BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1429 Length=422 Score E Sequences producing significant alignments: (Bits) Value gi|15608567|ref|NP_215945.1| hypothetical protein Rv1429 [Mycoba... 840 0.0 gi|289447026|ref|ZP_06436770.1| conserved hypothetical protein [... 839 0.0 gi|340626443|ref|YP_004744895.1| hypothetical protein MCAN_14451... 838 0.0 gi|15840886|ref|NP_335923.1| hypothetical protein MT1472 [Mycoba... 837 0.0 gi|339294407|gb|AEJ46518.1| hypothetical protein CCDC5079_1328 [... 837 0.0 gi|289442874|ref|ZP_06432618.1| conserved hypothetical protein [... 835 0.0 gi|294994990|ref|ZP_06800681.1| hypothetical protein Mtub2_10885... 831 0.0 gi|289749987|ref|ZP_06509365.1| conserved hypothetical protein [... 788 0.0 gi|240171799|ref|ZP_04750458.1| hypothetical protein MkanA1_2096... 567 1e-159 gi|311744357|ref|ZP_07718159.1| conserved hypothetical protein [... 290 4e-76 gi|29827884|ref|NP_822518.1| hypothetical protein SAV_1343 [Stre... 275 9e-72 gi|326332574|ref|ZP_08198842.1| hypothetical protein NBCG_04018 ... 196 4e-48 gi|300787003|ref|YP_003767294.1| hypothetical protein AMED_5127 ... 195 1e-47 gi|183981598|ref|YP_001849889.1| hypothetical protein MMAR_1582 ... 183 4e-44 gi|118618757|ref|YP_907089.1| hypothetical protein MUL_3452 [Myc... 177 3e-42 gi|240170379|ref|ZP_04749038.1| hypothetical protein MkanA1_1379... 171 2e-40 gi|226362670|ref|YP_002780448.1| CdaR family transcriptional reg... 171 2e-40 gi|302530215|ref|ZP_07282557.1| predicted protein [Streptomyces ... 162 7e-38 gi|333922108|ref|YP_004495689.1| hypothetical protein AS9A_4456 ... 158 2e-36 gi|226309064|ref|YP_002769024.1| CdaR family transcriptional reg... 157 2e-36 gi|333920056|ref|YP_004493637.1| hypothetical protein AS9A_2390 ... 157 3e-36 gi|260905674|ref|ZP_05913996.1| hypothetical protein BlinB_10102... 156 7e-36 gi|257056612|ref|YP_003134444.1| regulator of polyketide synthas... 155 2e-35 gi|229491813|ref|ZP_04385634.1| conserved hypothetical protein [... 154 3e-35 gi|326382684|ref|ZP_08204375.1| hypothetical protein SCNU_07090 ... 154 4e-35 gi|302529880|ref|ZP_07282222.1| predicted protein [Streptomyces ... 151 2e-34 gi|111020453|ref|YP_703425.1| hypothetical protein RHA1_ro03464 ... 151 3e-34 gi|343926342|ref|ZP_08765847.1| putative CdaR family transcripti... 148 2e-33 gi|333992637|ref|YP_004525251.1| hypothetical protein JDM601_399... 146 6e-33 gi|145225199|ref|YP_001135877.1| hypothetical protein Mflv_4621 ... 145 1e-32 gi|183981618|ref|YP_001849909.1| hypothetical protein MMAR_1603 ... 145 1e-32 gi|118618745|ref|YP_907077.1| hypothetical protein MUL_3434 [Myc... 142 8e-32 gi|111024979|ref|YP_707399.1| hypothetical protein RHA1_ro08196 ... 142 1e-31 gi|40787287|gb|AAR90204.1| hypothetical protein PDK3.063 [Rhodoc... 142 1e-31 gi|324997138|ref|ZP_08118250.1| hypothetical protein PseP1_00170... 138 1e-30 gi|183981345|ref|YP_001849636.1| hypothetical protein MMAR_1323 ... 137 3e-30 gi|118618038|ref|YP_906370.1| hypothetical protein MUL_2557 [Myc... 132 8e-29 gi|296140551|ref|YP_003647794.1| PucR family transcriptional reg... 130 5e-28 gi|240170688|ref|ZP_04749347.1| hypothetical protein MkanA1_1534... 126 9e-27 gi|54025185|ref|YP_119427.1| hypothetical protein nfa32160 [Noca... 125 2e-26 gi|290955996|ref|YP_003487178.1| hypothetical protein SCAB_14641... 114 2e-23 gi|345013629|ref|YP_004815983.1| putative PucR family transcript... 113 7e-23 gi|240170335|ref|ZP_04748994.1| hypothetical protein MkanA1_1356... 102 2e-19 gi|111017753|ref|YP_700725.1| hypothetical protein RHA1_ro00732 ... 101 3e-19 gi|54022358|ref|YP_116600.1| hypothetical protein nfa3940 [Nocar... 99.8 8e-19 gi|111025737|ref|YP_708157.1| hypothetical protein RHA1_ro08955 ... 95.5 2e-17 gi|226309082|ref|YP_002769042.1| CdaR family transcriptional reg... 95.1 2e-17 gi|333920275|ref|YP_004493856.1| hypothetical protein AS9A_2609 ... 94.7 3e-17 gi|111020067|ref|YP_703039.1| hypothetical protein RHA1_ro03078 ... 94.4 3e-17 gi|296394810|ref|YP_003659694.1| PucR family transcriptional reg... 94.4 3e-17 >gi|15608567|ref|NP_215945.1| hypothetical protein Rv1429 [Mycobacterium tuberculosis H37Rv] gi|31792623|ref|NP_855116.1| hypothetical protein Mb1464 [Mycobacterium bovis AF2122/97] gi|121637359|ref|YP_977582.1| hypothetical protein BCG_1490 [Mycobacterium bovis BCG str. Pasteur 1173P2] 67 more sequence titles Length=422 Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/422 (99%), Positives = 422/422 (100%), Gaps = 0/422 (0%) Query 1 VAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 +AEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV Sbjct 1 MAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 Query 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA Sbjct 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 Query 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR Sbjct 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 Query 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD Sbjct 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 Query 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA Sbjct 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 Query 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL Sbjct 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 Query 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA Sbjct 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 Query 421 KQ 422 KQ Sbjct 421 KQ 422 >gi|289447026|ref|ZP_06436770.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289419984|gb|EFD17185.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=422 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/422 (99%), Positives = 421/422 (99%), Gaps = 0/422 (0%) Query 1 VAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 +AEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV Sbjct 1 MAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 Query 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA Sbjct 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 Query 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR Sbjct 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 Query 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGP ANSLMVPTD Sbjct 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPAANSLMVPTD 240 Query 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA Sbjct 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 Query 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL Sbjct 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 Query 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA Sbjct 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 Query 421 KQ 422 KQ Sbjct 421 KQ 422 >gi|340626443|ref|YP_004744895.1| hypothetical protein MCAN_14451 [Mycobacterium canettii CIPT 140010059] gi|340004633|emb|CCC43777.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=422 Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/422 (99%), Positives = 421/422 (99%), Gaps = 0/422 (0%) Query 1 VAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 +AEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV Sbjct 1 MAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 Query 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA Sbjct 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 Query 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLA TPVDVPR Sbjct 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLAGTPVDVPR 180 Query 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD Sbjct 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 Query 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA Sbjct 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 Query 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL Sbjct 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 Query 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA Sbjct 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 Query 421 KQ 422 KQ Sbjct 421 KQ 422 >gi|15840886|ref|NP_335923.1| hypothetical protein MT1472 [Mycobacterium tuberculosis CDC1551] gi|13881087|gb|AAK45737.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|323720093|gb|EGB29199.1| hypothetical protein TMMG_02131 [Mycobacterium tuberculosis CDC1551A] Length=422 Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/422 (99%), Positives = 421/422 (99%), Gaps = 0/422 (0%) Query 1 VAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 +AEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV Sbjct 1 MAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 Query 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 HYLDRDTPQSLVEAPAAALAYARAAAQRDI LSGLVRAHRLGHARFLEVAMQYVSLLEPA Sbjct 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDILLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 Query 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR Sbjct 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 Query 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD Sbjct 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 Query 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA Sbjct 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 Query 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL Sbjct 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 Query 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA Sbjct 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 Query 421 KQ 422 KQ Sbjct 421 KQ 422 >gi|339294407|gb|AEJ46518.1| hypothetical protein CCDC5079_1328 [Mycobacterium tuberculosis CCDC5079] Length=422 Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/422 (99%), Positives = 421/422 (99%), Gaps = 0/422 (0%) Query 1 VAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 +AEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV Sbjct 1 MAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 Query 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA Sbjct 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 Query 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR Sbjct 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 Query 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD Sbjct 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 Query 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRV DGLRGFRASLKQAERVKALA Sbjct 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVRDGLRGFRASLKQAERVKALA 300 Query 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL Sbjct 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 Query 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA Sbjct 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 Query 421 KQ 422 KQ Sbjct 421 KQ 422 >gi|289442874|ref|ZP_06432618.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289415793|gb|EFD13033.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] Length=422 Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/419 (99%), Positives = 419/419 (100%), Gaps = 0/419 (0%) Query 1 VAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 +AEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV Sbjct 1 MAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 Query 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA Sbjct 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 Query 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR Sbjct 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 Query 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD Sbjct 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 Query 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA Sbjct 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 Query 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL Sbjct 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 Query 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR 419 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR Sbjct 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR 419 >gi|294994990|ref|ZP_06800681.1| hypothetical protein Mtub2_10885 [Mycobacterium tuberculosis 210] Length=422 Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/422 (99%), Positives = 419/422 (99%), Gaps = 0/422 (0%) Query 1 VAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 +AEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV Sbjct 1 MAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 Query 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA Sbjct 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 Query 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLA TPVD P Sbjct 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLAITPVDDPG 180 Query 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD Sbjct 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 Query 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA Sbjct 241 EREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 Query 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL Sbjct 301 LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 Query 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA Sbjct 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 Query 421 KQ 422 KQ Sbjct 421 KQ 422 >gi|289749987|ref|ZP_06509365.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289690574|gb|EFD58003.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=423 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/423 (98%), Positives = 414/423 (98%), Gaps = 1/423 (0%) Query 1 VAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 +AEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV Sbjct 1 MAEAGGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAV 60 Query 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA Sbjct 61 HYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPA 120 Query 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR Sbjct 121 DRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPR 180 Query 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD Sbjct 181 AERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTD 240 Query 241 E-REARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKAL 299 E R F PA TR FAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKAL Sbjct 241 ETRGTGCGFWPATTRGFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKAL 300 Query 300 ALAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFL 359 ALAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFL Sbjct 301 ALAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFL 360 Query 360 LRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR 419 LRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR Sbjct 361 LRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR 420 Query 420 AKQ 422 AKQ Sbjct 421 AKQ 423 >gi|240171799|ref|ZP_04750458.1| hypothetical protein MkanA1_20965 [Mycobacterium kansasii ATCC 12478] Length=422 Score = 567 bits (1461), Expect = 1e-159, Method: Compositional matrix adjust. Identities = 310/418 (75%), Positives = 355/418 (85%), Gaps = 4/418 (0%) Query 5 GGGPISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLD 64 GG PISVIAR M IRD FI E+FD MK+EI+GLDYD+RM D+W+ASITEN+V AVHYL+ Sbjct 9 GGSPISVIARQMDTIRDQFIVEVFDTMKSEIQGLDYDSRMMDMWQASITENYVAAVHYLE 68 Query 65 RDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVS 124 RD P SL+EAP AALAYARAAAQRD+PL+ LVRAHRLGHARFLEVAM+YVSLLEPA RV Sbjct 69 RDAPTSLLEAPPAALAYARAAAQRDVPLAPLVRAHRLGHARFLEVAMRYVSLLEPAQRVP 128 Query 125 TIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERA 184 TI ELVNRS+R+VDLVADQ+IVAYE EH+RWLSR GL+QQ VSELLA TPVDV RAE+ Sbjct 129 TITELVNRSSRIVDLVADQMIVAYEEEHERWLSRHGGLRQQSVSELLAGTPVDVQRAEKL 188 Query 185 LGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREA 244 L YRLDG+H+AAVVWVD+AVP GDV+A F+QVRCL+A ELG V SL+VPTDEREA Sbjct 189 LRYRLDGMHVAAVVWVDAAVPAGDVMAVFEQVRCLVAA----ELGLVGGSLLVPTDEREA 244 Query 245 RLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGG 304 RLWFS RA PSR+RAAFESAGIRARLA G+ DGLRGFRASLKQA+ VKA+ AGG Sbjct 245 RLWFSVWDDRAGDPSRLRAAFESAGIRARLAYGQAADGLRGFRASLKQAQLVKAVVRAGG 304 Query 305 ARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRS 364 AR RV+ YDDVAP+AL+A D++ LR +V +VLG+LSVD+ERN WLRETLREFL+RNRS Sbjct 305 ARRSARVVCYDDVAPIALMAADVDALRCYVAEVLGELSVDNERNEWLRETLREFLVRNRS 364 Query 365 YVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRAKQ 422 YV TA+AM+LHRNTIQYRV QAMELC + DDPDA FRVQ+ALE+CRWMAPAVL A + Sbjct 365 YVTTAEAMLLHRNTIQYRVAQAMELCAGSFDDPDAVFRVQVALEICRWMAPAVLAAPK 422 >gi|311744357|ref|ZP_07718159.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311312323|gb|EFQ82238.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length=417 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 179/411 (44%), Positives = 247/411 (61%), Gaps = 7/411 (1%) Query 9 ISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTP 68 ++ +AR ++ +R+ FI +LFD EI LD+D R+ L ASITEN VTA++YL+R Sbjct 10 VAEVARRLRPLREPFIRDLFDLTLVEIAELDHDERLRGLLEASITENIVTALNYLERGPE 69 Query 69 QSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVSTIIE 128 ++AP AALAYAR AQR +PLS L+RA+RLGH RFL+ A+ + + ++ + Sbjct 70 PGDLDAPTAALAYARILAQRGVPLSALIRAYRLGHTRFLDAALAVLPDAVTGEPMAVVPH 129 Query 129 LVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYR 188 LV +SA +DLV D++ A+E E +RW + G+++QWV ++LAD VD+ RA ALG R Sbjct 130 LVRQSADYLDLVCDRVGRAWEAERERWTASGFGVRRQWVDQVLADRQVDLDRAAEALGLR 189 Query 189 LDGVHIAAVVWVDSAVPIGDVVAQFDQVRC-LLAGELGPELGPVANSLMVPTDEREARLW 247 D +H+A +W V GD V + Q C ++A LG P L+V TD+RE W Sbjct 190 FDALHLAVELWPTDDVADGD-VDRVVQASCDVVARHLGVRRDP----LVVRTDDREVAAW 244 Query 248 FSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARP 307 F A P + +AG ++ACGR G+ GFR S +QA RVK + A G R Sbjct 245 FEVADGVHVDPRALATELVAAGSPVQVACGRPEHGVEGFRRSHRQARRVKLVRAASG-RS 303 Query 308 GGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVA 367 V Y +VA V +LA+DL+ R V LG L+ D +R LR TLREF+LR+ S+ A Sbjct 304 EPAVTTYAEVAAVTVLAEDLDATRALVLRALGSLAEDSDRAQMLRGTLREFVLRHGSFAA 363 Query 368 TADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 TA A LHRN++QYRV QA +LC + DP AF V +ALE RW+ AVL Sbjct 364 TAAATNLHRNSVQYRVQQAKDLCALDPTDPATAFDVLVALEAARWLGRAVL 414 >gi|29827884|ref|NP_822518.1| hypothetical protein SAV_1343 [Streptomyces avermitilis MA-4680] gi|29604985|dbj|BAC69053.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length=401 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 179/406 (45%), Positives = 238/406 (59%), Gaps = 7/406 (1%) Query 16 MQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAP 75 MQ RD+FI++L +AEI L++D + L ASITEN VT++H + V+AP Sbjct 1 MQAHRDEFIAKLVATTEAEISQLEHDEPLRGLLEASITENIVTSLHVVINRIDPGTVDAP 60 Query 76 AAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVSTIIELVNRSAR 135 A+A++YAR AQRD+PLS L+RA+RLGHA+ L++ + L D T+I LV+ S+ Sbjct 61 ASAVSYARRLAQRDVPLSALLRAYRLGHAQSLDLVLGEAVRLNLPDIAGTLITLVSLSSA 120 Query 136 LVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIA 195 VD V DQ+ YE E +RW+ R L++ WV++LL + VD +AE ALGYRL G H+ Sbjct 121 YVDRVCDQIARVYEEERERWVGTRGVLRRHWVTQLLDNPRVDQRQAEAALGYRLSGSHLG 180 Query 196 AVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRA 255 W+D D A FD++ LL L P L++ TDE R+W + P Sbjct 181 VEGWLDGTAATTDPTAVFDRLASLLHTVLRAHGRP----LLIHTDEAGVRIWLAVRPDCP 236 Query 256 FAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYD 315 + A A + R+A G V GL GFR S + A R KALAL+ G R + + Sbjct 237 VDADTVAAELADAALPVRVALGSVRPGLDGFRRSTRAAARAKALALSAGP-TAPRAVAFA 295 Query 316 DVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILH 375 VAPVALL D+ EL FV+D LGDL+VDD RN LRETLR FL NRSY ATAD + +H Sbjct 296 RVAPVALLVDEPRELADFVSDTLGDLAVDDPRNEVLRETLRVFLATNRSYAATADHLTVH 355 Query 376 RNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRAK 421 RNT+ YRV +A++ +LD AF + AL VCRW VLR K Sbjct 356 RNTVHYRVQRAVDHYRLDLD--ANAFDLHFALNVCRWHGGKVLRPK 399 >gi|326332574|ref|ZP_08198842.1| hypothetical protein NBCG_04018 [Nocardioidaceae bacterium Broad-1] gi|325949575|gb|EGD41647.1| hypothetical protein NBCG_04018 [Nocardioidaceae bacterium Broad-1] Length=414 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 138/388 (36%), Positives = 207/388 (54%), Gaps = 14/388 (3%) Query 38 LDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVR 97 L D + +L RAS+ N T H L + AP AA+ YAR AQR I + LVR Sbjct 23 LGGDDVILELLRASVESNVETFFHMLQHGIATEEIGAPPAAIEYARRLAQRGISSNALVR 82 Query 98 AHRLGHARFLEVAMQYVSLLEPADRVS-TIIELVNRSA-RLVDLVADQLIVAYEHEHDRW 155 A+R+G +R L++A+ V+ EP V+ +++ R VD VA+Q++ YE E +RW Sbjct 83 AYRIGQSRVLDLAIAEVTRHEPDREVALAATQILQRGGFAYVDRVAEQVVAEYESELERW 142 Query 156 LSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQ 215 L+ R+ ++ ++ LLA + +++ AE ALGYRL H+ +VW GD A + Sbjct 143 LANRNTVRASTLASLLAGSDIELGVAENALGYRLRQHHLGLIVWDAD----GDGAACGLR 198 Query 216 VRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAFAPSRIRAAFE---SAGIRA 272 + L E+G ++G V +P D A W P ++A E + A Sbjct 199 LLESLVAEVGEQVGAVGQPFFMPQDSSHAWAWIPLGRAPRTDPLDLQAIVELVTATADGA 258 Query 273 RLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDD--VAPVALLADDLEEL 330 R+A GR + GFR S ++A R +A R G V YDD V ++LA DL+ Sbjct 259 RIAIGRPRPAVAGFRTSHEEAVRAHTVAAIANERAGA-VTVYDDPGVQVASILAHDLDGT 317 Query 331 RRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHRNTIQYRVIQAMELC 390 R+ V LG L+VDDE + LRETL FL SY+ATA+ + +H+NT++YRV +A E+ Sbjct 318 RQLVATSLGRLAVDDEPHQRLRETLLAFLGAKSSYLATAEVLHVHKNTVKYRVDKAAEVR 377 Query 391 GQNLDDPDAAFRVQMALEVCRWMAPAVL 418 G+ +D+ +++AL CRW+ AVL Sbjct 378 GRAIDEDR--LNLELALTACRWLGAAVL 403 >gi|300787003|ref|YP_003767294.1| hypothetical protein AMED_5127 [Amycolatopsis mediterranei U32] gi|299796517|gb|ADJ46892.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340528495|gb|AEK43700.1| hypothetical protein RAM_26115 [Amycolatopsis mediterranei S699] Length=421 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 141/382 (37%), Positives = 197/382 (52%), Gaps = 11/382 (2%) Query 41 DARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHR 100 D RM L AS+ +N TA+ + VE PAAA+ YAR AQR P+ L+RA+ Sbjct 44 DERMVSLLSASVYQNIETALQIFRHGIDPAGVEPPAAAVEYARRLAQRGTPVFDLIRAYD 103 Query 101 LGHARFLEVAMQ-YVSLLEPADRVSTIIELVNRSA-RLVDLVADQLIVAYEHEHDRWLSR 158 LG A L+ Q + L++ A + ++ + R A + V QL+ Y+ E DRWL Sbjct 104 LGQAAMLDFGFQECIRLVDDAALLGAMMRRLLRVAYEFITRVVRQLVGIYQDERDRWLLN 163 Query 159 RSGLQQQWVSELLADT--PVDVPRAERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQV 216 RS + V++LL P DV AE +GYRL G H+ +VW S + D ++ + V Sbjct 164 RSAARAAKVADLLDGNGEPPDVDAAEAVIGYRLRGTHVGMIVWHASEAFVDDALSLLESV 223 Query 217 RCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAFAPSRIRAAFESAGIRARLAC 276 AG + + L VP DE A +W AP + AA A R+ Sbjct 224 ----AGAVFERVRGQGRPLFVPRDEASAWVWLPLAPGATIRRDHLDAALAEAEAGVRVTV 279 Query 277 GRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTD 336 G G G+ GFR + +QA RV ALALA G RV+ + +V VAL+ DL R +V Sbjct 280 GDPGTGVAGFRDTHQQARRVHALALAAGEHCD-RVLTFREVGTVALMTSDLNAARLWVAS 338 Query 337 VLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDD 396 LG L+ DDE LRETLR FL SY A A +++H+N++QYRV +A EL + L + Sbjct 339 TLGPLAADDENGGRLRETLRVFLTTGGSYTAAAAELMMHKNSVQYRVRKAQELLPRGLGE 398 Query 397 PDAAFRVQMALEVCRWMAPAVL 418 V++AL +CR + AVL Sbjct 399 DR--LDVELALALCRRLGSAVL 418 >gi|183981598|ref|YP_001849889.1| hypothetical protein MMAR_1582 [Mycobacterium marinum M] gi|183174924|gb|ACC40034.1| conserved hypothetical protein [Mycobacterium marinum M] Length=425 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 133/398 (34%), Positives = 202/398 (51%), Gaps = 13/398 (3%) Query 24 ISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYAR 83 I ++ E+RG DA++ DL AS+ N ++ + D P VE+P AAL YAR Sbjct 34 IQGTLEREIVELRG---DAQLLDLLHASVEGNVAAVLNAIHYDIPIERVESPTAALEYAR 90 Query 84 AAAQRDIPLSGLVRAHRLGHARFLEVAMQYV--SLLEPADRVSTIIELVNRSARLVDLVA 141 AQR +P++ LVRA+RLGH LE + V + +PA + + + +D ++ Sbjct 91 RLAQRGVPVNALVRAYRLGHKEMLERIIDGVQEAGADPALSLDVFNRISEVTFNYIDWIS 150 Query 142 DQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAAVVWVD 201 Q++ AYE E DRWL RS ++ ++E+L +D R++ Y L VH+A V+W Sbjct 151 QQVVAAYEAERDRWLENRSRVRNVRIAEILDGGDIDTDAMTRSIRYPLRKVHLALVLWFP 210 Query 202 SAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAFAPSRI 261 G+ +F+++ L EL LG N+L V D W A R+ Sbjct 211 DDATDGN---EFERLERFL-DELAEHLG-TGNALFVAADRVTGWGWIPLRVNDAGLAERV 265 Query 262 RAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDD-VAPV 320 R +A G+ G+ GFR + +QA + +A GA V D+ ++ Sbjct 266 RRFVAGHTDAPHVALGQALPGVEGFRRAHRQARNAHRVGVAVGASAPAVVAVSDEGLSAA 325 Query 321 ALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHRNTIQ 380 AL+ DL E +V + LG LS D + ++ LRETLR FL SY A A+ + LH N+++ Sbjct 326 ALMGADLPEAGAWVRETLGPLSTDSDNDAVLRETLRVFLREGGSYKAAAERLHLHYNSVK 385 Query 381 YRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 YRV +A+E G+ +DD V+MAL VC+W VL Sbjct 386 YRVARAVERRGRPIDDE--RLDVEMALLVCQWFGAVVL 421 >gi|118618757|ref|YP_907089.1| hypothetical protein MUL_3452 [Mycobacterium ulcerans Agy99] gi|118570867|gb|ABL05618.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=425 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 128/397 (33%), Positives = 200/397 (51%), Gaps = 13/397 (3%) Query 24 ISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYAR 83 I ++ E+RG D ++ DL AS+ N ++ + D P VE+P AAL YAR Sbjct 34 IQGTLEREIVELRG---DVQLLDLLHASVEGNVAAVLNAIHYDIPIERVESPTAALEYAR 90 Query 84 AAAQRDIPLSGLVRAHRLGHARFLEVAMQYV--SLLEPADRVSTIIELVNRSARLVDLVA 141 AQR +P++ LVRA+RLGH LE + V + +PA + + + +D ++ Sbjct 91 RLAQRGVPVNALVRAYRLGHKEMLERIIDGVQEAGADPALSLDVFNRISEVTFNYIDWIS 150 Query 142 DQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAAVVWVD 201 Q++ AYE E DRWL RS ++ ++E+L +D +++ Y L VH+A V+W Sbjct 151 QQVVAAYEAERDRWLENRSRVRNVRIAEILDGGDIDTDAMTKSIRYPLRKVHLALVLWFP 210 Query 202 SAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAFAPSRI 261 G+ +F+++ L EL LG N+L V D W A R+ Sbjct 211 DDATDGN---EFERLERFL-DELAEHLG-TGNALFVAADRITGWGWIPLRANDAGLTGRV 265 Query 262 RAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDD-VAPV 320 R +A G+ G+ GFR + +QA + +A GA + D+ ++ Sbjct 266 RRFVAGHTDAPHVALGQALPGVEGFRRAHRQARNAHRVGVAVGASAPAVMAVSDEGLSAA 325 Query 321 ALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHRNTIQ 380 AL+ DL + +V + LG LS D + ++ LRETLR FL SY A A+ + LH N+++ Sbjct 326 ALMGADLPDAGAWVRETLGPLSTDSDNDAVLRETLRVFLREGGSYKAAAERLHLHYNSVK 385 Query 381 YRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAV 417 YRV +A+E G+ +DD V+MAL VC+W V Sbjct 386 YRVARAVERRGRPIDDE--RLDVEMALLVCQWFGAVV 420 >gi|240170379|ref|ZP_04749038.1| hypothetical protein MkanA1_13795 [Mycobacterium kansasii ATCC 12478] Length=423 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 138/417 (34%), Positives = 210/417 (51%), Gaps = 10/417 (2%) Query 9 ISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTP 68 ++ +A +Q D S++ ++ +I L +AR+ DL ASI N T +H L D Sbjct 13 VAEVAGRLQRRLADVTSQIHRALERQIPDLRREARIMDLLGASIEGNVDTMLHALQYDIA 72 Query 69 QSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVST-II 127 VEAP AAL YAR AQ +P++ LVRA+RLG R E+ + E D + +I Sbjct 73 VEHVEAPTAALEYARRLAQHGVPVNALVRAYRLGQRRMNELIFAELRATEIPDSMRVAVI 132 Query 128 ELVNRSA-RLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTP-VDVPRAERAL 185 E +N + +D ++ Q++ YE E +RWL ++ L+ V ELLA T +DV A A+ Sbjct 133 EAMNAAIFEYIDWMSQQVVAVYEDERERWLENQNALRGVRVRELLAATKSIDVDAATTAI 192 Query 186 GYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREAR 245 Y L H+ ++W G V + +++ L G LG +G A+ L V D Sbjct 193 RYPLRWHHVGLIMWSGDQ---GFDVDELPRLQRFLRG-LGESVGADASPLFVAADRSSGW 248 Query 246 LWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGA 305 W A A S++R S +A G + G+ GFR + ++A +A+AG Sbjct 249 AWLPFRAAVADAVSKVRQFALSRPDSPNVAIGNMAGGVEGFRRTHREASEAHGVAIAGDR 308 Query 306 RPGGRVMFYD-DVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRS 364 R V D ++ VA L DL R +V VLG+L+ D++ + LRETLR FL S Sbjct 309 RAATVVAAGDPGLSVVARLGGDLAGTRDWVARVLGNLARDNDNDERLRETLRVFLGCGAS 368 Query 365 YVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRAK 421 Y A + +H NT++YRV +A+ G+++ V++AL C W AVL+ K Sbjct 369 YKMAAAELNMHFNTVKYRVGRAVARRGRDIGGDR--LDVELALLACHWYGAAVLQPK 423 >gi|226362670|ref|YP_002780448.1| CdaR family transcriptional regulator [Rhodococcus opacus B4] gi|226241155|dbj|BAH51503.1| putative CdaR family transcriptional regulator [Rhodococcus opacus B4] Length=420 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 142/403 (36%), Positives = 211/403 (53%), Gaps = 18/403 (4%) Query 23 FISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYA 82 S++ + + AEI L D ++ DL RAS+ N T H L D +++APAAA+ YA Sbjct 26 LTSDITEVLYAEIPDLRADRQLFDLLRASVEGNLDTIFHTLQHDIDPDILDAPAAAMEYA 85 Query 83 RAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADR--VSTIIELVNRSARLVDLV 140 R AQ +P++ LVRA+RLG L + + + +D V + ++ + +D V Sbjct 86 RRLAQHGVPVNALVRAYRLGQTNLLGLVFEELRGAAVSDEFGVPVLQRIITVMSVYIDRV 145 Query 141 ADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAAVVWV 200 + Q++ YE E +RWL+ +SG++ V E+LA D P A L Y L H+AA++WV Sbjct 146 SQQVVEVYERERERWLAHQSGVRAVRVQEILAGN--DDPDAAAILNYVLLQRHLAAIIWV 203 Query 201 DSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAFAPSR 260 GD++A+ + +AG +G V + L V D +W P R AP Sbjct 204 PD-TDSGDMLARIEAAAHDVAG----FVGGVTDPLFVAADRVTGWVWV-PLGARTRAPRS 257 Query 261 IRAAFESAGIRA---RLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDD- 316 R E R +A G V G GFR S A+R +ALALA G R V Y + Sbjct 258 YRELGEFLTGRYPGLAMAVGEVAHGPNGFRRSHGGAQRARALALAAG-RNAPVVTSYAEP 316 Query 317 -VAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILH 375 V+ V+LL DDL R +V VLG L+ D++ + LRET++ +L N S V A + LH Sbjct 317 GVSTVSLLIDDLTATRAWVRTVLGGLATDNDNAARLRETVQVYLANNLSNVTAAKELGLH 376 Query 376 RNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 N+++YRV +A E G++ A V++AL C+W+ PAVL Sbjct 377 YNSVKYRVKRAAEERGEDFTRDRLA--VELALLACQWLGPAVL 417 >gi|302530215|ref|ZP_07282557.1| predicted protein [Streptomyces sp. AA4] gi|302439110|gb|EFL10926.1| predicted protein [Streptomyces sp. AA4] Length=456 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 131/421 (32%), Positives = 209/421 (50%), Gaps = 24/421 (5%) Query 10 SVIARHMQLIRDDFISEL-------FDKMKAEIRGLDYDARMADLWRASITENFVTAVHY 62 S A + + D ++EL +++ AE+ L DA+ A+L +++ EN V A+ Sbjct 46 STAAATLAKVADSVLAELALLRARIVEEVTAELPALAPDAQAAELLDSTVRENLVAALGV 105 Query 63 LDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADR 122 L T V AP AL +AR AQR +P++ ++RA+RLG A F + + ++ EP + Sbjct 106 LGGATEPVDVGAPPVALEFARRLAQRRVPITAMLRAYRLGQAAFQQEMIARIAA-EPVEA 164 Query 123 VSTI---IELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVP 179 EL + +D ++++++ AY+ E D WL R+ + V L+ PVD Sbjct 165 ADVAVAATELSQVAFTYIDKISEEVVEAYQLERDTWLRHRNAARLAKVQAALSGKPVDTA 224 Query 180 RAERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPT 239 E+ LGY L H+ AV+W + D + ++ LLA L ++ P L+V Sbjct 225 DVEKTLGYALSERHVGAVLWCGPELDESDRLTTLERHAALLANAL--DVAP----LVVAP 278 Query 240 DEREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKAL 299 WF P A + AA + R+A G GL GFR + +QA + +A+ Sbjct 279 HASTVWAWF---PVSALDLDAVSAALAGSPDPVRVALGDPASGLAGFRTTHQQARQAEAV 335 Query 300 A-LAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREF 358 A + RP V + P+AL+A D + +V VLG L+ DDE + +RET+ + Sbjct 336 AQMTERTRPRP-VTAAAQLGPLALVAADPSAVAGWVQSVLGALADDDEGHHRMRETVWAY 394 Query 359 LLRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 L S + A + LH+NTIQYR+ +A + G+ L + V++AL CR + PAVL Sbjct 395 LSSGSSLMVAAQELHLHKNTIQYRLRKAEQERGRPLS--EGRIDVEVALLACRLLGPAVL 452 Query 419 R 419 R Sbjct 453 R 453 >gi|333922108|ref|YP_004495689.1| hypothetical protein AS9A_4456 [Amycolicicoccus subflavus DQS3-9A1] gi|333484329|gb|AEF42889.1| hypothetical protein AS9A_4456 [Amycolicicoccus subflavus DQS3-9A1] Length=478 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 140/403 (35%), Positives = 199/403 (50%), Gaps = 28/403 (6%) Query 31 MKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARAAAQRDI 90 + A+I L DA++ DL R S+ N T ++ P S VE P AAL YAR AQR + Sbjct 88 LVAQITELRGDAQLLDLLRDSVEGNIETIFSAIEHAIPISQVEPPTAALEYARRLAQRGV 147 Query 91 PLSGLVRAHRLGHARFLEVAMQYVSLLE-PADRVSTIIELVNRSA-RLVDLVADQLIVAY 148 + LVRA+RLG L V + + + PA + E V+ + +D +++Q+I Y Sbjct 148 SANALVRAYRLGQQELLRVLLDDIRSADLPAQNKLDVFEQVSSTTFGYIDWISEQVIAVY 207 Query 149 EHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAAVVW---VDSAVP 205 ++E ++WL R+ ++ V E+L VD AL Y L H+A VVW VDSA Sbjct 208 QNEREQWLEDRNRVRALQVREVLTADAVDEDTMTTALRYPLRRFHLALVVWRPGVDSAAD 267 Query 206 IGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAFAPSRIRAAF 265 +G + +F VR +L LG N L + D W P A + + + Sbjct 268 LGH-MERF--VR-----DLAEHLGASHNPLFIAEDRLTGWAWI---PLAAKSAAAEAVSA 316 Query 266 ESAGIRAR-----LACGRVGDGLRGFRASLKQAERVKALALA----GGARPGGRVMFYD- 315 A R + LA G G GFR S QA +A+ALA G A P G V D Sbjct 317 ARAFTRGQPDPPSLALGEALPGFAGFRRSHHQALDARAVALASNTEGAADPHGVVAISDL 376 Query 316 DVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILH 375 ++ ALL D+ R +V +VLG LS D E + LR TL+ FL SY A A + LH Sbjct 377 GLSAAALLGGDVNAARVWVYEVLGPLSSDTENDERLRNTLQVFLRSGSSYKAAAGQLNLH 436 Query 376 RNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 N+++YRV +A+E G ++ V++AL +CRW AVL Sbjct 437 YNSVKYRVARAIERRGLPIEADR--LEVEIALLLCRWYRGAVL 477 >gi|226309064|ref|YP_002769024.1| CdaR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226188181|dbj|BAH36285.1| putative CdaR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=429 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 133/424 (32%), Positives = 203/424 (48%), Gaps = 31/424 (7%) Query 9 ISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTP 68 ++ +AR + D E+ M EI LD DA++ ++ AS+ N T +H L D P Sbjct 19 VAELARRLDERSADIAREMAFMMAHEIDQLDADAKLLEMLEASVQGNITTIIHVLANDIP 78 Query 69 QSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVSTIIE 128 ++ AA+ YA AQRD+P + LVRA+ +G + + +S L+ R+ T+ Sbjct 79 IDHLQPTTAAVEYALRLAQRDVPSNSLVRAYHMGQGDLMRICHDEISTLDIPARL-TLAV 137 Query 129 LVNRS---ARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERAL 185 L + S +D + + AYE E RW++ + L + LL+ T D E Sbjct 138 LKHTSDVVYSYIDWITLYVFDAYERERSRWMAAQGNLHSAAIHALLSGTNADTAAFEAET 197 Query 186 GYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREAR 245 GYRL H+A VVW + DV+ R L +LG G ++ D R Sbjct 198 GYRLGQNHVALVVW---STWDADVMGINTLDR--LVRDLGAAAGADKPPIITAIDRRTVW 252 Query 246 LWFS-----PAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 W PAP P + AA G AR+A G G G+ GF+ S +QA ++A Sbjct 253 AWLPFGRRVPAPD----PEVLAAAVPLDG-GARVAIGLPGSGVEGFKRSHEQATAAYSVA 307 Query 301 LAGGARPGGRVMFYD-DVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFL 359 V F D VA V+LL+++++ + +V +VLG L+ D + LR TL + Sbjct 308 AVPDTPQRPVVSFGDRGVAVVSLLSENIDSTKSWVWEVLGPLADDTPSAASLRTTLSVYF 367 Query 360 LRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFR----VQMALEVCRWMAP 415 S++ TA+ M LHRNT++YR+ +A L DP AA R + +AL+VC + Sbjct 368 AHGESHLHTANHMNLHRNTVKYRINKA-------LGDPVAAGRDKLDLALALQVCELLGR 420 Query 416 AVLR 419 +VLR Sbjct 421 SVLR 424 >gi|333920056|ref|YP_004493637.1| hypothetical protein AS9A_2390 [Amycolicicoccus subflavus DQS3-9A1] gi|333482277|gb|AEF40837.1| hypothetical protein AS9A_2390 [Amycolicicoccus subflavus DQS3-9A1] Length=431 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 128/401 (32%), Positives = 197/401 (50%), Gaps = 30/401 (7%) Query 29 DKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARAAAQR 88 D + EI L DA++ L ++ N T + D +E P AL YAR AQR Sbjct 39 DTLMREISELRDDAQLQQLLHDTVAANIDTVFAAIRNDISLDHIEPPTTALEYARRLAQR 98 Query 89 DIPLSGLVRAHRLGHARFLEVAMQYVS--------LLEPADRVSTIIELVNRSARLVDLV 140 D+ L+RA+R+GH L V M+ + +L+ +R++ + + R +D + Sbjct 99 DVSADALIRAYRIGHQTVLNVVMEEIRGCDFDSPLILDVIERITAL------TFRYIDWI 152 Query 141 ADQLIVAYEHEHDRWLSRRSGLQQQWVSELLA----DTPVDVPRAERALGYRLDGVHIAA 196 + QLI Y+ E DRW + R+ L+ V ELLA DT D+ A+ Y L VH+A Sbjct 153 SQQLIRVYQDERDRWQASRNSLRSSRVRELLAGGDTDTDADLDVLTSAISYPLRRVHLAI 212 Query 197 VVWVDSAVPIGDVVAQFDQVRCLL-AGELGPELGPVANSLMVPTDEREARLWFS-PAPTR 254 VVW G++ A V L +G GPE + L V D +W A R Sbjct 213 VVWCHDQQGGGELTAIERFVHKLHESGVAGPE-----SPLFVAADRLTGWVWVPVTAAAR 267 Query 255 AFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFY 314 A +R A ++ +A G+ GL GFR S +QA+ + +A A G + RV Sbjct 268 ATVQQAVRDAVDATPQAPFVAIGQPLHGLDGFRRSHQQAQLARTVAHATGQQEQ-RVTDA 326 Query 315 DDVAPV--ALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAM 372 + + LLA++ + R +V +VLG L+ E + LRETLR FL + Y + A+ + Sbjct 327 SECGVLLSGLLAENADATRSWVGEVLGPLASPTESDERLRETLRAFLRADSGYKSAAEEL 386 Query 373 ILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWM 413 +H NT++YRV +A+E G+ + D V++AL +C W+ Sbjct 387 HMHPNTVRYRVRRALERRGREISDD--RLDVEVALLLCHWL 425 >gi|260905674|ref|ZP_05913996.1| hypothetical protein BlinB_10102 [Brevibacterium linens BL2] Length=435 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 125/411 (31%), Positives = 196/411 (48%), Gaps = 34/411 (8%) Query 5 GGGPISVIARHM-QLIR---------DDFISELFDKMKAEIRGLDYDARMADLWRASITE 54 G GP V M QL R + +++ + I L + + DL ASI Sbjct 12 GPGPTHVTPEVMAQLSRISAELSPRVPELTRSVYEYLATRIAELGEEPTLLDLLSASIAG 71 Query 55 NFVTAVHYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYV 114 N T H L +E P AA YAR AQR I ++ LVRA+RLG R L+ A ++ Sbjct 72 NIETIFHALQHGIAPDNLEPPVAAYEYARRLAQRGISVNALVRAYRLGQQRLLQSAYDFI 131 Query 115 SLLE--PADRVSTIIE-LVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELL 171 + + P D + + LV+ + +D ++ ++ + YE E + WL+ R+ ++ V +++ Sbjct 132 TANDELPVDLAPAVFQRLVDEVSEYIDWMSQKVALLYEQEREAWLANRTTARESQVRDII 191 Query 172 ADTPVDVPRAERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPV 231 VD A LGY L H+A V W + P + V + + G +G Sbjct 192 KGGDVDAAAAAATLGYSLTARHVAVVAWTHHSAP--ETVDDLGRFTSAI-NAAGAAMGSP 248 Query 232 ANSLMVPTDEREARLWFSPAPTRAFAPSRIRAAFESAGIR------ARLACGRVGDGLRG 285 + L++ D+ A W + + + ES G R LA G G G Sbjct 249 RSRLIISRDQDTAWGWITVPESWEYE--------ESLGDRLDATDAVHLAFGSAHTGAEG 300 Query 286 FRASLKQAERVKALALAGGARPGGRVMFYDD--VAPVALLADDLEELRRFVTDVLGDLSV 343 FR S ++A RV+ + +AG R + +DD +A V+L++ D+E + +V VLG L+ Sbjct 301 FRLSHQEAMRVQNVCVAG--RSPAALRSHDDPGMALVSLMSTDVEAAQDWVRSVLGPLAE 358 Query 344 DDERNSWLRETLREFLLRNRSYVATADAMILHRNTIQYRVIQAMELCGQNL 394 + E N+ R TL FL + SY ATA AM +H+N+I+YRV A+ L G +L Sbjct 359 NSEANARHRSTLLTFLRHDLSYTATATAMTMHKNSIRYRVEIAVSLLGTDL 409 >gi|257056612|ref|YP_003134444.1| regulator of polyketide synthase expression [Saccharomonospora viridis DSM 43017] gi|256586484|gb|ACU97617.1| regulator of polyketide synthase expression [Saccharomonospora viridis DSM 43017] Length=441 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 129/403 (33%), Positives = 199/403 (50%), Gaps = 17/403 (4%) Query 25 SELFDKMKAEIRGLDYD---ARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAY 81 +EL D M A I G D + ++ AS+ N T +H L D P ++ AA Y Sbjct 36 TELNDSMNAAIEGAIADLANPELTEMLHASVEGNITTILHMLRNDIPIEHLQPATAATEY 95 Query 82 ARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLE-PAD-RVSTIIELVNRSARLVDL 139 A A+ + + L RA+ +G L + LL+ P++ ++ + L VD Sbjct 96 AIRLARAGVSAAPLRRAYHIGSDDLLAEIFHEIQLLDCPSELKLRLLHHLAGWLHHYVDW 155 Query 140 VADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAAVVW 199 + ++ A+E E L + + + V +L PV+ + R GYRL+ H+A V+W Sbjct 156 ITRVVLDAHEAERQTLLKQHATDIFRLVHRVLDREPVEYDQFARTAGYRLNHPHVATVLW 215 Query 200 VDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFS-PAPTRAFAP 258 + + D Q + +R L A L LG ++ L +P D A +W P T Sbjct 216 DERTLQAAD---QIEVLRSL-ATRLARVLGSSSDPLFMPVDRSTAWVWCHIPDATSPIDT 271 Query 259 SRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDD-- 316 +R+ A R A G G+ GFR +L+QA V+ +A A GA P +VM Y D Sbjct 272 ARVHEVLADAPA-VRAAMGTPVFGIEGFRRTLEQANAVRTVASASGA-PHAKVMSYGDDG 329 Query 317 VAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHR 376 +A VA+L DL RR+V D LG L++D E + LRETL F LR SYV T+ ++LHR Sbjct 330 MAVVAMLVRDLPASRRWVADTLGALALDTEPAARLRETLLTF-LRTGSYVETSKKLMLHR 388 Query 377 NTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR 419 NT++YR+ +A G+ L + +++A +C + PAVL+ Sbjct 389 NTVKYRLTKAKRERGRPLT--EGRLDLELAPHLCHVLGPAVLQ 429 >gi|229491813|ref|ZP_04385634.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229321494|gb|EEN87294.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=415 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 131/424 (31%), Positives = 201/424 (48%), Gaps = 31/424 (7%) Query 9 ISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTP 68 ++ +AR + D E+ M EI LD DA++ ++ AS+ N T +H L D P Sbjct 5 VAELARRLDERSADIAREMAFMMAHEIDQLDADAKLLEMLEASVQGNITTIIHVLANDIP 64 Query 69 QSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVSTIIE 128 ++ AA+ YA AQRD+P + LVRA+ +G + + +S L+ R+ T+ Sbjct 65 IDHLQPTTAAVEYALRLAQRDVPSNSLVRAYHMGQGDLMRICHDEISTLDIPARL-TLAV 123 Query 129 LVNRS---ARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERAL 185 L + S +D + + AYE E RW++ + L + LL+ D E Sbjct 124 LKHTSDVVYSYIDWITLYVFDAYERERSRWMAAQGNLHSAAIHALLSGANADTAAFEAET 183 Query 186 GYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREAR 245 GYRL H+A VVW + DV+ R L +LG G ++ D R Sbjct 184 GYRLGQNHVALVVW---STWDADVMGINTLDR--LVRDLGAAAGADKPPIITAIDRRTVW 238 Query 246 LWFS-----PAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALA 300 W PAP P + A G AR+A G G G+ GF+ S +QA ++A Sbjct 239 AWLPFGRRVPAPD----PEVLATAVPLDG-GARVAIGLPGSGVDGFKRSHEQATAAYSVA 293 Query 301 LAGGARPGGRVMFYD-DVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFL 359 V F D VA V+LL+++++ + +V +VLG L+ D + LR TL + Sbjct 294 AVPDTPQRPVVSFGDRGVAVVSLLSENIDSTKSWVWEVLGPLAEDTPSAASLRTTLSVYF 353 Query 360 LRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFR----VQMALEVCRWMAP 415 S++ TA+ M LHRNT++YR+ +A L DP AA R + +AL+VC + Sbjct 354 AHGESHLHTANHMNLHRNTVKYRINKA-------LGDPVAAGRDKLDLALALQVCELLGR 406 Query 416 AVLR 419 +VLR Sbjct 407 SVLR 410 >gi|326382684|ref|ZP_08204375.1| hypothetical protein SCNU_07090 [Gordonia neofelifaecis NRRL B-59395] gi|326198803|gb|EGD55986.1| hypothetical protein SCNU_07090 [Gordonia neofelifaecis NRRL B-59395] Length=417 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 134/415 (33%), Positives = 195/415 (47%), Gaps = 25/415 (6%) Query 19 IRDDFIS---ELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAP 75 +R+D + + D + I LD D + ++ AS+ N V L D P S ++ P Sbjct 16 MREDLLGLSGGITDTLAGGIDQLDDDPVLVEMLGASVHGNVTNIVDMLAGDIPLSNLQPP 75 Query 76 AAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLE-PADRVSTIIELVNRSA 134 AA+ YA AQR+IP + LVRA+ +G L+V + ++ + PA + V+ S Sbjct 76 TAAVEYALRLAQREIPSNALVRAYHMGQNYSLQVIYRIITEMNLPAQEALDLTAAVSESI 135 Query 135 -RLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVH 193 R +D + + AYE+E RW V LLA ER YRLD VH Sbjct 136 YRYIDWITGYVFEAYENERRRWAGVNGTALTTTVHNLLASPESSADEFERDTAYRLDRVH 195 Query 194 IAAVVWVDSAVPIGDVVAQFDQV--RCLLAGELGPELGPVANSLMVPTDEREARLWF--- 248 +AV+W+D G +A+ D++ R +A GP L+ P D +W Sbjct 196 QSAVLWIDDRS--GVELAELDRIARRAAVASR---SDGP---PLVTPVDRSTVWVWVPYP 247 Query 249 SPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPG 308 P P A S F+ R A G+ G GFR S +QA +A G+ G Sbjct 248 GPRPRARSAESSSGLVFDRLPTGVRAAVGQRCSGAAGFRRSHEQALAALRVASVPGSPTG 307 Query 309 GRVMFYDD--VAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYV 366 R+ YDD +A ALL D++ +V +VLGDL+ D + LRETL FL S+V Sbjct 308 ARI-GYDDPGIAVSALLGQDVDTTAAWVREVLGDLASDSPATAPLRETLAVFLATADSHV 366 Query 367 ATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRAK 421 TA + LHRNT++YRV +A+ + G D D A ++L C + VL A+ Sbjct 367 RTAARLNLHRNTVKYRVDKALSMIGAERDRLDLA----VSLTACELLGSLVLAAR 417 >gi|302529880|ref|ZP_07282222.1| predicted protein [Streptomyces sp. AA4] gi|302438775|gb|EFL10591.1| predicted protein [Streptomyces sp. AA4] Length=414 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 124/378 (33%), Positives = 182/378 (49%), Gaps = 19/378 (5%) Query 20 RDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAAL 79 R +++ F +M E R +D + L AS + N V + L P + P AA Sbjct 26 RTTELTDWFVEMIPEFR---HDETVRKLMIASTSANLVAILDMLSHSIPLDRITVPPAAA 82 Query 80 AYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADR---VSTIIELVNRSARL 136 YAR AQ ++ L L+RA+RLG RF + A++ + D + + EL R+ R Sbjct 83 EYARRFAQHELSLEALLRAYRLGEHRFEQWAIEALERQPNIDTRLALGVLAELSRRTNRY 142 Query 137 VDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAA 196 +D V + LI +E E RW SR + + +L + A++ L + + H AA Sbjct 143 IDQVIEGLIDIFETERRRWSSRTGAARAAQIRLVLDSDTLTEDAAQQLLAFPMRQWHRAA 202 Query 197 VVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAF 256 V W+ A G++ A A L E+ +L + D+R LW Sbjct 203 VAWL-PAEGAGELQA---------AARLLQEVCGRGPALTMLADDRT--LWSWTVSADRA 250 Query 257 APSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDD 316 R+R+ G RLA G G GL GFR SL++A R +A+A V+ +DD Sbjct 251 DVERLRSGVTDIGGGLRLALGAPGYGLSGFRGSLREAVRARAVA-ETNEDQSQHVVLFDD 309 Query 317 VAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHR 376 VA ALL + +++ R++ VLGDL DD LRETLR FL + SY A + LH+ Sbjct 310 VAIAALLTEQSDDVYRWIARVLGDLVADDPGTEQLRETLRVFLDTDGSYTHAAARLHLHK 369 Query 377 NTIQYRVIQAMELCGQNL 394 NT+ YRV +A ELCG+ L Sbjct 370 NTVHYRVRKAEELCGRPL 387 >gi|111020453|ref|YP_703425.1| hypothetical protein RHA1_ro03464 [Rhodococcus jostii RHA1] gi|110819983|gb|ABG95267.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=421 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 116/415 (28%), Positives = 194/415 (47%), Gaps = 13/415 (3%) Query 9 ISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTP 68 ++ +AR + + + + + EI LD D ++ +L AS+ N T VH L D P Sbjct 16 VAGVARKLDARQAEITRTMSALLAHEIDQLDEDPQLVELLEASVNGNVSTIVHVLANDIP 75 Query 69 QSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVSTII- 127 ++ AA+ YA AQRD+ + LVRA+ +G +++ VS L+ + ++ + Sbjct 76 VDHLQPTTAAVEYALRLAQRDVSSNSLVRAYHMGQDDLIKICYDEVSALQLSGPLTLAVL 135 Query 128 -ELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALG 186 + +D + + AYE E RWL R + + LL T D E Sbjct 136 KHISEVVYSYIDWITLYVFDAYEQERRRWLGARGNVHSSTIHTLLTGTGNDGSAFEAETH 195 Query 187 YRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARL 246 YRL+ H+A ++W + + A VR LA L + P+ ++ D R Sbjct 196 YRLEQTHVAMILWSTGSDTEASLNALDHYVRD-LAHHLATDSAPIVTAI----DRRTLWA 250 Query 247 WFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGAR 306 W + + AA A R A G G+ GFR S +QA ++A Sbjct 251 WLPFGRRKPILDTTELAAAMPANPGIRTAIGLPASGIAGFRRSHEQAHAAYSVATVPHT- 309 Query 307 PGGRVMFYDD--VAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRS 364 P ++ + D VA V+LLA++L+ R +V +VLG L+ + ++ + LR TL + S Sbjct 310 PARPIVGFGDRGVAVVSLLAENLDSTRAWVWEVLGPLAENTDQAATLRTTLSTYFATGES 369 Query 365 YVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR 419 ++ TA M LHRNT++YR+ +A+ G + + +AL+VC ++ P VL+ Sbjct 370 HLHTAQQMNLHRNTVKYRITKAL---GDPATGTHSKLDLALALQVCEFLGPTVLK 421 >gi|343926342|ref|ZP_08765847.1| putative CdaR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343763580|dbj|GAA12773.1| putative CdaR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=428 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 123/414 (30%), Positives = 194/414 (47%), Gaps = 21/414 (5%) Query 10 SVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQ 69 +++A+ ++ + ++EL M I LD D ++ +L AS+ N T +H L D P Sbjct 29 ALVAKMLREGESELVAELSSMMTRGIDQLDTDPKLIELLAASVHGNVSTIIHVLANDIPI 88 Query 70 SLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVST--II 127 ++ AA+ YA AQRD+P + LVRA+ +G + + V L+ S I Sbjct 89 EHLQPATAAVEYALRLAQRDVPSNSLVRAYHMGQNSMMHRCYRLVEELDLDAEASMALIR 148 Query 128 ELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGY 187 + + +D + + AYE E RWL +Q + L D E GY Sbjct 149 HISDVVFGYIDWITLYVFEAYEDERRRWLGVEGNVQSAAIHTFLDSLDADDRDFESETGY 208 Query 188 RLDGVHIAAVVWV--DSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREAR 245 RL+ H+A +VW D +G + A +L ++G + ++ D Sbjct 209 RLERRHLALIVWSADDDPRELGALTRA--------ARDLAVQIGGGGDPIVTAIDRSTVW 260 Query 246 LWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGA 305 W P R S +A R+A G G RGFR + +QA ++A G+ Sbjct 261 AWI-PLAVRGDDDSVAQATVPPG---VRVAWGLPASGARGFRRTHEQARAAYSVATTPGS 316 Query 306 RPGGRVMFYD-DVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRS 364 G V F D VA V+LLA +L+ R +V +VLG L+ D + LRETL + S Sbjct 317 SAGQVVGFGDRGVAVVSLLARELDSTRAWVHEVLGGLAEDTPNAAMLRETLSVYFATKES 376 Query 365 YVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 ++ TA+ + LHRNT++YRV +A+ ++ D D A +AL+VC ++ P VL Sbjct 377 HLHTAERLNLHRNTVKYRVGKALAEVPRDRDRLDLA----LALKVCEFLGPTVL 426 >gi|333992637|ref|YP_004525251.1| hypothetical protein JDM601_3997 [Mycobacterium sp. JDM601] gi|333488605|gb|AEF37997.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=423 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 119/387 (31%), Positives = 193/387 (50%), Gaps = 17/387 (4%) Query 38 LDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVR 97 L D+ + L ++ N T + + P + + APA AL +AR AQR +P++ LVR Sbjct 40 LITDSSLLQLLHETVAANVDTYFSAIRHNIPVAEIAAPAVALEHARRLAQRGVPMNALVR 99 Query 98 AHRLGHARFLEVAMQYV--SLLEPADRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRW 155 +RLGH+ L V ++ + + L+P R+ + E+ +D ++ Q+ Y+ E +RW Sbjct 100 GYRLGHSMALRVVLEEIRSAELDPDLRLDVLSEMSTLMFGYIDEMSQQVSAVYQAERERW 159 Query 156 LSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQ 215 L R+ ++ V E+LAD +DV A+ Y L H+A +VW + GD + + Sbjct 160 LESRNAVRALRVREILADEGLDVDAMTTAIRYPLRRTHVALIVWYPESA--GDKLTAAEG 217 Query 216 VRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAF-APSRIRAAFESAGIRARL 274 LA + + P L +P D W A + A +IR ++A + Sbjct 218 FIKQLAESVAGQGAP----LFIPADSTTGWAWIPLASSAGHDAVEQIRGCAQTASGEPWV 273 Query 275 ACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDD--VAPVALL-ADDLEELR 331 A G G+ GFR S +QA V LA+A G RV D ++ ALL D++ R Sbjct 274 AIGDPLPGVEGFRRSHQQALAVHTLAVASGVT---RVSAAADPGLSAAALLGGDNVAAAR 330 Query 332 RFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHRNTIQYRVIQAMELCG 391 +V +VLG L+ + + LR+TLR FL S+ A + + H NT++YRV +A+E G Sbjct 331 AWVGEVLGPLARATDGDERLRDTLRVFLRAGSSFKAAGEQLHFHVNTMKYRVQRAIERRG 390 Query 392 QNLDDPDAAFRVQMALEVCRWMAPAVL 418 + + + V++AL +C+W AVL Sbjct 391 RPIAEDR--LDVEIALLLCQWYGAAVL 415 >gi|145225199|ref|YP_001135877.1| hypothetical protein Mflv_4621 [Mycobacterium gilvum PYR-GCK] gi|145217685|gb|ABP47089.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=430 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 121/422 (29%), Positives = 206/422 (49%), Gaps = 29/422 (6%) Query 17 QLIRD--DFISELFDKMKA----EIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQS 70 L RD D + EL + + ++ L D ++ +L ++ N T + P Sbjct 17 HLFRDLGDLVRELPESIHGLLIEQVAELAADQQLKELLSDTVAANVDTWFSVVRHSIPFD 76 Query 71 LVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLE--VAMQYVSLLEPADRVSTIIE 128 +E+P AAL +AR AQR++P++ L+RA+RLGH L +A + L P ++++ I Sbjct 77 RMESPTAALEHARRMAQREVPVNALLRAYRLGHQYGLNLIIAGLRSADLPPEEKLALIEH 136 Query 129 LVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYR 188 + S R +D +++Q++ Y+ E W RR L+ Q + ++L VD+ A A+ Y Sbjct 137 ITRVSFRYIDWMSEQVLETYQTERAEWDERRRSLRAQAIRDILNGRDVDLTEASSAMRYF 196 Query 189 LDGVHIAAVVWVD--SAVPIGDVVA--QFDQVRCLLAGELGPELGPVANSLMVPTDEREA 244 L H+A +VW+D + + +A +F Q G S+ D Sbjct 197 LGATHVALMVWLDRDAGADTDEFIAMERFMQHAVSATG--------AKQSVYFSIDRLVG 248 Query 245 RLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGG 304 W + + S++R + RL+ G G+ GFR + +QAE+ + +A+A Sbjct 249 CAWMTVHRPSDYL-SQLRDFVRAQPDGPRLSVGEPLPGIEGFRRTYRQAEQARVVAVAAD 307 Query 305 ARPGGRVMFYDD--VAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRN 362 R++ D VA ++L D L+ ++ DVLG L+ + + LR+TLR FL Sbjct 308 GSSRHRIVAARDPGVALASMLMTDDATLKEWIHDVLGPLAQNTASDQRLRDTLRVFLRAG 367 Query 363 RSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFR--VQMALEVCRWMAPAVLRA 420 S+ A A+ + +H NT++YRV +A+E G+ P AA R V++AL +C W+ L Sbjct 368 SSFKAAANELQIHANTVKYRVNRALERRGR----PIAAERLDVEVALLMCYWLGEVALNP 423 Query 421 KQ 422 Q Sbjct 424 TQ 425 >gi|183981618|ref|YP_001849909.1| hypothetical protein MMAR_1603 [Mycobacterium marinum M] gi|183174944|gb|ACC40054.1| conserved hypothetical protein [Mycobacterium marinum M] Length=421 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 128/411 (32%), Positives = 202/411 (50%), Gaps = 27/411 (6%) Query 22 DFISELFDKMKAEIRG----LDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAA 77 D ++ L D ++AE+ L DA + L SI N T + VE P A Sbjct 23 DLMTSLVDTVEAEVVSEVGELREDALLTRLLHDSIRANIETVFSAIRHGIRIENVEPPTA 82 Query 78 ALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVSTIIELVNRSARL- 136 AL +AR AQR++ ++ LVR++RLGH L+VA V L+ +S +++ R ++ Sbjct 83 ALEHARRLAQREVSVNSLVRSYRLGHKAVLDVARGQVRALKLDQGLS--LDVFGRIEQVT 140 Query 137 ---VDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVH 193 VD + +++ Y+ EHDRW R+ L+ V E+L +DV + Y L+ +H Sbjct 141 FGYVDHITQEVVNTYQSEHDRWTENRNSLRALRVREVLDGAQLDVDAMTTEIRYPLNLIH 200 Query 194 IAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFS-PAP 252 +A V+W D +G+ +A +V + G +G A+ L +P D W Sbjct 201 LATVMWFDGPA-LGNELAIMQRV----IRQFGQSVGASASPLFIPVDRLTGWAWVPLTTD 255 Query 253 TRAFAPSRIRAAFESAGIRARLACGRVGDGL---RGFRASLKQAERVKALALAGGARPGG 309 T A + IR E A R + VGD L GFR S QA +++A+ G+ Sbjct 256 TARNAVTEIR---EFARERTDIPWIAVGDPLPHVAGFRRSHWQARDARSVAIVLGSN-AH 311 Query 310 RVMFYDD--VAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVA 367 RV D ++ LL ++E+ +V +LG L+ + + LRETLR FL S+ A Sbjct 312 RVTAAGDPGLSMAGLLGRNIEDAAAWVGQILGPLASQTDSDERLRETLRAFLRSGSSFKA 371 Query 368 TADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 A+ + LH N+++YRV +A++ G+ L D V++AL +C W AVL Sbjct 372 AAEELHLHHNSVKYRVQRAIKRRGRPLTDD--RLDVEVALLLCHWYGAAVL 420 >gi|118618745|ref|YP_907077.1| hypothetical protein MUL_3434 [Mycobacterium ulcerans Agy99] gi|118570855|gb|ABL05606.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=421 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 129/413 (32%), Positives = 202/413 (49%), Gaps = 31/413 (7%) Query 22 DFISELFDKMKAEIRG----LDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAA 77 D ++ L D ++AE+ L DA + L SI N T + VE P A Sbjct 23 DLMTSLVDTVEAEVVSEVGELREDALLTRLLHDSIRANIETVFSAIRHGIRIENVEPPTA 82 Query 78 ALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVSTIIELVNRSARL- 136 AL +AR AQR++ ++ LVR++RLGH L+VA V L+ I+++ R ++ Sbjct 83 ALEHARRLAQREVSVNSLVRSYRLGHKAVLDVARGQVRALKLDQ--GLILDVFGRIEQVT 140 Query 137 ---VDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVH 193 VD + +++ Y+ EHDRW R+ L+ V E+L +DV + Y L+ +H Sbjct 141 FGYVDHITQEVVNTYQSEHDRWTENRNSLRALRVREVLDGAQLDVDAMTTEIRYPLNLIH 200 Query 194 IAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFS-PAP 252 +A V+W D +G+ +A +V + G +G A+ L +P D W Sbjct 201 LATVMWFDGPA-LGNELAIMQRV----IRQFGQSVGASASPLFIPVDRLTGWAWVPLTTD 255 Query 253 TRAFAPSRIRAAFESAGIRARLACGRVGDGL---RGFRASLKQAERVKALALAGGARPGG 309 T A + IR E A R + VGD L GFR S QA +++A+ G+ Sbjct 256 TARNAVTEIR---EFARERTDIPWIAVGDPLPHVAGFRRSHWQARDARSVAIVLGSN-AH 311 Query 310 RVMFYDD--VAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVA 367 RV D ++ LL ++E+ +V +LG L+ + + LRETLR FL S+ A Sbjct 312 RVTAAGDPGLSMAGLLGRNIEDAAAWVGQILGPLASQTDSDERLRETLRAFLRSGSSFKA 371 Query 368 TADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFR--VQMALEVCRWMAPAVL 418 A+ + LH N+++YRV +A++ G+ P A R V++AL +C W AVL Sbjct 372 AAEELHLHHNSVKYRVQRAIKRRGR----PLTADRLDVEVALLLCHWYGAAVL 420 >gi|111024979|ref|YP_707399.1| hypothetical protein RHA1_ro08196 [Rhodococcus jostii RHA1] gi|110823958|gb|ABG99241.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=444 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 132/418 (32%), Positives = 191/418 (46%), Gaps = 29/418 (6%) Query 12 IARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSL 71 I +Q D + ++ A + LD D M D +S+T+N + L S Sbjct 28 IGERLQRETDAISHGMTAEIAAAVGELD-DRAMRDALHSSVTDNVEVMIDQLAHSKEVSD 86 Query 72 VEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLE--PADRVSTIIEL 129 + + A YA A++D+P S L RA+ +G L V ++ P ++ L Sbjct 87 LPSLPHAHRYAEELARQDVPESSLRRAYHVGSHYLLARIFDQVQEIDCPPHEQPPLYRHL 146 Query 130 VNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRL 189 + +D + Q+I Y+ E R + WV+ +L V A YRL Sbjct 147 AGWLYQYIDAITRQVIATYQEEQRSSHERAARTTFTWVNRVLEAEDVSPREFSAATKYRL 206 Query 190 DGVHIAAVVWVD----SAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREAR 245 D VH+A VWVD + DQVR +L G P L+V T REA Sbjct 207 DQVHVACRVWVDDRADQPAHTPALAPLIDQVRAMLGGRDDP--------LVVVTGRREAD 258 Query 246 LWFSPA---PTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALA 302 +WF TRAF + SAG +RLA G G G GFRAS QA + +A Sbjct 259 VWFGGVHRVDTRAF-----DSVVASAG-GSRLAFGSPGFGPAGFRASRSQAHQASRIAHV 312 Query 303 GGARPGGRVMFYDD--VAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 + P RV Y D + ++ L DDL R +V DVLG+L+VD + + R+T+R FL Sbjct 313 A-SDPTARVTSYADEGIPVISRLIDDLPATRAWVHDVLGELAVDSDAAARQRDTVRVFLE 371 Query 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 SY ATA ++LHRN+I+YR+ +A G+ + D Q+AL +CR + VL Sbjct 372 SAFSYSATASQLMLHRNSIRYRLEKASLQLGRGV--ADKPLDTQLALALCRVLGSVVL 427 >gi|40787287|gb|AAR90204.1| hypothetical protein PDK3.063 [Rhodococcus sp. DK17] Length=402 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 129/400 (33%), Positives = 186/400 (47%), Gaps = 29/400 (7%) Query 30 KMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARAAAQRD 89 ++ A + LD D M D +S+T+N + L S + + A YA A++D Sbjct 4 EIAAAVGELD-DRAMRDALHSSVTDNVEVMIDQLAHSKAVSDLPSLPHAHRYAEELARQD 62 Query 90 IPLSGLVRAHRLGHARFLEVAMQYVSLLE--PADRVSTIIELVNRSARLVDLVADQLIVA 147 +P S L RA+ +G L V ++ P ++ L + +D + Q+I Sbjct 63 VPESSLRRAYHVGSHYLLARIFDQVQEIDCPPHEQPPLYRHLAGWLYQYIDAITRQVIAT 122 Query 148 YEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAAVVWVD----SA 203 Y+ E R + WV+ +L V A YRLD VH+A VWVD Sbjct 123 YQEEQRSSHERAARTTFTWVNRVLEAEDVSPREFSAATKYRLDQVHVACRVWVDDRADQP 182 Query 204 VPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPA---PTRAFAPSR 260 + DQVR +L G P L+V T REA +WF TRAF Sbjct 183 AHTPALAPLIDQVRAMLGGRDDP--------LVVVTGRREADVWFGGVHRVDTRAF---- 230 Query 261 IRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDD--VA 318 + SAG +RLA G G G GFRAS QA + +A + P RV Y D + Sbjct 231 -DSVVASAG-GSRLAFGSPGFGPDGFRASRSQAHQASRIAHVA-SDPTARVTSYADEGIP 287 Query 319 PVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHRNT 378 ++ L DDL R +V DVLG+L+VD + + R+T+R FL SY ATA ++LHRN+ Sbjct 288 VISRLIDDLPATRAWVHDVLGELAVDSDAAARQRDTVRVFLESAFSYSATASQLMLHRNS 347 Query 379 IQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 I+YR+ +A G+ + D Q+AL +CR + VL Sbjct 348 IRYRLEKASLQLGRGV--ADKPLDTQLALALCRVLGSVVL 385 >gi|324997138|ref|ZP_08118250.1| hypothetical protein PseP1_00170 [Pseudonocardia sp. P1] Length=421 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 134/422 (32%), Positives = 192/422 (46%), Gaps = 33/422 (7%) Query 9 ISVIARHMQLIRDDFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTP 68 ++ +AR + + EL D I +D + L AS + N V V L P Sbjct 23 VATVARDIDARLPELTVELTDWFVEMIPEFRHDEAVRQLMVASTSANLVGIVDLLAHAIP 82 Query 69 QSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYV---SLLEPADRVST 125 + P AA YAR AQ ++ L L+RA+RLG RF + A+ + +P ++ Sbjct 83 VEQIAVPPAAAEYARRFAQHELSLEALLRAYRLGEHRFGQWALDSLRRGDRRDPDVVLAA 142 Query 126 IIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERAL 185 + L R+ R +D V + LI YE E RW +R + +L P+ A+ L Sbjct 143 VASLSERTNRYIDQVVEGLIDIYETERRRWSTRSGAGLAARIRMVLDTDPLSDSAADELL 202 Query 186 GYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREAR 245 G + G H AAV+W+ D LL G L V D R Sbjct 203 GLPVRGWHRAAVLWISGPTDAPDDDGLLQAGARLLHDAAG------RPPLTVLADSRTLW 256 Query 246 LWFSPAPTRAFAPSRIRAAFESAGIRARL------ACGRVGDGLRGFRASLKQAERVKAL 299 W S PT AP+ + +RAR+ A G GL GFR SL +A R +A+ Sbjct 257 AWHS-GPT---APT-----LDVELLRARMPGDVCVALGAPAAGLSGFRGSLAEAVRARAV 307 Query 300 ALAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFL 359 P V +DDVA ALL + E+LRR+V VL DL D+ +RETLR FL Sbjct 308 VENSVLTPP--VTEFDDVAIPALLTERTEDLRRWVARVLSDLDSDEPGVDQVRETLRVFL 365 Query 360 LRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR 419 SY A + LH+NT+ YRV +A +L G+ L D +V++AL +A ++LR Sbjct 366 ASGGSYTQAAGRLHLHKNTVHYRVRKAEDLRGRPLGDD--RLQVEVAL-----LAASLLR 418 Query 420 AK 421 ++ Sbjct 419 SR 420 >gi|183981345|ref|YP_001849636.1| hypothetical protein MMAR_1323 [Mycobacterium marinum M] gi|183174671|gb|ACC39781.1| conserved hypothetical protein [Mycobacterium marinum M] Length=426 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 126/405 (32%), Positives = 199/405 (50%), Gaps = 20/405 (4%) Query 25 SELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARA 84 S + ++ I L D R+ +L SI N T +H L D VEAP AL YAR Sbjct 32 SHIRRSLERTIPELGGDLRIEELLGTSIEANVDTMLHALRYDIAVERVEAPTTALEYARR 91 Query 85 AAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLE-PADRVSTIIELVNRSA-RLVDLVAD 142 AQ +P++ LVRA+RLG E+ + + P +IE ++ + +D ++ Sbjct 92 LAQHGVPVNALVRAYRLGQRLMNELIFDELRATDIPESMRVPVIEAISVAMFEYIDWMSQ 151 Query 143 QLIVAYEHEHDRWLSRRSGLQQQWVSELL-ADTPVDVPRAERALGYRLDGVHIAAVVWVD 201 Q++V YE E +RWL ++ L+ V E+L AD +D A ++ + L H+A V+W Sbjct 152 QVVVVYEDERERWLENQNSLRGVRVREILAADKEIDADAAITSVRHPLRWHHLALVMWYP 211 Query 202 SAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAFAPSRI 261 G V + +++ L ELG G A+ L V D W P RA AP R Sbjct 212 DQ---GSEVDELPRLQRFLR-ELGEAAGVDASPLFVAADPSCGWGWL---PYRA-APERA 263 Query 262 RAAFESAGIRAR-----LACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYD- 315 AA +R+R +A G G+ GFR S ++A +++ + RP + + Sbjct 264 VAAVADF-VRSRPDSPNVAIGTPASGVDGFRRSHREAAEARSVGILCDRRPPLMISAGEP 322 Query 316 DVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILH 375 ++ VA DL R +V VLG+L+ D + ++ LR+TLR +L SY A + +H Sbjct 323 GLSVVARFGGDLAGTREWVAQVLGELARDGDSDARLRDTLRVYLACGSSYKLAAQRLNMH 382 Query 376 RNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRA 420 NT++YRV +A+ G+ + V++AL VC W +VL++ Sbjct 383 FNTVKYRVGRAVARRGRAIGSDR--LDVELALLVCHWYGGSVLQS 425 >gi|118618038|ref|YP_906370.1| hypothetical protein MUL_2557 [Mycobacterium ulcerans Agy99] gi|118570148|gb|ABL04899.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=405 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 127/406 (32%), Positives = 198/406 (49%), Gaps = 21/406 (5%) Query 25 SELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARA 84 S + ++ I L D R+ +L SI N T +H L D VEAP AL YAR Sbjct 12 SHIRRSLERTIPELGGDLRIEELLGTSIEANVDTMLHALRYDIAVERVEAPTTALEYARR 71 Query 85 AAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLE-PADRVSTIIELVNRSA-RLVDLVAD 142 AQ +P++ LVRA+RLG E+ + + P +IE ++ + +D ++ Sbjct 72 LAQHGVPVNALVRAYRLGQRLMNELIFDELRATDIPESMRVPVIEAISVAMFEYIDWMSQ 131 Query 143 QLIVAYEHEHDRWLSRRSGLQQQWVSELL-ADTPVDVPRAERALGYRLDGVHIAAVVWVD 201 Q++V YE E +RWL ++ L+ V E L AD +D A ++ + L H A V+W Sbjct 132 QVVV-YEDERERWLENQNSLRGVRVRETLAADKEIDADAAITSVRHPLRWHHPALVMWYP 190 Query 202 SAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAFAPSRI 261 G V + +++ L ELG G A+ L V D W P RA AP R Sbjct 191 DQ---GSEVDELPRLQRFLR-ELGEAAGVDASPLFVAADPSCGWGWL---PYRA-APERA 242 Query 262 RAAFESAGIRAR-----LACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYD- 315 AA +R+R +A G G+ GFR S ++A +++ + RP + + Sbjct 243 VAAVADF-VRSRPDSPNVAIGTPASGVDGFRRSHREAAEARSVGILCDRRPPLMISAGEP 301 Query 316 DVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILH 375 ++ VA DL R +V VLG+L+ D + ++ LR+TLR +L SY A + +H Sbjct 302 GLSVVARFGGDLAGTREWVAQVLGELARDGDSDARLRDTLRVYLACGSSYKLAAQRLNMH 361 Query 376 RNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLRAK 421 NT++YRV +A+ G+ + V++AL VC W +VL++K Sbjct 362 FNTVKYRVGRAVARRGRAIGSD--RLDVELALLVCHWYGGSVLQSK 405 >gi|296140551|ref|YP_003647794.1| PucR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028685|gb|ADG79455.1| putative transcriptional regulator, PucR family [Tsukamurella paurometabola DSM 20162] Length=421 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 129/387 (34%), Positives = 185/387 (48%), Gaps = 22/387 (5%) Query 31 MKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARAAAQRDI 90 M AEI L D + AS+ N T +H + +EAP AA+ Y R AQR + Sbjct 39 MLAEIPELRADHALDMALAASVAGNVDTVLHGMMLGVEPGRIEAPLAAMEYPRRLAQRGL 98 Query 91 PLSGLVRAHRLGHARFLEVAMQYV--SLLEPADRVSTIIELVNRSARLVDLVADQLIVAY 148 P++ LVRA+RLG A + V + L +++ + + S D V + +I AY Sbjct 99 PVTALVRAYRLGQASMVRQMHDAVRATGLTVEQKLAAHEWITDWSFAYSDTVIETVITAY 158 Query 149 EHEHDRWLSRRSGLQQQWVSELLA-DTPVDVPRAERALGYRLDGVHIAAVV-WVDSAVPI 206 + E DRW+ RSG + V ELLA D VD A A+GY L H+A + + DS Sbjct 159 QRERDRWMQARSGARVARVRELLAHDGVVDADAASLAIGYPLRRSHLALIASYSDS---- 214 Query 207 GDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPA-PTRAFAPSRIRAAF 265 D D+V + EL +GPV L++ D+R W P A +R R A Sbjct 215 -DDTDGPDRVEVFVR-ELAAAVGPVEAPLLLAADQRTVWGWLPVGDPVEAVDRAR-RHAA 271 Query 266 ESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVMFYDD--VAPVALL 323 S+G R+A G V G+ GFR S +A + A V+F D V AL+ Sbjct 272 ASSGDGPRVAFGAVRPGIEGFRRSHTEAAAARRTAGER------PVVFAGDPGVMVAALV 325 Query 324 ADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHRNTIQYRV 383 D +R+ DVLG L+ D E ++ LR TL +L Y A A + LH N+++YRV Sbjct 326 GTDPGAAQRWARDVLGPLAEDTEADARLRRTLAVYLRHGGGYKAAAAELTLHPNSVKYRV 385 Query 384 IQAMELCGQNLDDPDAAFRVQMALEVC 410 +A+E G+ + V++AL VC Sbjct 386 QRALERRGRGIGADR--LDVEVALLVC 410 >gi|240170688|ref|ZP_04749347.1| hypothetical protein MkanA1_15340 [Mycobacterium kansasii ATCC 12478] Length=434 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 102/336 (31%), Positives = 156/336 (47%), Gaps = 25/336 (7%) Query 72 VEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRVSTIIELVN 131 VE PA LA ARA R IPL+ L+R +RL + ++ DR + Sbjct 84 VELPAPTLAIARAGVVRQIPLANLMRFYRLAQTLLWQWMWDRITAAA-TDRAQQALAFRL 142 Query 132 RSARL---VDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYR 188 ++ + VD ++ AYE E + WL + + + ++L D RA + L Y Sbjct 143 ATSWMFGYVDAALNRAEQAYEAEREIWLRNTAAARTDAIDDILTQRERDPQRASKRLRYD 202 Query 189 LDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWF 248 ++ H+ + WVDSA D + ++ LA E+ + +L+ P A WF Sbjct 203 VNRHHVGVIAWVDSAPEHRDAQSSLNEALTTLAREMRAD-----TTLIHPGGSLVAFGWF 257 Query 249 SPAPTRAFAPSRIRAAFESAGIRAR---------LACGRVGDGLRGFRASLKQAERVKAL 299 S + + A F++ G+ R + G G GL+GFR S +A + + Sbjct 258 S------WRSAIGTAGFDTTGVSTRRPTLPDGVRVGIGEPGHGLKGFRCSHIEASNARRV 311 Query 300 ALAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFL 359 A GAR G + Y DVA AL + D E FV VLG L+ DDE + TL +L Sbjct 312 ASLAGAR-AGTLTHYRDVAVAALASCDAEHAASFVHRVLGPLAADDEATYRVATTLSVYL 370 Query 360 LRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLD 395 NRS + TA + +H NT+ YRV QA ++ G+++D Sbjct 371 QENRSRLRTAQRLTVHPNTVSYRVDQAEKILGRSID 406 >gi|54025185|ref|YP_119427.1| hypothetical protein nfa32160 [Nocardia farcinica IFM 10152] gi|54016693|dbj|BAD58063.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=414 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 123/398 (31%), Positives = 179/398 (45%), Gaps = 32/398 (8%) Query 22 DFISELFDKMKAEIRGLDYDARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAY 81 D ++ +F +M E R +D + L AS N + L V P AA Y Sbjct 29 DEMTGMFVEMIPEFR---HDDEVRRLMVASTGGNLSAIMDLLALSISFDEVSVPPAAAEY 85 Query 82 ARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEPADRV-----STIIELVNRSARL 136 AR AQ + L LVRA+RLG FL+ A+ + L P+ + S I E+VNR Sbjct 86 ARRFAQHGMSLEALVRAYRLGEHMFLQRAITALGELGPSAELALATTSHIAEMVNR---Y 142 Query 137 VDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAA 196 +D V + +I YE+E RW +R + V +L +D+ AE+ LG L G H+AA Sbjct 143 IDRVLEGVIDIYENERQRWDARSDATRAAQVRAVLDGEGLDLASAEQMLGTSLRGWHLAA 202 Query 197 VVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANS---LMVPTDEREARLWFSPAPT 253 ++W D + + G EL A L + DE W S A Sbjct 203 IIWTPPGTAASDTLLRA-----------GVELLSAATGKRPLTILVDEHNCWAWISSAGK 251 Query 254 RAFAPSRIRAAFE-SAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGGRVM 312 + A+ G+R +A G GL GFR + + A A+A A + Sbjct 252 PVLDVDALEASLRRHPGLR--MAVGERDSGLAGFRRTF--LDASAARAVAVAAPRVRELT 307 Query 313 FYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAM 372 Y V+ +LL D L E++ + VLGDL DDE + LR+T + +L S A M Sbjct 308 LYSRVSVASLLLDRLPEVKAWAQRVLGDLMRDDESTARLRDTAQVYLDARGSLTDAAARM 367 Query 373 ILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVC 410 +H+NT+ YRV +A EL G +L +++AL VC Sbjct 368 HVHKNTVHYRVRKAEELLGHSLTVNR--LELELALLVC 403 >gi|290955996|ref|YP_003487178.1| hypothetical protein SCAB_14641 [Streptomyces scabiei 87.22] gi|260645522|emb|CBG68612.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length=413 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 110/359 (31%), Positives = 165/359 (46%), Gaps = 20/359 (5%) Query 63 LDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYV-SLLEPAD 121 L DTP V P AL R + R + L ++ A + H E ++++ L P + Sbjct 67 LHADTPGEAVATPQLALDGNRDSVHRGVALDRVLHAMWISHVHHYERLLEFLDQTLPPHE 126 Query 122 RVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRA 181 T+ + S V+ + Y E + WL + ++Q + +++A P+ V Sbjct 127 LAGTVRRVTELSFAYVEAFTARFSAEYTAEREAWLGSLAATRRQVIEDIIAGVPISVRDP 186 Query 182 ERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCL--LAGELGPELGPVANSLMVPT 239 E LG L H AAV+W + A D L LAG L + L+V Sbjct 187 ELVLGLDLSRHHRAAVLWTEDD-------AGTDSAHTLHRLAGRLA-DAADAGRPLVVRP 238 Query 240 DEREARLWFS-PAPTRAFAPSRIRAAFESA-GIRARLACGRVGDGLRGFRASLKQAERVK 297 LW S AP R+R A ++ GIRA A G + G+ GFR S A V+ Sbjct 239 GGTSLWLWMSWAAPPEQRLAERLRGAVDAPHGIRA--ALGPLDAGIDGFRRSHLGALEVR 296 Query 298 ALALAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLRE 357 +A A R + +D++ +ALL + E R FV LG L+ DD+R++ LRETLR Sbjct 297 RVA-AASTRRSSWLADHDELEVIALLTANPEHARWFVHRQLGALATDDDRSAELRETLRL 355 Query 358 FLLRNRSYVATADAMILHRNTIQYRVIQAMELCGQNL-DDPDAAFRVQMALEVCRWMAP 415 +L RS A A + + NT+ YRV QA + G +L DP R+ +ALE+ ++ P Sbjct 356 YLAFERSRTAAAQVLHVAPNTVGYRVRQAEAILGTDLAKDP---LRIGLALEIYDYLNP 411 >gi|345013629|ref|YP_004815983.1| putative PucR family transcriptional regulator [Streptomyces violaceusniger Tu 4113] gi|344039978|gb|AEM85703.1| putative transcriptional regulator, PucR family [Streptomyces violaceusniger Tu 4113] Length=457 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 112/341 (33%), Positives = 152/341 (45%), Gaps = 36/341 (10%) Query 87 QRDIPLSGLVRAHRLGHARFLEVAMQYVS-LLEPADRVSTIIELVNRSARLVDLVADQLI 145 R +PL ++ R+GHA E ++ + L++P V + + VD ++D +I Sbjct 116 HRAVPLERVLHGVRIGHAATTEAFLRACAELVDPEAAVDEVTAISRELFSYVDDLSDTMI 175 Query 146 VAYEHEHDRWLSRRSGLQQQWVSELLAD---TPVDVPRAERALGYRLDGVHIAAVVWVDS 202 AY EH+ W + + + V LL+D T DV A RALGY L H A VVW D Sbjct 176 RAYLVEHEVWSTSAAAARADIVRSLLSDATATATDVGEASRALGYDLRRTHEAVVVWSD- 234 Query 203 AVPIGDVVAQFDQVRCLLA-GELGPELGPVANSLM-----VPTD-------EREARLWFS 249 VP G Q L A G + PVA+ + VP+D R W + Sbjct 235 -VPNGSSTLQAVATEALRARGATTTLVVPVASGRLWAWGTVPSDGTVTSDGTRRTGSWET 293 Query 250 PAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQA---ERVKALALAGGAR 306 A A A R +AAF G G G+ GFR S ++A ERV+ L G Sbjct 294 IA--EALARQRTQAAF-----------GTPGGGVEGFRRSHREARRGERVERLRREAGRV 340 Query 307 PGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYV 366 P Y DVA +ALLA DL+ FV LG L+ LR TL ++ RS Sbjct 341 PR-HATAYADVAAIALLATDLDAAGDFVRRELGGLAARSASMEALRTTLYHYIGAERSLA 399 Query 367 ATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMAL 407 A + + R T+ YRV +A E+ G LDD A +AL Sbjct 400 DVARRLHVARGTVTYRVKRAQEVLGHGLDDRRFALHTALAL 440 >gi|240170335|ref|ZP_04748994.1| hypothetical protein MkanA1_13565 [Mycobacterium kansasii ATCC 12478] Length=415 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 120/406 (30%), Positives = 178/406 (44%), Gaps = 27/406 (6%) Query 21 DDFISELFDKMKAEIRG-LDYDARMADLWRASITENFVTAVHYLDR-DTPQSLVEAPAAA 78 D ++E+ D EI + DA +A AS N V + L R D + + P A Sbjct 26 DHLVAEM-DAAVVEIAPVMGADAAIAAEMSASNRANAVRLLTALARRDGRGAPADVPPEA 84 Query 79 LAYARAAAQRDIPLSGLVRAHRLGH----ARFLEVAMQYVSLLEPADRVSTIIELVNRSA 134 L R +R I L + +A+R G RF+ A Q V+ P + ++E+ ++ Sbjct 85 LDVVRTVVRRGIDLDVIFQAYRRGQNVAWQRFMVYAAQVVA---PGPELVALLEVTSQLM 141 Query 135 -RLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGVH 193 VD V ++I +HE + L + + V +L P+D RA LGY LD H Sbjct 142 FSYVDQVIGRVIADAQHEREELLGGAMARRTETVRLILDGAPIDRRRASERLGYELDRRH 201 Query 194 IAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSPAPT 253 A V+W + P G++ + LLA L +P+ W T Sbjct 202 TALVLWAE---PRGEIQGVLESAATLLARAAR-----ARPPLTLPSGTATLWAWLGTNAT 253 Query 254 RAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPGG-RVM 312 A +R A SA R+A G G+ GFR S A ++ L G PGG R+ Sbjct 254 PAM--DALRDAIRSADPTVRVAVGPTQPGITGFRRSHAAALVIQRLL---GGHPGGERIA 308 Query 313 FYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVATADAM 372 F+ D+ AL A + ++ FV LG L+ D + LRETLR FL + + Sbjct 309 FHRDLEVTALAAQNQDQAAEFVATTLGPLAADTPGAARLRETLRVFLDEAENAPRAGIRL 368 Query 373 ILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVL 418 HRNT+ RV +A EL G + + A V++ALE+ + P VL Sbjct 369 HTHRNTVLQRVARATELLGHHPGERRLA--VELALELTHHIGPRVL 412 >gi|111017753|ref|YP_700725.1| hypothetical protein RHA1_ro00732 [Rhodococcus jostii RHA1] gi|110817283|gb|ABG92567.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=397 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 111/385 (29%), Positives = 165/385 (43%), Gaps = 18/385 (4%) Query 41 DARMADLWRASITENFVTAVHYLDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHR 100 DA + L S + N + + + EAP AL +ARA A R + ++R +R Sbjct 26 DAELRGLTLGSCSSNLEAVLSMVRHGIDVAAAEAPVTALEHARAMASRGHSVDVMLRFYR 85 Query 101 LGHARFLEVAMQYVS--LLEPADRVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSR 158 LGH F E ++ + +PA + T I+L R +D ++ + Y E DR ++ Sbjct 86 LGHEYFTEKLSDSLTDWIEDPAVALRTFIDLERFGFRYIDRISSLVAAEYVAELDRRQNQ 145 Query 159 RSGLQQQWVSELLADTPVDVPRAERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRC 218 + V LLA VD+ RAER L +R G I V WVD G + F Sbjct 146 ARAERADLVRALLAGERVDIARAERVLSHRFTGRQIGFVCWVDDR---GVDLEGF----- 197 Query 219 LLAGELGPELGPVANSLMVPTDEREARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGR 278 A ++G LG +SL+V W S + + + F +A G Sbjct 198 --ARQVGRFLG-AGHSLVVADGPLAVWGWASITGDVRTSLTGMATEFPGERENVHIAVGS 254 Query 279 VGDGLRGFRASLKQAERV-KALALAGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDV 337 G GFR S +A R + + L+G A P + + DVA V ++ DL+ R FV Sbjct 255 PHPGAAGFRTSHLEALRTRRIIELSGRAAPS--ITQFSDVALVDAISRDLDAARAFVAAQ 312 Query 338 LGDLSVDDERNSWLRETLREFLLRNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDDP 397 LG L+ DD + R L L S A + +HRNT+ RV +A E G+ Sbjct 313 LGALARDDAKERSERAALLAVLDAQGSLATAASTLGIHRNTVLQRVRRAEERRGRPATIN 372 Query 398 DAAFRVQMALEVCRWMAPAVLRAKQ 422 A + AL VC + +VL + Sbjct 373 IA--ELHAALTVCNVLGASVLHGSE 395 >gi|54022358|ref|YP_116600.1| hypothetical protein nfa3940 [Nocardia farcinica IFM 10152] gi|54013866|dbj|BAD55236.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=431 Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 102/331 (31%), Positives = 149/331 (46%), Gaps = 19/331 (5%) Query 75 PAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLE-PAD-RVSTIIELVNR 132 PA A A+AR A+R L L+R + G L+ V E PA+ + ++ + +R Sbjct 86 PAEAHAFARTIARRGFDLRVLLRTYHAGMEAVLDYMNDAVGQREVPAEIERAVMLRMFDR 145 Query 133 SARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRLDGV 192 + + + L + L Y E +R L + + V LLA +D +A LGYRL Sbjct 146 TTKWISLSVELLTDTYMEERERVLRAALNRRTETVHALLAGEELDADQASVRLGYRLGLH 205 Query 193 HIAAVVWVDSAVPIGD--VVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWFSP 250 H+A V+W D P GD V D+V +A ELG L V + W Sbjct 206 HLAFVLWTDRIEPGGDAEVTGLLDRVAARVAAELGTN-----RLLTVASGASGMWAWAGL 260 Query 251 APTRAFA----PSRIRAAFESAGIRA--RLACGRVGDGLRGFRASLKQAERVKALALAGG 304 A P RI + I A R+A G G + GFR ++A + +A GG Sbjct 261 DDAAHAADLAAPGRIEQVLDGQ-IEAPVRIAFGVPGARVAGFRDGHREAMAARQVAERGG 319 Query 305 ARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRS 364 R RV+ Y DV L D + + LG L+ D LR+TL +L R RS Sbjct 320 GR---RVVAYRDVEIAYLAGVDQHAMWGLIRRELGALAGTDPATVRLRDTLHVYLSRQRS 376 Query 365 YVATADAMILHRNTIQYRVIQAMELCGQNLD 395 ATA A+ +H+NT++YR+ + EL G ++ Sbjct 377 PEATAKALGVHKNTVRYRLQRIEELLGHPVE 407 >gi|111025737|ref|YP_708157.1| hypothetical protein RHA1_ro08955 [Rhodococcus jostii RHA1] gi|110824716|gb|ABG99999.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=425 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 94/336 (28%), Positives = 156/336 (47%), Gaps = 25/336 (7%) Query 67 TPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLE----VAMQYVSLLEPADR 122 +P S V+ P AL +A A + +PL ++R ++LG +L V ++ + + AD Sbjct 87 SPGSEVQPPREALDFADEAVVQQVPLVAVLRGYQLGMQHWLRWCAPVIARHTNPVVQADE 146 Query 123 VSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAE 182 + + V R +D +++ +I YE E R + + + V +LA V+V Sbjct 147 LQLAVSAV---VRYIDRLSEIMIAEYERELQRRATSGASRRAALVRAVLAGDVVNVDDTA 203 Query 183 RALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDER 242 L Y L G H+A + + D Q D + A +G L + T Sbjct 204 HLLHYPLAGRHMALALHSRA-----DSTNQVDVLEAA-ARSFATSVG-ATGLLTIATGLA 256 Query 243 EARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALA 302 W + + +R R + G G+ GF S +QA ++AL + Sbjct 257 TMDAWVAVKADGGRPTNPMRE-------RVTIGVGTPLTGVAGFVQSHRQA--LRALEIL 307 Query 303 GGARPGGR--VMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLL 360 A PG + +YD V ++L+A D+ +++ FVT LG L+ DER+ LRETL FL Sbjct 308 HMAAPGKLDPITYYDRVRLISLVAKDIPDVQTFVTATLGGLAGRDERSHELRETLLAFLE 367 Query 361 RNRSYVATADAMILHRNTIQYRVIQAMELCGQNLDD 396 N+SY A + + LH+NT+ RV +A EL G+++ + Sbjct 368 ANKSYTAVSLSSHLHKNTVVQRVKRASELTGRDITN 403 >gi|226309082|ref|YP_002769042.1| CdaR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226188199|dbj|BAH36303.1| putative CdaR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=410 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 90/327 (28%), Positives = 156/327 (48%), Gaps = 16/327 (4%) Query 72 VEAPAAALAYARAAAQRDIPLSGLVR---AHRLGHARFLEVAMQYVSLLEPADRVSTIIE 128 V PA ++A A A+R + L L++ A RL F++ +++ + + P + + ++ Sbjct 73 VTPPAESVALALTVARRGMDLRVLLKIYGAGRLAMLGFVDESIEALPI-GPELKRALLVR 131 Query 129 LVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYR 188 + + R +++ + L+ Y E + + + V ++A + A R L Y Sbjct 132 VWGSAMRWLEVTTELLVATYAKERESLARGAFARRSETVHAIVAGEALHSDEASRILDYP 191 Query 189 LDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLWF 248 + H A V+W D P DV+A+ D E E L +P+ RE W Sbjct 192 MRRHHTAFVLWTDDTDPAADVLARLDSYARTFVDESNGE-----RVLTLPSGARELWSWV 246 Query 249 SPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARPG 308 + + +A S + A R+A G G G+ GF S ++A + +A+ G PG Sbjct 247 AHFDGQEWA-SHVDARHSDL----RVAVGASGYGMEGFARSHREALAAQRVAVRSGGSPG 301 Query 309 GRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYVAT 368 + Y+DV LL +DL ELR V L L+ D + +R+T+R + N + AT Sbjct 302 --ITVYEDVQVPCLLTEDLGELRELVARELKGLAGADGVTTRIRDTVRVYYENNCTAAAT 359 Query 369 ADAMILHRNTIQYRVIQAMELCGQNLD 395 A A+ LH+NT++YR+ QA +L G+++D Sbjct 360 AAALGLHKNTVRYRLDQAEKLLGRSVD 386 >gi|333920275|ref|YP_004493856.1| hypothetical protein AS9A_2609 [Amycolicicoccus subflavus DQS3-9A1] gi|333482496|gb|AEF41056.1| hypothetical protein AS9A_2609 [Amycolicicoccus subflavus DQS3-9A1] Length=414 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 94/332 (29%), Positives = 151/332 (46%), Gaps = 16/332 (4%) Query 67 TPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLL--EPADRVS 124 TP + + P A+A AR A+R + + L++ + G L + + V + +P +++ Sbjct 70 TPSAEYQPPPEAVALARTVARRGMDVQILLKIYGTGRTTALTLLNEIVQEIPVDPELKLA 129 Query 125 TIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERA 184 I++L + R ++L D L+ Y E + + + + V LL + V A Sbjct 130 AIVDLWGLAMRWLELSTDVLLSTYTTEREALMRGALARRAETVHSLLRGEKLPVDDASAQ 189 Query 185 LGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREA 244 L Y L H A V+W D P D++ Q + ++A LG + +L V + R Sbjct 190 LDYPLRRYHTAVVLWTDQEEPGTDILPQLETAAQVVARALG-----ASRALTVASGARGL 244 Query 245 RLWFSPAPTRAFAPSRIRAAFESAGIRARL--ACGRVGDGLRGFRASLKQAERVKALALA 302 W + P A SA A L A G G+ GF AS ++A +A A Sbjct 245 WAWIATIEL----PDLDELALISAW-PAHLGGAVGTPIRGVAGFVASHREAIAANRVATA 299 Query 303 GGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRN 362 P R YD+V L+ D + LR FV LG+L+ DD+ + LRETL + + Sbjct 300 RSGSP--RFTRYDEVQIPYLMGLDRDALRTFVQRELGELASDDDSAARLRETLLAYFVSG 357 Query 363 RSYVATADAMILHRNTIQYRVIQAMELCGQNL 394 S A + +H+NT++YRV QA + G +L Sbjct 358 SSPARAARQLQVHKNTVRYRVEQAQAVLGDSL 389 >gi|111020067|ref|YP_703039.1| hypothetical protein RHA1_ro03078 [Rhodococcus jostii RHA1] gi|110819597|gb|ABG94881.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=414 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 99/353 (29%), Positives = 162/353 (46%), Gaps = 18/353 (5%) Query 72 VEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVS--LLEPADRVSTIIEL 129 V+ P AA AR A+R + L L++ +R+G L A + S + +P +I L Sbjct 74 VDLPPAAHGLARTIARRGLHLRVLMQIYRVGQKALLRFAAETASERITDPVLEPKVLIRL 133 Query 130 VNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRAERALGYRL 189 + R+ +++ + L Y E +R LS Q + V ++ D A L Y L Sbjct 134 LERANHWLNVSLEVLADTYSEERERGLSGAFARQAETVQAIIRGEIADTVAASNRLNYPL 193 Query 190 DGVHIAAVVWVD--SAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDEREARLW 247 + A V+W++ + D + D +A ++G L VP+ R W Sbjct 194 LVHNTALVLWLEDTQSNQAEDEIGVLDSAARTVAAKIGAR-----QMLTVPSGSRGLWAW 248 Query 248 FSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALALAGGARP 307 + I AGIR +A G G G++GFR S +A + ++ +RP Sbjct 249 LAAEVEPDLTALDIGPGI-PAGIR--IAIGNPGKGIQGFRQSHIEAIAAQRIS---ESRP 302 Query 308 G-GRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLRNRSYV 366 +++ Y DV V LL + R V+ L L D ++ LR TLR +L NRS Sbjct 303 AETQLICYADVEIVHLLDGHPDAARALVSRELRGLDGTDAASAMLRRTLRGYLTVNRSPD 362 Query 367 ATADAMILHRNTIQYRVIQAMELCGQNLDDPDAAFRVQMALEVCRWMAPAVLR 419 A A A+ +H+NT++YR+ +A EL G+ + P+ ++++ALE P VL+ Sbjct 363 AAARALGVHKNTVRYRIQRAEELLGRPV-GPN-RLKLELALEYADTYGPVVLK 413 >gi|296394810|ref|YP_003659694.1| PucR family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181957|gb|ADG98863.1| putative transcriptional regulator, PucR family [Segniliparus rotundus DSM 44985] Length=431 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 98/330 (30%), Positives = 146/330 (45%), Gaps = 14/330 (4%) Query 63 LDRDTPQSLVEAPAAALAYARAAAQRDIPLSGLVRAHRLGHARFLEVAMQYVSLLEP-AD 121 L RDT + AP LA R I + ++R+ L HA EV + V + P A Sbjct 87 LARDTEVTSATAPEV-LAGPVELVARGIGVEHMLRSIHLAHAAAAEVLIDAVGRIVPQAR 145 Query 122 RVSTIIELVNRSARLVDLVADQLIVAYEHEHDRWLSRRSGLQQQWVSELLADTPVDVPRA 181 R + + +VD++ + + + H+ W + + ++ + V ++L V + RA Sbjct 146 RFDETRRINDFLFHIVDIMNTHMSMEFARAHEAWSTSSNAMRMEVVEDILRGADVPLGRA 205 Query 182 ERALGYRLDGVHIAAVVWVDSAVPIGDVVAQFDQVRCLLAGELGPELGPVANSLMVPTDE 241 R LGY L H+A + W P A+ Q+R A L L + Sbjct 206 VRVLGYDLSRWHLAVIAWTGGPAP-----AEPKQLREAAAAALAAAGCASTAVLSLGAQ- 259 Query 242 REARLWFSPAPTRAFAPSRIRAAFESAGIRARLACGRVGDGLRGFRASLKQAERVKALAL 301 R+W + T S G+R LA G G G+ GFR S QA R + + Sbjct 260 ---RVWAWGSRTAQPPMPNEEPPPISPGVR--LATGLPGFGVDGFRRSHDQASRAARVGV 314 Query 302 AGGARPGGRVMFYDDVAPVALLADDLEELRRFVTDVLGDLSVDDERNSWLRETLREFLLR 361 AR Y DV VA+L+ DL FV LG+L+ E + LR TL+ +L R Sbjct 315 MSTARDTW-FFPYGDVDIVAMLSADLPVAGEFVVRELGELAGPGESTAVLRHTLKCYLDR 373 Query 362 NRSYVATADAMILHRNTIQYRVIQAMELCG 391 +RS TAD + + RNT+ YRV +A +L G Sbjct 374 DRSLARTADCLHVARNTVAYRVRRAEQLRG 403 Lambda K H 0.324 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 856034544960 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40