BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1424c

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608562|ref|NP_215940.1|  hypothetical protein Rv1424c [Mycob...   509    2e-142
gi|289569441|ref|ZP_06449668.1|  membrane protein [Mycobacterium ...   464    5e-129
gi|167968463|ref|ZP_02550740.1|  hypothetical membrane protein [M...   410    1e-112
gi|15840881|ref|NP_335918.1|  hypothetical protein MT1467 [Mycoba...   229    4e-58 
gi|300715081|ref|YP_003739884.1|  conserved uncharacterized prote...  37.0    2.6   


>gi|15608562|ref|NP_215940.1| hypothetical protein Rv1424c [Mycobacterium tuberculosis H37Rv]
 gi|31792618|ref|NP_855111.1| hypothetical protein Mb1459c [Mycobacterium bovis AF2122/97]
 gi|121637354|ref|YP_977577.1| hypothetical protein BCG_1485c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 45 more sequence titles
 Length=253

 Score =  509 bits (1310),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 253/253 (100%), Positives = 253/253 (100%), Gaps = 0/253 (0%)

Query  1    MTVVPGAPSRPASAVSRPSYRQCVQASAQTSARRYSFPSYRRPPAEKLVFPVLLGILTLL  60
            MTVVPGAPSRPASAVSRPSYRQCVQASAQTSARRYSFPSYRRPPAEKLVFPVLLGILTLL
Sbjct  1    MTVVPGAPSRPASAVSRPSYRQCVQASAQTSARRYSFPSYRRPPAEKLVFPVLLGILTLL  60

Query  61   LSACQTASASGYNEPRGYDRATLKLVFSMDLGMCLNRFTYDSKLAPSRPQVVACDSREAR  120
            LSACQTASASGYNEPRGYDRATLKLVFSMDLGMCLNRFTYDSKLAPSRPQVVACDSREAR
Sbjct  61   LSACQTASASGYNEPRGYDRATLKLVFSMDLGMCLNRFTYDSKLAPSRPQVVACDSREAR  120

Query  121  IRNDGFHANAPSCMRIDYELITQNHRAYYCLKYLVRVGYCYPAVTTPGKPPSVLLYAPSA  180
            IRNDGFHANAPSCMRIDYELITQNHRAYYCLKYLVRVGYCYPAVTTPGKPPSVLLYAPSA
Sbjct  121  IRNDGFHANAPSCMRIDYELITQNHRAYYCLKYLVRVGYCYPAVTTPGKPPSVLLYAPSA  180

Query  181  CDESLPSPRVATALVPGTRSANREFSRFVVTEIKSLGAGGRCDSASVSLQPPEEIEGPAI  240
            CDESLPSPRVATALVPGTRSANREFSRFVVTEIKSLGAGGRCDSASVSLQPPEEIEGPAI
Sbjct  181  CDESLPSPRVATALVPGTRSANREFSRFVVTEIKSLGAGGRCDSASVSLQPPEEIEGPAI  240

Query  241  PPASSQLVCVAPK  253
            PPASSQLVCVAPK
Sbjct  241  PPASSQLVCVAPK  253


>gi|289569441|ref|ZP_06449668.1| membrane protein [Mycobacterium tuberculosis T17]
 gi|289543195|gb|EFD46843.1| membrane protein [Mycobacterium tuberculosis T17]
Length=230

 Score =  464 bits (1194),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 230/230 (100%), Gaps = 0/230 (0%)

Query  24   VQASAQTSARRYSFPSYRRPPAEKLVFPVLLGILTLLLSACQTASASGYNEPRGYDRATL  83
            +QASAQTSARRYSFPSYRRPPAEKLVFPVLLGILTLLLSACQTASASGYNEPRGYDRATL
Sbjct  1    MQASAQTSARRYSFPSYRRPPAEKLVFPVLLGILTLLLSACQTASASGYNEPRGYDRATL  60

Query  84   KLVFSMDLGMCLNRFTYDSKLAPSRPQVVACDSREARIRNDGFHANAPSCMRIDYELITQ  143
            KLVFSMDLGMCLNRFTYDSKLAPSRPQVVACDSREARIRNDGFHANAPSCMRIDYELITQ
Sbjct  61   KLVFSMDLGMCLNRFTYDSKLAPSRPQVVACDSREARIRNDGFHANAPSCMRIDYELITQ  120

Query  144  NHRAYYCLKYLVRVGYCYPAVTTPGKPPSVLLYAPSACDESLPSPRVATALVPGTRSANR  203
            NHRAYYCLKYLVRVGYCYPAVTTPGKPPSVLLYAPSACDESLPSPRVATALVPGTRSANR
Sbjct  121  NHRAYYCLKYLVRVGYCYPAVTTPGKPPSVLLYAPSACDESLPSPRVATALVPGTRSANR  180

Query  204  EFSRFVVTEIKSLGAGGRCDSASVSLQPPEEIEGPAIPPASSQLVCVAPK  253
            EFSRFVVTEIKSLGAGGRCDSASVSLQPPEEIEGPAIPPASSQLVCVAPK
Sbjct  181  EFSRFVVTEIKSLGAGGRCDSASVSLQPPEEIEGPAIPPASSQLVCVAPK  230


>gi|167968463|ref|ZP_02550740.1| hypothetical membrane protein [Mycobacterium tuberculosis H37Ra]
 gi|254550438|ref|ZP_05140885.1| hypothetical protein Mtube_08247 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294994986|ref|ZP_06800677.1| hypothetical protein Mtub2_10855 [Mycobacterium tuberculosis 
210]
 30 more sequence titles
 Length=202

 Score =  410 bits (1054),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 201/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%)

Query  52   VLLGILTLLLSACQTASASGYNEPRGYDRATLKLVFSMDLGMCLNRFTYDSKLAPSRPQV  111
            +LLGILTLLLSACQTASASGYNEPRGYDRATLKLVFSMDLGMCLNRFTYDSKLAPSRPQV
Sbjct  1    MLLGILTLLLSACQTASASGYNEPRGYDRATLKLVFSMDLGMCLNRFTYDSKLAPSRPQV  60

Query  112  VACDSREARIRNDGFHANAPSCMRIDYELITQNHRAYYCLKYLVRVGYCYPAVTTPGKPP  171
            VACDSREARIRNDGFHANAPSCMRIDYELITQNHRAYYCLKYLVRVGYCYPAVTTPGKPP
Sbjct  61   VACDSREARIRNDGFHANAPSCMRIDYELITQNHRAYYCLKYLVRVGYCYPAVTTPGKPP  120

Query  172  SVLLYAPSACDESLPSPRVATALVPGTRSANREFSRFVVTEIKSLGAGGRCDSASVSLQP  231
            SVLLYAPSACDESLPSPRVATALVPGTRSANREFSRFVVTEIKSLGAGGRCDSASVSLQP
Sbjct  121  SVLLYAPSACDESLPSPRVATALVPGTRSANREFSRFVVTEIKSLGAGGRCDSASVSLQP  180

Query  232  PEEIEGPAIPPASSQLVCVAPK  253
            PEEIEGPAIPPASSQLVCVAPK
Sbjct  181  PEEIEGPAIPPASSQLVCVAPK  202


>gi|15840881|ref|NP_335918.1| hypothetical protein MT1467 [Mycobacterium tuberculosis CDC1551]
 gi|13881082|gb|AAK45732.1| hypothetical protein MT1467 [Mycobacterium tuberculosis CDC1551]
Length=114

 Score =  229 bits (583),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 113/114 (99%), Positives = 114/114 (100%), Gaps = 0/114 (0%)

Query  140  LITQNHRAYYCLKYLVRVGYCYPAVTTPGKPPSVLLYAPSACDESLPSPRVATALVPGTR  199
            +ITQNHRAYYCLKYLVRVGYCYPAVTTPGKPPSVLLYAPSACDESLPSPRVATALVPGTR
Sbjct  1    MITQNHRAYYCLKYLVRVGYCYPAVTTPGKPPSVLLYAPSACDESLPSPRVATALVPGTR  60

Query  200  SANREFSRFVVTEIKSLGAGGRCDSASVSLQPPEEIEGPAIPPASSQLVCVAPK  253
            SANREFSRFVVTEIKSLGAGGRCDSASVSLQPPEEIEGPAIPPASSQLVCVAPK
Sbjct  61   SANREFSRFVVTEIKSLGAGGRCDSASVSLQPPEEIEGPAIPPASSQLVCVAPK  114


>gi|300715081|ref|YP_003739884.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299060917|emb|CAX58024.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
Length=381

 Score = 37.0 bits (84),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 35/107 (33%), Positives = 45/107 (43%), Gaps = 11/107 (10%)

Query  70   SGYNEPRGYDRATL---KLVFSMDLGM---CLNRFTYDSKLAPSRPQVVACDSREARIRN  123
            S +N P  +  AT    K VFS DLG+      R + D KL P+ P  +   S  A  R+
Sbjct  172  SDHNGPHAHMIATDLSGKFVFSTDLGLDRIYQYRLSADGKLQPNTPAWIPASSAGAGPRH  231

Query  124  DGFHANAPSCMRIDYELITQNHRAYYCLKYLVRVGYCYPAVTTPGKP  170
              FH +  S   I+ E  T  H   Y L    + G    A T P  P
Sbjct  232  FVFHPDGHSVYLINEEASTLTH---YLLNR--KTGTLSEAATVPALP  273



Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 368391130380


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40