BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1414
Length=133
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840871|ref|NP_335908.1| hypothetical protein MT1457 [Mycoba... 266 9e-70
gi|15608552|ref|NP_215930.1| hypothetical protein Rv1414 [Mycoba... 262 1e-68
gi|119963284|ref|YP_946033.1| alanine racemase N-terminal domain... 191 3e-47
gi|308178610|ref|YP_003918016.1| alanine racemase-like protein [... 159 1e-37
gi|256824351|ref|YP_003148311.1| amino acid aldolase or racemase... 150 5e-35
gi|262201693|ref|YP_003272901.1| alanine racemase domain-contain... 143 8e-33
gi|344046326|gb|EGV41992.1| hypothetical protein CgS9114_01205 [... 138 3e-31
gi|145296605|ref|YP_001139426.1| hypothetical protein cgR_2513 [... 138 3e-31
gi|326381918|ref|ZP_08203611.1| hypothetical protein SCNU_03202 ... 134 5e-30
gi|19553808|ref|NP_601810.1| hypothetical protein NCgl2520 [Cory... 134 5e-30
gi|21325381|dbj|BAC00003.1| Hypothetical protein [Corynebacteriu... 133 7e-30
gi|343928294|ref|ZP_08767747.1| hypothetical protein GOALK_112_0... 133 8e-30
gi|169628346|ref|YP_001701995.1| hypothetical protein MAB_1253c ... 132 2e-29
gi|309811986|ref|ZP_07705752.1| conserved hypothetical protein [... 129 2e-28
gi|331694412|ref|YP_004330651.1| alanine racemase domain-contain... 124 3e-27
gi|119716914|ref|YP_923879.1| alanine racemase domain-containing... 114 5e-24
gi|302552096|ref|ZP_07304438.1| alanine racemase domain-containi... 113 1e-23
gi|337763319|emb|CCB72027.1| Predicted amino acid aldolase or ra... 112 2e-23
gi|221633166|ref|YP_002522391.1| Alanine racemase, N-terminal do... 99.4 1e-19
gi|296114141|ref|ZP_06832796.1| alanine racemase [Gluconacetobac... 95.1 3e-18
gi|269837390|ref|YP_003319618.1| alanine racemase domain-contain... 93.2 1e-17
gi|288960554|ref|YP_003450894.1| alanine racemase domain-contain... 90.9 6e-17
gi|118589064|ref|ZP_01546471.1| putative amino acid processing p... 88.2 4e-16
gi|148657962|ref|YP_001278167.1| alanine racemase domain-contain... 86.7 1e-15
gi|311032754|ref|ZP_07710844.1| alanine racemase domain protein ... 85.1 3e-15
gi|13476878|ref|NP_108447.1| metal-activated pyridoxal enzyme [M... 84.7 4e-15
gi|156740573|ref|YP_001430702.1| alanine racemase domain-contain... 84.3 6e-15
gi|116255699|ref|YP_771532.1| hypothetical protein pRL110498 [Rh... 83.6 9e-15
gi|241666545|ref|YP_002984629.1| alanine racemase [Rhizobium leg... 83.2 1e-14
gi|190895618|ref|YP_001985910.1| amino acid processing protein [... 82.8 1e-14
gi|209546068|ref|YP_002277958.1| alanine racemase [Rhizobium leg... 82.4 2e-14
gi|150376682|ref|YP_001313278.1| alanine racemase domain-contain... 82.4 2e-14
gi|327192608|gb|EGE59552.1| amino acid processing protein [Rhizo... 82.0 2e-14
gi|307947153|ref|ZP_07662488.1| alanine racemase domain protein ... 82.0 2e-14
gi|161620802|ref|YP_001594688.1| alanine racemase [Brucella cani... 82.0 3e-14
gi|218515148|ref|ZP_03511988.1| putative amino acid processing p... 81.6 4e-14
gi|265985304|ref|ZP_06098039.1| alanine racemase domain-containi... 81.6 4e-14
gi|17988891|ref|NP_541524.1| metal-activated pyridoxal protein [... 81.3 4e-14
gi|23500480|ref|NP_699920.1| amino acid processing-like protein ... 81.3 5e-14
gi|306845963|ref|ZP_07478530.1| metal-activated pyridoxal protei... 81.3 5e-14
gi|225686513|ref|YP_002734485.1| alanine racemase domain-contain... 81.3 5e-14
gi|261313198|ref|ZP_05952395.1| alanine racemase domain-containi... 80.9 5e-14
gi|153011211|ref|YP_001372425.1| alanine racemase domain-contain... 80.9 5e-14
gi|306841724|ref|ZP_07474411.1| metal-activated pyridoxal protei... 80.9 6e-14
gi|27379075|ref|NP_770604.1| hypothetical protein bll3964 [Brady... 80.9 7e-14
gi|310815524|ref|YP_003963488.1| alanine racemase domain-contain... 80.5 8e-14
gi|260544654|ref|ZP_05820475.1| alanine racemase domain-containi... 80.5 8e-14
gi|343461957|gb|AEM40392.1| Alanine racemase domain protein [Ket... 80.5 8e-14
gi|218674751|ref|ZP_03524420.1| putative amino acid processing p... 80.5 9e-14
gi|338974814|ref|ZP_08630170.1| metal-activated pyridoxal enzyme... 80.1 9e-14
>gi|15840871|ref|NP_335908.1| hypothetical protein MT1457 [Mycobacterium tuberculosis CDC1551]
gi|254231655|ref|ZP_04924982.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|289554796|ref|ZP_06444006.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|298524919|ref|ZP_07012328.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|13881071|gb|AAK45722.1| hypothetical protein MT1457 [Mycobacterium tuberculosis CDC1551]
gi|124600714|gb|EAY59724.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|289439428|gb|EFD21921.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|298494713|gb|EFI30007.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=256
Score = 266 bits (679), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG
Sbjct 124 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 183
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL
Sbjct 184 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 243
Query 121 IDRWKVAARGKNH 133
IDRWKVAARGKNH
Sbjct 244 IDRWKVAARGKNH 256
>gi|15608552|ref|NP_215930.1| hypothetical protein Rv1414 [Mycobacterium tuberculosis H37Rv]
gi|31792608|ref|NP_855101.1| hypothetical protein Mb1449 [Mycobacterium bovis AF2122/97]
gi|121637344|ref|YP_977567.1| hypothetical protein BCG_1475 [Mycobacterium bovis BCG str. Pasteur
1173P2]
62 more sequence titles
Length=133
Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/133 (99%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+LGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG
Sbjct 1 MLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL
Sbjct 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
Query 121 IDRWKVAARGKNH 133
IDRWKVAARGKNH
Sbjct 121 IDRWKVAARGKNH 133
>gi|119963284|ref|YP_946033.1| alanine racemase N-terminal domain-containing protein [Arthrobacter
aurescens TC1]
gi|119950143|gb|ABM09054.1| putative alanine racemase, N-terminal domain protein [Arthrobacter
aurescens TC1]
Length=366
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/134 (70%), Positives = 110/134 (83%), Gaps = 1/134 (0%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSG-LRRIVLDCGSKILGSDRPAWATGF 59
V GDAQQLEL RC+ DIAL+VAATVVSR + R G +RR+VLD GSKILGSDRP WATG+
Sbjct 233 VFGDAQQLELERCSWDDIALSVAATVVSRHEARGGNVRRVVLDAGSKILGSDRPDWATGY 292
Query 60 GRLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
GRL ++ +A++ ALSEHHATVVWPD + LPP+GTRLRVIPNHVCLT NLVD V VV
Sbjct 293 GRLPEYPEAKVTALSEHHATVVWPDSSELPPLGTRLRVIPNHVCLTMNLVDQVIVVHGGA 352
Query 120 LIDRWKVAARGKNH 133
+ +RW VAARG+N+
Sbjct 353 VAERWTVAARGRNN 366
>gi|308178610|ref|YP_003918016.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117]
gi|307746073|emb|CBT77045.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117]
Length=366
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/133 (61%), Positives = 98/133 (74%), Gaps = 1/133 (0%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGL-RRIVLDCGSKILGSDRPAWATGF 59
V GDAQQ ELGR DI+LTVA+TV+SR + + RRIVLD GSK+LG DRPAWATG+
Sbjct 233 VFGDAQQFELGRVRWEDISLTVASTVISRHEGDGQIPRRIVLDAGSKVLGGDRPAWATGY 292
Query 60 GRLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
GR+ + +ARI+ALSEHHATV+WP+ PLP G +L+VIPNHVC+ NLVD V V +
Sbjct 293 GRIAECPEARISALSEHHATVLWPEHLPLPAHGQQLQVIPNHVCVAVNLVDTVLAVHEDG 352
Query 120 LIDRWKVAARGKN 132
+ W VAARG N
Sbjct 353 SHEVWDVAARGLN 365
>gi|256824351|ref|YP_003148311.1| amino acid aldolase or racemase [Kytococcus sedentarius DSM 20547]
gi|256687744|gb|ACV05546.1| predicted amino acid aldolase or racemase [Kytococcus sedentarius
DSM 20547]
Length=371
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/132 (60%), Positives = 92/132 (70%), Gaps = 5/132 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V+GDAQQ ELG C+ AD+ALTV ATVVS R +VLD GSK LG+DR WATGFG
Sbjct 244 VVGDAQQWELGTCSSADVALTVHATVVSHAGGR-----LVLDAGSKALGADRAGWATGFG 298
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
RL+DH +ARI LSEHHA V P+D LPP+GT +RV+PNH C NL D + V D L
Sbjct 299 RLLDHPEARIELLSEHHAVAVLPEDTELPPLGTEVRVVPNHACNAVNLTDRLWVEVDGRL 358
Query 121 IDRWKVAARGKN 132
++ W VAARG N
Sbjct 359 VESWPVAARGLN 370
>gi|262201693|ref|YP_003272901.1| alanine racemase domain-containing protein [Gordonia bronchialis
DSM 43247]
gi|262085040|gb|ACY21008.1| alanine racemase domain protein [Gordonia bronchialis DSM 43247]
Length=360
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 74/131 (57%), Positives = 95/131 (73%), Gaps = 10/131 (7%)
Query 2 LGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFGR 61
DAQQ+E+G C D+ALT ++TVV R R IV+D GSKILG+DRPAWA+GFGR
Sbjct 239 FNDAQQVEIGSCTFDDVALTSSSTVVHRNGSR-----IVVDAGSKILGADRPAWASGFGR 293
Query 62 LIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATLI 121
L++H +ARI ALSEHHA + +P DA +P +G+ +RV+PNHVC NLVD++ VV D
Sbjct 294 LLEHPEARITALSEHHAVIDFPADAAVPALGSVVRVVPNHVCSAVNLVDEL-VVDDV--- 349
Query 122 DRWKVAARGKN 132
RW VAARG+N
Sbjct 350 -RWPVAARGRN 359
>gi|344046326|gb|EGV41992.1| hypothetical protein CgS9114_01205 [Corynebacterium glutamicum
S9114]
Length=343
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/133 (50%), Positives = 87/133 (66%), Gaps = 3/133 (2%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V D+QQ+ G C +A+TV +TVVSR RRI+LD GSKIL +D+PAW G G
Sbjct 214 VFNDSQQITSGACTEKQVAMTVLSTVVSRNVSD---RRIILDAGSKILSTDKPAWIDGNG 270
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
++ + +ARI+ALSEHHAT+ WPD PLP +G +L ++PNH C NLVD+V V
Sbjct 271 FVLGNPEARISALSEHHATIFWPDKVPLPVIGEQLEIVPNHACNVINLVDEVYVREADGA 330
Query 121 IDRWKVAARGKNH 133
WKV ARG+N+
Sbjct 331 FRTWKVVARGRNN 343
>gi|145296605|ref|YP_001139426.1| hypothetical protein cgR_2513 [Corynebacterium glutamicum R]
gi|140846525|dbj|BAF55524.1| hypothetical protein [Corynebacterium glutamicum R]
Length=380
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/133 (50%), Positives = 87/133 (66%), Gaps = 3/133 (2%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V D+QQ+ G C +A+TV +TVVSR RRI+LD GSKIL +D+PAW G G
Sbjct 251 VFNDSQQITSGACTEKQVAMTVLSTVVSRNVSD---RRIILDAGSKILSTDKPAWIDGNG 307
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
++ + +ARI+ALSEHHAT+ WPD PLP +G +L ++PNH C NLVD+V V
Sbjct 308 FVLGNPEARISALSEHHATIFWPDKVPLPVIGEQLEIVPNHACNVINLVDEVYVREADGT 367
Query 121 IDRWKVAARGKNH 133
WKV ARG+N+
Sbjct 368 FRTWKVVARGRNN 380
>gi|326381918|ref|ZP_08203611.1| hypothetical protein SCNU_03202 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199344|gb|EGD56525.1| hypothetical protein SCNU_03202 [Gordonia neofelifaecis NRRL
B-59395]
Length=354
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/131 (57%), Positives = 87/131 (67%), Gaps = 8/131 (6%)
Query 4 DAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFGRLI 63
DAQQLELG C D+AL +TVVS + RIVLD GSK+LG+DRPAW TGFGRL
Sbjct 229 DAQQLELGSCGIDDVALAAISTVVS-----AAGPRIVLDAGSKVLGADRPAWTTGFGRLA 283
Query 64 DHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDV--AVVRDATLI 121
DH DARI +LSEHHA V +P +P +G +RVIPNHVC NLVDD+ D L
Sbjct 284 DHLDARIVSLSEHHAVVEFPPGTAIPTLGDVVRVIPNHVCNAVNLVDDLYAGTAPDGDL- 342
Query 122 DRWKVAARGKN 132
+ W+V ARG N
Sbjct 343 ETWQVIARGAN 353
>gi|19553808|ref|NP_601810.1| hypothetical protein NCgl2520 [Corynebacterium glutamicum ATCC
13032]
gi|62391448|ref|YP_226850.1| hypothetical protein cg2890 [Corynebacterium glutamicum ATCC
13032]
gi|41326789|emb|CAF21271.1| PUTATIVE AMINO ACID PROCESSING ENZYME [Corynebacterium glutamicum
ATCC 13032]
Length=343
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/133 (49%), Positives = 86/133 (65%), Gaps = 3/133 (2%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V D+QQ+ G C +A+TV +TVVSR RRI+LD GSKIL +D+PAW G G
Sbjct 214 VFNDSQQITSGACTEKQVAMTVLSTVVSRNVSD---RRIILDAGSKILSTDKPAWIDGNG 270
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
++ + +ARI+ALSEHHAT+ WPD LP +G +L ++PNH C NLVD+V V
Sbjct 271 FVLGNPEARISALSEHHATIFWPDKVLLPVIGEQLNIVPNHACNVINLVDEVYVREADGT 330
Query 121 IDRWKVAARGKNH 133
WKV ARG+N+
Sbjct 331 FRTWKVVARGRNN 343
>gi|21325381|dbj|BAC00003.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length=380
Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/133 (49%), Positives = 86/133 (65%), Gaps = 3/133 (2%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V D+QQ+ G C +A+TV +TVVSR RRI+LD GSKIL +D+PAW G G
Sbjct 251 VFNDSQQITSGACTEKQVAMTVLSTVVSRNVSD---RRIILDAGSKILSTDKPAWIDGNG 307
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
++ + +ARI+ALSEHHAT+ WPD LP +G +L ++PNH C NLVD+V V
Sbjct 308 FVLGNPEARISALSEHHATIFWPDKVLLPVIGEQLNIVPNHACNVINLVDEVYVREADGT 367
Query 121 IDRWKVAARGKNH 133
WKV ARG+N+
Sbjct 368 FRTWKVVARGRNN 380
>gi|343928294|ref|ZP_08767747.1| hypothetical protein GOALK_112_00310 [Gordonia alkanivorans NBRC
16433]
gi|343761824|dbj|GAA14673.1| hypothetical protein GOALK_112_00310 [Gordonia alkanivorans NBRC
16433]
Length=361
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/135 (52%), Positives = 91/135 (68%), Gaps = 10/135 (7%)
Query 2 LGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFGR 61
DAQQ+E+G C +++LT ATVV R + R+VLD GSKILG+DR AWATG+GR
Sbjct 234 FNDAQQVEIGSCGFDEVSLTAVATVVRRDN-----HRVVLDAGSKILGADRAAWATGYGR 288
Query 62 LIDHADARIAALSEHHATVVWP---DDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDA 118
L+DH DARI LSEHHA V +P D +P +G+ +RV+PNHVC NLVD++ + +
Sbjct 289 LLDHHDARIVMLSEHHAVVEFPAGSSDERIPGIGSFVRVVPNHVCNAVNLVDELVAIDGS 348
Query 119 TLIDRWKVAARGKNH 133
RW V ARG+N+
Sbjct 349 DT--RWPVIARGRNN 361
>gi|169628346|ref|YP_001701995.1| hypothetical protein MAB_1253c [Mycobacterium abscessus ATCC
19977]
gi|169240313|emb|CAM61341.1| Conserved hypothetical protein (alanine racemase?) [Mycobacterium
abscessus]
Length=360
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/131 (58%), Positives = 86/131 (66%), Gaps = 8/131 (6%)
Query 2 LGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFGR 61
DAQQLEL C DIAL+ TVV + R V+D GSKILG+DRP WATGFGR
Sbjct 237 FNDAQQLELDVCTLDDIALSAVTTVVHARG-----RTAVVDAGSKILGADRPGWATGFGR 291
Query 62 LIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATLI 121
+ID DARI ALSEHHAT+ +P A PP GTRLRV PNH+C NLVD + V+ A +
Sbjct 292 VIDEPDARIVALSEHHATIEFPGAA--PPPGTRLRVAPNHLCNAVNLVDSL-VIDAADGV 348
Query 122 DRWKVAARGKN 132
W VAARG N
Sbjct 349 RHWAVAARGAN 359
>gi|309811986|ref|ZP_07705752.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
gi|308434044|gb|EFP57910.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
Length=169
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/132 (54%), Positives = 85/132 (65%), Gaps = 6/132 (4%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V DAQQ ELG CA DIALT A VVS R+VLD GS+ L +D+ WA+G G
Sbjct 43 VFNDAQQWELGACAAGDIALTAHARVVSHSG-----GRLVLDAGSETLAADKAPWASGHG 97
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
RL+DH DARI +SEHH VV A LP +G+ +RV+PNH C NL + V VVR+ TL
Sbjct 98 RLLDHPDARIVQMSEHHG-VVDMAGASLPALGSTVRVVPNHCCNAINLANAVDVVRNGTL 156
Query 121 IDRWKVAARGKN 132
+D W VAARG N
Sbjct 157 VDTWAVAARGMN 168
>gi|331694412|ref|YP_004330651.1| alanine racemase domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326949101|gb|AEA22798.1| alanine racemase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length=374
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/132 (48%), Positives = 80/132 (61%), Gaps = 5/132 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V DAQQ+ELG C D+ALT TVVSR+ R +VLD G K+LG+DRP WATG G
Sbjct 247 VFNDAQQVELGTCGWDDVALTAVGTVVSREAGR-----VVLDAGGKVLGADRPVWATGAG 301
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
R+ +AR+ LSEHHA V +P+ LP +G RL + PNHVC NL + V +
Sbjct 302 RVPSVPEARVVLLSEHHAVVAFPEGVALPELGERLAMAPNHVCAAANLAREYVVSAGGAI 361
Query 121 IDRWKVAARGKN 132
+ RW + A G N
Sbjct 362 VGRWPITAAGAN 373
>gi|119716914|ref|YP_923879.1| alanine racemase domain-containing protein [Nocardioides sp.
JS614]
gi|119537575|gb|ABL82192.1| alanine racemase domain protein [Nocardioides sp. JS614]
Length=360
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/134 (52%), Positives = 85/134 (64%), Gaps = 9/134 (6%)
Query 2 LGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFGR 61
GDAQQ ELG AP D+ALT ATVVS R +VLD GSK LG+DR A+ATG+GR
Sbjct 232 FGDAQQWELGSAAPDDLALTCRATVVSHAGGR-----LVLDAGSKALGADRAAYATGWGR 286
Query 62 LIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVR---DA 118
L + DAR+ LSEHHA VV APLP +G+R+ V+PNHVC NL D + +
Sbjct 287 LPAYPDARVVQLSEHHA-VVDLTGAPLPRLGSRVDVVPNHVCAAVNLADTLWADHGPDGS 345
Query 119 TLIDRWKVAARGKN 132
++ W V ARG+N
Sbjct 346 DALEPWPVTARGRN 359
>gi|302552096|ref|ZP_07304438.1| alanine racemase domain-containing protein [Streptomyces viridochromogenes
DSM 40736]
gi|302469714|gb|EFL32807.1| alanine racemase domain-containing protein [Streptomyces viridochromogenes
DSM 40736]
Length=364
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/132 (47%), Positives = 76/132 (58%), Gaps = 4/132 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V DA QL +G C D+AL A+TV+S R VLD GSK LGSDR W TG G
Sbjct 236 VFNDATQLAIGTCGVEDLALVAASTVISV----PAPDRFVLDVGSKALGSDRSPWVTGHG 291
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L I L EHHA V P+ P +G+ + V+PNH+C NL D++ VVRD +
Sbjct 292 YLPQFPQGSITGLWEHHAVVRLPEGVRGPRLGSVVAVVPNHICTPVNLADELLVVRDRKV 351
Query 121 IDRWKVAARGKN 132
IDRW+V ARG N
Sbjct 352 IDRWQVTARGAN 363
>gi|337763319|emb|CCB72027.1| Predicted amino acid aldolase or racemase [Streptomyces cattleya
NRRL 8057]
Length=365
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 80/132 (61%), Gaps = 4/132 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V DA QL +G CA ADIAL ATVVS R VLD GSK++G+D W +G G
Sbjct 237 VFNDAAQLAMGSCAAADIALYALATVVSV----PAPDRFVLDAGSKVIGADTTPWVSGHG 292
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L D A + ALSEHHATV P P +G+ + V+PNHVC NLVD++ VV +
Sbjct 293 HLPDFPGAAVTALSEHHATVTLPAGTAAPGLGSLVAVVPNHVCAAVNLVDELVVVDGTGV 352
Query 121 IDRWKVAARGKN 132
+DRW VAARG N
Sbjct 353 VDRWPVAARGAN 364
>gi|221633166|ref|YP_002522391.1| Alanine racemase, N-terminal domain family [Thermomicrobium roseum
DSM 5159]
gi|221156807|gb|ACM05934.1| Alanine racemase, N-terminal domain family [Thermomicrobium roseum
DSM 5159]
Length=370
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/131 (42%), Positives = 72/131 (55%), Gaps = 5/131 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWA-TGF 59
V DA GR P +AL V ATV+SR R V+D GSK L D P TG+
Sbjct 241 VFYDAAAFRFGRIGPDRVALRVLATVISR----PAPDRAVIDAGSKTLTYDPPPPGRTGY 296
Query 60 GRLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
G ++++ DA I+ LSE H + +P P VG R+ +IPNHVC NL D++ VVR
Sbjct 297 GYVVEYPDAVISRLSEEHGVIEFPPGTKGPQVGERIEIIPNHVCPVVNLQDELFVVRGGE 356
Query 120 LIDRWKVAARG 130
+ W+V ARG
Sbjct 357 FVGTWRVIARG 367
>gi|296114141|ref|ZP_06832796.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769]
gi|295979217|gb|EFG85940.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769]
Length=355
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/128 (43%), Positives = 74/128 (58%), Gaps = 7/128 (5%)
Query 4 DAQQLELGRCAPADIALTVAATVVSR-QDCRSGLRRIVLDCGSKILGSDRPAWATGFGRL 62
D Q+ G D AL+V ATV+SR D R+ ++D G+K L SD G+G +
Sbjct 231 DRSQVAAGAATIGDCALSVLATVISRPTDTRA-----IIDAGTKTLTSDLLGQ-DGYGHI 284
Query 63 IDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATLID 122
I H D+RI ALSE H T+ LP +G ++R+IPNH C+ TN+ D + +V D +ID
Sbjct 285 IGHEDSRITALSEEHGTIHSGGGTSLPAIGDKVRIIPNHACVVTNMFDHIYLVSDGKVID 344
Query 123 RWKVAARG 130
R V ARG
Sbjct 345 RLPVIARG 352
>gi|269837390|ref|YP_003319618.1| alanine racemase domain-containing protein [Sphaerobacter thermophilus
DSM 20745]
gi|269786653|gb|ACZ38796.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
20745]
Length=366
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/131 (41%), Positives = 69/131 (53%), Gaps = 4/131 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V D GR +L + ATV+SR R V+D GSK L D P G G
Sbjct 238 VFNDNSAFRFGRIGVDGCSLRILATVISR----PAPDRAVIDAGSKTLAMDPPQGRKGHG 293
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
++++ DA IA LSE H V+ P VG R+ VIPNHVC T NL D++ +VRD +
Sbjct 294 YIVEYPDAVIARLSEEHGVVLLPPGMQGMEVGERVEVIPNHVCPTINLQDEMFLVRDGEV 353
Query 121 IDRWKVAARGK 131
+ W + ARGK
Sbjct 354 AETWPIIARGK 364
>gi|288960554|ref|YP_003450894.1| alanine racemase domain-containing protein [Azospirillum sp.
B510]
gi|288912862|dbj|BAI74350.1| alanine racemase domain-containing protein [Azospirillum sp.
B510]
Length=352
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/116 (46%), Positives = 70/116 (61%), Gaps = 6/116 (5%)
Query 17 DIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDR--PAWATGFGRLIDHADARIAALS 74
+ A+ V ATVVSR R VLDCGSK L SDR P+ G+G ++D+ DA I ++
Sbjct 238 ECAVHVRATVVSRPT----PDRAVLDCGSKTLSSDRVAPSVGEGYGLILDYPDAVIVRVN 293
Query 75 EHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATLIDRWKVAARG 130
E HA V A P +G R+R++PNHVC+ TNL D + V RD ++ W V ARG
Sbjct 294 EEHAVVDLSHCATKPEIGDRVRILPNHVCVVTNLHDRMVVSRDGEVVGNWPVPARG 349
>gi|118589064|ref|ZP_01546471.1| putative amino acid processing protein [Stappia aggregata IAM
12614]
gi|118438393|gb|EAV45027.1| putative amino acid processing protein [Stappia aggregata IAM
12614]
Length=334
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/131 (42%), Positives = 71/131 (55%), Gaps = 5/131 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D + G C D A+ V ATVVSR R VLD GSK L SD + + G
Sbjct 207 IFNDRAMVRAGMCDVDDCAMHVLATVVSRPT----ENRAVLDAGSKALTSDLLGF-SDHG 261
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
LID+ +A I ALSE HA V + A P +G R+R+IPNH C+ +NL D + +D +
Sbjct 262 LLIDYPEASITALSEEHAVVDLTNSASKPQIGERVRIIPNHTCVVSNLFDQLVFHKDGVV 321
Query 121 IDRWKVAARGK 131
VAARG+
Sbjct 322 TRIETVAARGQ 332
>gi|148657962|ref|YP_001278167.1| alanine racemase domain-containing protein [Roseiflexus sp. RS-1]
gi|148570072|gb|ABQ92217.1| alanine racemase domain protein [Roseiflexus sp. RS-1]
Length=349
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/130 (41%), Positives = 71/130 (55%), Gaps = 5/130 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ GD L G + ALT+ TVVSR G V+D GSK SD G+G
Sbjct 222 IYGDRYTLRAGAMQLEECALTIITTVVSRPTPDRG----VIDGGSKTFSSDLLGL-EGYG 276
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
++++ DARI +LSE H V + A P VG R+ VIPNH C+ +NL D++ VR +
Sbjct 277 LILEYPDARIVSLSEEHGVVDFSRCAQRPAVGERVSVIPNHCCVVSNLFDEMVGVRRGEV 336
Query 121 IDRWKVAARG 130
W+VAARG
Sbjct 337 EVIWRVAARG 346
>gi|311032754|ref|ZP_07710844.1| alanine racemase domain protein [Bacillus sp. m3-13]
Length=390
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/134 (40%), Positives = 72/134 (54%), Gaps = 10/134 (7%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWA---- 56
V D+ Q+ LG AD ALTV A+VV + R IVLD GSK L D+ A
Sbjct 239 VFFDSIQVGLGVADRADCALTVLASVVGVYEGR-----IVLDTGSKTLCLDKGAHGLDSV 293
Query 57 TGFGRLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVR 116
G+G ++DH + I LSE H V+ L + ++R+IPNH C N+ ++ VV
Sbjct 294 KGYGFVVDHPELTIERLSEEHGVAVFEGSCDLR-LNDKVRIIPNHACTVANMFEEYVVVE 352
Query 117 DATLIDRWKVAARG 130
++DRWKV ARG
Sbjct 353 GEHVVDRWKVDARG 366
>gi|13476878|ref|NP_108447.1| metal-activated pyridoxal enzyme [Mesorhizobium loti MAFF303099]
gi|14027639|dbj|BAB53908.1| metal-activated pyridoxal enzyme [Mesorhizobium loti MAFF303099]
Length=352
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/128 (43%), Positives = 71/128 (56%), Gaps = 6/128 (4%)
Query 4 DAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFGRLI 63
D Q+ G D ALTV ATVVS R +LD GSK L SD FG L+
Sbjct 229 DRYQVAKGVGTLDDCALTVLATVVSHPTAT----RAILDSGSKALSSDTLGLKD-FGELL 283
Query 64 DHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATLIDR 123
DAR+ LSE H TV DA L +G R+RV+P+H C+ TNL ++V ++ T+++
Sbjct 284 GAPDARVTGLSEEHGTVTLSGDAKLR-IGERVRVVPDHCCVVTNLFNEVNLIDGETVLET 342
Query 124 WKVAARGK 131
VAARGK
Sbjct 343 LPVAARGK 350
>gi|156740573|ref|YP_001430702.1| alanine racemase domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156231901|gb|ABU56684.1| alanine racemase domain protein [Roseiflexus castenholzii DSM
13941]
Length=349
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/130 (40%), Positives = 70/130 (54%), Gaps = 5/130 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
V GD L G + A++V TVVSR G V+D GSK SD G+G
Sbjct 222 VYGDRYTLRAGALRLEECAMSVLTTVVSRPTPDRG----VIDGGSKTFSSDLLGL-EGYG 276
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
++++ +ARI LSE H V + A P +G R+RV+PNH C+ +NL D+V R +
Sbjct 277 LILEYPEARIVNLSEEHGVVDFSQCAQKPAIGERVRVLPNHCCVVSNLFDEVIGARRGEV 336
Query 121 IDRWKVAARG 130
W+VAARG
Sbjct 337 ETIWRVAARG 346
>gi|116255699|ref|YP_771532.1| hypothetical protein pRL110498 [Rhizobium leguminosarum bv. viciae
3841]
gi|115260347|emb|CAK03451.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length=366
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/131 (38%), Positives = 71/131 (55%), Gaps = 6/131 (4%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q + +G C D A+ V ATVVSR + R V+D GSK L SD ++ +G
Sbjct 238 IYNDRQMVRMGHCTEDDCAMHVLATVVSRPNAD----RAVIDAGSKALTSDLQGFSD-YG 292
Query 61 RLIDHADARIAALSEHHATVVWPD-DAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
++ + +ARI++LSE H + P P +G RL +IPNH C+ +NL D + R
Sbjct 293 LVVGYPEARISSLSEEHGVIDLSSCTGPRPQIGERLFIIPNHTCVVSNLFDTMVFHRGGI 352
Query 120 LIDRWKVAARG 130
+ VAARG
Sbjct 353 VTRVEDVAARG 363
>gi|241666545|ref|YP_002984629.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240862002|gb|ACS59667.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length=366
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/131 (36%), Positives = 73/131 (56%), Gaps = 6/131 (4%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q + +G C + A+ V ATVVSR + R V+D GSK L SD ++ +G
Sbjct 238 IYNDRQMVRMGHCTEDNCAMHVLATVVSRPNAD----RAVIDAGSKALTSDLQGFSD-YG 292
Query 61 RLIDHADARIAALSEHHATVVWPD-DAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
++ + +ARI++LSE H + + P P +G +L +IPNH C+ +NL D + R
Sbjct 293 LVVGYPEARISSLSEEHGVIDLSNCTGPRPQIGQKLFIIPNHTCVVSNLFDTMVFHRGGV 352
Query 120 LIDRWKVAARG 130
+ +VAARG
Sbjct 353 VTRVEQVAARG 363
>gi|190895618|ref|YP_001985910.1| amino acid processing protein [Rhizobium etli CIAT 652]
gi|190699563|gb|ACE93647.1| putative amino acid processing protein [Rhizobium etli CIAT 652]
Length=366
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/131 (38%), Positives = 69/131 (53%), Gaps = 6/131 (4%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q + +G C D A+ V ATVVSR R V+D GSK L SD ++ +G
Sbjct 238 IYNDRQMVRMGHCGEDDCAMHVLATVVSRPTAD----RAVIDAGSKALTSDLQGFSD-YG 292
Query 61 RLIDHADARIAALSEHHATVVWPD-DAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
++ + ARI +LSE H + D P P +G +L +IPNH C+ +NL D + R
Sbjct 293 LIVGYPQARITSLSEEHGVIDLSDCTGPRPQIGEKLFIIPNHTCVVSNLFDTMVFHRGGV 352
Query 120 LIDRWKVAARG 130
+ VAARG
Sbjct 353 VTRVEAVAARG 363
>gi|209546068|ref|YP_002277958.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538925|gb|ACI58858.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length=366
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/131 (37%), Positives = 71/131 (55%), Gaps = 6/131 (4%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q + +G C D A+ V ATVVSR R V+D GSK L SD ++ +G
Sbjct 238 IYNDRQMVRMGHCTEDDCAMHVLATVVSRPTAD----RAVIDAGSKALTSDLQGFSD-YG 292
Query 61 RLIDHADARIAALSEHHATVVWPD-DAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
++ + ARI++LSE H + + P P +G +L +IPNH C+ +NL D + R
Sbjct 293 LIVGYPQARISSLSEEHGVIDLANCTGPRPQIGEKLFIIPNHTCVVSNLFDTMVFHRGGV 352
Query 120 LIDRWKVAARG 130
+ +VAARG
Sbjct 353 VTRVERVAARG 363
>gi|150376682|ref|YP_001313278.1| alanine racemase domain-containing protein [Sinorhizobium medicae
WSM419]
gi|150031229|gb|ABR63345.1| alanine racemase domain protein [Sinorhizobium medicae WSM419]
Length=352
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/115 (46%), Positives = 67/115 (59%), Gaps = 6/115 (5%)
Query 17 DIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFGRLIDHADARIAALSEH 76
D ALTV ATVVS R ++D GSK+L SD TG+G ++D D RI LSE
Sbjct 242 DCALTVLATVVSVPS----ENRAIIDAGSKVLTSDLLGL-TGYGHVLDRDDIRIDQLSEE 296
Query 77 HATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATLIDRWKVAARGK 131
H +V D + VG +LR++PNH C+ TN+VD V V+ D T W V ARG+
Sbjct 297 HGRLV-SDGSIRLTVGQQLRIVPNHACVVTNMVDAVHVIEDGTPKGTWPVVARGR 350
>gi|327192608|gb|EGE59552.1| amino acid processing protein [Rhizobium etli CNPAF512]
Length=366
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/131 (37%), Positives = 70/131 (54%), Gaps = 6/131 (4%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q + +G C D A+ V ATVVSR R V+D GSK L SD + + +G
Sbjct 238 IYNDRQMVRMGHCTEDDCAMHVLATVVSRPTAD----RAVIDAGSKALTSDLQGF-SDYG 292
Query 61 RLIDHADARIAALSEHHATVVWPD-DAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
++ + ARI +LSE H + + P P +G +L +IPNH C+ +NL D + R
Sbjct 293 LIVGYPQARITSLSEEHGVIDLSNCTGPRPQIGEKLFIIPNHTCVVSNLFDTMVFHRGGV 352
Query 120 LIDRWKVAARG 130
+ +VAARG
Sbjct 353 VTRVEEVAARG 363
>gi|307947153|ref|ZP_07662488.1| alanine racemase domain protein [Roseibium sp. TrichSKD4]
gi|307770817|gb|EFO30043.1| alanine racemase domain protein [Roseibium sp. TrichSKD4]
Length=355
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/130 (40%), Positives = 68/130 (53%), Gaps = 5/130 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D + G C D A+ V ATVVSR R VLD GSK L SD + +G
Sbjct 228 IFNDRAMVRAGLCDFDDCAMHVVATVVSR----PTETRAVLDSGSKALTSDLLGF-EDYG 282
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
++D+ +A I ALSE HA V + P +G RLR+IPNH C+ +NL D + + +
Sbjct 283 HVVDYPEASITALSEEHAVVDLSKCSKKPEIGERLRIIPNHTCVVSNLYDQLVFHKSGHV 342
Query 121 IDRWKVAARG 130
VAARG
Sbjct 343 SAVETVAARG 352
>gi|161620802|ref|YP_001594688.1| alanine racemase [Brucella canis ATCC 23365]
gi|161337613|gb|ABX63917.1| Alanine racemase [Brucella canis ATCC 23365]
Length=355
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 71/131 (55%), Gaps = 7/131 (5%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G D ALTV ATVVS + R ++D GSK L SD A FG
Sbjct 230 IYFDRYQVAEGAATINDCALTVLATVVSHPTPK----RAIIDAGSKALSSDTLGLAD-FG 284
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L+D AR+ LSE H V D +G R+RVIP+HVC+ +NL D+V +V +
Sbjct 285 ELMDRPLARVTGLSEEHGKVTG--DVANLNIGDRVRVIPDHVCVVSNLFDEVHLVSGEEV 342
Query 121 IDRWKVAARGK 131
ID VAARGK
Sbjct 343 IDILPVAARGK 353
>gi|218515148|ref|ZP_03511988.1| putative amino acid processing protein [Rhizobium etli 8C-3]
Length=140
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/131 (37%), Positives = 70/131 (54%), Gaps = 6/131 (4%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q + +G C+ D A+ V ATVVSR R V+D GSK L SD ++ +G
Sbjct 12 IYNDRQMVRMGHCSEDDCAMHVLATVVSRPTAD----RAVIDAGSKALTSDLQGFSD-YG 66
Query 61 RLIDHADARIAALSEHHATVVWPD-DAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
++ + ARI +LSE H + + P P +G +L +IPNH C+ +NL D + R
Sbjct 67 LIVGYPQARITSLSEEHGVIDLSNCTGPRPQIGEKLFIIPNHTCVVSNLFDTMVFHRGGI 126
Query 120 LIDRWKVAARG 130
+ VAARG
Sbjct 127 VTRVEDVAARG 137
>gi|265985304|ref|ZP_06098039.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306839821|ref|ZP_07472620.1| metal-activated pyridoxal protein [Brucella sp. NF 2653]
gi|264663896|gb|EEZ34157.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306405097|gb|EFM61377.1| metal-activated pyridoxal protein [Brucella sp. NF 2653]
Length=355
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 70/131 (54%), Gaps = 7/131 (5%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G D ALTV ATVVS R ++D GSK L SD A FG
Sbjct 230 IYFDRYQVAEGAATINDCALTVLATVVSHPTPE----RAIIDAGSKALSSDTLGLAD-FG 284
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L+D AR+ LSE H V D +G R+RVIP+HVC+ +NL D+V +V +
Sbjct 285 ELMDRPLARVTGLSEEHGKVTG--DVANLNIGDRVRVIPDHVCVVSNLFDEVHLVSGEEV 342
Query 121 IDRWKVAARGK 131
ID VAARGK
Sbjct 343 IDILSVAARGK 353
>gi|17988891|ref|NP_541524.1| metal-activated pyridoxal protein [Brucella melitensis bv. 1
str. 16M]
gi|225629220|ref|ZP_03787253.1| metal-activated pyridoxal protein [Brucella ceti str. Cudo]
gi|17984718|gb|AAL53788.1| metal-activated pyridoxal enzyme [Brucella melitensis bv. 1 str.
16M]
gi|225615716|gb|EEH12765.1| metal-activated pyridoxal protein [Brucella ceti str. Cudo]
Length=360
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 70/131 (54%), Gaps = 7/131 (5%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G D ALTV ATVVS R ++D GSK L SD A FG
Sbjct 235 IYFDRYQVAEGAATINDCALTVLATVVSHPTPE----RAIIDAGSKALSSDTLGLAD-FG 289
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L+D AR+ LSE H V D +G R+RVIP+HVC+ +NL D+V +V +
Sbjct 290 ELMDRPLARVTGLSEEHGKVTG--DVANLNIGDRVRVIPDHVCVVSNLFDEVHLVSGEEV 347
Query 121 IDRWKVAARGK 131
ID VAARGK
Sbjct 348 IDILPVAARGK 358
>gi|23500480|ref|NP_699920.1| amino acid processing-like protein [Brucella suis 1330]
gi|148557939|ref|YP_001257694.1| amino acid processing-like protein [Brucella ovis ATCC 25840]
gi|163844874|ref|YP_001622529.1| hypothetical protein BSUIS_B0735 [Brucella suis ATCC 23445]
32 more sequence titles
Length=355
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 70/131 (54%), Gaps = 7/131 (5%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G D ALTV ATVVS R ++D GSK L SD A FG
Sbjct 230 IYFDRYQVAEGAATINDCALTVLATVVSHPTPE----RAIIDAGSKALSSDTLGLAD-FG 284
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L+D AR+ LSE H V D +G R+RVIP+HVC+ +NL D+V +V +
Sbjct 285 ELMDRPLARVTGLSEEHGKVTG--DVANLNIGDRVRVIPDHVCVVSNLFDEVHLVSGEEV 342
Query 121 IDRWKVAARGK 131
ID VAARGK
Sbjct 343 IDILPVAARGK 353
>gi|306845963|ref|ZP_07478530.1| metal-activated pyridoxal protein [Brucella sp. BO1]
gi|306273598|gb|EFM55443.1| metal-activated pyridoxal protein [Brucella sp. BO1]
Length=355
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 70/131 (54%), Gaps = 7/131 (5%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G D ALTV ATVVS R ++D GSK L SD A FG
Sbjct 230 IYFDRYQVAEGAATINDCALTVLATVVSHPTPE----RAIIDAGSKALSSDTLGLAD-FG 284
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L+D AR+ LSE H V D +G R+RVIP+HVC+ +NL D+V +V +
Sbjct 285 ELMDRPLARVTGLSEEHGKVTG--DVANLNIGDRVRVIPDHVCVVSNLFDEVHLVSGEEV 342
Query 121 IDRWKVAARGK 131
ID VAARGK
Sbjct 343 IDILPVAARGK 353
>gi|225686513|ref|YP_002734485.1| alanine racemase domain-containing protein [Brucella melitensis
ATCC 23457]
gi|256262349|ref|ZP_05464881.1| alanine racemase domain-containing protein [Brucella melitensis
bv. 2 str. 63/9]
gi|225642618|gb|ACO02531.1| alanine racemase domain protein [Brucella melitensis ATCC 23457]
gi|263092078|gb|EEZ16375.1| alanine racemase domain-containing protein [Brucella melitensis
bv. 2 str. 63/9]
gi|326410894|gb|ADZ67958.1| alanine racemase domain-containing protein [Brucella melitensis
M28]
gi|326554185|gb|ADZ88824.1| alanine racemase domain-containing protein [Brucella melitensis
M5-90]
Length=355
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 70/131 (54%), Gaps = 7/131 (5%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G D ALTV ATVVS R ++D GSK L SD A FG
Sbjct 230 IYFDRYQVAEGAATINDCALTVLATVVSHPTPE----RAIIDAGSKALSSDTLGLAD-FG 284
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L+D AR+ LSE H V D +G R+RVIP+HVC+ +NL D+V +V +
Sbjct 285 ELMDRPLARVTGLSEEHGKVTG--DVANLNIGDRVRVIPDHVCVVSNLFDEVHLVSGEEV 342
Query 121 IDRWKVAARGK 131
ID VAARGK
Sbjct 343 IDILPVAARGK 353
>gi|261313198|ref|ZP_05952395.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261302224|gb|EEY05721.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
Length=355
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 70/131 (54%), Gaps = 7/131 (5%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G D ALTV ATVVS R ++D GSK L SD A FG
Sbjct 230 IYFDRYQVAEGAATINDCALTVLATVVSHPTPE----RAIIDAGSKALSSDTLGLAD-FG 284
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L+D AR+ LSE H V D +G R+RVIP+HVC+ +NL D+V +V +
Sbjct 285 ELMDRPLARVTGLSEEHGKVTG--DVANLNIGDRVRVIPDHVCVVSNLFDEVHLVSGEEV 342
Query 121 IDRWKVAARGK 131
ID VAARGK
Sbjct 343 IDILPVAARGK 353
>gi|153011211|ref|YP_001372425.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151563099|gb|ABS16596.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
Length=354
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/131 (41%), Positives = 71/131 (55%), Gaps = 7/131 (5%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+E D ALTV +TVVS R ++D GSK L SD + FG
Sbjct 229 IYFDRYQVEKAAATVDDCALTVLSTVVSHPTSE----RAIIDAGSKALSSDTLGL-SDFG 283
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
++ DAR+ LSE H +V D VG RLR+IP+HVC+ +NL D+V +V +
Sbjct 284 EVMGRPDARVIGLSEEHGKLVG--DVAGLKVGERLRIIPDHVCVVSNLFDEVHLVSGEDV 341
Query 121 IDRWKVAARGK 131
+D VAARGK
Sbjct 342 VDILPVAARGK 352
>gi|306841724|ref|ZP_07474411.1| metal-activated pyridoxal protein [Brucella sp. BO2]
gi|306288254|gb|EFM59638.1| metal-activated pyridoxal protein [Brucella sp. BO2]
Length=355
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 70/131 (54%), Gaps = 7/131 (5%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G D ALTV ATVVS R ++D GSK L SD A FG
Sbjct 230 IYFDRYQVAEGAATINDCALTVLATVVSHPTPE----RAIIDAGSKALSSDTLGLAD-FG 284
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
L+D AR+ LSE H V D +G R+RVIP+HVC+ +NL D+V +V +
Sbjct 285 ELMDRPLARVTGLSEEHGKVTG--DVANLNIGDRVRVIPDHVCVVSNLFDEVHLVSGEEV 342
Query 121 IDRWKVAARGK 131
ID VAARGK
Sbjct 343 IDILPVAARGK 353
>gi|27379075|ref|NP_770604.1| hypothetical protein bll3964 [Bradyrhizobium japonicum USDA 110]
gi|27352225|dbj|BAC49229.1| bll3964 [Bradyrhizobium japonicum USDA 110]
Length=359
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/131 (38%), Positives = 71/131 (55%), Gaps = 5/131 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G D AL + +TVVSR + R +LD GSK L +D G G
Sbjct 232 IYNDRMQVAAGSATWDDCALHIYSTVVSR----AAPERGILDAGSKTLTTDTGGL-DGHG 286
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
+++H +A+IA +E H + P VG +R+IPNHVC+ N++D+V +VR +
Sbjct 287 LILEHPEAKIARFAEEHGFLDLSRSNTRPNVGDVVRIIPNHVCVVVNMMDEVVMVRGEEI 346
Query 121 IDRWKVAARGK 131
I VAARGK
Sbjct 347 IGTLPVAARGK 357
>gi|310815524|ref|YP_003963488.1| alanine racemase domain-containing protein [Ketogulonicigenium
vulgare Y25]
gi|308754259|gb|ADO42188.1| alanine racemase domain-containing protein [Ketogulonicigenium
vulgare Y25]
Length=265
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/131 (39%), Positives = 71/131 (55%), Gaps = 5/131 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWA-TGF 59
+ D + G + D AL V ATV+S + G ++D G+K L SD A G+
Sbjct 118 IYNDRNMIAAGAASVDDCALHVIATVISTP--KPG--HFIIDAGTKTLTSDLSGAAHPGY 173
Query 60 GRLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
G L D+ DA I L+E H V P P +G ++R+IPNHVC +NL D + VVR
Sbjct 174 GYLRDYPDAVIERLTEEHGIVRIDPALPAPKIGEKIRIIPNHVCPVSNLHDTITVVRGDG 233
Query 120 LIDRWKVAARG 130
+ D W+V+ARG
Sbjct 234 VQDIWQVSARG 244
>gi|260544654|ref|ZP_05820475.1| alanine racemase domain-containing protein [Brucella abortus
NCTC 8038]
gi|260756503|ref|ZP_05868851.1| alanine racemase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260759935|ref|ZP_05872283.1| alanine racemase domain-containing protein [Brucella abortus
bv. 4 str. 292]
7 more sequence titles
Length=300
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/128 (44%), Positives = 68/128 (54%), Gaps = 7/128 (5%)
Query 4 DAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFGRLI 63
D Q+ G D ALTV ATVVS R + D GSK L SD A FG L+
Sbjct 178 DRYQVAEGAATINDCALTVLATVVSHPTPE----RAISDAGSKALSSDTLGLAD-FGELM 232
Query 64 DHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATLIDR 123
D AR+ LSE H V D +G R+RVIP+HVC+ +NL D+V +V +ID
Sbjct 233 DRPLARVTGLSEEHGKVTG--DVANLNIGDRMRVIPDHVCVVSNLFDEVHLVSGEEVIDI 290
Query 124 WKVAARGK 131
VAARGK
Sbjct 291 LPVAARGK 298
>gi|343461957|gb|AEM40392.1| Alanine racemase domain protein [Ketogulonigenium vulgarum WSH-001]
Length=351
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/131 (39%), Positives = 71/131 (55%), Gaps = 5/131 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWA-TGF 59
+ D + G + D AL V ATV+S + G ++D G+K L SD A G+
Sbjct 222 IYNDRNMIAAGAASVDDCALHVIATVISTP--KPG--HFIIDAGTKTLTSDLSGAAHPGY 277
Query 60 GRLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
G L D+ DA I L+E H V P P +G ++R+IPNHVC +NL D + VVR
Sbjct 278 GYLRDYPDAVIERLTEEHGIVRIDPALPAPKIGEKIRIIPNHVCPVSNLHDTITVVRGDG 337
Query 120 LIDRWKVAARG 130
+ D W+V+ARG
Sbjct 338 VQDIWQVSARG 348
>gi|218674751|ref|ZP_03524420.1| putative amino acid processing protein [Rhizobium etli GR56]
Length=176
Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/131 (38%), Positives = 69/131 (53%), Gaps = 6/131 (4%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q + +G C D A+ V ATVVSR R V+D GSK L SD ++ +G
Sbjct 48 IYNDRQMVRMGHCTEDDCAMHVLATVVSRPTAD----RAVIDAGSKALTSDLQGFSD-YG 102
Query 61 RLIDHADARIAALSEHHATV-VWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDAT 119
++ + ARI +LSE H + + P P +G +L VIPNH C+ +NL D + R
Sbjct 103 LIVGYPQARITSLSEEHGVIDLSTCTGPRPQIGEKLFVIPNHTCVVSNLFDTMVFHRGGI 162
Query 120 LIDRWKVAARG 130
+ VAARG
Sbjct 163 VTRVEDVAARG 173
>gi|338974814|ref|ZP_08630170.1| metal-activated pyridoxal enzyme [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231909|gb|EGP07043.1| metal-activated pyridoxal enzyme [Bradyrhizobiaceae bacterium
SG-6C]
Length=359
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/131 (38%), Positives = 71/131 (55%), Gaps = 5/131 (3%)
Query 1 VLGDAQQLELGRCAPADIALTVAATVVSRQDCRSGLRRIVLDCGSKILGSDRPAWATGFG 60
+ D Q+ G + D AL V +TVVSR G +LD GSK L +D G+G
Sbjct 232 IYNDRMQVAAGVASWDDCALHVYSTVVSRASPDRG----ILDAGSKTLTADTGGL-DGYG 286
Query 61 RLIDHADARIAALSEHHATVVWPDDAPLPPVGTRLRVIPNHVCLTTNLVDDVAVVRDATL 120
+++H ARIA +E H + + P VG +R++PNHVC+ N+ D+V +VR +
Sbjct 287 LILEHPQARIARFAEEHGFLDLTNSNSRPAVGDVVRIVPNHVCVVVNMSDEVVMVRGDEI 346
Query 121 IDRWKVAARGK 131
+ VAARGK
Sbjct 347 VGILPVAARGK 357
Lambda K H
0.323 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130457467840
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40