BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1421
Length=301
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608559|ref|NP_215937.1| hypothetical protein Rv1421 [Mycoba... 606 1e-171
gi|289554789|ref|ZP_06443999.1| conserved hypothetical protein [... 604 6e-171
gi|240171791|ref|ZP_04750450.1| hypothetical protein MkanA1_2092... 533 2e-149
gi|118617430|ref|YP_905762.1| hypothetical protein MUL_1815 [Myc... 526 1e-147
gi|15827214|ref|NP_301477.1| hypothetical protein ML0563 [Mycoba... 525 4e-147
gi|254822012|ref|ZP_05227013.1| hypothetical protein MintA_18912... 521 5e-146
gi|296170711|ref|ZP_06852286.1| ATP-binding protein [Mycobacteri... 521 5e-146
gi|342858717|ref|ZP_08715372.1| glmZ(sRNA)-inactivating NTPase [... 518 5e-145
gi|118465926|ref|YP_882541.1| hypothetical protein MAV_3359 [Myc... 512 2e-143
gi|336461607|gb|EGO40472.1| putative P-loop-containing kinase [M... 511 4e-143
gi|254775802|ref|ZP_05217318.1| hypothetical protein MaviaA2_141... 511 5e-143
gi|41407245|ref|NP_960081.1| hypothetical protein MAP1147 [Mycob... 510 9e-143
gi|118470722|ref|YP_887395.1| hypothetical protein MSMEG_3079 [M... 483 1e-134
gi|108799363|ref|YP_639560.1| hypothetical protein Mmcs_2396 [My... 481 6e-134
gi|145224296|ref|YP_001134974.1| hypothetical protein Mflv_3714 ... 478 7e-133
gi|120403682|ref|YP_953511.1| hypothetical protein Mvan_2698 [My... 476 3e-132
gi|333990921|ref|YP_004523535.1| hypothetical protein JDM601_228... 474 5e-132
gi|169629867|ref|YP_001703516.1| hypothetical protein MAB_2783c ... 469 2e-130
gi|226366364|ref|YP_002784147.1| hypothetical protein ROP_69550 ... 380 2e-103
gi|296140243|ref|YP_003647486.1| hypothetical protein Tpau_2544 ... 378 6e-103
gi|111024124|ref|YP_707096.1| hypothetical protein RHA1_ro07174 ... 377 9e-103
gi|333919553|ref|YP_004493134.1| hypothetical protein AS9A_1885 ... 374 1e-101
gi|226306513|ref|YP_002766473.1| hypothetical protein RER_30260 ... 372 4e-101
gi|325676726|ref|ZP_08156400.1| ATP-binding protein [Rhodococcus... 369 3e-100
gi|312139599|ref|YP_004006935.1| hypothetical protein REQ_21980 ... 367 1e-99
gi|296393041|ref|YP_003657925.1| hypothetical protein Srot_0612 ... 364 8e-99
gi|302525894|ref|ZP_07278236.1| UPF0042 protein [Streptomyces sp... 362 3e-98
gi|317506093|ref|ZP_07963918.1| P-loop ATPase [Segniliparus rugo... 362 5e-98
gi|331697225|ref|YP_004333464.1| hypothetical protein Psed_3422 ... 360 2e-97
gi|257055609|ref|YP_003133441.1| hypothetical protein Svir_15790... 360 2e-97
gi|256379212|ref|YP_003102872.1| hypothetical protein Amir_5205 ... 359 2e-97
gi|300784685|ref|YP_003764976.1| P-loop ATPase [Amycolatopsis me... 354 1e-95
gi|54025563|ref|YP_119805.1| hypothetical protein nfa35930 [Noca... 352 3e-95
gi|134098709|ref|YP_001104370.1| hypothetical protein SACE_2139 ... 351 6e-95
gi|340526108|gb|AEK41313.1| glmZ(sRNA)-inactivating NTPase [Amyc... 350 2e-94
gi|258652975|ref|YP_003202131.1| hypothetical protein Namu_2797 ... 342 3e-92
gi|117928318|ref|YP_872869.1| hypothetical protein Acel_1111 [Ac... 342 5e-92
gi|324999179|ref|ZP_08120291.1| glmZ(sRNA)-inactivating NTPase [... 340 1e-91
gi|336178124|ref|YP_004583499.1| UPF0042 nucleotide-binding prot... 333 2e-89
gi|111223983|ref|YP_714777.1| hypothetical protein FRAAL4592 [Fr... 332 6e-89
gi|288917082|ref|ZP_06411452.1| conserved hypothetical protein [... 330 2e-88
gi|269126429|ref|YP_003299799.1| hypothetical protein Tcur_2195 ... 329 3e-88
gi|86740339|ref|YP_480739.1| hypothetical protein Francci3_1634 ... 328 6e-88
gi|158313895|ref|YP_001506403.1| hypothetical protein Franean1_2... 327 1e-87
gi|289772327|ref|ZP_06531705.1| UPF0042 protein [Streptomyces li... 323 2e-86
gi|21220437|ref|NP_626216.1| hypothetical protein SCO1952 [Strep... 323 2e-86
gi|254384195|ref|ZP_04999539.1| conserved hypothetical protein [... 323 2e-86
gi|30173503|sp|Q9Z513.2|Y1952_STRCO RecName: Full=UPF0042 nucleo... 323 2e-86
gi|290961317|ref|YP_003492499.1| hypothetical protein SCAB_69661... 323 2e-86
gi|312198681|ref|YP_004018742.1| hypothetical protein FraEuI1c_4... 323 3e-86
>gi|15608559|ref|NP_215937.1| hypothetical protein Rv1421 [Mycobacterium tuberculosis H37Rv]
gi|15840878|ref|NP_335915.1| hypothetical protein MT1464 [Mycobacterium tuberculosis CDC1551]
gi|31792615|ref|NP_855108.1| hypothetical protein Mb1456 [Mycobacterium bovis AF2122/97]
83 more sequence titles
Length=301
Score = 606 bits (1563), Expect = 1e-171, Method: Compositional matrix adjust.
Identities = 301/301 (100%), Positives = 301/301 (100%), Gaps = 0/301 (0%)
Query 1 MMNHARGVENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFG 60
MMNHARGVENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFG
Sbjct 1 MMNHARGVENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFG 60
Query 61 LAAGSRITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRR 120
LAAGSRITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRR
Sbjct 61 LAAGSRITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRR 120
Query 121 SHPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSV 180
SHPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSV
Sbjct 121 SHPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSV 180
Query 181 TVESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESY 240
TVESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESY
Sbjct 181 TVESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESY 240
Query 241 HRLLSLVVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGR 300
HRLLSLVVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGR
Sbjct 241 HRLLSLVVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGR 300
Query 301 E 301
E
Sbjct 301 E 301
>gi|289554789|ref|ZP_06443999.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289439421|gb|EFD21914.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
Length=300
Score = 604 bits (1557), Expect = 6e-171, Method: Compositional matrix adjust.
Identities = 300/300 (100%), Positives = 300/300 (100%), Gaps = 0/300 (0%)
Query 2 MNHARGVENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGL 61
MNHARGVENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGL
Sbjct 1 MNHARGVENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGL 60
Query 62 AAGSRITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRS 121
AAGSRITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRS
Sbjct 61 AAGSRITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRS 120
Query 122 HPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVT 181
HPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVT
Sbjct 121 HPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVT 180
Query 182 VESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYH 241
VESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYH
Sbjct 181 VESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYH 240
Query 242 RLLSLVVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RLLSLVVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE
Sbjct 241 RLLSLVVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 300
>gi|240171791|ref|ZP_04750450.1| hypothetical protein MkanA1_20925 [Mycobacterium kansasii ATCC
12478]
Length=307
Score = 533 bits (1372), Expect = 2e-149, Method: Compositional matrix adjust.
Identities = 264/285 (93%), Positives = 273/285 (96%), Gaps = 0/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV
Sbjct 23 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 82
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
RSRGFTGDLD VRNELATR ITPRVVFMEASDD LVRRYEQNRRSHPLQG+QTLAEGIAA
Sbjct 83 RSRGFTGDLDEVRNELATRNITPRVVFMEASDDMLVRRYEQNRRSHPLQGQQTLAEGIAA 142
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ER+MLAPVRA ADLIIDTSTLSV GLR+SIERAFG DGGATTSVTVESFGFKYGLPMDAD
Sbjct 143 ERKMLAPVRANADLIIDTSTLSVRGLRESIERAFGSDGGATTSVTVESFGFKYGLPMDAD 202
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVL +PGAAEFL +YHRLLSLVV+GYRREGK
Sbjct 203 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLEQPGAAEFLGTYHRLLSLVVEGYRREGK 262
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RYMT+A+GCTGGKHRSVAIAEALM LL SD +LSVR LHRDLGRE
Sbjct 263 RYMTVAVGCTGGKHRSVAIAEALMRLLGSDSRLSVRVLHRDLGRE 307
>gi|118617430|ref|YP_905762.1| hypothetical protein MUL_1815 [Mycobacterium ulcerans Agy99]
gi|183982241|ref|YP_001850532.1| hypothetical protein MMAR_2228 [Mycobacterium marinum M]
gi|226695981|sp|A0PPM2.1|Y1815_MYCUA RecName: Full=UPF0042 nucleotide-binding protein MUL_1815
gi|226701226|sp|B2HP73.1|Y2228_MYCMM RecName: Full=UPF0042 nucleotide-binding protein MMAR_2228
gi|118569540|gb|ABL04291.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183175567|gb|ACC40677.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=306
Score = 526 bits (1356), Expect = 1e-147, Method: Compositional matrix adjust.
Identities = 260/286 (91%), Positives = 271/286 (95%), Gaps = 0/286 (0%)
Query 16 GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMD 75
GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMD
Sbjct 21 GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMD 80
Query 76 VRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIA 135
VRSRGFTGDLDSVRNELATR ITPRVVFMEASDD LVRRYEQNRRSHPLQG TLAEGIA
Sbjct 81 VRSRGFTGDLDSVRNELATRNITPRVVFMEASDDMLVRRYEQNRRSHPLQGGHTLAEGIA 140
Query 136 AERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDA 195
AER+ML PVRATADLIIDTSTLSV GLR++IERAFGGD A TSVTVESFGFKYGLPMDA
Sbjct 141 AERKMLEPVRATADLIIDTSTLSVRGLRENIERAFGGDAAAITSVTVESFGFKYGLPMDA 200
Query 196 DMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREG 255
DMVMDVRFLPNPHWVDELRPLTGQH AV DYVL RPGA+EFL++YH LLSLVV+GYRREG
Sbjct 201 DMVMDVRFLPNPHWVDELRPLTGQHQAVSDYVLGRPGASEFLQTYHELLSLVVEGYRREG 260
Query 256 KRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
KRYMT+AIGCTGGKHRSVAIAEAL+GLLRS+ +LSVR LHRDLGRE
Sbjct 261 KRYMTVAIGCTGGKHRSVAIAEALVGLLRSNSRLSVRVLHRDLGRE 306
>gi|15827214|ref|NP_301477.1| hypothetical protein ML0563 [Mycobacterium leprae TN]
gi|221229692|ref|YP_002503108.1| hypothetical protein MLBr_00563 [Mycobacterium leprae Br4923]
gi|30173479|sp|Q9CCP0.1|Y563_MYCLE RecName: Full=UPF0042 nucleotide-binding protein ML0563
gi|254806501|sp|B8ZUN6.1|Y563_MYCLB RecName: Full=UPF0042 nucleotide-binding protein MLBr00563
gi|13092762|emb|CAC30071.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932799|emb|CAR70656.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=298
Score = 525 bits (1351), Expect = 4e-147, Method: Compositional matrix adjust.
Identities = 263/285 (93%), Positives = 269/285 (95%), Gaps = 0/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLIT MVDFGLAAGSRITQLAVVMDV
Sbjct 14 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITWMVDFGLAAGSRITQLAVVMDV 73
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
RSRGFTGDLDSVR ELATR I PRVVFMEASDD LVRRYEQNRRSHPLQGEQTLAEGIAA
Sbjct 74 RSRGFTGDLDSVRRELATRNIIPRVVFMEASDDMLVRRYEQNRRSHPLQGEQTLAEGIAA 133
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ERRMLAPVRATADLIIDTS LSV GLR+SIERAFGGD ATTSVTVESFGFKYGLPMDAD
Sbjct 134 ERRMLAPVRATADLIIDTSALSVPGLRESIERAFGGDASATTSVTVESFGFKYGLPMDAD 193
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
+VMDVRFLPNPHWVDELR LTGQH AVRDYVL +PGAAEFL +Y RLLSLVVDGYRREGK
Sbjct 194 IVMDVRFLPNPHWVDELRSLTGQHSAVRDYVLGQPGAAEFLRTYRRLLSLVVDGYRREGK 253
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RYMT+AIGCTGGKHRSVAIAEALMGLL+SD QLSVR LHRDLGRE
Sbjct 254 RYMTVAIGCTGGKHRSVAIAEALMGLLQSDLQLSVRVLHRDLGRE 298
>gi|254822012|ref|ZP_05227013.1| hypothetical protein MintA_18912 [Mycobacterium intracellulare
ATCC 13950]
Length=303
Score = 521 bits (1342), Expect = 5e-146, Method: Compositional matrix adjust.
Identities = 259/286 (91%), Positives = 268/286 (94%), Gaps = 0/286 (0%)
Query 16 GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMD 75
GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVD G+ AGSRITQLAVVMD
Sbjct 18 GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDLGMDAGSRITQLAVVMD 77
Query 76 VRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIA 135
VRSRGFTGDLDSVR ELATR I PRVVFMEASDD LVRRYEQNRRSHPLQG+QTLAEGIA
Sbjct 78 VRSRGFTGDLDSVRTELATRNIAPRVVFMEASDDMLVRRYEQNRRSHPLQGDQTLAEGIA 137
Query 136 AERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDA 195
AERRMLA VRATADLIIDTSTLSV GLR++IERAFG D GATTSVTVESFGFKYGLPMDA
Sbjct 138 AERRMLASVRATADLIIDTSTLSVRGLRETIERAFGNDAGATTSVTVESFGFKYGLPMDA 197
Query 196 DMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREG 255
DMVMDVRFLPNPHWVDELRP TGQ PAVRDYVL +PGAAEFL++YHRLLSLVVDGYRREG
Sbjct 198 DMVMDVRFLPNPHWVDELRPRTGQDPAVRDYVLSQPGAAEFLDAYHRLLSLVVDGYRREG 257
Query 256 KRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
KRYMT+AIGCTGGKHRSVAIAE LM LL +D QLSVR LHRDLGRE
Sbjct 258 KRYMTVAIGCTGGKHRSVAIAEQLMQLLNADHQLSVRVLHRDLGRE 303
>gi|296170711|ref|ZP_06852286.1| ATP-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894700|gb|EFG74434.1| ATP-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=308
Score = 521 bits (1342), Expect = 5e-146, Method: Compositional matrix adjust.
Identities = 264/304 (87%), Positives = 277/304 (92%), Gaps = 4/304 (1%)
Query 2 MNHARGVENRSEGG-GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFG 60
+ R ++ R EGG GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFG
Sbjct 5 LAEGRPMDARPEGGAGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFG 64
Query 61 LAAGSRITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRR 120
LAAGSRITQLAVVMDVRSRGFTGDLD VR ELATR I PRVVFMEASDD LVRRYEQNRR
Sbjct 65 LAAGSRITQLAVVMDVRSRGFTGDLDEVRTELATRNIRPRVVFMEASDDMLVRRYEQNRR 124
Query 121 SHPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSV 180
SHPLQG+QTLAEGIAAERRMLAPVRATADLIIDTSTLSV GLR+SIERAFGGD + SV
Sbjct 125 SHPLQGDQTLAEGIAAERRMLAPVRATADLIIDTSTLSVRGLRESIERAFGGDASPSISV 184
Query 181 TVESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESY 240
TVESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQ PAV +YVL +PGAA+FL++Y
Sbjct 185 TVESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQDPAVSEYVLSQPGAADFLDAY 244
Query 241 HRLLSLVVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRS---DQQLSVRALHRD 297
HRLLSLVVDGYRREGKRYMT+AIGCTGGKHRSVAIAEALM LL+ D QLSVR LHRD
Sbjct 245 HRLLSLVVDGYRREGKRYMTVAIGCTGGKHRSVAIAEALMRLLKDQKFDAQLSVRVLHRD 304
Query 298 LGRE 301
LGRE
Sbjct 305 LGRE 308
>gi|342858717|ref|ZP_08715372.1| glmZ(sRNA)-inactivating NTPase [Mycobacterium colombiense CECT
3035]
gi|342134421|gb|EGT87601.1| glmZ(sRNA)-inactivating NTPase [Mycobacterium colombiense CECT
3035]
Length=306
Score = 518 bits (1333), Expect = 5e-145, Method: Compositional matrix adjust.
Identities = 260/290 (90%), Positives = 269/290 (93%), Gaps = 3/290 (1%)
Query 15 GGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVM 74
GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVM
Sbjct 17 AGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVM 76
Query 75 DVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGI 134
DVRSRGFTGDLDSVR ELATR I PRVVFMEASDD LVRRYEQNRRSHPLQG+QTLAEGI
Sbjct 77 DVRSRGFTGDLDSVRTELATRNIAPRVVFMEASDDMLVRRYEQNRRSHPLQGDQTLAEGI 136
Query 135 AAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMD 194
AAERRMLA VRATADLIIDTSTLSV GLR++IERAF G ATTSVTVESFGFKYGLPMD
Sbjct 137 AAERRMLASVRATADLIIDTSTLSVRGLRETIERAFAGVASATTSVTVESFGFKYGLPMD 196
Query 195 ADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRRE 254
ADMVMDVRFLPNPHWVDELRP TGQ PAVRDYVL +PGAAEFL++YHRLLSLVVDGYRRE
Sbjct 197 ADMVMDVRFLPNPHWVDELRPRTGQDPAVRDYVLSQPGAAEFLDAYHRLLSLVVDGYRRE 256
Query 255 GKRYMTIAIGCTGGKHRSVAIAEALMGLL---RSDQQLSVRALHRDLGRE 301
GKRYMT+AIGCTGGKHRSVAIAEALM LL + + QLSVR LHRDLGRE
Sbjct 257 GKRYMTVAIGCTGGKHRSVAIAEALMQLLNAQKGEAQLSVRVLHRDLGRE 306
>gi|118465926|ref|YP_882541.1| hypothetical protein MAV_3359 [Mycobacterium avium 104]
gi|257096902|sp|A0QI03.1|Y3359_MYCA1 RecName: Full=UPF0042 nucleotide-binding protein MAV_3359
gi|118167213|gb|ABK68110.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=298
Score = 512 bits (1319), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 258/292 (89%), Positives = 268/292 (92%), Gaps = 3/292 (1%)
Query 13 EGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAV 72
G GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVD G+ AGSRITQLAV
Sbjct 7 NGAGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDLGMDAGSRITQLAV 66
Query 73 VMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAE 132
VMDVRSRGFTGDLDSVR ELATR I PRVVFMEASDD LVRRYEQNRRSHPLQG+QTLAE
Sbjct 67 VMDVRSRGFTGDLDSVRTELATRNIAPRVVFMEASDDMLVRRYEQNRRSHPLQGDQTLAE 126
Query 133 GIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLP 192
GIAAERRMLAPVRATADLIIDTSTLSV LR++IERAFGG AT SVTVESFGFKYGLP
Sbjct 127 GIAAERRMLAPVRATADLIIDTSTLSVRALRETIERAFGGGASATISVTVESFGFKYGLP 186
Query 193 MDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYR 252
MDADMVMDVRFLPNPHWVDELRP TGQ PAVRDYVL +PGAAEFL++YHRLLSLVVDGYR
Sbjct 187 MDADMVMDVRFLPNPHWVDELRPRTGQDPAVRDYVLGQPGAAEFLDAYHRLLSLVVDGYR 246
Query 253 REGKRYMTIAIGCTGGKHRSVAIAEALMGLLRS---DQQLSVRALHRDLGRE 301
REGKRYMTIAIGCTGGKHRSVAIAEALM L++ + QLSVR LHRDLGRE
Sbjct 247 REGKRYMTIAIGCTGGKHRSVAIAEALMQRLQAQHGEAQLSVRVLHRDLGRE 298
>gi|336461607|gb|EGO40472.1| putative P-loop-containing kinase [Mycobacterium avium subsp.
paratuberculosis S397]
Length=298
Score = 511 bits (1317), Expect = 4e-143, Method: Compositional matrix adjust.
Identities = 257/292 (89%), Positives = 268/292 (92%), Gaps = 3/292 (1%)
Query 13 EGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAV 72
G GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVD G+ AGSRITQLAV
Sbjct 7 NGAGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDLGMDAGSRITQLAV 66
Query 73 VMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAE 132
VMDVRSRGFTGDLDSVR ELATR I PRVVFMEASDD LVRRYEQNRRSHPLQG+QTLAE
Sbjct 67 VMDVRSRGFTGDLDSVRTELATRNIAPRVVFMEASDDMLVRRYEQNRRSHPLQGDQTLAE 126
Query 133 GIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLP 192
GIAAERRMLAPVRATADLIIDTSTLSV LR++IERAFGG AT SVTVESFGFKYGLP
Sbjct 127 GIAAERRMLAPVRATADLIIDTSTLSVRALRETIERAFGGGANATISVTVESFGFKYGLP 186
Query 193 MDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYR 252
MDADMVMDVRFLPNPHWVDELRP TGQ PAVRDYVL +PGAAEFL++YHRLLSLVVDGYR
Sbjct 187 MDADMVMDVRFLPNPHWVDELRPRTGQDPAVRDYVLGQPGAAEFLDAYHRLLSLVVDGYR 246
Query 253 REGKRYMTIAIGCTGGKHRSVAIAEALMGLLRS---DQQLSVRALHRDLGRE 301
REGKRYMT+AIGCTGGKHRSVAIAEALM L++ + QLSVR LHRDLGRE
Sbjct 247 REGKRYMTVAIGCTGGKHRSVAIAEALMQRLQAQHGEAQLSVRVLHRDLGRE 298
>gi|254775802|ref|ZP_05217318.1| hypothetical protein MaviaA2_14190 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=298
Score = 511 bits (1316), Expect = 5e-143, Method: Compositional matrix adjust.
Identities = 257/292 (89%), Positives = 268/292 (92%), Gaps = 3/292 (1%)
Query 13 EGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAV 72
G GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVD G+ AGSRITQLAV
Sbjct 7 NGAGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDLGMDAGSRITQLAV 66
Query 73 VMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAE 132
VMDVRSRGFTGDLDSVR ELATR I PRVVFMEASDD LVRRYEQNRRSHPLQG+QTLAE
Sbjct 67 VMDVRSRGFTGDLDSVRTELATRNIAPRVVFMEASDDMLVRRYEQNRRSHPLQGDQTLAE 126
Query 133 GIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLP 192
GIAAERRMLAPVRATADLIIDTSTLSV LR++IERAFGG AT SVTVESFGFKYGLP
Sbjct 127 GIAAERRMLAPVRATADLIIDTSTLSVRALRETIERAFGGGASATISVTVESFGFKYGLP 186
Query 193 MDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYR 252
MDADMVMDVRFLPNPHWVDELRP TGQ PAVRDYVL +PGAAEFL++YHRLLSLVVDGYR
Sbjct 187 MDADMVMDVRFLPNPHWVDELRPRTGQDPAVRDYVLGQPGAAEFLDAYHRLLSLVVDGYR 246
Query 253 REGKRYMTIAIGCTGGKHRSVAIAEALMGLLRS---DQQLSVRALHRDLGRE 301
REGKRYMT+AIGCTGGKHRSVAIAEALM L++ + QLSVR LHRDLGRE
Sbjct 247 REGKRYMTVAIGCTGGKHRSVAIAEALMQRLQAQHGEAQLSVRVLHRDLGRE 298
>gi|41407245|ref|NP_960081.1| hypothetical protein MAP1147 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|66773999|sp|Q741E4.1|Y1147_MYCPA RecName: Full=UPF0042 nucleotide-binding protein MAP_1147
gi|41395596|gb|AAS03464.1| hypothetical protein MAP_1147 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=310
Score = 510 bits (1314), Expect = 9e-143, Method: Compositional matrix adjust.
Identities = 257/292 (89%), Positives = 268/292 (92%), Gaps = 3/292 (1%)
Query 13 EGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAV 72
G GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVD G+ AGSRITQLAV
Sbjct 19 NGAGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDLGMDAGSRITQLAV 78
Query 73 VMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAE 132
VMDVRSRGFTGDLDSVR ELATR I PRVVFMEASDD LVRRYEQNRRSHPLQG+QTLAE
Sbjct 79 VMDVRSRGFTGDLDSVRTELATRNIAPRVVFMEASDDMLVRRYEQNRRSHPLQGDQTLAE 138
Query 133 GIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLP 192
GIAAERRMLAPVRATADLIIDTSTLSV LR++IERAFGG AT SVTVESFGFKYGLP
Sbjct 139 GIAAERRMLAPVRATADLIIDTSTLSVRALRETIERAFGGGANATISVTVESFGFKYGLP 198
Query 193 MDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYR 252
MDADMVMDVRFLPNPHWVDELRP TGQ PAVRDYVL +PGAAEFL++YHRLLSLVVDGYR
Sbjct 199 MDADMVMDVRFLPNPHWVDELRPRTGQDPAVRDYVLGQPGAAEFLDAYHRLLSLVVDGYR 258
Query 253 REGKRYMTIAIGCTGGKHRSVAIAEALMGLLRS---DQQLSVRALHRDLGRE 301
REGKRYMT+AIGCTGGKHRSVAIAEALM L++ + QLSVR LHRDLGRE
Sbjct 259 REGKRYMTVAIGCTGGKHRSVAIAEALMQRLQAQHGEAQLSVRVLHRDLGRE 310
>gi|118470722|ref|YP_887395.1| hypothetical protein MSMEG_3079 [Mycobacterium smegmatis str.
MC2 155]
gi|257096892|sp|A0QWV7.1|Y3079_MYCS2 RecName: Full=UPF0042 nucleotide-binding protein MSMEG_3079
gi|118172009|gb|ABK72905.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=291
Score = 483 bits (1244), Expect = 1e-134, Method: Compositional matrix adjust.
Identities = 240/286 (84%), Positives = 256/286 (90%), Gaps = 0/286 (0%)
Query 16 GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMD 75
GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPP+LI RMVD GLAAGSRITQLAVVMD
Sbjct 6 GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPELIARMVDLGLAAGSRITQLAVVMD 65
Query 76 VRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIA 135
VRS+GFTGDLD VRNELATR I PRV+FMEASDD LVRRYEQNRRSHPLQG QTLAEGIA
Sbjct 66 VRSKGFTGDLDWVRNELATRNIAPRVLFMEASDDILVRRYEQNRRSHPLQGTQTLAEGIA 125
Query 136 AERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDA 195
AER MLAPVRA ADL+IDTSTL V LR+SIERAFGG+ A T+VTVESFG+KYGLPMDA
Sbjct 126 AERAMLAPVRAAADLVIDTSTLPVPALRESIERAFGGETVAYTNVTVESFGYKYGLPMDA 185
Query 196 DMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREG 255
D VMDVRFLPNPHWVDELRP +GQHP VRDYVL +PGA EFL++YHRLL +V+DGYRREG
Sbjct 186 DTVMDVRFLPNPHWVDELRPHSGQHPDVRDYVLGQPGALEFLDTYHRLLDVVIDGYRREG 245
Query 256 KRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
KRYMT+AIGCTGGKHRSVAIAEAL L L+VR LHRDLGRE
Sbjct 246 KRYMTVAIGCTGGKHRSVAIAEALAERLEGGDGLTVRVLHRDLGRE 291
>gi|108799363|ref|YP_639560.1| hypothetical protein Mmcs_2396 [Mycobacterium sp. MCS]
gi|119868479|ref|YP_938431.1| hypothetical protein Mkms_2443 [Mycobacterium sp. KMS]
gi|126435021|ref|YP_001070712.1| hypothetical protein Mjls_2437 [Mycobacterium sp. JLS]
6 more sequence titles
Length=305
Score = 481 bits (1238), Expect = 6e-134, Method: Compositional matrix adjust.
Identities = 240/301 (80%), Positives = 265/301 (89%), Gaps = 1/301 (0%)
Query 1 MMNHARGVENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFG 60
M RG + E G IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPP+LI RMV+ G
Sbjct 6 MSEQLRGDVDHPESG-IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPELIARMVELG 64
Query 61 LAAGSRITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRR 120
LAAGSRITQLAVVMDVRSRGFTGDLD VR +LATR ITPRV+F+EASDD LVRRYEQNRR
Sbjct 65 LAAGSRITQLAVVMDVRSRGFTGDLDWVRRDLATRNITPRVLFLEASDDILVRRYEQNRR 124
Query 121 SHPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSV 180
SHPLQG+QTLAEGIA ER +LAPVRA+ADL+IDTS LSV LR+S+ERAFGG+ A TS
Sbjct 125 SHPLQGDQTLAEGIARERALLAPVRASADLVIDTSKLSVHALRESVERAFGGEVVAETSA 184
Query 181 TVESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESY 240
TVESFG+KYGLPMDAD+VMDVRFLPNPHWVD LRP TGQHP VRDYVL +PGA EFL++Y
Sbjct 185 TVESFGYKYGLPMDADIVMDVRFLPNPHWVDALRPHTGQHPDVRDYVLGQPGAEEFLDTY 244
Query 241 HRLLSLVVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGR 300
HRLL++V+DGYRREGKRYMT+AIGCTGGKHRSVAIAEAL G L+ +L+VR LHRDLGR
Sbjct 245 HRLLNVVIDGYRREGKRYMTVAIGCTGGKHRSVAIAEALAGRLQGGDELTVRVLHRDLGR 304
Query 301 E 301
E
Sbjct 305 E 305
>gi|145224296|ref|YP_001134974.1| hypothetical protein Mflv_3714 [Mycobacterium gilvum PYR-GCK]
gi|315444629|ref|YP_004077508.1| P-loop-containing kinase [Mycobacterium sp. Spyr1]
gi|257096909|sp|A4TC20.1|Y3714_MYCGI RecName: Full=UPF0042 nucleotide-binding protein Mflv_3714
gi|145216782|gb|ABP46186.1| Uncharacterized P-loop ATPase protein UPF0042 [Mycobacterium
gilvum PYR-GCK]
gi|315262932|gb|ADT99673.1| predicted P-loop-containing kinase [Mycobacterium sp. Spyr1]
Length=327
Score = 478 bits (1229), Expect = 7e-133, Method: Compositional matrix adjust.
Identities = 237/295 (81%), Positives = 260/295 (89%), Gaps = 1/295 (0%)
Query 7 GVENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSR 66
G++N + G GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPP+LI +MVD GLAAGSR
Sbjct 34 GIDNEN-GNGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPELIAQMVDLGLAAGSR 92
Query 67 ITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQG 126
ITQLA VMDVRSRGFTGDLD VR+ELATR I PRVVF+EASDD LVRRYEQNRRSHPLQG
Sbjct 93 ITQLAAVMDVRSRGFTGDLDWVRSELATRNIVPRVVFLEASDDILVRRYEQNRRSHPLQG 152
Query 127 EQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFG 186
QTLAEGIAAER MLAPVRA+ADL+IDTS LSV GLRDSIERAF + A T+VTVESFG
Sbjct 153 NQTLAEGIAAERAMLAPVRASADLVIDTSALSVHGLRDSIERAFAAETVAHTNVTVESFG 212
Query 187 FKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSL 246
+KYGLPMDAD VMDVRFLPNPHW+D LRP TGQ+ VRDYVL +PGA EFL+SYH+LL++
Sbjct 213 YKYGLPMDADTVMDVRFLPNPHWIDRLRPHTGQNADVRDYVLGQPGADEFLDSYHQLLNV 272
Query 247 VVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
V+DGYRREGKRYMT+AIGCTGGKHRSVA+AEAL L L+VR LHRDLGRE
Sbjct 273 VIDGYRREGKRYMTVAIGCTGGKHRSVAMAEALAARLAGSDALTVRVLHRDLGRE 327
>gi|120403682|ref|YP_953511.1| hypothetical protein Mvan_2698 [Mycobacterium vanbaalenii PYR-1]
gi|257096880|sp|A1T8K5.1|Y2698_MYCVP RecName: Full=UPF0042 nucleotide-binding protein Mvan_2698
gi|119956500|gb|ABM13505.1| Uncharacterized P-loop ATPase protein UPF0042 [Mycobacterium
vanbaalenii PYR-1]
Length=319
Score = 476 bits (1224), Expect = 3e-132, Method: Compositional matrix adjust.
Identities = 237/286 (83%), Positives = 256/286 (90%), Gaps = 1/286 (0%)
Query 16 GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMD 75
GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPP+LI +MVD GLAAGSRITQLAVVMD
Sbjct 35 GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPELIAQMVDLGLAAGSRITQLAVVMD 94
Query 76 VRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIA 135
VRSRGFTGDLD VR ELATR I PRV+F+EASDD LVRRYEQNRRSHPLQG QTLAEGIA
Sbjct 95 VRSRGFTGDLDWVRTELATRNIVPRVLFLEASDDILVRRYEQNRRSHPLQGNQTLAEGIA 154
Query 136 AERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDA 195
AER MLAPVRA+ADL+IDTS+LSV LRDSIERAF G+ A T+VTVESFG+KYGLPMDA
Sbjct 155 AERTMLAPVRASADLVIDTSSLSVHALRDSIERAFAGETVAHTNVTVESFGYKYGLPMDA 214
Query 196 DMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREG 255
D VMDVRFLPNPHWVD LRP TGQH VRDYVL +PGA EFL+SYH+LL +V+DGYRREG
Sbjct 215 DTVMDVRFLPNPHWVDRLRPNTGQHHEVRDYVLGQPGALEFLDSYHQLLDVVIDGYRREG 274
Query 256 KRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
KRYMT+AIGCTGGKHRSVA+AEAL L+ D L+VR LHRDLGRE
Sbjct 275 KRYMTVAIGCTGGKHRSVAMAEALAERLQ-DSDLTVRVLHRDLGRE 319
>gi|333990921|ref|YP_004523535.1| hypothetical protein JDM601_2281 [Mycobacterium sp. JDM601]
gi|333486889|gb|AEF36281.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=311
Score = 474 bits (1221), Expect = 5e-132, Method: Compositional matrix adjust.
Identities = 243/300 (81%), Positives = 258/300 (86%), Gaps = 4/300 (1%)
Query 6 RGVENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGS 65
R V +G GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPP+LI RMVD GLAAGS
Sbjct 12 RDVGGPGDGAGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPELIARMVDLGLAAGS 71
Query 66 RITQLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQ 125
RITQLAVVMDVRS GFTGDLDSVR ELATR I PRV+FMEA DD L+RRYE NRRSHPLQ
Sbjct 72 RITQLAVVMDVRSAGFTGDLDSVRTELATRGINPRVLFMEAGDDVLIRRYEHNRRSHPLQ 131
Query 126 GEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDG-GATTSVTVES 184
G+QTL EGI AER MLAPVRA ADL+IDTS LSV LR+SIE FGGD A TSVTVES
Sbjct 132 GQQTLTEGITAERVMLAPVRAVADLVIDTSVLSVRELRESIEEMFGGDAVSAPTSVTVES 191
Query 185 FGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLL 244
FG+KYGLPMDADMVMDVRFLPNPHWVDELRP TGQHPAVRDYVL + GA EFL++YHRLL
Sbjct 192 FGYKYGLPMDADMVMDVRFLPNPHWVDELRPHTGQHPAVRDYVLSQRGADEFLDAYHRLL 251
Query 245 SLVVDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSD---QQLSVRALHRDLGRE 301
SLVV GYRREGKRYMT+AIGCTGGKHRSVAIAEAL L ++ +LSVR LHRDLGRE
Sbjct 252 SLVVGGYRREGKRYMTVAIGCTGGKHRSVAIAEALALRLDTEDALDELSVRVLHRDLGRE 311
>gi|169629867|ref|YP_001703516.1| hypothetical protein MAB_2783c [Mycobacterium abscessus ATCC
19977]
gi|257096885|sp|B1MC91.1|Y2783_MYCA9 RecName: Full=UPF0042 nucleotide-binding protein MAB_2783c
gi|169241834|emb|CAM62862.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=301
Score = 469 bits (1207), Expect = 2e-130, Method: Compositional matrix adjust.
Identities = 229/292 (79%), Positives = 255/292 (88%), Gaps = 0/292 (0%)
Query 10 NRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQ 69
+ + IDVVLVTGLSGAGRGT AKVLEDLGWYVADNLPP+LITRMVD GLAAGSRITQ
Sbjct 10 SETANADIDVVLVTGLSGAGRGTTAKVLEDLGWYVADNLPPELITRMVDLGLAAGSRITQ 69
Query 70 LAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQT 129
LAVVMDVRSRGFTGDL+SVR +LATR I+PRV+F+EASD++LVRRYE NRRSHPLQG QT
Sbjct 70 LAVVMDVRSRGFTGDLESVRADLATRGISPRVLFLEASDESLVRRYENNRRSHPLQGGQT 129
Query 130 LAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKY 189
LAEGIAAER +L+ +RA+ADL+IDTS+L V LR +IERAF + A SVTVESFGFKY
Sbjct 130 LAEGIAAERALLSSIRASADLVIDTSSLPVPALRAAIERAFSSESVAHISVTVESFGFKY 189
Query 190 GLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVD 249
GLPMDADMV+DVRFLPNPHWVDELRP TGQHP+V YVL +PGA EFL++YHRLL+LV+D
Sbjct 190 GLPMDADMVVDVRFLPNPHWVDELRPHTGQHPSVSHYVLSQPGADEFLDTYHRLLNLVID 249
Query 250 GYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
GYRREGKRYMTIA+GCTGGKHRSVAI EAL L D LSVR LHRDLGRE
Sbjct 250 GYRREGKRYMTIAVGCTGGKHRSVAITEALAASLAPDDDLSVRVLHRDLGRE 301
>gi|226366364|ref|YP_002784147.1| hypothetical protein ROP_69550 [Rhodococcus opacus B4]
gi|257096932|sp|C1B4L3.1|Y6955_RHOOB RecName: Full=UPF0042 nucleotide-binding protein ROP_69550
gi|226244854|dbj|BAH55202.1| hypothetical protein [Rhodococcus opacus B4]
Length=304
Score = 380 bits (975), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 191/288 (67%), Positives = 226/288 (79%), Gaps = 3/288 (1%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
+D +LVTGLSGAG TAAKVLEDLGWYVADNLPP+LI+RMVD L + SR+ +LAVV+DV
Sbjct 17 MDFLLVTGLSGAGLQTAAKVLEDLGWYVADNLPPELISRMVDLSLESDSRLERLAVVIDV 76
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQG---EQTLAEG 133
RSR FTGDL V EL ++ + RV++++ASD+ LVRR+EQ RRSHPL G E TL+EG
Sbjct 77 RSRLFTGDLGWVLTELESKPVHTRVLYLDASDEVLVRRFEQVRRSHPLSGGGAEGTLSEG 136
Query 134 IAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPM 193
IAAER LA V+A ADL+IDTS+L+ LR IE AFG T VTV+SFGFKYGLPM
Sbjct 137 IAAERDQLAKVKAAADLVIDTSSLAAHQLRQKIEDAFGDAENRTMQVTVQSFGFKYGLPM 196
Query 194 DADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRR 253
DAD+V DVRFLPNPHW+ ELRP TGQ VRDYVL + GA ++L +YH LL L + GYRR
Sbjct 197 DADLVCDVRFLPNPHWIPELRPHTGQSADVRDYVLSQDGAEDYLATYHHLLDLTITGYRR 256
Query 254 EGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
EGKRYMTIA+GCTGGKHRSVA++EAL G L D L+VR +HRDLGRE
Sbjct 257 EGKRYMTIAVGCTGGKHRSVAMSEALAGRLGKDSGLNVRVVHRDLGRE 304
>gi|296140243|ref|YP_003647486.1| hypothetical protein Tpau_2544 [Tsukamurella paurometabola DSM
20162]
gi|296028377|gb|ADG79147.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=309
Score = 378 bits (971), Expect = 6e-103, Method: Compositional matrix adjust.
Identities = 191/293 (66%), Positives = 227/293 (78%), Gaps = 1/293 (0%)
Query 9 ENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRIT 68
E+RS+G +DV+LVTGLSGAGRGTAAKVLEDLGWYVADNLPP LI +MVD LA SRI
Sbjct 18 EHRSDGP-MDVLLVTGLSGAGRGTAAKVLEDLGWYVADNLPPALIGKMVDISLADESRIH 76
Query 69 QLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQ 128
+L +V DVRSR FTGD +R ELA + I PRV+F++ASD TL+RR+EQ RR HPLQG
Sbjct 77 RLCIVTDVRSRTFTGDFADIRRELAEKEIEPRVLFLDASDQTLIRRFEQVRRKHPLQGSG 136
Query 129 TLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFK 188
TLAEGIAAER +L P+R+TADL++DTS LSV LR++IE AF T +VTVESFGFK
Sbjct 137 TLAEGIAAERHILQPIRSTADLVVDTSNLSVARLRENIENAFRTLRSGTVTVTVESFGFK 196
Query 189 YGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVV 248
G+ +DADMVMDVRFLPNP W+ ELRPL G V DYVL +PGA+EFL++Y L+ V+
Sbjct 197 NGILLDADMVMDVRFLPNPFWIPELRPLNGLTDEVSDYVLGQPGASEFLDTYAELIEPVL 256
Query 249 DGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
DGYRREGK Y+TI +GCTGGKHRSVA+ E L+ L + VRA HRDLG E
Sbjct 257 DGYRREGKTYLTIGVGCTGGKHRSVAMTEELVHRLSDRPGMEVRAAHRDLGLE 309
>gi|111024124|ref|YP_707096.1| hypothetical protein RHA1_ro07174 [Rhodococcus jostii RHA1]
gi|118574396|sp|Q0S0J8.1|Y7174_RHOSR RecName: Full=UPF0042 nucleotide-binding protein RHA1_ro07174
gi|110823654|gb|ABG98938.1| possible P-loop ATPase family protein [Rhodococcus jostii RHA1]
Length=304
Score = 377 bits (969), Expect = 9e-103, Method: Compositional matrix adjust.
Identities = 190/288 (66%), Positives = 225/288 (79%), Gaps = 3/288 (1%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
+D +LVTGLSGAG TAAKVLEDLGWYVADNLPP+LI+RMVD L + SR+ +LAVV+DV
Sbjct 17 MDFLLVTGLSGAGLQTAAKVLEDLGWYVADNLPPELISRMVDLSLESDSRLERLAVVIDV 76
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQG---EQTLAEG 133
RSR FTGDL V EL ++ + RV++++ASD+ LVRR+EQ RRSHPL G E TL+EG
Sbjct 77 RSRLFTGDLGWVLTELESKPVHTRVLYLDASDEVLVRRFEQVRRSHPLSGGGAEGTLSEG 136
Query 134 IAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPM 193
IAAER LA V+A ADL+IDTS+L+ LR IE AFG T VTV+SFGFKYGLPM
Sbjct 137 IAAERDQLAKVKAAADLVIDTSSLAAHQLRQKIEDAFGDAENRTMQVTVQSFGFKYGLPM 196
Query 194 DADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRR 253
DAD+V DVRFLPNPHW+ ELRP TGQ VRDYVL + GA ++L +YH LL L + GYRR
Sbjct 197 DADLVCDVRFLPNPHWIPELRPHTGQSEDVRDYVLSQDGAEDYLATYHHLLDLTIAGYRR 256
Query 254 EGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
EGKRYMTIA+GCTGGKHRSVA++EAL L D L+VR +HRDLGRE
Sbjct 257 EGKRYMTIAVGCTGGKHRSVAMSEALASRLGKDSGLNVRVVHRDLGRE 304
>gi|333919553|ref|YP_004493134.1| hypothetical protein AS9A_1885 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481774|gb|AEF40334.1| hypothetical protein AS9A_1885 [Amycolicicoccus subflavus DQS3-9A1]
Length=294
Score = 374 bits (959), Expect = 1e-101, Method: Compositional matrix adjust.
Identities = 185/285 (65%), Positives = 220/285 (78%), Gaps = 0/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
IDV L+TGLSGAGRGT+AKVLEDL WYV DN+P +L+ + VD LAA + +LAVV+DV
Sbjct 10 IDVTLITGLSGAGRGTSAKVLEDLDWYVIDNVPAELVPQAVDLSLAADNPTKRLAVVLDV 69
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
RSR F G LDSV ELATR ITPRV+F+EASD LVRRYEQ RRSHPLQG+ TL EGIAA
Sbjct 70 RSRAFAGGLDSVVRELATRNITPRVLFLEASDAVLVRRYEQVRRSHPLQGDGTLLEGIAA 129
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ER+++APVRA AD++IDTS+LSV LR IE F + V SFGFKYGLP+D D
Sbjct 130 ERKLVAPVRAMADVVIDTSSLSVHDLRARIEPVFEDANTRKVKIAVLSFGFKYGLPIDVD 189
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
MV+DVRFLPNPHW+ ELRP TG+ VR+YVL +PGA EFL++ LL+ V+ GYR EGK
Sbjct 190 MVLDVRFLPNPHWIPELRPFTGRDDGVREYVLSQPGAGEFLKTLRDLLTPVLKGYRTEGK 249
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RYMTI +GCTGGKHRSVA+ EA+ +L D ++VR HRDLGRE
Sbjct 250 RYMTIGVGCTGGKHRSVAMTEAIAQILSEDDGVTVRTRHRDLGRE 294
>gi|226306513|ref|YP_002766473.1| hypothetical protein RER_30260 [Rhodococcus erythropolis PR4]
gi|229493536|ref|ZP_04387321.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|257096890|sp|C0ZZE9.1|Y3026_RHOE4 RecName: Full=UPF0042 nucleotide-binding protein RER_30260
gi|226185630|dbj|BAH33734.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229319497|gb|EEN85333.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=299
Score = 372 bits (955), Expect = 4e-101, Method: Compositional matrix adjust.
Identities = 188/288 (66%), Positives = 220/288 (77%), Gaps = 3/288 (1%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
+D +LVTGLSGAG TAAKVLEDLGWYVADNLPP+LI+RMV L + + +LAVV+DV
Sbjct 12 MDFLLVTGLSGAGLSTAAKVLEDLGWYVADNLPPELISRMVGLSLTSDPPVDRLAVVIDV 71
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQ---TLAEG 133
RSR FTGDL V EL I RV+++EASDD L+RR+EQ RRSHPLQ + TL+EG
Sbjct 72 RSRLFTGDLGWVLTELEAEPIHTRVLYLEASDDVLIRRFEQVRRSHPLQNDGIDGTLSEG 131
Query 134 IAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPM 193
IAAERR LA V+A ADL+IDTS L LR IE AFG D T VTV+SFGFKYGLPM
Sbjct 132 IAAERRQLAVVKAAADLVIDTSALKAHQLRQKIETAFGNDANRTMKVTVQSFGFKYGLPM 191
Query 194 DADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRR 253
DAD+V DVRFLPNPHW+ ELRP TGQ VRDYVL R GA ++L++Y L+ L + GYRR
Sbjct 192 DADLVCDVRFLPNPHWIPELRPHTGQDADVRDYVLSREGAEDYLDTYRHLVDLTIAGYRR 251
Query 254 EGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
EGKRYMTIA+GCTGGKHRSVA++EAL L S+ +SV +HRDLGRE
Sbjct 252 EGKRYMTIAVGCTGGKHRSVAMSEALARRLGSEDDISVSIVHRDLGRE 299
>gi|325676726|ref|ZP_08156400.1| ATP-binding protein [Rhodococcus equi ATCC 33707]
gi|325552508|gb|EGD22196.1| ATP-binding protein [Rhodococcus equi ATCC 33707]
Length=299
Score = 369 bits (947), Expect = 3e-100, Method: Compositional matrix adjust.
Identities = 185/291 (64%), Positives = 224/291 (77%), Gaps = 3/291 (1%)
Query 14 GGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVV 73
G ++V LVTGLSGAG TAAKVLEDLGWYV DNLPP+LITRMV+ G+ + I +LAVV
Sbjct 9 GADVEVALVTGLSGAGLSTAAKVLEDLGWYVVDNLPPELITRMVELGVESDPPIRRLAVV 68
Query 74 MDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQG---EQTL 130
+DVRSR FTGDL V L + RV+++EA+D L+RR+E RRSHPLQ E TL
Sbjct 69 VDVRSRPFTGDLGQVVAALEAMPVQIRVLYLEANDPVLIRRFEHVRRSHPLQSDSKEGTL 128
Query 131 AEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYG 190
+EGIAAER LA VRA+ADL++DTS L+V LR+ IE AFGG+ + VTV+SFGFK+G
Sbjct 129 SEGIAAERAKLAQVRASADLVVDTSALAVRELREKIETAFGGEASSVIQVTVQSFGFKHG 188
Query 191 LPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDG 250
LPMDAD+V DVRFLPNPHW+ ELRP TG AVRDYVL R GA E+L+++ RLL L G
Sbjct 189 LPMDADLVCDVRFLPNPHWIPELRPHTGLEEAVRDYVLSRDGAEEYLDTFRRLLELTTAG 248
Query 251 YRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
YRREGKRYMTIA+GCTGGKHRSVA++EAL L ++ L+VR +HRD+GRE
Sbjct 249 YRREGKRYMTIAVGCTGGKHRSVAMSEALAARLGTEDGLAVRVVHRDVGRE 299
>gi|312139599|ref|YP_004006935.1| hypothetical protein REQ_21980 [Rhodococcus equi 103S]
gi|311888938|emb|CBH48251.1| conserved hypothetical protein [Rhodococcus equi 103S]
Length=288
Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 184/288 (64%), Positives = 223/288 (78%), Gaps = 3/288 (1%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
++V LVTGLSGAG TAAKVLEDLGWYV DNLPP+LITRMV+ G+ + I +LAVV+DV
Sbjct 1 MEVALVTGLSGAGLSTAAKVLEDLGWYVVDNLPPELITRMVELGVESDPPIRRLAVVVDV 60
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQG---EQTLAEG 133
RSR FTGDL V L + RV+++EA+D L+RR+E RRSHPLQ E TL+EG
Sbjct 61 RSRPFTGDLGQVVAALEAMPVQIRVLYLEANDPVLIRRFEHVRRSHPLQSDSKEGTLSEG 120
Query 134 IAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPM 193
IAAER LA VRA+ADL++DTS L+V LR+ IE AFGG+ + VTV+SFGFK+GLPM
Sbjct 121 IAAERAKLAQVRASADLVVDTSALAVRELREKIETAFGGEASSVIQVTVQSFGFKHGLPM 180
Query 194 DADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRR 253
DAD+V DVRFLPNPHW+ ELRP TG AVRDYVL R GA E+L+++ RLL L GYRR
Sbjct 181 DADLVCDVRFLPNPHWIPELRPHTGLEEAVRDYVLSRDGAEEYLDTFRRLLELTTAGYRR 240
Query 254 EGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
EGKRYMTIA+GCTGGKHRSVA++EAL L ++ L+VR +HRD+GRE
Sbjct 241 EGKRYMTIAVGCTGGKHRSVAMSEALAARLGTEDGLAVRVVHRDVGRE 288
>gi|296393041|ref|YP_003657925.1| hypothetical protein Srot_0612 [Segniliparus rotundus DSM 44985]
gi|296180188|gb|ADG97094.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=321
Score = 364 bits (935), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 177/288 (62%), Positives = 223/288 (78%), Gaps = 1/288 (0%)
Query 15 GGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVM 74
I+V+ +TGLSGAG GTAAK+LED+GWYVADNLPPQL+TRMV+ GL ++I +LAVV+
Sbjct 34 AAIEVLFLTGLSGAGLGTAAKILEDVGWYVADNLPPQLVTRMVEIGLDPQTQIPRLAVVV 93
Query 75 DVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGI 134
D R+R FTGD+ ++ EL + + P+V+F++ASD+ L+RR+EQ RR HPLQG+ TLAEGI
Sbjct 94 DSRTRDFTGDIHALLAELRAQGLDPKVLFLQASDEVLIRRFEQVRRRHPLQGQDTLAEGI 153
Query 135 AAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGG-ATTSVTVESFGFKYGLPM 193
ER +LAP+ A AD ++DTS SV LRD +E+ +GG + TSVTV+SFGFKYGLP+
Sbjct 154 KRERDLLAPLLAEADSVLDTSVSSVKELRDVVEQEWGGSASRSKTSVTVQSFGFKYGLPL 213
Query 194 DADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRR 253
DA+MV DVRFLPNPHWV LR TG P V +YVL PGA E+L YH LL L++ YR+
Sbjct 214 DANMVADVRFLPNPHWVRHLRDKTGLTPEVSEYVLSAPGAKEYLRVYHELLRLMLTSYRK 273
Query 254 EGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
E KRYMTIA+GCTGGKHRSVA+A AL L+ DQQL+VR +HRDLG E
Sbjct 274 EAKRYMTIAVGCTGGKHRSVAMAVALGALIGQDQQLTVRVIHRDLGLE 321
>gi|302525894|ref|ZP_07278236.1| UPF0042 protein [Streptomyces sp. AA4]
gi|302434789|gb|EFL06605.1| UPF0042 protein [Streptomyces sp. AA4]
Length=296
Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 177/293 (61%), Positives = 220/293 (76%), Gaps = 0/293 (0%)
Query 9 ENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRIT 68
E G G++V +V+GLSGAGR TAAK LEDLGW+V DNLPP+LI MV+ G A IT
Sbjct 4 EEEKRGSGMEVAVVSGLSGAGRSTAAKCLEDLGWFVVDNLPPELIATMVELGAQARGAIT 63
Query 69 QLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQ 128
++AVVMDVRSR FT DL SV +L R PRV+F+EA+D LVRR+E RR HP+QG+
Sbjct 64 KVAVVMDVRSRAFTDDLASVIKDLDARGYKPRVLFLEATDAVLVRRFESVRRGHPMQGDG 123
Query 129 TLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFK 188
LA+GI AER++L+P+R ADL++DTS LSV LR IE AFG + T VTV SFG+K
Sbjct 124 RLADGITAERKLLSPLREEADLVLDTSALSVHDLRAKIEDAFGSEASTQTRVTVLSFGYK 183
Query 189 YGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVV 248
YGLPMDAD+VMDVRFLPNP W+ ELR TG VR+YVL + GA EFL+ YH+LL L+
Sbjct 184 YGLPMDADLVMDVRFLPNPFWIPELREHTGLDGEVRNYVLSQEGAEEFLDRYHQLLRLIG 243
Query 249 DGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
GY+REGKRY+T+A+GCTGGKHRSVAI+E L L ++ ++V+ +HRDLGRE
Sbjct 244 AGYKREGKRYLTLAVGCTGGKHRSVAISEELAQRLSNEDGMAVKVVHRDLGRE 296
>gi|317506093|ref|ZP_07963918.1| P-loop ATPase [Segniliparus rugosus ATCC BAA-974]
gi|316255592|gb|EFV14837.1| P-loop ATPase [Segniliparus rugosus ATCC BAA-974]
Length=298
Score = 362 bits (928), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 179/294 (61%), Positives = 224/294 (77%), Gaps = 1/294 (0%)
Query 9 ENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRIT 68
E + E I+V+ +TGLSGAG GTAAK+LED+GWYVADNLPPQL+TRMV+ GL ++I
Sbjct 5 EKKLESPAIEVLFLTGLSGAGLGTAAKILEDVGWYVADNLPPQLVTRMVEIGLDPQTQIP 64
Query 69 QLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQ 128
+LAVV+D R+R FTGD+ S+ EL + + P+V+F++ASD+ L+RR+EQ RR HPLQG+
Sbjct 65 RLAVVVDSRTRDFTGDIHSLLAELRGQGLDPKVLFLQASDEVLIRRFEQVRRRHPLQGQD 124
Query 129 TLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGG-ATTSVTVESFGF 187
TLAEGI ER +L P+ A AD I+DTS SV LRD +E+ +GG A TSVTV+SFGF
Sbjct 125 TLAEGIKRERNLLEPLLAEADSILDTSVSSVKELRDMVEQEWGGSAARAKTSVTVQSFGF 184
Query 188 KYGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLV 247
KYGLP+DA+MV DVRFLPNPHWV LR TG V +YVL PGA E+L +YH LL L+
Sbjct 185 KYGLPLDANMVADVRFLPNPHWVRHLRDHTGLDHEVSEYVLGAPGAREYLRTYHELLRLM 244
Query 248 VDGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
+ YR+E KRYMTIA+GCTGGKHRSVA+A AL L+ D QL+VR +HRDLG E
Sbjct 245 LTSYRKEAKRYMTIAVGCTGGKHRSVAMAVALGALIGQDDQLTVRVIHRDLGLE 298
>gi|331697225|ref|YP_004333464.1| hypothetical protein Psed_3422 [Pseudonocardia dioxanivorans
CB1190]
gi|326951914|gb|AEA25611.1| UPF0042 nucleotide-binding protein yhbJ [Pseudonocardia dioxanivorans
CB1190]
Length=297
Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 178/287 (63%), Positives = 220/287 (77%), Gaps = 0/287 (0%)
Query 15 GGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVM 74
GI+V LV+GLSGAGR TAAKVLEDLGW+V DNLPP+LI MVD G A IT++AVVM
Sbjct 11 AGIEVALVSGLSGAGRSTAAKVLEDLGWFVVDNLPPELIATMVDLGARARGEITRIAVVM 70
Query 75 DVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGI 134
DVRSR FT DL +V +L R PRV+F+EA+D LVRR+EQ RRSHP+QG+ L++GI
Sbjct 71 DVRSRAFTDDLGAVIKDLDARGYKPRVLFLEATDAVLVRRFEQVRRSHPMQGDGRLSDGI 130
Query 135 AAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMD 194
AAER +L P+R ADL++DTST+SV LR ++ER FG + T VTV SFG+KYGLPMD
Sbjct 131 AAERELLRPLREDADLVVDTSTMSVPLLRATLERTFGDELSPATRVTVLSFGYKYGLPMD 190
Query 195 ADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRRE 254
+D+V+DVRFLPNPHW+ ELR TG+ AVRDYVL + GA EF++ Y LL+L+ GYRRE
Sbjct 191 SDLVVDVRFLPNPHWIPELRDFTGRDAAVRDYVLSQEGAEEFIDRYLDLLALIGAGYRRE 250
Query 255 GKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
GKRY+T+++GCTGGKHRSVAI+E L L + + V HRDLGRE
Sbjct 251 GKRYLTVSVGCTGGKHRSVAISEELARRLAGAEHVVVNVSHRDLGRE 297
>gi|257055609|ref|YP_003133441.1| hypothetical protein Svir_15790 [Saccharomonospora viridis DSM
43017]
gi|256585481|gb|ACU96614.1| predicted P-loop-containing kinase [Saccharomonospora viridis
DSM 43017]
Length=303
Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 176/290 (61%), Positives = 219/290 (76%), Gaps = 0/290 (0%)
Query 12 SEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLA 71
+ G G++V +VTGLSGAGR TAAK LEDLGW+V DNLPP+LI+ MV+ G A IT++A
Sbjct 14 ARGSGMEVAVVTGLSGAGRSTAAKCLEDLGWFVVDNLPPELISTMVELGAQARGVITKVA 73
Query 72 VVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLA 131
VVMDVRSR FT DL SV +L R PRV+F+EA+D L+RR++Q RR HP+QG+ L
Sbjct 74 VVMDVRSRAFTDDLASVIKDLDARGYKPRVLFLEATDSVLIRRFDQVRRGHPMQGDGRLV 133
Query 132 EGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGL 191
+GI AER++LAP+R ADLI+DTS LSV LR IE AFG + T VTV SFG+KYGL
Sbjct 134 DGITAERKLLAPLREEADLILDTSALSVHDLRAKIEDAFGTESSTQTRVTVLSFGYKYGL 193
Query 192 PMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGY 251
PMD+D+VMDVRFLPNP W+ ELR +G VR+YVL + GA EFL+ YH LL LV GY
Sbjct 194 PMDSDLVMDVRFLPNPFWIPELRDQSGLDGDVRNYVLGQEGAEEFLQQYHELLRLVGAGY 253
Query 252 RREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
+REGKRY+T+A+GCTGGKHRSVAI+E L L + ++V+ +HRDLGRE
Sbjct 254 KREGKRYLTLAVGCTGGKHRSVAISEELANRLSKEDGMAVKVVHRDLGRE 303
>gi|256379212|ref|YP_003102872.1| hypothetical protein Amir_5205 [Actinosynnema mirum DSM 43827]
gi|255923515|gb|ACU39026.1| conserved hypothetical protein [Actinosynnema mirum DSM 43827]
Length=295
Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/293 (61%), Positives = 218/293 (75%), Gaps = 0/293 (0%)
Query 9 ENRSEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRIT 68
E E GI+V +VTGLSGAGR TAAK LEDLGW+V DNLPP+LI+ MV+ G A IT
Sbjct 3 ETAGEKSGIEVAVVTGLSGAGRSTAAKCLEDLGWFVVDNLPPELISTMVELGAQARGAIT 62
Query 69 QLAVVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQ 128
++AVVMDVRSR FT DL +V +L R P+V+F+EA+DD L+RR+E RR HP+Q +
Sbjct 63 RVAVVMDVRSRAFTDDLAAVIKDLDARGYKPKVLFLEATDDVLIRRFESVRRGHPMQADG 122
Query 129 TLAEGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFK 188
LA+GI AER +L P+R ADL++DTS LSV LR IE FG + T VTV SFG+K
Sbjct 123 RLADGIEAERVLLTPLREEADLVLDTSALSVHQLRAKIEDTFGTESATRTRVTVLSFGYK 182
Query 189 YGLPMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVV 248
YGLPMDAD+VMDVRFLPNP W+ ELR TG VR+YVL + GA EFL+ YH LL L+
Sbjct 183 YGLPMDADLVMDVRFLPNPFWIPELREQTGLDGEVRNYVLTQEGAEEFLDRYHELLRLIG 242
Query 249 DGYRREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
GYRREGKRY+T+A+GCTGGKHRSVAI+E L G L ++ ++V+ +HRDLGRE
Sbjct 243 AGYRREGKRYLTLAVGCTGGKHRSVAISEELAGRLATEDGMAVKVVHRDLGRE 295
>gi|300784685|ref|YP_003764976.1| P-loop ATPase [Amycolatopsis mediterranei U32]
gi|299794199|gb|ADJ44574.1| P-loop ATPase [Amycolatopsis mediterranei U32]
Length=296
Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/288 (61%), Positives = 216/288 (75%), Gaps = 0/288 (0%)
Query 14 GGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVV 73
G G++V +V+GLSGAGR TAAK LEDLGW+V DNLPP+LI MV+ G A IT++AVV
Sbjct 9 GSGMEVAVVSGLSGAGRSTAAKCLEDLGWFVVDNLPPELIATMVELGAQARGAITKVAVV 68
Query 74 MDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEG 133
MDVRSR FT DL SV +L R PRV+F+EA+D LVRR+E RR HP+QG+ LA+G
Sbjct 69 MDVRSRAFTDDLASVIKDLDARGYKPRVLFLEATDAVLVRRFEAVRRGHPMQGDGRLADG 128
Query 134 IAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPM 193
I AER +L P+R ADL++DTS+LSV LR IE AFG + T VTV SFG+KYGLPM
Sbjct 129 ITAERTLLEPLREEADLVLDTSSLSVHDLRAKIEDAFGSEASTQTRVTVLSFGYKYGLPM 188
Query 194 DADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRR 253
DAD+VMDVRFLPNP W+ ELR TG VR+YVL + GA EFL+ YH+LL L+ GY+R
Sbjct 189 DADLVMDVRFLPNPFWIPELREHTGLDGEVRNYVLSQEGAEEFLDRYHQLLRLIGAGYKR 248
Query 254 EGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
EGKRY+T+A+GCTGGKHRSVA++ L L + ++V+ +HRDLGRE
Sbjct 249 EGKRYLTLAVGCTGGKHRSVALSVELAERLSKEDGMAVKVVHRDLGRE 296
>gi|54025563|ref|YP_119805.1| hypothetical protein nfa35930 [Nocardia farcinica IFM 10152]
gi|66773971|sp|Q5YTQ0.1|Y3593_NOCFA RecName: Full=UPF0042 nucleotide-binding protein NFA_35930
gi|54017071|dbj|BAD58441.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=316
Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/292 (62%), Positives = 218/292 (75%), Gaps = 7/292 (2%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
++VV+VTGLSGAGRGTAAKVLEDLGWYVADNLPP+LI RMV+ G AA I +LA+VMDV
Sbjct 25 VEVVIVTGLSGAGRGTAAKVLEDLGWYVADNLPPELIGRMVELGAAADPPIRRLALVMDV 84
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQ---TLAEG 133
RSR FTGDL V ++L + RV+F+EASDD L+RR+ RR HPLQ E TL+ G
Sbjct 85 RSRFFTGDLSVVADQLRALGLRTRVLFLEASDDVLIRRFGFARRRHPLQSESADGTLSAG 144
Query 134 IAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPM 193
IA ER LA V+A ADL+IDT+ LS+ L +E A+GG A +TV+SFGFKYG+P+
Sbjct 145 IAVERVRLAGVKAAADLVIDTTELSIHQLHRKLEEAYGGGAPAALQLTVQSFGFKYGVPL 204
Query 194 DADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRR 253
DADMV+DVRFLPNPHW+ ELR +GQ V +YVL RPGA ++L + H L+ L GYR+
Sbjct 205 DADMVLDVRFLPNPHWIPELREHSGQETVVSEYVLSRPGAQDYLHTCHHLVDLTTSGYRQ 264
Query 254 EGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLS----VRALHRDLGRE 301
EGKRYMT+A+GCTGGKHRSVAIAEAL L+ +D VR +HRDLGRE
Sbjct 265 EGKRYMTVAVGCTGGKHRSVAIAEALGELIGADTSAESADVVRVVHRDLGRE 316
>gi|134098709|ref|YP_001104370.1| hypothetical protein SACE_2139 [Saccharopolyspora erythraea NRRL
2338]
gi|291003604|ref|ZP_06561577.1| hypothetical protein SeryN2_03702 [Saccharopolyspora erythraea
NRRL 2338]
gi|257096882|sp|A4FBM0.1|Y2139_SACEN RecName: Full=UPF0042 nucleotide-binding protein SACE_2139
gi|133911332|emb|CAM01445.1| uncharacterised P-loop ATPase protein UPF0042 [Saccharopolyspora
erythraea NRRL 2338]
Length=292
Score = 351 bits (901), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 174/290 (60%), Positives = 215/290 (75%), Gaps = 0/290 (0%)
Query 12 SEGGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLA 71
E GI+V +V+GLSGAGR TAAK LEDLGW+V DNLPP+LI MV+ G + IT++A
Sbjct 3 EEQTGIEVAVVSGLSGAGRSTAAKCLEDLGWFVVDNLPPELIATMVELGARSSGAITRVA 62
Query 72 VVMDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLA 131
VVMDVRSR FT DL SV +L R P+V+F+EA+D+ L+RR+EQ RR HPLQGE LA
Sbjct 63 VVMDVRSRAFTEDLGSVIKDLDARGYKPKVLFLEATDEVLIRRFEQVRRGHPLQGEGRLA 122
Query 132 EGIAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGL 191
+GIAAER +L+ +R+ ADL++DT+ LSV LR IE AFG + T VTV SFG+KYGL
Sbjct 123 DGIAAERSLLSRLRSEADLVLDTTALSVHQLRAKIEDAFGTEASTRTRVTVLSFGYKYGL 182
Query 192 PMDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGY 251
PMDAD+VMD RFLPNP W+ ELR G VR+YVL + GA EFL +Y +LL LV GY
Sbjct 183 PMDADLVMDCRFLPNPFWIPELREFNGLDEEVRNYVLGQEGAEEFLVNYQQLLRLVGAGY 242
Query 252 RREGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
REGKRY+T+A+GCTGGKHRSVA+ E L L D+ + V+ +HRDLGRE
Sbjct 243 HREGKRYLTLALGCTGGKHRSVALVEELARRLADDEGMMVKTVHRDLGRE 292
>gi|340526108|gb|AEK41313.1| glmZ(sRNA)-inactivating NTPase [Amycolatopsis mediterranei S699]
Length=285
Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/285 (61%), Positives = 214/285 (76%), Gaps = 0/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
++V +V+GLSGAGR TAAK LEDLGW+V DNLPP+LI MV+ G A IT++AVVMDV
Sbjct 1 MEVAVVSGLSGAGRSTAAKCLEDLGWFVVDNLPPELIATMVELGAQARGAITKVAVVMDV 60
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
RSR FT DL SV +L R PRV+F+EA+D LVRR+E RR HP+QG+ LA+GI A
Sbjct 61 RSRAFTDDLASVIKDLDARGYKPRVLFLEATDAVLVRRFEAVRRGHPMQGDGRLADGITA 120
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ER +L P+R ADL++DTS+LSV LR IE AFG + T VTV SFG+KYGLPMDAD
Sbjct 121 ERTLLEPLREEADLVLDTSSLSVHDLRAKIEDAFGSEASTQTRVTVLSFGYKYGLPMDAD 180
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
+VMDVRFLPNP W+ ELR TG VR+YVL + GA EFL+ YH+LL L+ GY+REGK
Sbjct 181 LVMDVRFLPNPFWIPELREHTGLDGEVRNYVLSQEGAEEFLDRYHQLLRLIGAGYKREGK 240
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RY+T+A+GCTGGKHRSVA++ L L + ++V+ +HRDLGRE
Sbjct 241 RYLTLAVGCTGGKHRSVALSVELAERLSKEDGMAVKVVHRDLGRE 285
>gi|258652975|ref|YP_003202131.1| hypothetical protein Namu_2797 [Nakamurella multipartita DSM
44233]
gi|258556200|gb|ACV79142.1| conserved hypothetical protein [Nakamurella multipartita DSM
44233]
Length=302
Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 169/286 (60%), Positives = 212/286 (75%), Gaps = 2/286 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
I V +V+GLSGAGR TAAK LED+GW+V DNLPP+LI+ MVD G +T++A+V+DV
Sbjct 18 IQVAIVSGLSGAGRSTAAKCLEDMGWFVVDNLPPELISTMVDLGSRTSGDVTRIAIVLDV 77
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
RSR FT DL +V +L + PRV+F+EA D L+RRYE NRR HPLQG LA+G+AA
Sbjct 78 RSRAFTEDLAAVIKDLDAKGYRPRVLFLEAGDAALIRRYEANRRKHPLQGSGRLADGVAA 137
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGA-TTSVTVESFGFKYGLPMDA 195
ER +L P+R AD+++DTS LSV LR +ERAFG S+TV SFGFKYGLP+DA
Sbjct 138 ERAVLEPLRQEADVVVDTSELSVHQLRAEVERAFGHSSPERKASMTVVSFGFKYGLPLDA 197
Query 196 DMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREG 255
D+V+D+RFLPNPHW+ ELR TG V DYVL + GA EFL+ Y L+ L+ GYRREG
Sbjct 198 DLVIDMRFLPNPHWIPELRDHTGLEQEVSDYVLSQEGATEFLDRYVELIDLISGGYRREG 257
Query 256 KRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
KRY+T+A+GCTGGKHRSVA+AE L L +D L+V+ +HRDLGRE
Sbjct 258 KRYLTLAVGCTGGKHRSVAVAEELKRRLNAD-TLTVQVVHRDLGRE 302
>gi|117928318|ref|YP_872869.1| hypothetical protein Acel_1111 [Acidothermus cellulolyticus 11B]
gi|257096838|sp|A0LTX3.1|Y1111_ACIC1 RecName: Full=UPF0042 nucleotide-binding protein Acel_1111
gi|117648781|gb|ABK52883.1| Uncharacterized P-loop ATPase protein UPF0042 [Acidothermus cellulolyticus
11B]
Length=311
Score = 342 bits (876), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/290 (60%), Positives = 211/290 (73%), Gaps = 4/290 (1%)
Query 16 GIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMD 75
GI +V++TGLSGAGR TAAK LEDLGW+V DNLPP L+ MVD G+ +G I ++A V+D
Sbjct 22 GIKLVVLTGLSGAGRSTAAKCLEDLGWFVVDNLPPGLLDTMVDLGVRSGGAINKIAAVVD 81
Query 76 VRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIA 135
VRSR FT DL L R R+VF+EASDD L+RR+E RR HPLQG+ LA+GIA
Sbjct 82 VRSRAFTSDLYGALGVLRNRGTALRIVFLEASDDELIRRFENVRRPHPLQGDGRLADGIA 141
Query 136 AERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDA 195
ER +L VR ADL+IDT+ L+V LR I AF D TV SFG+KYGLP DA
Sbjct 142 RERELLRDVRGVADLVIDTTNLNVHELRGKIIAAFSDDNQPALRATVVSFGYKYGLPADA 201
Query 196 DMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREG 255
D+V+D RFLPNPHWVDELRPLTG+ AVR+YVL +PGA +FL++Y ++L VVDGY REG
Sbjct 202 DLVVDCRFLPNPHWVDELRPLTGRDDAVREYVLAQPGAQDFLDTYSKVLGTVVDGYLREG 261
Query 256 KRYMTIAIGCTGGKHRSVAIAEALMGLLR----SDQQLSVRALHRDLGRE 301
KRY+T+A+GCTGGKHRSV IAE L LR ++ ++ V+ HRDLGRE
Sbjct 262 KRYLTLAVGCTGGKHRSVVIAEELAERLRRLATAESRIDVQVAHRDLGRE 311
>gi|324999179|ref|ZP_08120291.1| glmZ(sRNA)-inactivating NTPase [Pseudonocardia sp. P1]
Length=300
Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/289 (60%), Positives = 214/289 (75%), Gaps = 1/289 (0%)
Query 14 GGGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVV 73
G GI+V +V+GLSGAGR TAAKVLEDLGW+V DNLPP+LI MV+ G A + ++AVV
Sbjct 12 GPGIEVAVVSGLSGAGRSTAAKVLEDLGWFVVDNLPPELIATMVELGSRARGEVARIAVV 71
Query 74 MDVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEG 133
MDVRSR FT DL +V +L R PR++F+EASD LVRR+EQNRRSHPLQG + +G
Sbjct 72 MDVRSRAFTDDLGAVIKDLDGRGYRPRLLFLEASDAVLVRRFEQNRRSHPLQGAGRITDG 131
Query 134 IAAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGG-ATTSVTVESFGFKYGLP 192
+ AER +L P+R ADL++DTS LSV LR IE +F G+ A T +TV SFG+KYGLP
Sbjct 132 LNAEREVLRPLREDADLVVDTSNLSVHDLRSRIEGSFAGESAHAATRITVLSFGYKYGLP 191
Query 193 MDADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYR 252
+D+D+V+DVRFLPNPHW+ ELR TG+ V DYVL + GA EF++ Y LL LV GYR
Sbjct 192 LDSDLVVDVRFLPNPHWIPELREHTGRDHEVSDYVLSQEGAEEFVDRYLELLDLVGAGYR 251
Query 253 REGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
REGKRY+T+A+GCTGGKHRSVAI+E + L + + V HRD+GRE
Sbjct 252 REGKRYLTVAVGCTGGKHRSVAISEEIGRRLSAQDGVQVNVEHRDMGRE 300
>gi|336178124|ref|YP_004583499.1| UPF0042 nucleotide-binding protein yhbJ [Frankia symbiont of
Datisca glomerata]
gi|334859104|gb|AEH09578.1| UPF0042 nucleotide-binding protein yhbJ [Frankia symbiont of
Datisca glomerata]
Length=290
Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 162/285 (57%), Positives = 211/285 (75%), Gaps = 1/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
+++ ++TGLSGAGR TAAK LEDLGW+V DNLPP L+ M + GL + + ++AVV+DV
Sbjct 7 LELAIITGLSGAGRSTAAKCLEDLGWFVVDNLPPALLATMTELGLRSQGAVNRIAVVVDV 66
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
R R F DL + + + R + PRV+F+EA+D+TLVRR++ RR HPLQG+ + +GI+
Sbjct 67 RGRAFFSDLRATLDAHSARGMHPRVLFLEAADETLVRRFDHVRRPHPLQGDGRVVDGISR 126
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ER +LA +R +DL++DT+ L+V LR I+ AFG G + TV SFG+KYGLP+DAD
Sbjct 127 ERTLLAQLRGESDLVLDTTDLNVHELRTKIDAAFGQPSGTRLAATVVSFGYKYGLPLDAD 186
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
+V D RFLPNPHWV ELRP TG+ P VRDYVL +PGA EF+E Y LL LV +GY REGK
Sbjct 187 LVADCRFLPNPHWVAELRPYTGRDPQVRDYVLEQPGAEEFVEQYAALLRLVGEGYVREGK 246
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RY+T+A+GCTGGKHRSVA+AE L G L D + VR +HRDLGRE
Sbjct 247 RYLTLAVGCTGGKHRSVAVAEQLAGRLAGD-GVGVRVVHRDLGRE 290
>gi|111223983|ref|YP_714777.1| hypothetical protein FRAAL4592 [Frankia alni ACN14a]
gi|123338315|sp|Q0RH01.1|Y4592_FRAAA RecName: Full=UPF0042 nucleotide-binding protein FRAAL4592
gi|111151515|emb|CAJ63234.1| Putative kinase [Frankia alni ACN14a]
Length=289
Score = 332 bits (850), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 161/285 (57%), Positives = 210/285 (74%), Gaps = 1/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
+D+ ++TGLSGAGR TAAK LEDLGW+V DNLPP L++ M + G +G ++++ VV+DV
Sbjct 6 LDLAIITGLSGAGRSTAAKCLEDLGWFVVDNLPPALLSTMAELGHRSGGAVSRIGVVVDV 65
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
R R F DL + L R + PR++F+EASDD L+RR++ RR HPLQG++ + +GI
Sbjct 66 RGRAFFSDLRAAIAALDARGMHPRMLFLEASDDALIRRFDHVRRPHPLQGDERVVDGIGR 125
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ER +LA +R ADL++DT+ L+V LR I+ AFG G + TV SFG+KYGLP+DAD
Sbjct 126 ERALLAELRGEADLVLDTTDLNVHELRSKIDAAFGQPGANRLNATVVSFGYKYGLPLDAD 185
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
+V D RFLPNPHWV+ELRP TG+ P VR YVL +PGA EFL+ Y LL LV +GY REGK
Sbjct 186 LVADCRFLPNPHWVEELRPYTGRDPQVRSYVLAQPGAQEFLDQYAALLRLVGEGYAREGK 245
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RY+T+A+GCTGGKHRSVA+AE L L +D + VR +HRDLGRE
Sbjct 246 RYLTLAVGCTGGKHRSVAMAEQLGARLAAD-GVGVRVVHRDLGRE 289
>gi|288917082|ref|ZP_06411452.1| conserved hypothetical protein [Frankia sp. EUN1f]
gi|288351451|gb|EFC85658.1| conserved hypothetical protein [Frankia sp. EUN1f]
Length=289
Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/285 (57%), Positives = 211/285 (75%), Gaps = 1/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
+D+ ++TGLSGAGR TAAK LEDLGW+V DNLPP L++ M + G +G ++++AVV+DV
Sbjct 6 LDLAIITGLSGAGRSTAAKCLEDLGWFVVDNLPPALLSTMAELGHRSGGAVSRIAVVVDV 65
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
R R F DL + L +R + PR++F+EASDD LVRR++ RR HPLQG++ + +GI+
Sbjct 66 RGRAFFSDLRAAVEALDSRGMHPRMLFLEASDDALVRRFDHVRRPHPLQGDERVVDGISR 125
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ER +LA +R ADL++DT+ L+V LR I+ AFG + TV SFG+KYGLP+DAD
Sbjct 126 ERALLAELRGEADLVLDTTDLNVHELRAKIDVAFGQPRANRLNATVVSFGYKYGLPLDAD 185
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
V D RFLPNPHWV+ LRP TG+ P VRDYVL +PGA EF++ Y LL LV +GY REGK
Sbjct 186 FVADCRFLPNPHWVEALRPYTGRDPQVRDYVLAQPGAEEFVDQYTALLHLVGEGYVREGK 245
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RY+T+A+GCTGGKHRSVA+AE L L +D + VR +HRDLGRE
Sbjct 246 RYLTLAVGCTGGKHRSVAVAEQLGARLAAD-GIGVRVVHRDLGRE 289
>gi|269126429|ref|YP_003299799.1| hypothetical protein Tcur_2195 [Thermomonospora curvata DSM 43183]
gi|268311387|gb|ACY97761.1| conserved hypothetical protein [Thermomonospora curvata DSM 43183]
Length=294
Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 170/288 (60%), Positives = 205/288 (72%), Gaps = 2/288 (0%)
Query 15 GGIDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVM 74
G D+V+VTG+SGAGR TAAK LEDL W+V DNLPP L+ M D G + ++AVV+
Sbjct 8 GSPDIVIVTGMSGAGRSTAAKALEDLDWFVVDNLPPGLLATMADLGGRVREAVPRIAVVV 67
Query 75 DVRSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGI 134
DVRSR FT DL S EL R + PRVVF+EA+D+ LVRR+E RR HPLQG+ L EGI
Sbjct 68 DVRSRAFTSDLHSAIAELEARGVHPRVVFLEAADEELVRRFEAVRRPHPLQGDGRLVEGI 127
Query 135 AAERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGAT-TSVTVESFGFKYGLPM 193
ER +L VRA ADL+IDT+ L+V LR I FG GG + TV SFG+KYGLP+
Sbjct 128 TQERELLREVRAEADLVIDTTGLNVHELRAKIVGFFGAHGGESGLRFTVVSFGYKYGLPV 187
Query 194 DADMVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRR 253
DAD+V+D RFLPNPHWV ELRP G+ VRDYVL R GA EFL+SY +L L+ +GY R
Sbjct 188 DADLVVDCRFLPNPHWVPELRPKNGRDAPVRDYVLSRHGAKEFLDSYAEVLRLLAEGYER 247
Query 254 EGKRYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
EGK Y+T+A+GCTGGKHRSVA+AE L LR D + V+ HRDLGRE
Sbjct 248 EGKHYVTLAVGCTGGKHRSVAMAEQLAARLR-DAGMDVQVTHRDLGRE 294
>gi|86740339|ref|YP_480739.1| hypothetical protein Francci3_1634 [Frankia sp. CcI3]
gi|119391277|sp|Q2JCI2.1|Y1634_FRASC RecName: Full=UPF0042 nucleotide-binding protein Francci3_1634
gi|86567201|gb|ABD11010.1| Uncharacterised P-loop ATPase protein UPF0042 [Frankia sp. CcI3]
Length=289
Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 161/285 (57%), Positives = 210/285 (74%), Gaps = 1/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
+D+ ++TGLSGAGR TAAK LEDLGW+V DNLPP+L++ M + G +G I+++AVV+DV
Sbjct 6 LDLAIITGLSGAGRSTAAKCLEDLGWFVVDNLPPELLSTMAELGRRSGGAISRIAVVVDV 65
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
R R F DL + L R + PR++F+EASDD L+RR+E RR HPLQ ++ + +GI
Sbjct 66 RGRPFFSDLRAAIAALDARGMHPRMLFLEASDDALIRRFEHVRRPHPLQRDERVVDGIGR 125
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ER +LA +R ADL++DT+ L+V LR I+ AFG + TV SFG+KYGLP+DAD
Sbjct 126 ERILLAELRGEADLVLDTTDLNVHELRSKIDAAFGQPNANRLNATVVSFGYKYGLPLDAD 185
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
+V D RFLPNPHWV+ LRP TG+ P VRDYVL +PGA +FL+ Y LL LV +GY REGK
Sbjct 186 LVADCRFLPNPHWVEALRPFTGRDPQVRDYVLAQPGAQDFLDQYSALLRLVGEGYAREGK 245
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RY+T+A+GCTGGKHRSVAIAE L G+ + + VR +HRDLGRE
Sbjct 246 RYLTLAVGCTGGKHRSVAIAEQL-GIRLAAGGVGVRVVHRDLGRE 289
>gi|158313895|ref|YP_001506403.1| hypothetical protein Franean1_2060 [Frankia sp. EAN1pec]
gi|226701145|sp|A8KYR1.1|Y2060_FRASN RecName: Full=UPF0042 nucleotide-binding protein Franean1_2060
gi|158109300|gb|ABW11497.1| conserved hypothetical protein [Frankia sp. EAN1pec]
Length=289
Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/285 (57%), Positives = 210/285 (74%), Gaps = 1/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
+D+ ++TGLSGAGR TAAK LEDLGW+V DNLPP L++ M + G +G ++++AVV+DV
Sbjct 6 LDLAIITGLSGAGRSTAAKCLEDLGWFVVDNLPPALLSTMAELGHRSGGAVSRIAVVVDV 65
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
R R F DL + L +R + PR++F+EASDD LVRR++ RR HPLQG++ + +GI
Sbjct 66 RGRAFFSDLRAAVEALDSRGMHPRMLFLEASDDALVRRFDHVRRPHPLQGDERVVDGINR 125
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ER +LA +R ADL++DT+ L+V LR I+ AFG + TV SFG+KYGLP+DAD
Sbjct 126 ERTLLAELRGEADLVLDTTDLNVHELRAKIDAAFGQPRANRLNATVISFGYKYGLPLDAD 185
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
+V D RFLPNPHWV+ LRP TG+ VRDYVL +PGA EF++ Y LL LV +GY REGK
Sbjct 186 LVADCRFLPNPHWVEALRPYTGRDSQVRDYVLAQPGATEFVDQYTALLRLVGEGYVREGK 245
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RY+T+A+GCTGGKHRSVA+AE L L +D + VR +HRDLGRE
Sbjct 246 RYLTLAVGCTGGKHRSVAVAEQLGARLAAD-GVGVRVVHRDLGRE 289
>gi|289772327|ref|ZP_06531705.1| UPF0042 protein [Streptomyces lividans TK24]
gi|289702526|gb|EFD69955.1| UPF0042 protein [Streptomyces lividans TK24]
Length=347
Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/284 (56%), Positives = 207/284 (73%), Gaps = 1/284 (0%)
Query 18 DVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDVR 77
++V+++G+SGAGR TAAK LEDLGW+V DNLPP LI MV+ G + + ++AVV+DVR
Sbjct 65 ELVIISGMSGAGRSTAAKCLEDLGWFVVDNLPPALIPTMVELGARSQGNVARIAVVVDVR 124
Query 78 SRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAAE 137
R F +L +L R +T R+VF+E+SDD LVRR+E RR HPLQG+ + +GIAAE
Sbjct 125 GRRFFDNLRESLADLDARGVTRRIVFLESSDDALVRRFESVRRPHPLQGDGRIVDGIAAE 184
Query 138 RRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDADM 197
R +L +R ADL+IDTS+L+V LR ++ F GD TV SFGFKYGLP+DAD+
Sbjct 185 RELLRELRGDADLVIDTSSLNVHELRAKMDAQFAGDQEPELRATVMSFGFKYGLPVDADL 244
Query 198 VMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGKR 257
V+D+RFLPNPHWV ELRP TG + V YVL++PGA EFL+ Y LL L+ GYRREGKR
Sbjct 245 VVDMRFLPNPHWVPELRPFTGLNEEVSSYVLNQPGAKEFLDRYAELLQLIAAGYRREGKR 304
Query 258 YMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
Y+T+A+GCTGGKHRSVA++E L L ++ +V +HRD+GRE
Sbjct 305 YVTVAVGCTGGKHRSVAMSEKLAARLAAEGVETV-VVHRDMGRE 347
>gi|21220437|ref|NP_626216.1| hypothetical protein SCO1952 [Streptomyces coelicolor A3(2)]
gi|5353536|gb|AAD42167.1|AF106003_2 unknown [Streptomyces coelicolor A3(2)]
gi|4468688|emb|CAB38142.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length=338
Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/284 (56%), Positives = 207/284 (73%), Gaps = 1/284 (0%)
Query 18 DVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDVR 77
++V+++G+SGAGR TAAK LEDLGW+V DNLPP LI MV+ G + + ++AVV+DVR
Sbjct 56 ELVIISGMSGAGRSTAAKCLEDLGWFVVDNLPPALIPTMVELGARSQGNVARIAVVVDVR 115
Query 78 SRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAAE 137
R F +L +L R +T R+VF+E+SDD LVRR+E RR HPLQG+ + +GIAAE
Sbjct 116 GRRFFDNLRESLADLDARGVTRRIVFLESSDDALVRRFESVRRPHPLQGDGRIVDGIAAE 175
Query 138 RRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDADM 197
R +L +R ADL+IDTS+L+V LR ++ F GD TV SFGFKYGLP+DAD+
Sbjct 176 RELLRELRGDADLVIDTSSLNVHELRAKMDAQFAGDQEPELRATVMSFGFKYGLPVDADL 235
Query 198 VMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGKR 257
V+D+RFLPNPHWV ELRP TG + V YVL++PGA EFL+ Y LL L+ GYRREGKR
Sbjct 236 VVDMRFLPNPHWVPELRPFTGLNEEVSSYVLNQPGAKEFLDRYAELLQLIAAGYRREGKR 295
Query 258 YMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
Y+T+A+GCTGGKHRSVA++E L L ++ +V +HRD+GRE
Sbjct 296 YVTVAVGCTGGKHRSVAMSEKLAARLAAEGVETV-VVHRDMGRE 338
>gi|254384195|ref|ZP_04999539.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194343084|gb|EDX24050.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length=327
Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/284 (56%), Positives = 206/284 (73%), Gaps = 1/284 (0%)
Query 18 DVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDVR 77
++V+++G+SGAGR TAAK LEDLGW+V DNLPP LI MV+ G + + ++AVV+DVR
Sbjct 45 ELVIISGMSGAGRSTAAKCLEDLGWFVVDNLPPALIPTMVELGARSQGNVARIAVVVDVR 104
Query 78 SRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAAE 137
R F L ++L +R +T R+VF+E+SDD LVRR+E RR HPLQG+ + +GIAAE
Sbjct 105 GRQFFDALRESLSDLESRGVTRRIVFLESSDDALVRRFESVRRPHPLQGDGRIVDGIAAE 164
Query 138 RRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDADM 197
R +L +R ADL+IDTS+L+V LR ++ F GD TV SFG+KYGLP+DAD+
Sbjct 165 RDLLRELRGDADLVIDTSSLNVHELRAKMDAQFAGDEEPELRATVMSFGYKYGLPVDADL 224
Query 198 VMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGKR 257
V+D RF+PNPHWV ELRP TG +P V YV +PGA EFL+ Y LL L+ GYRREGKR
Sbjct 225 VVDCRFIPNPHWVPELRPFTGLNPEVSGYVFSQPGAKEFLDRYTELLQLIATGYRREGKR 284
Query 258 YMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
Y+TIA+GCTGGKHRSVA++E L L S+ +V +HRD+GRE
Sbjct 285 YVTIAVGCTGGKHRSVAMSEKLAARLASEGVETV-VVHRDMGRE 327
>gi|30173503|sp|Q9Z513.2|Y1952_STRCO RecName: Full=UPF0042 nucleotide-binding protein SCO1952
Length=299
Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/284 (56%), Positives = 207/284 (73%), Gaps = 1/284 (0%)
Query 18 DVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDVR 77
++V+++G+SGAGR TAAK LEDLGW+V DNLPP LI MV+ G + + ++AVV+DVR
Sbjct 17 ELVIISGMSGAGRSTAAKCLEDLGWFVVDNLPPALIPTMVELGARSQGNVARIAVVVDVR 76
Query 78 SRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAAE 137
R F +L +L R +T R+VF+E+SDD LVRR+E RR HPLQG+ + +GIAAE
Sbjct 77 GRRFFDNLRESLADLDARGVTRRIVFLESSDDALVRRFESVRRPHPLQGDGRIVDGIAAE 136
Query 138 RRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDADM 197
R +L +R ADL+IDTS+L+V LR ++ F GD TV SFGFKYGLP+DAD+
Sbjct 137 RELLRELRGDADLVIDTSSLNVHELRAKMDAQFAGDQEPELRATVMSFGFKYGLPVDADL 196
Query 198 VMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGKR 257
V+D+RFLPNPHWV ELRP TG + V YVL++PGA EFL+ Y LL L+ GYRREGKR
Sbjct 197 VVDMRFLPNPHWVPELRPFTGLNEEVSSYVLNQPGAKEFLDRYAELLQLIAAGYRREGKR 256
Query 258 YMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
Y+T+A+GCTGGKHRSVA++E L L ++ +V +HRD+GRE
Sbjct 257 YVTVAVGCTGGKHRSVAMSEKLAARLAAEGVETV-VVHRDMGRE 299
>gi|290961317|ref|YP_003492499.1| hypothetical protein SCAB_69661 [Streptomyces scabiei 87.22]
gi|260650843|emb|CBG73960.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=356
Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/284 (56%), Positives = 206/284 (73%), Gaps = 1/284 (0%)
Query 18 DVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDVR 77
++V+++G+SGAGR TAAK LEDLGW+V DNLPP LI MV+ G + + ++AVV+DVR
Sbjct 74 ELVIISGMSGAGRSTAAKCLEDLGWFVVDNLPPALIPTMVELGARSQGNVARIAVVVDVR 133
Query 78 SRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAAE 137
R F +L +LAT+ +T R+VF+E+SDD LVRR+E RR HPLQG+ + +GIAAE
Sbjct 134 GRRFFDNLRDSLADLATKNVTRRIVFLESSDDALVRRFESVRRPHPLQGDGRITDGIAAE 193
Query 138 RRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDADM 197
R +L +R ADL+IDTS+L+V LR ++ F G+ TV SFGFKYGLP+DAD+
Sbjct 194 RELLRELRGDADLVIDTSSLNVHELRAKMDAQFAGEEEPELRATVMSFGFKYGLPVDADL 253
Query 198 VMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGKR 257
V+D+RFLPNPHWV ELRP TG + V YV ++PGA EFL+ Y LL ++ GYRREGKR
Sbjct 254 VVDMRFLPNPHWVPELRPFTGLNEEVSAYVFNQPGAKEFLDRYTELLQMIAAGYRREGKR 313
Query 258 YMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
Y+TIA+GCTGGKHRSVA +E L L S Q + +HRD+GRE
Sbjct 314 YVTIAVGCTGGKHRSVATSEKLAARLAS-QGVETVVVHRDMGRE 356
>gi|312198681|ref|YP_004018742.1| hypothetical protein FraEuI1c_4882 [Frankia sp. EuI1c]
gi|311230017|gb|ADP82872.1| hypothetical protein FraEuI1c_4882 [Frankia sp. EuI1c]
Length=294
Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 157/285 (56%), Positives = 208/285 (73%), Gaps = 1/285 (0%)
Query 17 IDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDV 76
+D+ ++TGLSGAGR TAAK LEDLGW+V DNLPP L++ M + G +G ++++AVV+DV
Sbjct 11 LDLAIITGLSGAGRSTAAKCLEDLGWFVVDNLPPALLSTMAELGRRSGGGVSRIAVVVDV 70
Query 77 RSRGFTGDLDSVRNELATRAITPRVVFMEASDDTLVRRYEQNRRSHPLQGEQTLAEGIAA 136
R R F DL + + L + PRV+F+EASDD L+RR++ RR HPLQG + +GI+
Sbjct 71 RGRAFFADLRAAIDALDAGGMRPRVLFLEASDDALIRRFDHVRRPHPLQGADRVVDGISR 130
Query 137 ERRMLAPVRATADLIIDTSTLSVGGLRDSIERAFGGDGGATTSVTVESFGFKYGLPMDAD 196
ER LA +R ADL++DT+ L+V LR I+ AFG GG + TV SFG++YGLP+DAD
Sbjct 131 ERTQLAELRGEADLVLDTTDLNVHELRSKIDAAFGQPGGNRLNATVVSFGYRYGLPLDAD 190
Query 197 MVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLHRPGAAEFLESYHRLLSLVVDGYRREGK 256
+V D RFL NPHWV+ LRP TG+ P VRDYVL +PGA +F++ Y LL LV DGY REGK
Sbjct 191 LVADCRFLANPHWVEALRPFTGRDPQVRDYVLDQPGAQDFIDRYAELLRLVGDGYLREGK 250
Query 257 RYMTIAIGCTGGKHRSVAIAEALMGLLRSDQQLSVRALHRDLGRE 301
RY+T+A+GCTGG+HRSVA+AE L L + + V+ +HRDLGRE
Sbjct 251 RYLTLAVGCTGGRHRSVAVAEELGARLAA-TGVGVQVVHRDLGRE 294
Lambda K H
0.321 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 502678578132
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40