
gi|145296605|ref|YP_001139426.1| hypothetical protein cgR_2513 [... 88.6 3e-16
gi|302387296|ref|YP_003823118.1| alanine racemase domain protein... 83.6 1e-14
gi|290962430|ref|YP_003493612.1| amino acid racemase [Streptomyc... 82.0 2e-14
gi|338813121|ref|ZP_08625257.1| alanine racemase domain protein ... 82.0 3e-14
gi|345017193|ref|YP_004819546.1| alanine racemase domain-contain... 80.5 7e-14
gi|333997957|ref|YP_004530569.1| alanine racemase domain-contain... 78.2 4e-13
gi|298242855|ref|ZP_06966662.1| alanine racemase domain protein ... 77.8 6e-13
gi|302390371|ref|YP_003826192.1| alanine racemase domain protein... 77.4 8e-13
gi|266619447|ref|ZP_06112382.1| alanine racemase domain protein ... 73.9 7e-12
gi|337278875|ref|YP_004618346.1| hypothetical protein Rta_12420 ... 73.9 8e-12
gi|254976416|ref|ZP_05272888.1| putative amino acid racemase [Cl... 73.2 1e-11
gi|255656805|ref|ZP_05402214.1| putative amino acid racemase [Cl... 72.0 3e-11
gi|126700435|ref|YP_001089332.1| amino acid racemase [Clostridiu... 72.0 3e-11
gi|255101991|ref|ZP_05330968.1| putative amino acid racemase [Cl... 70.9 6e-11
gi|337751166|ref|YP_004645328.1| putative amino acid aldolase or... 70.5 8e-11
gi|319792881|ref|YP_004154521.1| alanine racemase domain-contain... 70.1 1e-10
gi|269837390|ref|YP_003319618.1| alanine racemase domain-contain... 70.1 1e-10
gi|119715651|ref|YP_922616.1| alanine racemase domain-containing... 70.1 1e-10
gi|89899781|ref|YP_522252.1| alanine racemase-like protein [Rhod... 68.9 3e-10
gi|239834177|ref|ZP_04682505.1| alanine racemase domain-containi... 68.6 3e-10
gi|289678897|ref|ZP_06499787.1| alanine racemase, N-terminal [Ps... 68.6 3e-10
gi|153011211|ref|YP_001372425.1| alanine racemase domain-contain... 68.6 3e-10
gi|330899492|gb|EGH30911.1| alanine racemase [Pseudomonas syring... 68.2 4e-10
gi|298244439|ref|ZP_06968245.1| alanine racemase domain protein ... 67.8 5e-10
gi|66046627|ref|YP_236468.1| alanine racemase, N-terminal [Pseud... 67.8 6e-10
gi|332285912|ref|YP_004417823.1| alanine racemase-like protein [... 67.4 6e-10
gi|330972501|gb|EGH72567.1| alanine racemase [Pseudomonas syring... 67.4 7e-10
gi|302188653|ref|ZP_07265326.1| alanine racemase, N-terminal [Ps... 67.4 8e-10
gi|345048631|gb|EGW52457.1| hypothetical protein HMPREF1022_0058... 66.6 1e-09
gi|330986553|gb|EGH84656.1| alanine racemase domain-containing p... 66.6 1e-09
gi|256376688|ref|YP_003100348.1| alanine racemase domain-contain... 66.6 1e-09
>gi|15608551|ref|NP_215929.1| hypothetical protein Rv1413 [Mycobacterium tuberculosis H37Rv]
gi|31792607|ref|NP_855100.1| hypothetical protein Mb1448 [Mycobacterium bovis AF2122/97]
gi|121637343|ref|YP_977566.1| hypothetical protein BCG_1474 [Mycobacterium bovis BCG str. Pasteur
1173P2]
56 more sequence titles
Length=171
Score = 337 bits (864), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 170/171 (99%), Positives = 171/171 (100%), Gaps = 0/171 (0%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
+ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL
Sbjct 1 MATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA
Sbjct 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
Query 121 GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSRRLCAR 171
GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSRRLCAR
Sbjct 121 GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSRRLCAR 171
>gi|289574082|ref|ZP_06454309.1| alanine racemase domain-containing protein [Mycobacterium tuberculosis
K85]
gi|289538513|gb|EFD43091.1| alanine racemase domain-containing protein [Mycobacterium tuberculosis
K85]
Length=171
Score = 335 bits (860), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/171 (99%), Positives = 171/171 (100%), Gaps = 0/171 (0%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
+ATIG+VEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL
Sbjct 1 MATIGDVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA
Sbjct 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
Query 121 GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSRRLCAR 171
GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSRRLCAR
Sbjct 121 GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSRRLCAR 171
>gi|340626427|ref|YP_004744879.1| hypothetical protein MCAN_14291 [Mycobacterium canettii CIPT
140010059]
gi|340004617|emb|CCC43761.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=171
Score = 335 bits (859), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/171 (99%), Positives = 170/171 (99%), Gaps = 0/171 (0%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
+ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL
Sbjct 1 MATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA
Sbjct 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
Query 121 GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSRRLCAR 171
GEQERRALNDAANALVA GFPISCRSGGSTPTALLTAADGASETSRRLCAR
Sbjct 121 GEQERRALNDAANALVAAGFPISCRSGGSTPTALLTAADGASETSRRLCAR 171
>gi|119963284|ref|YP_946033.1| alanine racemase N-terminal domain-containing protein [Arthrobacter
aurescens TC1]
gi|119950143|gb|ABM09054.1| putative alanine racemase, N-terminal domain protein [Arthrobacter
aurescens TC1]
Length=366
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/163 (53%), Positives = 109/163 (67%), Gaps = 0/163 (0%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VATIGE EVF G D+FI +PLW+ A+RLR L + R+AVG +AE A+ G +L
Sbjct 64 VATIGEAEVFAADGVKDIFIAFPLWVEAPHAERLRALTAKCRLAVGVDSAESATAMGRQL 123
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
AG+++VLIE+DSGHHRSGV ++V++VA A AGL + GVFTFPGHSY PG P A
Sbjct 124 GVDAGSVEVLIEVDSGHHRSGVLPDEVVDVAEAAAAAGLSVQGVFTFPGHSYKPGMPTGA 183
Query 121 GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASE 163
E AL AA AL + GF ++ SGGSTPTAL+ A+E
Sbjct 184 ASNENEALGLAATALTSAGFEVTTISGGSTPTALIDGETVATE 226
>gi|119716914|ref|YP_923879.1| alanine racemase domain-containing protein [Nocardioides sp.
JS614]
gi|119537575|gb|ABL82192.1| alanine racemase domain protein [Nocardioides sp. JS614]
Length=360
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/163 (53%), Positives = 104/163 (64%), Gaps = 2/163 (1%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VATIGE EVFV+HGA+DVF+ YPLW+ A RLR LADRA +A+G +AEGA ARL
Sbjct 64 VATIGEAEVFVEHGAEDVFVAYPLWLTENGARRLRDLADRADLAIGVDSAEGA-RLAARL 122
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
+ +G + L+E+DSG HRSGV AE VA A EAGL + GVFTFPGHSY+P A
Sbjct 123 LEGSGVV-ALVEVDSGQHRSGVDAEDAGTVAAAAVEAGLPVRGVFTFPGHSYSPDALRSA 181
Query 121 GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASE 163
+ E R L A +L + G SGGSTP+ T D +E
Sbjct 182 ADDEARVLRAATESLRSFGLEPDVVSGGSTPSLAHTHTDELTE 224
>gi|326381918|ref|ZP_08203611.1| hypothetical protein SCNU_03202 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199344|gb|EGD56525.1| hypothetical protein SCNU_03202 [Gordonia neofelifaecis NRRL
B-59395]
Length=354
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/155 (55%), Positives = 102/155 (66%), Gaps = 7/155 (4%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VATIGE E+F + G DD+FI YPLW+ +A RLR LA R ++AVGA + G RL
Sbjct 58 VATIGEAEIFAELGVDDLFIAYPLWLSENKARRLRALAGRVQLAVGADSVAGVR----RL 113
Query 61 ADAAG--AIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKP- 117
ADA G VLIE+DSG HRSG+ A V+EVA A ++GL + GVFTFPGH Y PG
Sbjct 114 ADAIGDTTATVLIEVDSGMHRSGLPAGNVVEVATAARDSGLTVAGVFTFPGHGYGPGSAR 173
Query 118 GEAGEQERRALNDAANALVAVGFPISCRSGGSTPT 152
+A QE +AL AA AL A GF I+ SGGSTPT
Sbjct 174 SDAAAQEAQALGSAAEALRANGFDITVVSGGSTPT 208
>gi|169628346|ref|YP_001701995.1| hypothetical protein MAB_1253c [Mycobacterium abscessus ATCC
19977]
gi|169240313|emb|CAM61341.1| Conserved hypothetical protein (alanine racemase?) [Mycobacterium
abscessus]
Length=360
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/152 (52%), Positives = 97/152 (64%), Gaps = 2/152 (1%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VAT+GE EVF + G D+FI YPLW+ ++A RLRQ+A RA + V +A GA L
Sbjct 69 VATVGEAEVFAEAGFIDLFIAYPLWVTAQKARRLRQVASRAALRVAVDSAAGAQQLAEHL 128
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
D I V+IE+DSGHHR+GV +Q VA A AGL++VG+FTFPGH Y PG E
Sbjct 129 GDLP--ITVVIEVDSGHHRTGVAPDQAGPVAAAARSAGLNVVGIFTFPGHGYTPGHRAEV 186
Query 121 GEQERRALNDAANALVAVGFPISCRSGGSTPT 152
QE AL+ AA +L A G S RSGGSTPT
Sbjct 187 AAQESHALDTAAASLRAQGIDPSVRSGGSTPT 218
>gi|337763319|emb|CCB72027.1| Predicted amino acid aldolase or racemase [Streptomyces cattleya
NRRL 8057]
Length=365
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/170 (50%), Positives = 103/170 (61%), Gaps = 6/170 (3%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VATIGE EVF GADD+FI YPLW +A RLR LADR + + A +A GA G +
Sbjct 65 VATIGEAEVFAAAGADDLFIGYPLWADEGKARRLRALADRTALRLAADSAAGARRLGEAV 124
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
A + +L+EIDSGHHR+GVR +EVA A +AGL + GVFTFPGH Y G +A
Sbjct 125 RGADRPVQLLVEIDSGHHRTGVRPADAVEVARAAADAGLDVAGVFTFPGHGY--GHDAQA 182
Query 121 GEQ----ERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSR 166
E+ E RAL +AA AL + G + SGGSTPTA DG + R
Sbjct 183 RERAARDEERALGEAAEALRSAGLDVRVVSGGSTPTAGRWRPDGPVDELR 232
>gi|308178610|ref|YP_003918016.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117]
gi|307746073|emb|CBT77045.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117]
Length=366
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/167 (44%), Positives = 95/167 (57%), Gaps = 2/167 (1%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VAT+GE F HG +FI YPLW+ QA R+ +L RA++++G + E L
Sbjct 64 VATVGEALSFALHGVAKIFIAYPLWVDQAQATRILELMRRAKLSIGTDSVEAVEQMAKML 123
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
+ + ++IEIDSGHHRSGV + +E+A A G+ + GVFTFPGHSYAP A
Sbjct 124 GEKVSKVKLIIEIDSGHHRSGVSPQGAVEIAEAARAVGMRVHGVFTFPGHSYAPEGIDAA 183
Query 121 GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSRR 167
E +AL +AA L G I SGGSTPTA L+ D A T R
Sbjct 184 LNDEHKALAEAACLLRDAGHTIKRISGGSTPTAELS--DNAVLTEVR 228
>gi|302552096|ref|ZP_07304438.1| alanine racemase domain-containing protein [Streptomyces viridochromogenes
DSM 40736]
gi|302469714|gb|EFL32807.1| alanine racemase domain-containing protein [Streptomyces viridochromogenes
DSM 40736]
Length=364
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/157 (47%), Positives = 92/157 (59%), Gaps = 6/157 (3%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VATIGE E F G DD+FI YP+W+ +A RLR+LADR + VG + EGA G +
Sbjct 65 VATIGEAEAFARVGVDDLFIAYPVWLDADKAQRLRRLADRIALRVGVESIEGAQRLGNAV 124
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
+A ++VL+E+DSG R+GV+ EV A +AGL + GVFTFPGH Y G A
Sbjct 125 HGSARPVEVLVEVDSGSRRTGVQPHMAGEVGKAAADAGLLVAGVFTFPGHGY--GHDARA 182
Query 121 GEQ----ERRALNDAANALVAVGFPISCRSGGSTPTA 153
E E R L AA L +G + SGGSTPTA
Sbjct 183 REHAARDEERTLGQAAQVLRDLGLDVRVVSGGSTPTA 219
>gi|309812008|ref|ZP_07705774.1| alanine racemase, N-terminal domain protein [Dermacoccus sp.
Ellin185]
gi|308434066|gb|EFP57932.1| alanine racemase, N-terminal domain protein [Dermacoccus sp.
Ellin185]
Length=200
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/140 (48%), Positives = 85/140 (61%), Gaps = 2/140 (1%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VATIGE EVFVD G DDV I YPLW+ RLR LA+RARI VG + A L
Sbjct 58 VATIGEAEVFVDAGFDDVSIAYPLWVDDEAGRRLRALAERARIGVGCDSMTAARQLRKPL 117
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
A ++VL+E+DSG HR+G+ A E+A + G + GVFTFPGHSY+P ++
Sbjct 118 GSAV--VEVLVELDSGQHRTGIPARDAGELAAGIASLGFDVRGVFTFPGHSYSPEGRAQS 175
Query 121 GEQERRALNDAANALVAVGF 140
+ ER AL+ A+ AL A G
Sbjct 176 ADDERAALDGASRALRAKGI 195
>gi|262201693|ref|YP_003272901.1| alanine racemase domain-containing protein [Gordonia bronchialis
DSM 43247]
gi|262085040|gb|ACY21008.1| alanine racemase domain protein [Gordonia bronchialis DSM 43247]
Length=360
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/162 (47%), Positives = 93/162 (58%), Gaps = 7/162 (4%)
Query 1 VATIGEVEVF--VDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGA 58
VAT+GE EVF VD ++FI YPLW+ A RL +A + VG +AEGA +
Sbjct 61 VATVGEAEVFAAVDE-VREIFIAYPLWVTPAMAGRLISIARIVSLRVGIDSAEGARHLAD 119
Query 59 RL---ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPG 115
L D ++V++EIDSG HR+G EVA A +AGL +VGVFTFPGHSY PG
Sbjct 120 SLHEAGDGGAPLEVVVEIDSGQHRTGTSPRVAGEVARAAVDAGLDVVGVFTFPGHSYGPG 179
Query 116 KP-GEAGEQERRALNDAANALVAVGFPISCRSGGSTPTALLT 156
A +QE AL +AA L A G RSGGSTPT T
Sbjct 180 DTRARAADQEITALAEAAQGLRANGIEPRVRSGGSTPTVGFT 221
>gi|256824351|ref|YP_003148311.1| amino acid aldolase or racemase [Kytococcus sedentarius DSM 20547]
gi|256687744|gb|ACV05546.1| predicted amino acid aldolase or racemase [Kytococcus sedentarius
DSM 20547]
Length=371
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/163 (43%), Positives = 88/163 (54%), Gaps = 11/163 (6%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VAT+GE EVF D G D+ I YP+W +A R+ QLA R R+AVG + E + + L
Sbjct 65 VATLGEAEVFADAGCTDLLIAYPVWWDADRAGRVAQLAARVRLAVGVDSVEAVQHLASLL 124
Query 61 ADAAG-----------AIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPG 109
A G ++++E+D GHHRSG + VA A EAG + GVF FPG
Sbjct 125 GTAPGRPLAAPISPPTLPELVVEVDCGHHRSGCAPQDAGAVARAGLEAGFVVRGVFAFPG 184
Query 110 HSYAPGKPGEAGEQERRALNDAANALVAVGFPISCRSGGSTPT 152
HSY P E EQE R L AA++L G SGGSTPT
Sbjct 185 HSYTPTGREEVAEQEARDLAVAADSLRGAGILEPWVSGGSTPT 227
>gi|343928294|ref|ZP_08767747.1| hypothetical protein GOALK_112_00310 [Gordonia alkanivorans NBRC
16433]
gi|343761824|dbj|GAA14673.1| hypothetical protein GOALK_112_00310 [Gordonia alkanivorans NBRC
16433]
Length=361
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/152 (47%), Positives = 86/152 (57%), Gaps = 7/152 (4%)
Query 14 GADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLADAAGA--IDVLI 71
G D+FI YPLW QA RLR LA+R + +G + GA + LA A G + VL+
Sbjct 75 GCTDIFIAYPLWPTAGQAARLRALAERVTLRLGIDSLAGARH----LASAVGPARLQVLV 130
Query 72 EIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKP-GEAGEQERRALND 130
E+DSG HR+GV E V A GL ++GVFTFPGHSY G +A QE AL
Sbjct 131 EVDSGQHRTGVTPELAGSVGAAGVAEGLDVIGVFTFPGHSYGLGDTRRDAATQELAALAT 190
Query 131 AANALVAVGFPISCRSGGSTPTALLTAADGAS 162
AA+ L A G RSGGSTPT L A+ A+
Sbjct 191 AADGLRANGIEPRVRSGGSTPTVGLLDAEQAN 222
>gi|333919914|ref|YP_004493495.1| putative amino acid racemase [Amycolicicoccus subflavus DQS3-9A1]
gi|333482135|gb|AEF40695.1| Putative amino acid racemase [Amycolicicoccus subflavus DQS3-9A1]
Length=368
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/162 (36%), Positives = 84/162 (52%), Gaps = 1/162 (0%)
Query 3 TIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLAD 62
+GE EVF G DD+FI YP+W R+ R+R+LA+ R+ +G + D
Sbjct 73 NVGEAEVFAAAGFDDIFIAYPVWPTGRKGARIRRLAETTRLRLGVDNFAAIDAIADAMED 132
Query 63 AAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGH-SYAPGKPGEAG 121
AG + V++E+D G RSG + ++A + GL VGVFT+PGH S +P A
Sbjct 133 DAGRLQVVVEVDCGARRSGAPPDAAGDLATLARKRGLVPVGVFTYPGHGSASPDARKRAA 192
Query 122 EQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASE 163
+ AL A ++L A G + S GSTPT + + +E
Sbjct 193 HDQEAALTAAVHSLNAAGISTAVVSAGSTPTVEFSTSSVITE 234
>gi|19553808|ref|NP_601810.1| hypothetical protein NCgl2520 [Corynebacterium glutamicum ATCC
13032]
gi|62391448|ref|YP_226850.1| hypothetical protein cg2890 [Corynebacterium glutamicum ATCC
13032]
gi|41326789|emb|CAF21271.1| PUTATIVE AMINO ACID PROCESSING ENZYME [Corynebacterium glutamicum
ATCC 13032]
Length=343
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/159 (40%), Positives = 83/159 (53%), Gaps = 16/159 (10%)
Query 2 ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLA 61
ATIGE E+F G D+FI YPL++ RL + I++G + E A T
Sbjct 60 ATIGEAEIFAGAGFTDIFIAYPLYLTDHAVQRLNAIP--GEISIGVDSVEMAQATAGLRE 117
Query 62 DAAGAIDVLIEIDSGHHRSGVRA--EQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGE 119
D I LIE+DSGH RSGV A ++ ++ A+G GVFTFPGHSY PG +
Sbjct 118 D----IKALIEVDSGHRRSGVTATASELSQIREALGS---RYAGVFTFPGHSYGPGNGEQ 170
Query 120 AGEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAA 158
A E +ALN++ L SGGS+P+A T A
Sbjct 171 AAADELQALNNSVQRLAG-----GLTSGGSSPSAQFTDA 204
>gi|21325381|dbj|BAC00003.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length=380
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/159 (40%), Positives = 83/159 (53%), Gaps = 16/159 (10%)
Query 2 ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLA 61
ATIGE E+F G D+FI YPL++ RL + I++G + E A T
Sbjct 97 ATIGEAEIFAGAGFTDIFIAYPLYLTDHAVQRLNAIP--GEISIGVDSVEMAQATAGLRE 154
Query 62 DAAGAIDVLIEIDSGHHRSGVRA--EQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGE 119
D I LIE+DSGH RSGV A ++ ++ A+G GVFTFPGHSY PG +
Sbjct 155 D----IKALIEVDSGHRRSGVTATASELSQIREALGS---RYAGVFTFPGHSYGPGNGEQ 207
Query 120 AGEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAA 158
A E +ALN++ L SGGS+P+A T A
Sbjct 208 AAADELQALNNSVQRLAG-----GLTSGGSSPSAQFTDA 241
>gi|331694412|ref|YP_004330651.1| alanine racemase domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326949101|gb|AEA22798.1| alanine racemase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length=374
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/167 (48%), Positives = 93/167 (56%), Gaps = 4/167 (2%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VAT+ E E+F GA D+F+ YP+W + RLR LA R + VG + E A + G L
Sbjct 80 VATVSEAEIFCRAGATDLFVAYPVWAAGPRGARLRALAQRVDLRVGVDSPEAARHLG--L 137
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA 120
A A VL+EIDSG RSGV E+ EVA A AGL + GVFTFPGH YAPG A
Sbjct 138 ALAGTGASVLVEIDSGMRRSGVAPERAPEVARAADRAGLRVAGVFTFPGHGYAPGAAAGA 197
Query 121 GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSRR 167
E AL AA L GF + SGGSTPT L A+D T R
Sbjct 198 AADESAALAKAAELLRGNGFDVLEVSGGSTPT--LAASDPTVLTEVR 242
>gi|344046326|gb|EGV41992.1| hypothetical protein CgS9114_01205 [Corynebacterium glutamicum
S9114]
Length=343
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/130 (43%), Positives = 70/130 (54%), Gaps = 7/130 (5%)
Query 2 ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLA 61
ATIGE E+F G D+FI YPL++ RL + I++G + E A T
Sbjct 60 ATIGEAEIFAGAGFTDIFIAYPLYLTDHAVQRLNAIP--GAISIGVDSVEMAQATAGLRE 117
Query 62 DAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEAG 121
D I LIE+DSGH RSGV A LE++ G GVFTFPGHSY PG +A
Sbjct 118 D----IKALIEVDSGHRRSGVTA-TALELSEIRQALGSRYTGVFTFPGHSYGPGNGEQAA 172
Query 122 EQERRALNDA 131
E +ALN++
Sbjct 173 ADELQALNNS 182
>gi|145296605|ref|YP_001139426.1| hypothetical protein cgR_2513 [Corynebacterium glutamicum R]
gi|140846525|dbj|BAF55524.1| hypothetical protein [Corynebacterium glutamicum R]
Length=380
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/130 (42%), Positives = 70/130 (54%), Gaps = 7/130 (5%)
Query 2 ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLA 61
AT+GE E+F G D+FI YPL++ RL + I++G + E A T
Sbjct 97 ATVGEAEIFAGAGFTDIFIAYPLYLTDHAVQRLNAIP--GAISIGVDSVEMAQATAGLRE 154
Query 62 DAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEAG 121
D I LIE+DSGH RSGV A LE++ G GVFTFPGHSY PG +A
Sbjct 155 D----IKALIEVDSGHRRSGVTA-TALELSEIRQALGSRYTGVFTFPGHSYGPGNGEQAA 209
Query 122 EQERRALNDA 131
E +ALN++
Sbjct 210 ADELQALNNS 219
>gi|302387296|ref|YP_003823118.1| alanine racemase domain protein [Clostridium saccharolyticum
WM1]
gi|302197924|gb|ADL05495.1| alanine racemase domain protein [Clostridium saccharolyticum
WM1]
Length=373
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/165 (37%), Positives = 87/165 (53%), Gaps = 8/165 (4%)
Query 2 ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRAR-IAVGAGTAEGASNTGARL 60
A + E EV D G +D+FI YP+ IG + R LA+R R + + + EGA
Sbjct 68 AKVSEAEVMADGGMEDIFIAYPM-IGRFRIRRAMDLAERIRRLILAIDSLEGAKALDQAA 126
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAG-LHLVGVFTFPGHSYAPGKPGE 119
+D ++V +EID+G R+GV E+ +E+A AV E L+L G+FTF + GKP E
Sbjct 127 SDRDVVLEVRMEIDTGAGRTGVPMERAVELALAVKEMKHLNLTGIFTFKSLILS-GKPTE 185
Query 120 ----AGEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADG 160
A ++E + + A L G I S GS+PT LL A G
Sbjct 186 DNLLAAQEEGNMMAETARMLKEAGVEIQDISAGSSPTGLLVAQTG 230
>gi|290962430|ref|YP_003493612.1| amino acid racemase [Streptomyces scabiei 87.22]
gi|260651956|emb|CBG75086.1| putative amino acid racemase [Streptomyces scabiei 87.22]
Length=368
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/151 (36%), Positives = 74/151 (50%), Gaps = 1/151 (0%)
Query 3 TIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLAD 62
+GE EVF G DD+F+ YP+W + R+R+L + AR+ VG + +
Sbjct 73 NVGEAEVFAAAGFDDIFLAYPIWAAGTKGPRIRRLTESARLRVGVDNVAAIEALADAMGE 132
Query 63 AAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEAGLHLVGVFTFPGH-SYAPGKPGEAG 121
+ V+IE+D G RSG E ++A A + GL VGVFT+PGH A
Sbjct 133 EPDRLQVVIEVDCGARRSGAPPEAAGDLALAARKRGLMPVGVFTYPGHGGADRDARRRAA 192
Query 122 EQERRALNDAANALVAVGFPISCRSGGSTPT 152
+ + AL A +L VG S GSTPT
Sbjct 193 QDQEAALTAAVRSLEGVGVTAEVVSAGSTPT 223
>gi|338813121|ref|ZP_08625257.1| alanine racemase domain protein [Acetonema longum DSM 6540]
gi|337274843|gb|EGO63344.1| alanine racemase domain protein [Acetonema longum DSM 6540]
Length=374
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/168 (33%), Positives = 81/168 (49%), Gaps = 5/168 (2%)
Query 3 TIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLAD 62
T+ E E V+HG ++ + YP+ R+ LA +A + + E A RLA
Sbjct 65 TLDEAEQLVEHGFQEIVLAYPVA-AAENITRVIGLAKKAHVMISFDGFEAALQMQNRLAA 123
Query 63 AAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGE-AGLHLVGVFTFPGHSY---APGKPG 118
+D L+ ID G R GVR E+VLE+A A+ + + L+ G+ T PGH Y +
Sbjct 124 EKLRMDYLVIIDCGLRRFGVRPEKVLELARALSKLSALNFKGIATHPGHVYGVSCLSEIA 183
Query 119 EAGEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSR 166
+ ++E AL A N L GF + + GSTPT A + T R
Sbjct 184 KVAQEEISALETAKNLLSQAGFAVEIVATGSTPTLPFAAQNNTVTTLR 231
>gi|345017193|ref|YP_004819546.1| alanine racemase domain-containing protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344032536|gb|AEM78262.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
Rt8.B1]
Length=373
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/157 (35%), Positives = 77/157 (50%), Gaps = 5/157 (3%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
V TI E E ++G ++ I YP+ +R+ LA +A + + E A+
Sbjct 63 VGTIDEAEKLTENGFKEIMIAYPVA-SKENIERILTLAQKAHVILSFDGVEAAAKVEETC 121
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGE-AGLHLVGVFTFPGHSYAPGKPGE 119
++D LI IDSG HR GV E+VLE+A + L G+ T PGH+YA E
Sbjct 122 NRIGLSMDYLIIIDSGLHRFGVVPEKVLELAEKLKSFTHLKFKGIATHPGHTYAKRNIEE 181
Query 120 ---AGEQERRALNDAANALVAVGFPISCRSGGSTPTA 153
++E AL AAN L G+ + + GSTPTA
Sbjct 182 IKAVAQEEVEALTTAANILKKEGYSVDIVATGSTPTA 218
>gi|333997957|ref|YP_004530569.1| alanine racemase domain-containing protein [Treponema primitia
ZAS-2]
gi|333740387|gb|AEF85877.1| alanine racemase domain protein [Treponema primitia ZAS-2]
Length=371
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/156 (36%), Positives = 82/156 (53%), Gaps = 6/156 (3%)
Query 2 ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADR-ARIAVGAGTAEGASNTGARL 60
A + E EV D G D+FI YPL +G + R LA R R+ + + +GA
Sbjct 66 AKVSEAEVMADGGLQDIFIAYPL-VGDFRIQRALILARRITRLILAVDSLQGALALSQAA 124
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEA-GLHLVGVFTFPGHSY--APGKP 117
A ++V +EID+G R+G+ E+ +A AV + GL L G++TF G +Y P +
Sbjct 125 VKAGQELEVRLEIDTGAKRTGIPLEEASLLAEAVYKMPGLRLTGIYTFKGLNYQGTPTEE 184
Query 118 GEAGEQERRALND-AANALVAVGFPISCRSGGSTPT 152
E QE +L + AA + A+G + SGGS+PT
Sbjct 185 NELAAQEESSLMERAAKKIEALGIKLPDISGGSSPT 220
>gi|298242855|ref|ZP_06966662.1| alanine racemase domain protein [Ktedonobacter racemifer DSM
44963]
gi|297555909|gb|EFH89773.1| alanine racemase domain protein [Ktedonobacter racemifer DSM
44963]
Length=370
Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/156 (37%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
Query 2 ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLA 61
A +GE EVF + G +D+F+ YP+ IG +A R +LA R+ VG + +G +
Sbjct 68 AKLGEAEVFAEAGIEDIFVAYPI-IGPEKALRAARLAQHCRLIVGVESEKGVQQLSEAAS 126
Query 62 DAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGEA-GLHLVGVFTFPGHSYAPGK---P 117
+ V +EIDSG R+GV E ++ V +A GL L G+FTF G S+ P
Sbjct 127 QIGSTLLVRVEIDSGLGRTGVGQEAAGKLCRQVLDAPGLSLDGIFTFRGASFPEASSRDP 186
Query 118 GEAGEQERRALNDAANALVAVGFPISCRSGGSTPTA 153
G E + A L G PI S GSTPTA
Sbjct 187 QILGRLEGEMMVAIAERLRRAGIPIQEISVGSTPTA 222
>gi|302390371|ref|YP_003826192.1| alanine racemase domain protein [Thermosediminibacter oceani
DSM 16646]
gi|302200999|gb|ADL08569.1| alanine racemase domain protein [Thermosediminibacter oceani
DSM 16646]
Length=372
Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/156 (36%), Positives = 76/156 (49%), Gaps = 5/156 (3%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
V T+ E E V+ G +D+ + YP+ G + R+ +LA +ARI + E A + L
Sbjct 62 VGTLLEAERLVEKGFNDIMLAYPVA-GRQNLKRVIRLAQKARIILSIDCVEVAREINSAL 120
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGE-AGLHLVGVFTFPGHSY---APGK 116
+ ++ LI IDSG R GV E +A + L LVG+ T PGH Y P K
Sbjct 121 EENGVELEYLIIIDSGLRRFGVLPEDAAGLARELAALKTLKLVGIATHPGHVYGASGPEK 180
Query 117 PGEAGEQERRALNDAANALVAVGFPISCRSGGSTPT 152
E QE AL AA L GF + + GSTPT
Sbjct 181 VDEIARQEVDALRTAAGILEKEGFKVEIVATGSTPT 216
>gi|266619447|ref|ZP_06112382.1| alanine racemase domain protein [Clostridium hathewayi DSM 13479]
gi|288869010|gb|EFD01309.1| alanine racemase domain protein [Clostridium hathewayi DSM 13479]
Length=371
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/171 (34%), Positives = 86/171 (51%), Gaps = 8/171 (4%)
Query 2 ATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADR-ARIAVGAGTAEGASNTGARL 60
A + E EV D GADD+FI YP+ +G + R LA R R+ + + E A
Sbjct 66 AKVSEAEVMADGGADDIFIAYPM-VGGFRIKRAVALARRLKRLILAVDSMECAVPLNEAA 124
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGE-AGLHLVGVFTFPGHSYAPGKPGE 119
A ++V +E+D+G R+GV+ + E+A V + + L+L G++TF Y KP E
Sbjct 125 KAAGITLEVRLEVDTGAKRTGVQRTKAAELAKEVHQLSNLNLTGIYTFKSLVYH-DKPTE 183
Query 120 ----AGEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSR 166
AG +E + A+ + G PI+ S GSTPT + A G + R
Sbjct 184 DKVIAGAEEGDMMEAIADEIRKAGVPIAEISAGSTPTGVEVAKTGKVDEIR 234
>gi|337278875|ref|YP_004618346.1| hypothetical protein Rta_12420 [Ramlibacter tataouinensis TTB310]
gi|334729951|gb|AEG92327.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length=378
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/162 (37%), Positives = 83/162 (52%), Gaps = 10/162 (6%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADR-ARIAVGAGTAEGASNTGAR 59
V+T+ E + F HG D+ Y + I + D + L R R+++ + E A R
Sbjct 64 VSTLLEADYFAGHGVRDIL--YAVCIAPNKMDHVLALQARGVRMSIILDSVEAARLVAQR 121
Query 60 LADAAGAIDVLIEIDSGHHRSGVRAE--QVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKP 117
LA A I VLIEID+ HRSGV+ E ++L++A + G+ + GV T G SY +
Sbjct 122 LAHAPAGIGVLIEIDADGHRSGVKPESPELLDIARTLEAGGVAVRGVMTHAGSSY-DCRS 180
Query 118 GEA----GEQERRALNDAANALVAVGFPISCRSGGSTPTALL 155
+A EQERRA+ AA L A G S G+TPT L
Sbjct 181 AQALRAMAEQERRAVVLAAGRLRAAGMACPVVSVGATPTGLF 222
>gi|254976416|ref|ZP_05272888.1| putative amino acid racemase [Clostridium difficile QCD-66c26]
gi|255093801|ref|ZP_05323279.1| putative amino acid racemase [Clostridium difficile CIP 107932]
gi|255315553|ref|ZP_05357136.1| putative amino acid racemase [Clostridium difficile QCD-76w55]
7 more sequence titles
Length=370
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/168 (29%), Positives = 79/168 (48%), Gaps = 8/168 (4%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
V T+ E E + G +D+ + YP ++G +R+ +A + + E A
Sbjct 62 VGTLDEGEALIKAGFEDIMLAYP-YMGEVNINRIVTMASKINLICATDNIECAKAYSEAF 120
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGE-AGLHLVGVFTFPGHSYAPGKPG- 118
+ + +LI +D G HR GV E+V+E+A + + + +VG+ + PG Y P
Sbjct 121 SKSKIECKLLIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPEG 180
Query 119 --EAGEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASET 164
+ QE ++ A AL GF I + GSTPT A+ AS+T
Sbjct 181 VPDVCVQEDSSMEKAYKALTDNGFNIEIVASGSTPTV---EAEAASKT 225
>gi|255656805|ref|ZP_05402214.1| putative amino acid racemase [Clostridium difficile QCD-23m63]
gi|296452364|ref|ZP_06894066.1| serine racemase [Clostridium difficile NAP08]
gi|296877713|ref|ZP_06901741.1| serine racemase [Clostridium difficile NAP07]
gi|296258793|gb|EFH05686.1| serine racemase [Clostridium difficile NAP08]
gi|296431335|gb|EFH17154.1| serine racemase [Clostridium difficile NAP07]
Length=370
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/157 (29%), Positives = 73/157 (47%), Gaps = 5/157 (3%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
V T+ E E + G +D+ + YP ++G +R+ +A + + E A
Sbjct 62 VGTLDEGEALIKAGFEDIMLAYP-YMGEVNINRIVTMASKINLICATDNIECAKAYSEAF 120
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGE-AGLHLVGVFTFPGHSYAPGKPG- 118
+ + +LI +D G HR GV E+V+E+A + + + +VG+ + PG Y P
Sbjct 121 SKSKLECKLLIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPEG 180
Query 119 --EAGEQERRALNDAANALVAVGFPISCRSGGSTPTA 153
+ QE ++ A AL GF I + GSTPT
Sbjct 181 VPDVCVQEDSSMEKAYKALTDNGFNIEIVASGSTPTV 217
>gi|126700435|ref|YP_001089332.1| amino acid racemase [Clostridium difficile 630]
gi|115251872|emb|CAJ69707.1| putative amino acid racemase [Clostridium difficile]
Length=370
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/157 (29%), Positives = 73/157 (47%), Gaps = 5/157 (3%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
V T+ E E + G +D+ + YP ++G +R+ +A + + E A
Sbjct 62 VGTLDEGEALIKAGFEDIMLAYP-YMGEVNINRIVTMASKINLICATDNIECAKAYSEAF 120
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGE-AGLHLVGVFTFPGHSYAPGKPG- 118
+ + +LI +D G HR GV E+V+E+A + + + +VG+ + PG Y P
Sbjct 121 SKSKIECKLLIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPEG 180
Query 119 --EAGEQERRALNDAANALVAVGFPISCRSGGSTPTA 153
+ QE ++ A AL GF I + GSTPT
Sbjct 181 VPDVCVQEDSSMEKAYKALTDNGFNIEIVASGSTPTV 217
>gi|255101991|ref|ZP_05330968.1| putative amino acid racemase [Clostridium difficile QCD-63q42]
gi|255307859|ref|ZP_05352030.1| putative amino acid racemase [Clostridium difficile ATCC 43255]
Length=370
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/166 (28%), Positives = 78/166 (47%), Gaps = 8/166 (4%)
Query 3 TIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLAD 62
T+ E E + G +D+ + YP ++G +R+ +A + + E A +
Sbjct 64 TLDEGEALIKAGFEDIMLAYP-YMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSK 122
Query 63 AAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGE-AGLHLVGVFTFPGHSYAPGKPG--- 118
+ +LI +D G HR GV E+V+E+A + + + +VG+ + PG Y P
Sbjct 123 SKIECKLLIIVDCGLHRFGVEPEKVVELATEISKLENIKIVGISSHPGQVYGCSSPEGVP 182
Query 119 EAGEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASET 164
+ QE ++ A AL GF I + GSTPT ++ AS+T
Sbjct 183 DVCVQEDSSMEKAYKALTDNGFNIEIVASGSTPTV---ESEAASKT 225
>gi|337751166|ref|YP_004645328.1| putative amino acid aldolase or racemase [Paenibacillus mucilaginosus
KNP414]
gi|336302355|gb|AEI45458.1| predicted amino acid aldolase or racemase [Paenibacillus mucilaginosus
KNP414]
Length=388
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/168 (36%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
VA + E EV HG +FI YPL + + R L ++A + + + EGA RL
Sbjct 79 VAKVSEAEVMAAHGIRSIFIAYPL-VTPGKIRRALALHEQAELILAVDSLEGA----VRL 133
Query 61 ADAA-----GAIDVLIEIDSGHHRSGVRAEQVLEVAHAVG-EAGLHLVGVFTFPGHSYAP 114
++AA + V +EID+G R+GV + +A + GL L G++TF G +
Sbjct 134 SEAAVTHGGAPLAVRLEIDTGLRRTGVPYDDAPALAEKIAAMPGLSLTGIYTFRG-ALLD 192
Query 115 GKP----GEAGEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAA 158
G P AG+QE R + D A L G P++ S GSTPTA AA
Sbjct 193 GAPTLDLAAAGKQEGRLMADLAQRLREAGVPVADVSVGSTPTAAFAAA 240
>gi|319792881|ref|YP_004154521.1| alanine racemase domain-containing protein [Variovorax paradoxus
EPS]
gi|315595344|gb|ADU36410.1| alanine racemase domain protein [Variovorax paradoxus EPS]
Length=379
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/105 (47%), Positives = 58/105 (56%), Gaps = 8/105 (7%)
Query 66 AIDVLIEIDSGHHRSGVRAEQ--VLEVAHAVGEAGLHLVGVFTFPGHSYAPGKPGEA--- 120
A DVLIE+D+ HRSG+R + +LEVAH + G+HL GV T G SY P EA
Sbjct 129 AFDVLIEVDTDGHRSGIRPDDDVLLEVAHVLHGGGMHLAGVMTHAGSSYDLDTP-EALRA 187
Query 121 -GEQERRALNDAANALVAVGFPISCRSGGSTPTALLTA-ADGASE 163
EQER AA L G P S GSTPTAL+ DG +E
Sbjct 188 MAEQERAGCVRAAQRLRDAGLPCPIVSVGSTPTALMAERLDGVTE 232
>gi|269837390|ref|YP_003319618.1| alanine racemase domain-containing protein [Sphaerobacter thermophilus
DSM 20745]
gi|269786653|gb|ACZ38796.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
20745]
Length=366
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/161 (35%), Positives = 79/161 (50%), Gaps = 7/161 (4%)
Query 2 ATIGEVEVFVDHGA-DDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
A +GE E D G DDV + Y + +G ++ RL L DR ++ V EGA+ A
Sbjct 64 AKLGEAEALADAGVLDDVLLAYQI-VGEQKIRRLLALMDRIKVTVAVDGVEGAAALSAAC 122
Query 61 ADAAGAIDVLIEIDSGHHRSGVRA-EQVLEVAHAVGEA-GLHLVGVFTFPGHSYAPGKPG 118
DA +DV +EI++G R+GV E L +A V + GL L G+ T GH
Sbjct 123 RDAGKTLDVRLEINTGLDRAGVLPGEPALALAREVMQMPGLRLAGIMTHEGHVAKATNAD 182
Query 119 EAGEQER---RALNDAANALVAVGFPISCRSGGSTPTALLT 156
E E +A+ + A+ L + G P+ S GSTP + T
Sbjct 183 ELAEIATAAGKAMVETADLLRSNGIPVDVVSVGSTPASWYT 223
>gi|119715651|ref|YP_922616.1| alanine racemase domain-containing protein [Nocardioides sp.
JS614]
gi|119536312|gb|ABL80929.1| alanine racemase domain protein [Nocardioides sp. JS614]
Length=386
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/168 (36%), Positives = 80/168 (48%), Gaps = 6/168 (3%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARL 60
+AT GE EV HG D+ + YP+ +G + DRL + + + + A + E AS
Sbjct 87 LATAGEAEVMWRHGVADLLLAYPV-LGRAKLDRLAPIVEAGSLTMVADSVEVASGYSDLA 145
Query 61 ADAAGAIDVLIEIDSGHHRSGVRAEQVLEVAHAVGE-AGLHLVGVFTFPGHSYAPGKP-- 117
I VLIEIDSG R+GV EQ VA V GL + G+ T GHS+A
Sbjct 146 CRTGREIAVLIEIDSGMRRAGVPPEQAGAVAVEVDRLPGLRVRGILTHAGHSHAALDQRG 205
Query 118 -GEAGEQERRALNDAANALVAVGFPISCRSGGST-PTALLTAADGASE 163
E E RA+ A + G + S GST T L++ DG +E
Sbjct 206 IEEVARDEVRAMQQARETVERAGVTVEVVSAGSTITTPYLSSDDGITE 253
>gi|89899781|ref|YP_522252.1| alanine racemase-like protein [Rhodoferax ferrireducens T118]
gi|89344518|gb|ABD68721.1| alanine racemase-like [Rhodoferax ferrireducens T118]
Length=379
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/161 (36%), Positives = 76/161 (48%), Gaps = 8/161 (4%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADR-ARIAVGAGTAEGASNTGAR 59
V+T+ E E F HG D+ Y + I + D + L D+ R+++ + E R
Sbjct 65 VSTLLEAEYFAAHGVKDIL--YAVCIAPNKLDHVMALQDKGVRLSLLLDSMETTRLLAER 122
Query 60 LADAAGAIDVLIEIDSGHHRSGVR--AEQVLEVAHAVGEAGLHLVGVFTFPGHSYAPGKP 117
DVLIEIDS HRSGV A +++E+ + AG+ + GV T G SY
Sbjct 123 ARATRRHFDVLIEIDSDGHRSGVTPDASELVEIGLFLESAGIPVKGVLTHAGSSYDCASI 182
Query 118 GE---AGEQERRALNDAANALVAVGFPISCRSGGSTPTALL 155
EQER A+ AA L A G S GSTPTAL
Sbjct 183 EAIRAMAEQERAAVVLAAQRLRAAGIACPVVSMGSTPTALF 223
>gi|239834177|ref|ZP_04682505.1| alanine racemase domain-containing protein [Ochrobactrum intermedium
LMG 3301]
gi|239822240|gb|EEQ93809.1| alanine racemase domain-containing protein [Ochrobactrum intermedium
LMG 3301]
Length=354
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/165 (33%), Positives = 76/165 (47%), Gaps = 11/165 (6%)
Query 4 IGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLADA 63
+GE EV D G D+F+ Y + +G + DRL L R ++V + + AR AD
Sbjct 69 LGEAEVMADAGLTDIFLPYNI-LGREKLDRLHALHQRVTLSVTVDNSTSLAGLAARFADE 127
Query 64 AGAIDVLIEIDSGHHRSGVRAE-QVLEVAHAVGE-AGLHLVGVFTFPGHSYAPGKPGEAG 121
+ VL+E D+G R GV+ + LE+A + + AGL G+ T+P A GKP
Sbjct 128 KHPLKVLVECDTGMGRCGVQTPAEALELARIIDQSAGLGFGGLMTYP----AAGKP---- 179
Query 122 EQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSR 166
+Q + L A L A G S G TP +D R
Sbjct 180 DQAEQWLYSARELLDANGLSCETISSGGTPDMWRKPSDSVVTEYR 224
>gi|289678897|ref|ZP_06499787.1| alanine racemase, N-terminal [Pseudomonas syringae pv. syringae
FF5]
Length=337
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/160 (38%), Positives = 75/160 (47%), Gaps = 8/160 (5%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGT-RQADRLRQLADRARIAVGAGTAEGASNTGAR 59
V+T+ E E G DDVF + G QA RLR+ R I + TA A +
Sbjct 67 VSTLKEAEHCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVTAARAIVAFGQ 126
Query 60 LADAAGAIDVLIEIDSGHHRSGVRAE--QVLEVAHAVGEAGLHLVGVFTFPGHSY---AP 114
D DV IEID HRSG+ + ++EVA + + G+ L GV T G SY P
Sbjct 127 AHDER--FDVWIEIDCDGHRSGLTVDDPSLVEVASTLVDGGMQLRGVMTHAGSSYDLDTP 184
Query 115 GKPGEAGEQERRALNDAANALVAVGFPISCRSGGSTPTAL 154
EQERR AA + G P + S GSTPTAL
Sbjct 185 AALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTAL 224
>gi|153011211|ref|YP_001372425.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151563099|gb|ABS16596.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
Length=354
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/165 (32%), Positives = 74/165 (45%), Gaps = 11/165 (6%)
Query 4 IGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADRARIAVGAGTAEGASNTGARLADA 63
+GE EV D G ++F+ Y + +G + DRL L R ++V + AR D
Sbjct 69 LGEAEVMADAGLTNIFLPYNI-LGQEKLDRLHTLHQRITLSVTVDNRTSLAGLAARFTDE 127
Query 64 AGAIDVLIEIDSGHHRSGVRAE-QVLEVAHAVGE-AGLHLVGVFTFPGHSYAPGKPGEAG 121
+ VL+E D+G R GV+ + LE+A + + AGL G+ T+P A GKP EA
Sbjct 128 KHPLKVLVECDTGMGRCGVQTPAEALELARIIDQSAGLRFGGLMTYP----AAGKPDEA- 182
Query 122 EQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADGASETSR 166
+ L A L A P S G TP +D R
Sbjct 183 ---EQWLYSARELLEANSLPCETISSGGTPDMWRKPSDSVVTEYR 224
>gi|330899492|gb|EGH30911.1| alanine racemase [Pseudomonas syringae pv. japonica str. M301072PT]
gi|330940623|gb|EGH43657.1| alanine racemase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330976056|gb|EGH76122.1| alanine racemase [Pseudomonas syringae pv. aptata str. DSM 50252]
Length=378
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/160 (38%), Positives = 75/160 (47%), Gaps = 8/160 (5%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGT-RQADRLRQLADRARIAVGAGTAEGASNTGAR 59
V+T+ E E G DDVF + G QA RLR+ R I + TA A +
Sbjct 64 VSTLKEAEHCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVTAARAIVAFGQ 123
Query 60 LADAAGAIDVLIEIDSGHHRSGVRAE--QVLEVAHAVGEAGLHLVGVFTFPGHSY---AP 114
D DV IEID HRSG+ + ++EVA + + G+ L GV T G SY P
Sbjct 124 AHDER--FDVWIEIDCDGHRSGLTVDDPSLVEVASTLVDGGMQLRGVMTHAGSSYDLDTP 181
Query 115 GKPGEAGEQERRALNDAANALVAVGFPISCRSGGSTPTAL 154
EQERR AA + G P + S GSTPTAL
Sbjct 182 AALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTAL 221
>gi|298244439|ref|ZP_06968245.1| alanine racemase domain protein [Ktedonobacter racemifer DSM
44963]
gi|297551920|gb|EFH85785.1| alanine racemase domain protein [Ktedonobacter racemifer DSM
44963]
Length=370
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/166 (35%), Positives = 80/166 (49%), Gaps = 7/166 (4%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADR-ARIAVGAGTAEGASNTGAR 59
VA + E EV G DD+ IT + +G + RL L RI V + GA
Sbjct 69 VAKVSEAEVMAQEGIDDLLITTEI-VGKPKLSRLVTLIQHHPRIKVVIDSFIGAQELNTA 127
Query 60 LADAAGAIDVLIEIDSGHHRSGVRA-EQVLEVAHAVGE-AGLHLVGVFTFPGHS---YAP 114
L +A IDVLI+++ G +R GV ++ L +AH + LHLVGV + GH ++P
Sbjct 128 LHEAQLEIDVLIDLNVGQNRCGVLPGKEALTLAHYCSKLPHLHLVGVQGYEGHLQHIHSP 187
Query 115 GKPGEAGEQERRALNDAANALVAVGFPISCRSGGSTPTALLTAADG 160
+ + Q R L + A L GFPI + G T TA + A G
Sbjct 188 EERTQRCHQAMRLLTETAAQLRFEGFPIEVVTTGGTGTAEICADYG 233
>gi|66046627|ref|YP_236468.1| alanine racemase, N-terminal [Pseudomonas syringae pv. syringae
B728a]
gi|63257334|gb|AAY38430.1| Alanine racemase, N-terminal [Pseudomonas syringae pv. syringae
B728a]
Length=378
Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/160 (38%), Positives = 73/160 (46%), Gaps = 8/160 (5%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGT-RQADRLRQLADRARIAVGAGTAEGASNTGAR 59
V+T+ E E G DDVF + G QA RLR+ R I + A A +
Sbjct 64 VSTLKEAEHCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAVFGQ 123
Query 60 LADAAGAIDVLIEIDSGHHRSGVRAE--QVLEVAHAVGEAGLHLVGVFTFPGHSY---AP 114
D DV IEID HRSG+ E ++EVA + G+ L GV T G SY P
Sbjct 124 AHDER--FDVWIEIDCDGHRSGLTVEDPSLVEVASTLVNGGMQLRGVMTHAGSSYDLDTP 181
Query 115 GKPGEAGEQERRALNDAANALVAVGFPISCRSGGSTPTAL 154
EQERR AA + G P + S GSTPTAL
Sbjct 182 AALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTAL 221
>gi|332285912|ref|YP_004417823.1| alanine racemase-like protein [Pusillimonas sp. T7-7]
gi|330429865|gb|AEC21199.1| alanine racemase-like protein [Pusillimonas sp. T7-7]
Length=388
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/163 (37%), Positives = 77/163 (48%), Gaps = 12/163 (7%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQ-ADRLRQLADRARIAVGAGTAEGASNTGAR 59
V+T+ E E F++HG D+ Y + I + A +R + AR+ V E A
Sbjct 71 VSTLKEAEYFLEHGWHDIL--YAVGIAKNKFAHVVRLMQKGARLTVVLDNTESARALAQF 128
Query 60 LADAAGAIDVLIEIDSGHHRSGV--RAEQVLEVAHAVG----EAGLHLVGVFTFPGHSYA 113
+ I VLIEID+ HRSGV A +LE+A +G E G L GV T G SYA
Sbjct 129 CREQTLTIPVLIEIDTDGHRSGVPPEASLLLEIADLLGRSEAEGGAWLAGVMTHAGASYA 188
Query 114 PGKPGE---AGEQERRALNDAANALVAVGFPISCRSGGSTPTA 153
+ EQER AA L + GF S GSTPTA
Sbjct 189 CTSADQIEAMAEQERAGAVHAAQRLRSAGFAAPVVSVGSTPTA 231
>gi|330972501|gb|EGH72567.1| alanine racemase [Pseudomonas syringae pv. aceris str. M302273PT]
Length=378
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/160 (38%), Positives = 72/160 (45%), Gaps = 8/160 (5%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGT-RQADRLRQLADRARIAVGAGTAEGASNTGAR 59
V+T+ E E G DDVF + G QA RLR+ R I + A A +
Sbjct 64 VSTLKEAEHCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAVFGQ 123
Query 60 LADAAGAIDVLIEIDSGHHRSGVRAE--QVLEVAHAVGEAGLHLVGVFTFPGHSY---AP 114
D DV IEID HRSG+ E ++EVA + G+ L GV T G SY P
Sbjct 124 AHDER--FDVWIEIDCDGHRSGLTVEDPSLVEVASTLVNGGMQLRGVMTHAGSSYDLDTP 181
Query 115 GKPGEAGEQERRALNDAANALVAVGFPISCRSGGSTPTAL 154
EQERR AA + G P S GSTPTAL
Sbjct 182 AALQALAEQERRLCVSAAERIRQAGLPCEDVSIGSTPTAL 221
>gi|302188653|ref|ZP_07265326.1| alanine racemase, N-terminal [Pseudomonas syringae pv. syringae
642]
Length=378
Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/160 (37%), Positives = 74/160 (47%), Gaps = 8/160 (5%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGT-RQADRLRQLADRARIAVGAGTAEGASNTGAR 59
V+T+ E E G DDVF + G QA RLR+ R I + A A +
Sbjct 64 VSTLKEAEHCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIVVFGQ 123
Query 60 LADAAGAIDVLIEIDSGHHRSGVRAE--QVLEVAHAVGEAGLHLVGVFTFPGHSY---AP 114
D DV IEID HRSG+ + ++EVA + + G+ L GV T G SY P
Sbjct 124 AHDER--FDVWIEIDCDGHRSGLTVDDPSLIEVARTLVDGGMQLRGVMTHAGSSYDLDTP 181
Query 115 GKPGEAGEQERRALNDAANALVAVGFPISCRSGGSTPTAL 154
EQERR AA + G P + S GSTPTAL
Sbjct 182 AALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTAL 221
>gi|345048631|gb|EGW52457.1| hypothetical protein HMPREF1022_00584 [Desulfovibrio sp. 6_1_46AFAA]
Length=374
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/164 (35%), Positives = 76/164 (47%), Gaps = 14/164 (8%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADR---ARIAVGAGTAEGASNTG 57
V+T+ E E F +HG D+ +G R LA R R+++ +AE A
Sbjct 62 VSTLAEAEYFAEHGVTDICYA----VGVTPGKLARALALRQRGVRLSLLLDSAESARQLA 117
Query 58 ARLADAAGAIDVLIEIDSGHHRSGVRAE--QVLEVAHAVGEAGLHLVGVFTFPGHSYAPG 115
A + D+L+EID HRSG+R + ++ E A + AG +L+GV T G +Y
Sbjct 118 AFARERKHIFDLLLEIDCDGHRSGLRPDDPELTETAALLAGAGQNLLGVLTHAGSAYDLP 177
Query 116 KPGE-----AGEQERRALNDAANALVAVGFPISCRSGGSTPTAL 154
PG EQER A AA L G S GSTPTA
Sbjct 178 NPGPEVFAALAEQERDAAVRAAQRLREAGHACPVVSVGSTPTAF 221
>gi|330986553|gb|EGH84656.1| alanine racemase domain-containing protein [Pseudomonas syringae
pv. lachrymans str. M301315]
Length=378
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/160 (37%), Positives = 75/160 (47%), Gaps = 8/160 (5%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGT-RQADRLRQLADRARIAVGAGTAEGASNTGAR 59
V+T+ E E G +DVF + G QA +LR+ R I + A A +
Sbjct 64 VSTLKEAEHCFAEGINDVFYAVAIAPGKLDQALKLRRNGCRLSILTDSVVAAQAIVAFGQ 123
Query 60 LADAAGAIDVLIEIDSGHHRSGVRAE--QVLEVAHAVGEAGLHLVGVFTFPGHSY---AP 114
D DV IEID HRSG+ + ++EVA + E G+HL GV T G SY P
Sbjct 124 RHDEN--FDVWIEIDCDGHRSGLTVDDPSLVEVARTLIEGGMHLRGVMTHAGSSYDLDTP 181
Query 115 GKPGEAGEQERRALNDAANALVAVGFPISCRSGGSTPTAL 154
EQERR AA + G P + S GSTPTAL
Sbjct 182 EALQALAEQERRLCVSAAERIRQAGLPCAEVSIGSTPTAL 221
>gi|256376688|ref|YP_003100348.1| alanine racemase domain-containing protein [Actinosynnema mirum
DSM 43827]
gi|255920991|gb|ACU36502.1| alanine racemase domain protein [Actinosynnema mirum DSM 43827]
Length=364
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/159 (40%), Positives = 77/159 (49%), Gaps = 16/159 (10%)
Query 1 VATIGEVEVFVDHGADDVFITYPLWIGTRQADRLRQLADR-ARIAVGAGTAEGASNTGAR 59
V+T+ E EVF D G DDV Y + I + DR+R L +R + V + E A
Sbjct 59 VSTLREAEVFADAGYDDVL--YAVGIAPSKLDRVRALRERGVDLVVLLDSVEQAE----- 111
Query 60 LADAAGAIDVLIEIDSGHHRSGVRAEQ--VLEVAHAVGEAGLHLVGVFTFPGHSYAPGKP 117
A A + L+E+D HR GV + VLE+A +G G L GV T G SY P
Sbjct 112 -AVAGQGVPALLEVDCDGHRGGVPPDSPAVLEIAGVLG--GDLLRGVLTHAGESYFRYTP 168
Query 118 GE---AGEQERRALNDAANALVAVGFPISCRSGGSTPTA 153
E A E ER A AL A GFP S GSTPTA
Sbjct 169 EELALAAEHERATAVRVAEALRAGGFPCPVVSVGSTPTA 207
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 136720389372
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40