BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1431

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608569|ref|NP_215947.1|  hypothetical protein Rv1431 [Mycoba...  1194    0.0   
gi|289442876|ref|ZP_06432620.1|  conserved membrane protein [Myco...  1192    0.0   
gi|15840888|ref|NP_335925.1|  hypothetical protein MT1475 [Mycoba...  1191    0.0   
gi|31792625|ref|NP_855118.1|  hypothetical protein Mb1466 [Mycoba...  1191    0.0   
gi|340626445|ref|YP_004744897.1|  hypothetical protein MCAN_14471...  1185    0.0   
gi|183982249|ref|YP_001850540.1|  hypothetical protein MMAR_2236 ...  1006    0.0   
gi|240171802|ref|ZP_04750461.1|  hypothetical protein MkanA1_2098...   967    0.0   
gi|289447028|ref|ZP_06436772.1|  conserved hypothetical protein [...   963    0.0   
gi|254818397|ref|ZP_05223398.1|  hypothetical protein MintA_00642...   961    0.0   
gi|296170702|ref|ZP_06852277.1|  conserved hypothetical protein [...   960    0.0   
gi|41407260|ref|NP_960096.1|  hypothetical protein MAP1162 [Mycob...   852    0.0   
gi|342858726|ref|ZP_08715381.1|  hypothetical protein MCOL_07611 ...   850    0.0   
gi|118464229|ref|YP_882525.1|  hypothetical protein MAV_3343 [Myc...   849    0.0   
gi|254775788|ref|ZP_05217304.1|  hypothetical protein MaviaA2_141...   847    0.0   
gi|333990917|ref|YP_004523531.1|  hypothetical protein JDM601_227...   828    0.0   
gi|311744358|ref|ZP_07718160.1|  conserved hypothetical protein [...   693    0.0   
gi|29827886|ref|NP_822520.1|  hypothetical protein SAV_1345 [Stre...   592    6e-167
gi|183984300|ref|YP_001852591.1|  hypothetical protein MMAR_4329 ...   526    6e-147
gi|118616036|ref|YP_904368.1|  hypothetical protein MUL_0139 [Myc...   526    6e-147
gi|240170232|ref|ZP_04748891.1|  hypothetical protein MkanA1_1302...   521    1e-145
gi|145222701|ref|YP_001133379.1|  hypothetical protein Mflv_2113 ...   516    4e-144
gi|120405543|ref|YP_955372.1|  hypothetical protein Mvan_4591 [My...   511    1e-142
gi|315443165|ref|YP_004076044.1|  hypothetical protein Mspyr1_153...   509    7e-142
gi|343926347|ref|ZP_08765852.1|  hypothetical protein GOALK_060_0...   503    5e-140
gi|108801046|ref|YP_641243.1|  hypothetical protein Mmcs_4082 [My...   503    5e-140
gi|340626144|ref|YP_004744596.1|  hypothetical protein MCAN_11411...   502    7e-140
gi|15608272|ref|NP_215648.1|  hypothetical protein Rv1132 [Mycoba...   502    8e-140
gi|289446722|ref|ZP_06436466.1|  conserved membrane protein [Myco...   502    8e-140
gi|31792326|ref|NP_854819.1|  hypothetical protein Mb1163 [Mycoba...   502    9e-140
gi|15840570|ref|NP_335607.1|  hypothetical protein MT1164 [Mycoba...   502    9e-140
gi|289442562|ref|ZP_06432306.1|  conserved membrane protein [Myco...   502    9e-140
gi|126436883|ref|YP_001072574.1|  hypothetical protein Mjls_4312 ...   501    1e-139
gi|306781798|ref|ZP_07420135.1|  conserved membrane protein [Myco...   500    2e-139
gi|296170006|ref|ZP_06851611.1|  conserved hypothetical protein [...   496    6e-138
gi|254823169|ref|ZP_05228170.1|  hypothetical protein MintA_24789...   494    2e-137
gi|254550130|ref|ZP_05140577.1|  hypothetical protein Mtube_06679...   494    2e-137
gi|254774483|ref|ZP_05215999.1|  hypothetical protein MaviaA2_074...   494    2e-137
gi|169631626|ref|YP_001705275.1|  hypothetical protein MAB_4552 [...   493    3e-137
gi|336461001|gb|EGO39881.1|  Transmembrane protein of unknown fun...   493    5e-137
gi|41408425|ref|NP_961261.1|  hypothetical protein MAP2327 [Mycob...   493    5e-137
gi|342861729|ref|ZP_08718375.1|  hypothetical protein MCOL_22686 ...   491    1e-136
gi|118462498|ref|YP_880889.1|  hypothetical protein MAV_1654 [Myc...   489    4e-136
gi|296170413|ref|ZP_06852001.1|  conserved hypothetical protein [...   489    4e-136
gi|118472311|ref|YP_889448.1|  hypothetical protein MSMEG_5202 [M...   481    2e-133
gi|254823134|ref|ZP_05228135.1|  hypothetical protein MintA_24610...   481    2e-133
gi|333989724|ref|YP_004522338.1|  hypothetical protein JDM601_108...   478    1e-132
gi|183983926|ref|YP_001852217.1|  hypothetical protein MMAR_3954 ...   473    3e-131
gi|336458750|gb|EGO37710.1|  Transmembrane protein of unknown fun...   472    7e-131
gi|41408760|ref|NP_961596.1|  hypothetical protein MAP2662c [Myco...   472    1e-130
gi|118464709|ref|YP_880506.1|  hypothetical protein MAV_1261 [Myc...   471    1e-130


>gi|15608569|ref|NP_215947.1| hypothetical protein Rv1431 [Mycobacterium tuberculosis H37Rv]
 gi|148661222|ref|YP_001282745.1| hypothetical protein MRA_1440 [Mycobacterium tuberculosis H37Ra]
 gi|148822651|ref|YP_001287405.1| hypothetical protein TBFG_11460 [Mycobacterium tuberculosis F11]
 39 more sequence titles
 
gi|253799519|ref|YP_003032520.1| hypothetical protein TBMG_02549 [Mycobacterium tuberculosis KZN 
1435]
 gi|254231670|ref|ZP_04924997.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|254364311|ref|ZP_04980357.1| conserved membrane protein [Mycobacterium tuberculosis str. Haarlem]
 gi|254550445|ref|ZP_05140892.1| hypothetical protein Mtube_08282 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289554779|ref|ZP_06443989.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289761590|ref|ZP_06520968.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503]
 gi|297633987|ref|ZP_06951767.1| hypothetical protein MtubK4_07687 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297730976|ref|ZP_06960094.1| hypothetical protein MtubKR_07787 [Mycobacterium tuberculosis 
KZN R506]
 gi|306780762|ref|ZP_07419099.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|306784161|ref|ZP_07422483.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|306788531|ref|ZP_07426853.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306792854|ref|ZP_07431156.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306797251|ref|ZP_07435553.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|306807331|ref|ZP_07443999.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|306967529|ref|ZP_07480190.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|306971722|ref|ZP_07484383.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|307079432|ref|ZP_07488602.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|307084000|ref|ZP_07493113.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|313658309|ref|ZP_07815189.1| hypothetical protein MtubKV_07807 [Mycobacterium tuberculosis 
KZN V2475]
 gi|2131065|emb|CAB09253.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|124600729|gb|EAY59739.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|134149825|gb|EBA41870.1| conserved membrane protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148505374|gb|ABQ73183.1| hypothetical protein MRA_1440 [Mycobacterium tuberculosis H37Ra]
 gi|148721178|gb|ABR05803.1| conserved membrane protein [Mycobacterium tuberculosis F11]
 gi|253321022|gb|ACT25625.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439411|gb|EFD21904.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289709096|gb|EFD73112.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503]
 gi|308326421|gb|EFP15272.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308331107|gb|EFP19958.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308334918|gb|EFP23769.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308338727|gb|EFP27578.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308342412|gb|EFP31263.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308346254|gb|EFP35105.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308354847|gb|EFP43698.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308358796|gb|EFP47647.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308362733|gb|EFP51584.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308366365|gb|EFP55216.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|328459267|gb|AEB04690.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
 gi|344219261|gb|AEM99891.1| hypothetical protein MTCTRI2_1468 [Mycobacterium tuberculosis 
CTRI-2]
Length=589

 Score = 1194 bits (3090),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 589/589 (100%), Positives = 589/589 (100%), Gaps = 0/589 (0%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA
Sbjct  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW
Sbjct  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD
Sbjct  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL
Sbjct  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG
Sbjct  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF
Sbjct  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD
Sbjct  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480
            AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE
Sbjct  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480

Query  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540
            AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ
Sbjct  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540

Query  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP
Sbjct  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589


>gi|289442876|ref|ZP_06432620.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289569451|ref|ZP_06449678.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289574100|ref|ZP_06454327.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 19 more sequence titles
 
gi|289745182|ref|ZP_06504560.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749989|ref|ZP_06509367.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289753513|ref|ZP_06512891.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757539|ref|ZP_06516917.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294994992|ref|ZP_06800683.1| hypothetical protein Mtub2_10895 [Mycobacterium tuberculosis 
210]
 gi|298524937|ref|ZP_07012346.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|339631498|ref|YP_004723140.1| hypothetical protein MAF_14530 [Mycobacterium africanum GM041182]
 gi|289415795|gb|EFD13035.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289538531|gb|EFD43109.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289543205|gb|EFD46853.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289685710|gb|EFD53198.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690576|gb|EFD58005.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289694100|gb|EFD61529.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289713103|gb|EFD77115.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494731|gb|EFI30025.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326903052|gb|EGE49985.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|339294409|gb|AEJ46520.1| hypothetical protein CCDC5079_1330 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298046|gb|AEJ50156.1| hypothetical protein CCDC5180_1319 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339330854|emb|CCC26525.1| conserved membrane protein [Mycobacterium africanum GM041182]
Length=589

 Score = 1192 bits (3084),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 588/589 (99%), Positives = 588/589 (99%), Gaps = 0/589 (0%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA
Sbjct  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            IISL PGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW
Sbjct  61   IISLTPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD
Sbjct  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL
Sbjct  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG
Sbjct  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF
Sbjct  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD
Sbjct  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480
            AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE
Sbjct  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480

Query  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540
            AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ
Sbjct  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540

Query  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP
Sbjct  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589


>gi|15840888|ref|NP_335925.1| hypothetical protein MT1475 [Mycobacterium tuberculosis CDC1551]
 gi|13881090|gb|AAK45739.1| hypothetical protein MT1475 [Mycobacterium tuberculosis CDC1551]
 gi|323720095|gb|EGB29201.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=589

 Score = 1191 bits (3081),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 588/589 (99%), Positives = 588/589 (99%), Gaps = 0/589 (0%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGT YAVYLLYLTKIAVYVAAGAA
Sbjct  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTLYAVYLLYLTKIAVYVAAGAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW
Sbjct  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD
Sbjct  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL
Sbjct  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG
Sbjct  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF
Sbjct  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD
Sbjct  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480
            AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE
Sbjct  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480

Query  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540
            AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ
Sbjct  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540

Query  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP
Sbjct  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589


>gi|31792625|ref|NP_855118.1| hypothetical protein Mb1466 [Mycobacterium bovis AF2122/97]
 gi|121637361|ref|YP_977584.1| hypothetical protein BCG_1492 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989836|ref|YP_002644523.1| hypothetical protein JTY_1467 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31618214|emb|CAD94327.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493008|emb|CAL71479.1| Conserved membrane protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224772949|dbj|BAH25755.1| hypothetical protein JTY_1467 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341601380|emb|CCC64053.1| conserved membrane protein [Mycobacterium bovis BCG str. Moreau 
RDJ]
Length=589

 Score = 1191 bits (3080),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 587/589 (99%), Positives = 588/589 (99%), Gaps = 0/589 (0%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA
Sbjct  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            IISL PGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW
Sbjct  61   IISLTPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD
Sbjct  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL
Sbjct  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG
Sbjct  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF
Sbjct  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD
Sbjct  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480
            AEATMETSVVKSSALVVNQLAKLYDGATAEIMTD+VAAFRAMHTHGRALNGLLPRALDDE
Sbjct  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDQVAAFRAMHTHGRALNGLLPRALDDE  480

Query  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540
            AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ
Sbjct  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540

Query  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP
Sbjct  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589


>gi|340626445|ref|YP_004744897.1| hypothetical protein MCAN_14471 [Mycobacterium canettii CIPT 
140010059]
 gi|340004635|emb|CCC43779.1| conserved membrane protein [Mycobacterium canettii CIPT 140010059]
Length=589

 Score = 1185 bits (3066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 586/589 (99%), Positives = 586/589 (99%), Gaps = 0/589 (0%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKPDLPDVDHDTWLTQPRRTRLQVVTR WVEHGFGTPYAVYLLYLTKIAVYVAAGAA
Sbjct  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRHWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            IISL PGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW
Sbjct  61   IISLTPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD
Sbjct  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLINPVLVVPTIVALGVLGLRDKTIFLAARGE YWLKLFVFFFPFTDQIAAFKIIMLCL
Sbjct  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEPYWLKLFVFFFPFTDQIAAFKIIMLCL  240

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG
Sbjct  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF
Sbjct  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD
Sbjct  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480
            AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE
Sbjct  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480

Query  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540
            AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ
Sbjct  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540

Query  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP
Sbjct  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589


>gi|183982249|ref|YP_001850540.1| hypothetical protein MMAR_2236 [Mycobacterium marinum M]
 gi|183175575|gb|ACC40685.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=582

 Score = 1006 bits (2602),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 501/585 (86%), Positives = 527/585 (91%), Gaps = 4/585 (0%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+ PDLPDVDH+TW T PR TRLQVVTR W EHGFGTPYAVYLLYL KI +YVAA AA
Sbjct  1    MGFMSPDLPDVDHETWHTLPRATRLQVVTRHWAEHGFGTPYAVYLLYLLKIGIYVAAPAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            IISL PGLGGL  I DWWTQPIVYQKVI+FTLLFEVLGFGCGSGPLTGRF PP+GGFLYW
Sbjct  61   IISLTPGLGGLGHIADWWTQPIVYQKVIIFTLLFEVLGFGCGSGPLTGRFMPPVGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WP KVPFT GDTRTVVDV LYAIVLI G WAL SPG  GP    VTA+GD
Sbjct  121  LRPKTIRLPPWPAKVPFTDGDTRTVVDVTLYAIVLISGGWALFSPGHAGP----VTASGD  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLI+P+LVVPTI+AL +LGLRDKT+FLAARGEHYWLKL VFFFPFTDQIAAFKIIMLCL
Sbjct  177  VGLIDPILVVPTIIALALLGLRDKTVFLAARGEHYWLKLLVFFFPFTDQIAAFKIIMLCL  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVMTSNNALLR R+FNPIKHLLYRDH NDLRPSWLPK+MAH G
Sbjct  237  WWGAATSKLNHHFPYVVAVMTSNNALLRGRLFNPIKHLLYRDHVNDLRPSWLPKIMAHVG  296

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVP +LVLVA   PWRWFLIGFMV+FHLNILSNLPMGVPLEWNVFFIFSL YLF
Sbjct  297  GTTAEFLVPAVLVLVAGDQPWRWFLIGFMVIFHLNILSNLPMGVPLEWNVFFIFSLFYLF  356

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            GHYG+I A DLRSPLLLAIV+A VAVV+ GNL PEKISFLPAMRYYAGNWATS+WCFR  
Sbjct  357  GHYGSIRAIDLRSPLLLAIVLAAVAVVVAGNLFPEKISFLPAMRYYAGNWATSVWCFRAG  416

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480
            AE  +E SVVKSSALVVNQLAKLYD  TAEIM DK AAFRAMHTHGRALNGLLPRA+ +E
Sbjct  417  AEEKIEASVVKSSALVVNQLAKLYDANTAEIMADKTAAFRAMHTHGRALNGLLPRAIGNE  476

Query  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540
            A Y++REGEIVAGPLVGWNFGEGHLHNEQLV AVQRRCNFADGDLRVIILEGQPIH+QKQ
Sbjct  477  AEYKVREGEIVAGPLVGWNFGEGHLHNEQLVQAVQRRCNFADGDLRVIILEGQPIHIQKQ  536

Query  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGT  585
            WYRIVDAKTGL EAGYVTVEDML+RQPWPEPGDEFPVHVTTQR  
Sbjct  537  WYRIVDAKTGLIEAGYVTVEDMLARQPWPEPGDEFPVHVTTQRAA  581


>gi|240171802|ref|ZP_04750461.1| hypothetical protein MkanA1_20980 [Mycobacterium kansasii ATCC 
12478]
Length=588

 Score =  967 bits (2499),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 482/592 (82%), Positives = 521/592 (89%), Gaps = 7/592 (1%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+ P+LPD D  TW T PR TRLQ+VTR WVEHGFGTPYA YLLYL KI VY+AA AA
Sbjct  1    MGFMSPELPDADPATWQTLPRATRLQIVTRHWVEHGFGTPYAAYLLYLFKIGVYIAAPAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            IISL PGLGGL  I DWWTQPIVYQKVI+FTLLFEV+GFGCGSGPLTGRF PP+GGFLYW
Sbjct  61   IISLTPGLGGLGHIADWWTQPIVYQKVIIFTLLFEVMGFGCGSGPLTGRFLPPVGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLPAWPDKVPFT+GD+RT+VDV LYA+VL GGVWAL+SPG     G PVT AGD
Sbjct  121  LRPKTIRLPAWPDKVPFTRGDSRTLVDVILYAVVLAGGVWALVSPGH----GGPVTGAGD  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLI+PVLV+PTIVAL +LGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFK+IML L
Sbjct  177  VGLIDPVLVIPTIVALALLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKLIMLAL  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVV+VMTSNNALLRSR+FN +KHLLY D  NDLRPSWLPKLMAH G
Sbjct  237  WWGAATSKLNHHFPYVVSVMTSNNALLRSRLFNWLKHLLYLDPVNDLRPSWLPKLMAHVG  296

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVPG+LV VADGHPWRWFLIGFMV+FHLNILSNLPMGVPLEWNVFFIFSL YLF
Sbjct  297  GTTAEFLVPGVLVFVADGHPWRWFLIGFMVIFHLNILSNLPMGVPLEWNVFFIFSLFYLF  356

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            GHYGAI AT L+SPLLLAIV+A VAV + GNL PEKISFLPAMRYYAGNWATS+WCFR  
Sbjct  357  GHYGAIQATGLQSPLLLAIVLAAVAVAVAGNLFPEKISFLPAMRYYAGNWATSVWCFRPG  416

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALD--  478
            AE  +E +VVKSSALVVNQL +LY   +AEIM DK AAFRAMHTHGRALNGL+ RA+   
Sbjct  417  AEEKLEANVVKSSALVVNQLTRLYGADSAEIMMDKTAAFRAMHTHGRALNGLVSRAVGGD  476

Query  479  -DEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHV  537
             DE  YR+REGE++AGPLVGWNFGEGHLHNEQL+AAVQRRCNF  GD+RV+ILEGQPIHV
Sbjct  477  VDETDYRVREGELIAGPLVGWNFGEGHLHNEQLLAAVQRRCNFEAGDIRVVILEGQPIHV  536

Query  538  QKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            QKQWYRIVDAK G+ E GYV V+DMLSRQPWPE GDEFPVHVTTQR  P  P
Sbjct  537  QKQWYRIVDAKAGVLETGYVEVKDMLSRQPWPEAGDEFPVHVTTQRAVPGTP  588


>gi|289447028|ref|ZP_06436772.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419986|gb|EFD17187.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=620

 Score =  963 bits (2490),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/474 (100%), Positives = 474/474 (100%), Gaps = 0/474 (0%)

Query  116  GFLYWLRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPV  175
            GFLYWLRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPV
Sbjct  147  GFLYWLRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPV  206

Query  176  TAAGDVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKI  235
            TAAGDVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKI
Sbjct  207  TAAGDVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKI  266

Query  236  IMLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKL  295
            IMLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKL
Sbjct  267  IMLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKL  326

Query  296  MAHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFS  355
            MAHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFS
Sbjct  327  MAHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFS  386

Query  356  LCYLFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIW  415
            LCYLFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIW
Sbjct  387  LCYLFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIW  446

Query  416  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
            CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR
Sbjct  447  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  506

Query  476  ALDDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
            ALDDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI
Sbjct  507  ALDDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  566

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP
Sbjct  567  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  620


>gi|254818397|ref|ZP_05223398.1| hypothetical protein MintA_00642 [Mycobacterium intracellulare 
ATCC 13950]
Length=581

 Score =  961 bits (2485),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/579 (83%), Positives = 514/579 (89%), Gaps = 4/579 (0%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+ P+LPDVD   W T PR TRLQVVTR W EHGFGTPYAVYLLYL KIA+YVAA AA
Sbjct  1    MGFMSPELPDVDRSAWPTLPRATRLQVVTRHWAEHGFGTPYAVYLLYLLKIALYVAAPAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            II+L PGLGGL RIGDWWTQPIVYQKV++FTLLFEV G GCGSGPLTGRF PPIGG LYW
Sbjct  61   IIALTPGLGGLGRIGDWWTQPIVYQKVVIFTLLFEVTGLGCGSGPLTGRFMPPIGGILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLPAWP KVPFT+GDTRT  DVALYAIVLIGGVWALLSPG     G PVT AGD
Sbjct  121  LRPNTIRLPAWPGKVPFTRGDTRTAFDVALYAIVLIGGVWALLSPGH----GGPVTTAGD  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLI+PV V+PTIVAL +LGLRDKT+FLAARGEHYWLKLFVFFFPFTDQ+AA K+IMLCL
Sbjct  177  VGLIDPVRVIPTIVALALLGLRDKTVFLAARGEHYWLKLFVFFFPFTDQVAACKLIMLCL  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAA SKLNHHFPYVVAVMTSNNALLRSRVF P+KHLLY DH NDLRPS LPKLMAH G
Sbjct  237  WWGAAVSKLNHHFPYVVAVMTSNNALLRSRVFTPLKHLLYLDHVNDLRPSLLPKLMAHVG  296

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEF+VP ILV  A  HPWRWFLIGFMVLFHLNI+SNLPMGVPLEWNVFFIFSL YLF
Sbjct  297  GTTAEFVVPTILVFFAADHPWRWFLIGFMVLFHLNIISNLPMGVPLEWNVFFIFSLFYLF  356

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            GHYGA+ ATDLRSP+LLA+VI  V VVI+GN+ PEKISFLPAMRYYAGNWATS+WCFR  
Sbjct  357  GHYGAVRATDLRSPVLLALVILAVVVVIVGNMFPEKISFLPAMRYYAGNWATSVWCFRAG  416

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480
            AE  ++  +VKSSALVVNQLA+LYD  TAEI+ DK+AAFRAMH HGRALNGLLPRA+DDE
Sbjct  417  AEEKIDADIVKSSALVVNQLARLYDPETAEILADKIAAFRAMHVHGRALNGLLPRAIDDE  476

Query  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540
            A Y+IREGEIVAGPLVGWNFGEGHLHNEQLV AVQRRC F DGDLRVI+LEGQPIHVQ+Q
Sbjct  477  ADYKIREGEIVAGPLVGWNFGEGHLHNEQLVEAVQRRCRFEDGDLRVIVLEGQPIHVQRQ  536

Query  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
             YRI+DAKTGL EAGYV V+DML+RQPWPEPGD+ PVHV
Sbjct  537  SYRILDAKTGLIEAGYVDVKDMLTRQPWPEPGDDCPVHV  575


>gi|296170702|ref|ZP_06852277.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295894691|gb|EFG74425.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=593

 Score =  960 bits (2481),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 470/589 (80%), Positives = 514/589 (88%), Gaps = 4/589 (0%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+ PDLPDVD +TW T PR TRLQ+VTR W EHGFGTP AVYLLYLTKIA+Y+A  AA
Sbjct  1    MGFMTPDLPDVDRETWPTLPRATRLQIVTRHWAEHGFGTPSAVYLLYLTKIALYIAVPAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            IISL PGLGGL RI DWWTQPIVYQKVIVFTLLFEV G GCGSGPLTGRF PPIGG LYW
Sbjct  61   IISLTPGLGGLGRIADWWTQPIVYQKVIVFTLLFEVTGLGCGSGPLTGRFMPPIGGILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLPAWP KVPFT GD RT+VDVALYAIVL GG+WALLSPG     G P TAAGD
Sbjct  121  LRPNTIRLPAWPGKVPFTAGDNRTIVDVALYAIVLAGGLWALLSPGH----GGPATAAGD  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLI+PV V+PTIVAL VLGLRDKTIFLAARGEHYWLKL VFFFPFTDQIAA+K+IML L
Sbjct  177  VGLIDPVRVIPTIVALAVLGLRDKTIFLAARGEHYWLKLLVFFFPFTDQIAAYKLIMLLL  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVV+VMTSNNALLR ++FNPIKH+LYRDH NDLRP+WLPK MAH G
Sbjct  237  WWGAATSKLNHHFPYVVSVMTSNNALLRPKLFNPIKHMLYRDHINDLRPTWLPKAMAHVG  296

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEF+VP +LV  A  HPWRWFLIGFMV+FHLNI+SNLPMGVPLEWNVFFIFSL YLF
Sbjct  297  GTTAEFVVPTVLVFFAGDHPWRWFLIGFMVIFHLNIISNLPMGVPLEWNVFFIFSLFYLF  356

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            GHY ++ ATDLRSPLL A+V+A +AVVI GN+ P+KISFLPAMRYYAGNWA+S+WCFR  
Sbjct  357  GHYASVQATDLRSPLLWALVVAALAVVIAGNMFPKKISFLPAMRYYAGNWASSVWCFRAG  416

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480
            AE  ++  VVKSSALV+NQLA+LYD  TAEIM DK AAFRAMH HGRALN L+PRA+DDE
Sbjct  417  AEEKVDAEVVKSSALVINQLARLYDPETAEIMADKTAAFRAMHVHGRALNALVPRAIDDE  476

Query  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540
            A+Y+IREGEIVAGPLVGWNFGEGHLHNEQL+ AVQRRC+F DGD+RVI+LEGQPIH+QKQ
Sbjct  477  ANYKIREGEIVAGPLVGWNFGEGHLHNEQLLEAVQRRCHFEDGDVRVIVLEGQPIHIQKQ  536

Query  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            WYRI DAK GL E GYV V DML+RQPWPEPGDE PVHV    G P+ P
Sbjct  537  WYRIFDAKAGLIEEGYVNVADMLARQPWPEPGDELPVHVIDGGGRPASP  585


>gi|41407260|ref|NP_960096.1| hypothetical protein MAP1162 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395612|gb|AAS03479.1| hypothetical protein MAP_1162 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336457989|gb|EGO36976.1| Transmembrane protein of unknown function (DUF3556) [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=581

 Score =  852 bits (2200),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/583 (75%), Positives = 486/583 (84%), Gaps = 8/583 (1%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+ P+ PDVD  TW   PR TR Q++TR WVEHGFG+PYAVYL Y+ KIA Y+A  AA
Sbjct  1    MGFMTPEFPDVDPQTWTGLPRSTRRQIMTRHWVEHGFGSPYAVYLFYVFKIAGYIAGAAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            +ISL PGLGGL RI DWWTQPIVYQK++VFTLLFE+LG GCGSGPLT RFWPP GGFLYW
Sbjct  61   VISLTPGLGGLGRIADWWTQPIVYQKLVVFTLLFEILGLGCGSGPLTARFWPPFGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLP WPDKVPFT GD+RTVVDVALY +VL  GV ALLSPG     G PVTAAGD
Sbjct  121  LRPNTIRLPPWPDKVPFTAGDSRTVVDVALYLVVLGSGVAALLSPGR----GGPVTAAGD  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLI+PVLVVP IVAL +LGLRDKTIFLAARGEHY L L VFFF FTDQIAAFKIIML L
Sbjct  177  VGLIDPVLVVPAIVALALLGLRDKTIFLAARGEHYGLTLLVFFFGFTDQIAAFKIIMLAL  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVM SN+ LLR+R FN  K  LY D  +DLRPSW+PK+MAH G
Sbjct  237  WWGAATSKLNHHFPYVVAVMMSNSPLLRARAFNWFKRRLYLDPVDDLRPSWIPKVMAHVG  296

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVP +LV VADGH W WFLI FMVLFHLNI S +PMGVPLEWNVFFIFSL YLF
Sbjct  297  GTTAEFLVPLVLVFVADGHRWAWFLIAFMVLFHLNIASTIPMGVPLEWNVFFIFSLFYLF  356

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVV-IMGNLLPEKISFLPAMRYYAGNWATSIWCFRG  419
            GHY  +TAT L SPLLL I+IA +AVV I+GNL P++ISFLPAMRYYAGNWATS WCFR 
Sbjct  357  GHYAGVTATGLSSPLLLGILIAALAVVPILGNLFPQQISFLPAMRYYAGNWATSTWCFRR  416

Query  420  DAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRAL--  477
             AE  +E ++ K+SALV NQLA+LYD  +AE+M DK+  +R+MHTHGRAL GL+PRAL  
Sbjct  417  GAEDKIEANITKASALVPNQLARLYDPQSAELMIDKLMGWRSMHTHGRALGGLVPRALPG  476

Query  478  -DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIH  536
              DEA Y +R+GEIVAGPL+GWNFGEGHLHNEQL+AAVQRRCNF +G++RVIILE QPI 
Sbjct  477  GADEADYLLRDGEIVAGPLIGWNFGEGHLHNEQLLAAVQRRCNFDEGEVRVIILEAQPIQ  536

Query  537  VQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
             Q Q YRIVDA+TGL EAG+V V  MLSRQPWPEPGDE+PVHV
Sbjct  537  RQTQAYRIVDARTGLIEAGHVDVASMLSRQPWPEPGDEYPVHV  579


>gi|342858726|ref|ZP_08715381.1| hypothetical protein MCOL_07611 [Mycobacterium colombiense CECT 
3035]
 gi|342134430|gb|EGT87610.1| hypothetical protein MCOL_07611 [Mycobacterium colombiense CECT 
3035]
Length=586

 Score =  850 bits (2197),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 432/589 (74%), Positives = 482/589 (82%), Gaps = 8/589 (1%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+ P+ PDVD  TWL+ PR TR Q++TR WVEHGFG+PYAVYL Y+ KIA Y    AA
Sbjct  1    MGFMAPEFPDVDPQTWLSLPRSTRRQIMTRHWVEHGFGSPYAVYLFYVFKIAGYAVGAAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            +ISL PGLGGL  + DWWTQPIVYQK++VFTLLFE+LG GCGSGPLT RFWPP GGFLYW
Sbjct  61   VISLTPGLGGLGHLADWWTQPIVYQKLVVFTLLFEILGLGCGSGPLTARFWPPFGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLPAWPDKVPFT+GD RTVVDV LY +VL  GVWALLSPG     G PVT A D
Sbjct  121  LRPNTIRLPAWPDKVPFTRGDRRTVVDVGLYLVVLASGVWALLSPGR----GGPVTGACD  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLI+P+LVVP IVAL +LGLRDKT+FLAARGEHY L L VFFF FTDQIAAFKIIML L
Sbjct  177  VGLIDPMLVVPAIVALALLGLRDKTVFLAARGEHYGLTLLVFFFGFTDQIAAFKIIMLAL  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVM SN+ LLR R FN  K  LY D  +DLRPSW+PK+MAH G
Sbjct  237  WWGAATSKLNHHFPYVVAVMMSNSPLLRGRAFNWFKRRLYLDPIDDLRPSWIPKVMAHVG  296

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVP +LV VADGH W WFLI FMVLFHLNI S +PMGVPLEWNVFFIFSL YLF
Sbjct  297  GTTAEFLVPLVLVFVADGHRWAWFLIAFMVLFHLNITSTIPMGVPLEWNVFFIFSLFYLF  356

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVV-IMGNLLPEKISFLPAMRYYAGNWATSIWCFRG  419
            GHY  +TA  L SPLLL I+I  +AVV IMGNL P++ISFLPAMRYYAGNWATS WC R 
Sbjct  357  GHYAGVTAAGLSSPLLLVILIVALAVVPIMGNLFPQQISFLPAMRYYAGNWATSTWCLRR  416

Query  420  DAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRAL--  477
              E  +E ++ K+SAL  NQLA+LYD  TAE+M DK+ A+R+MHTHGRAL GL+PRAL  
Sbjct  417  GTEDKIEANITKASALAPNQLARLYDPQTAELMIDKLMAWRSMHTHGRALGGLVPRALPA  476

Query  478  -DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIH  536
              DEA YR+R+GEI+AGPL+GWNFGEGHLHNEQL+AAVQRRC+F DGD+RVIILE QPIH
Sbjct  477  GADEADYRLRDGEIIAGPLIGWNFGEGHLHNEQLLAAVQRRCDFGDGDVRVIILEAQPIH  536

Query  537  VQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGT  585
             Q Q YRIVDAK+GL E GYV V  MLSRQPWPEPGD++PVHV +  G 
Sbjct  537  RQTQAYRIVDAKSGLIEEGYVDVAAMLSRQPWPEPGDDYPVHVISGGGA  585


>gi|118464229|ref|YP_882525.1| hypothetical protein MAV_3343 [Mycobacterium avium 104]
 gi|118165516|gb|ABK66413.1| conserved membrane protein [Mycobacterium avium 104]
Length=581

 Score =  849 bits (2194),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 439/583 (76%), Positives = 486/583 (84%), Gaps = 8/583 (1%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+ P+ PDVD  TW   PR TR Q++TR WVEHGFG+PYAVYL Y+ KIA YVA  AA
Sbjct  1    MGFMTPEFPDVDPQTWTGLPRSTRRQIMTRHWVEHGFGSPYAVYLFYVFKIAGYVAGAAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            +ISL PGLGGL RI DWWTQPIVYQK++VFTLLFE+LG GCGSGPLT RFWPP GGFLYW
Sbjct  61   VISLTPGLGGLGRIADWWTQPIVYQKLVVFTLLFEILGLGCGSGPLTARFWPPFGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLP WPDKVPFT GD+RTVVDVALY +VL  GV ALLSPG     G PVTAAGD
Sbjct  121  LRPNTIRLPPWPDKVPFTAGDSRTVVDVALYLVVLGSGVAALLSPGR----GGPVTAAGD  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLI+PVLVVP IVAL +LGLRDKTIFLAARGEHY L L VFFF FTDQIAAFKIIML L
Sbjct  177  VGLIDPVLVVPAIVALALLGLRDKTIFLAARGEHYGLTLLVFFFGFTDQIAAFKIIMLAL  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVM SN+ LLR+R FN  K  LY D  +DLRPSW+PK+MAH G
Sbjct  237  WWGAATSKLNHHFPYVVAVMMSNSPLLRARAFNWFKRRLYLDPVDDLRPSWIPKVMAHVG  296

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVP +LV VADGH W WFLI FMVLFHLNI S +PMGVPLEWNVFFIFSL YLF
Sbjct  297  GTTAEFLVPLVLVFVADGHRWAWFLIAFMVLFHLNIASTIPMGVPLEWNVFFIFSLFYLF  356

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVV-IMGNLLPEKISFLPAMRYYAGNWATSIWCFRG  419
            GHY  +TAT L SPLLL I+IA +AVV I+GNL P++ISFLPAMRYYAGNWATS WCFR 
Sbjct  357  GHYAGVTATGLSSPLLLVILIAALAVVPILGNLFPQQISFLPAMRYYAGNWATSTWCFRR  416

Query  420  DAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRAL--  477
             AE  +E ++ K+SALV NQLA+LYD  +AE+M DK+  +R+MHTHGRAL GL+PRAL  
Sbjct  417  GAEDKIEANITKASALVPNQLARLYDPQSAELMIDKLMGWRSMHTHGRALGGLVPRALPG  476

Query  478  -DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIH  536
              DEA Y +R+GEIVAGPL+GWNFGEGHLHNEQL+AAVQRRCNF +G++RVIILE QPI 
Sbjct  477  GADEADYLLRDGEIVAGPLIGWNFGEGHLHNEQLLAAVQRRCNFDEGEVRVIILEAQPIQ  536

Query  537  VQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
             Q Q YRIVDAKTGL EAG+V V  MLSRQPWPEPGDE+PVHV
Sbjct  537  RQTQAYRIVDAKTGLIEAGHVDVASMLSRQPWPEPGDEYPVHV  579


>gi|254775788|ref|ZP_05217304.1| hypothetical protein MaviaA2_14120 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=581

 Score =  847 bits (2188),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/583 (75%), Positives = 484/583 (84%), Gaps = 8/583 (1%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+ P+ PDVD  TW   PR TR Q++TR WVEHGFG+PYAVYL Y+ KIA YVA  AA
Sbjct  1    MGFMTPEFPDVDPQTWTGLPRSTRRQIMTRHWVEHGFGSPYAVYLFYVFKIAGYVAGAAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            +ISL PGLGGL RI DWWTQPIVYQK++VFTLLFE+LG GCGSGPLT RFWPP GGFLYW
Sbjct  61   VISLTPGLGGLGRIADWWTQPIVYQKLVVFTLLFEILGLGCGSGPLTARFWPPFGGFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLP WPDKVPFT GD+RTVVDVALY +VL  GV ALLSPG     G PVTAAGD
Sbjct  121  LRPNTIRLPPWPDKVPFTAGDSRTVVDVALYLVVLGSGVAALLSPGR----GGPVTAAGD  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGLI+P+LVVP IVAL +LGLRDK IFLAARGEHY L L VFFF FTDQIAAFKIIML L
Sbjct  177  VGLIDPILVVPAIVALALLGLRDKMIFLAARGEHYGLTLLVFFFGFTDQIAAFKIIMLAL  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVM SN+ LLR+R FN  K   Y D  +DLRPSW+PK+MAH G
Sbjct  237  WWGAATSKLNHHFPYVVAVMMSNSPLLRARAFNWFKRRFYLDPVDDLRPSWIPKVMAHVG  296

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEFLVP +LV VADGH W WFLI FMVLFHLNI S +PMGVPLEWNVFFIFSL YLF
Sbjct  297  GTTAEFLVPLVLVFVADGHRWAWFLIAFMVLFHLNIASTIPMGVPLEWNVFFIFSLFYLF  356

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVV-IMGNLLPEKISFLPAMRYYAGNWATSIWCFRG  419
            GHY  +TAT L SPLLL I+IA +AVV I+GNL P++ISFLPAMRYYAGNWATS WCFR 
Sbjct  357  GHYAGVTATGLSSPLLLVILIAALAVVPILGNLFPQQISFLPAMRYYAGNWATSTWCFRT  416

Query  420  DAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRAL--  477
             AE  +E ++ K+SALV NQLA+LYD  +AE+M DK+  +R+MHTHGRAL GL+PRAL  
Sbjct  417  GAEDKIEANITKASALVPNQLARLYDPQSAELMIDKLMGWRSMHTHGRALGGLVPRALPG  476

Query  478  -DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIH  536
              DEA Y +R+GEIVAGPL+GWNFGEGHLHNEQL+AAVQRRCNF +G++RVIILE QPI 
Sbjct  477  GADEADYLLRDGEIVAGPLIGWNFGEGHLHNEQLLAAVQRRCNFDEGEVRVIILEAQPIQ  536

Query  537  VQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
             Q Q YRIVDAKTGL EAG+V V  MLSRQPWPEPGDE+PVHV
Sbjct  537  RQTQAYRIVDAKTGLIEAGHVDVASMLSRQPWPEPGDEYPVHV  579


>gi|333990917|ref|YP_004523531.1| hypothetical protein JDM601_2277 [Mycobacterium sp. JDM601]
 gi|333486885|gb|AEF36277.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=576

 Score =  828 bits (2140),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 414/584 (71%), Positives = 484/584 (83%), Gaps = 10/584 (1%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+KP +PDVD + W +     R+Q+ +R W EHGFGTP  VYL+YL K+  Y    AA
Sbjct  1    MGFIKPSVPDVDPEGWRSTGWAARIQICSRHWAEHGFGTPSGVYLIYLLKVVAYAVGAAA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            +I+L PGLGGLSRIGDWWTQPI YQK++VF+LLFE+LG GCGSGPLT RFWPPIGG LYW
Sbjct  61   VIALTPGLGGLSRIGDWWTQPIAYQKLVVFSLLFEILGLGCGSGPLTARFWPPIGGALYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRPNTIRLP WP KVPF+ GDTRTV+DVALYA VL  G+W LLSPG   PG         
Sbjct  121  LRPNTIRLPPWPGKVPFSSGDTRTVIDVALYAGVLASGIWVLLSPGRGEPG--------P  172

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGL++P+LVVP I AL +LGLRDKTIFLAAR EHY L L VFFFP+ DQ+AAFK+I+L L
Sbjct  173  VGLLDPMLVVPMIAALVLLGLRDKTIFLAARAEHYGLTLLVFFFPYVDQMAAFKLIILGL  232

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFPYVVAVMT+NNALLRS++F  +KHL+YRDH NDLRP+ +P+LMAH G
Sbjct  233  WWGAATSKLNHHFPYVVAVMTTNNALLRSKIFTGVKHLMYRDHVNDLRPTRIPQLMAHVG  292

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
            GTTAEF+VP +LVLVA  HPWRWFLI FMV+FHLNILSNLPMGVPLEWNVF +FSL +LF
Sbjct  293  GTTAEFVVPALLVLVAGDHPWRWFLIAFMVVFHLNILSNLPMGVPLEWNVFVLFSLFFLF  352

Query  361  GHYGAITATDLRSPLLLAI-VIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRG  419
            G +  I+  DLRSP LLAI ++ +V + + GN+ P++ISFLPAMRYYAGNWA S WCFR 
Sbjct  353  GQHPEISVYDLRSPWLLAILLVGLVVIPVAGNMFPQQISFLPAMRYYAGNWAASFWCFRA  412

Query  420  DAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKV-AAFRAMHTHGRALNGLLPRALD  478
              E T+ET++VKSSALV+NQLAK YD ATA+++ DKV  AFRAMH HGRALNGL+ RA++
Sbjct  413  GTEDTLETNIVKSSALVINQLAKFYDQATADLVADKVPGAFRAMHLHGRALNGLVYRAVE  472

Query  479  DEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQ  538
            + A Y IR+GEI+AGPL+GWNFGEGHLHNEQL+AAVQRRC+FA+GDLRVI+LEGQPIH Q
Sbjct  473  NLADYSIRDGEIIAGPLIGWNFGEGHLHNEQLLAAVQRRCHFAEGDLRVIVLEGQPIHRQ  532

Query  539  KQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQ  582
            +Q YRIVDAK+GL EAGYV V DMLSRQPWPEPGDEFPV +T Q
Sbjct  533  EQAYRIVDAKSGLIEAGYVAVADMLSRQPWPEPGDEFPVRITAQ  576


>gi|311744358|ref|ZP_07718160.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311312324|gb|EFQ82239.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
Length=584

 Score =  693 bits (1788),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 353/589 (60%), Positives = 424/589 (72%), Gaps = 9/589 (1%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF+ PDLPD+DHD W  +P   RL+ + + WVEHGFGTP A+YL+Y+ KI +YVA  A 
Sbjct  1    MGFVAPDLPDLDHDEWSRRPYSERLKPLAQHWVEHGFGTPSAIYLVYVLKIGLYVAGAAW  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
             IS+ PGLGGL  I  WW QPIVYQK++V+TLLFEV GFGCG GPLT RF PP+G FLYW
Sbjct  61   FISMTPGLGGLGDIDVWWDQPIVYQKLVVWTLLFEVAGFGCGWGPLTSRFVPPMGAFLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRL  WPDKVP T G TRT  DVALYA VL   VW L  PG     G  VTA   
Sbjct  121  LRPGTIRLAPWPDKVPGTGGTTRTWFDVALYAGVLGTAVWLLAQPGD----GVAVTAGDT  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGL++PV  +P I  LG+LGLRDKTIFLAARGE YW+ LFVFF PF D I AFK++ML L
Sbjct  177  VGLLDPVAALPLIATLGLLGLRDKTIFLAARGEQYWVTLFVFFLPFVDMIIAFKLVMLAL  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLNHHFP+VVAVM SN+ L+RSR    +K  +YR+  +DL+PS +P+ MAH G
Sbjct  237  WWGAATSKLNHHFPHVVAVMMSNSPLIRSRW---VKRKMYRNAPDDLQPSAIPRTMAHVG  293

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
             T  E+LVP  LV + DG    W  + FMV+FHL+ILS +PMGVPLEWNVFFIFSL YLF
Sbjct  294  -TAVEYLVPAYLVFLGDGGTLTWAALIFMVVFHLHILSTVPMGVPLEWNVFFIFSLFYLF  352

Query  361  GHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRGD  420
            G YG     D+ +P  L ++I +V + ++GN+ PEK+SFLPAMRYYAGNWATS W F+GD
Sbjct  353  GTYGETQIWDMTTPATLLVLIPLVGLPLLGNVRPEKVSFLPAMRYYAGNWATSAWYFKGD  412

Query  421  AEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDDE  480
            AE  M+ ++  +S L V+QL  LY   T ++   KV A+R++H+HGRA  GL  R + D 
Sbjct  413  AEQRMDAALTTTSPLPVDQLRMLYPDETVQLFLAKVMAWRSLHSHGRAHAGLTRRIIGDG  472

Query  481  AHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQKQ  540
              + +R+GEIVAG  +GWNFGEGHLHN QL+AAVQ RC+F  G+L V++LE QPI  Q Q
Sbjct  473  DGWTVRDGEIVAGYALGWNFGEGHLHNGQLLAAVQERCDFEPGELVVMVLESQPIQTQTQ  532

Query  541  WYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
             YR+ DA  GL E GYV V DMLSRQPWPE GD FPVH     G PS P
Sbjct  533  QYRVYDANLGLLEEGYVRVSDMLSRQPWPEAGDVFPVHDVRTFG-PSVP  580


>gi|29827886|ref|NP_822520.1| hypothetical protein SAV_1345 [Streptomyces avermitilis MA-4680]
 gi|29604987|dbj|BAC69055.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length=580

 Score =  592 bits (1526),  Expect = 6e-167, Method: Compositional matrix adjust.
 Identities = 313/569 (56%), Positives = 394/569 (70%), Gaps = 17/569 (2%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFL P++ DVD   W T+P + R++ +   W  HGFGTP  V+LLYL KI  Y   G A
Sbjct  1    MGFLAPNMADVDIRQWRTRPYQQRIRPLAEHWAGHGFGTPGIVHLLYLVKITAYALGGIA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            ++SL PG+GG++  G WW +P+VYQK++V+TLL+EVLG GCGSGPL+  F PP+G FL+W
Sbjct  61   VVSLTPGVGGIAHFGSWWAEPLVYQKLVVWTLLYEVLGLGCGSGPLSSHFLPPVGAFLHW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP T+RLP WPD++PFT G  RT  DV LYA VL    W L +              G 
Sbjct  121  LRPGTVRLPPWPDRIPFTSGTRRTAADVTLYAAVLGAAGWLLCA----------PGGPGA  170

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
             G+  P  V     AL +LGLRDKT+FLAAR EHY L L VF FP  D  AA K+IML L
Sbjct  171  AGVAAPWRVAVLAAALALLGLRDKTVFLAARAEHYGLTLLVFLFPAADMTAALKLIMLAL  230

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            WWGAATSKLN HFP+VVAVM SN+ L  +     +K  LYR + +DLRPS L    AHGG
Sbjct  231  WWGAATSKLNRHFPFVVAVMISNSPLRPAW----LKRRLYRHYPDDLRPSGLAAAAAHGG  286

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
             T  E++VP +LVL + G       +  MV+FHL+I+S  PMGVPLEWNVFFI+S   LF
Sbjct  287  -TVIEYVVPLVLVL-SHGGTVTTVALAVMVVFHLHIMSTFPMGVPLEWNVFFIYSALVLF  344

Query  361  GHYGAITATDLRSPLLLAI-VIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRG  419
            GH  A+ A  L SP L A+ V+++V V ++G++ P+ +SFLP+MRYYAGNWAT +WCFR 
Sbjct  345  GHDAAVGAFALHSPALAAVLVLSLVMVPVLGHVRPDLVSFLPSMRYYAGNWATGLWCFRK  404

Query  420  DAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRALDD  479
              E  +   +VK+S L V+QL +LY   TAE++  +  A+RAMH+HGRAL GLLPRA+DD
Sbjct  405  GTEHRLNEHIVKASGLPVDQLTRLYGADTAELVLHQGLAWRAMHSHGRALVGLLPRAVDD  464

Query  480  EAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHVQK  539
               Y +REGE+VAG ++GWNFG+GHLHNEQLVAAVQ+RC FA G+LRV++LE QP H  +
Sbjct  465  VESYDVREGEMVAGAVLGWNFGDGHLHNEQLVAAVQQRCGFAPGELRVVLLESQPTHRSR  524

Query  540  QWYRIVDAKTGLFEAGYVTVEDMLSRQPW  568
            Q YRIVDA +GL E GYV V DM+ RQPW
Sbjct  525  QHYRIVDAASGLIEEGYVNVRDMVVRQPW  553


>gi|183984300|ref|YP_001852591.1| hypothetical protein MMAR_4329 [Mycobacterium marinum M]
 gi|183177626|gb|ACC42736.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=577

 Score =  526 bits (1354),  Expect = 6e-147, Method: Compositional matrix adjust.
 Identities = 283/585 (49%), Positives = 376/585 (65%), Gaps = 15/585 (2%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP LP VD   W    R  +++ + R W E GFGTP  ++L Y+ KI +Y+  G  
Sbjct  5    MGFLKPVLPQVDIVEWGKGTRSEKIRPMARHWAEVGFGTPVVMHLFYVGKILLYILVGWL  64

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G + +  W+T+PIV+QKV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  65   IVFSTKGIEGFTDVKSWYTEPIVFQKVVLYTMLFEVVGLGCGFGPLNNRFFPPMGSSLYW  124

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LR  TIRLP WP++VP+T G  R  VDVALYA++LI  V AL + GS    G        
Sbjct  125  LRFGTIRLPPWPERVPWTAGTKRKPVDVALYALLLIMLVTALFTDGS----GPMPELGSK  180

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGL+    +V  ++ L ++GLRDK IFLAARGE Y      F     D I A K++ L +
Sbjct  181  VGLLPMWEIVMILLLLAMVGLRDKVIFLAARGEVYGTLTVTFLLGGIDMIVAAKLVFLVI  240

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            W GAATSKLN HFP+V++ M SNN L R R    IK + +    +DLRP  L +++AH  
Sbjct  241  WMGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFAKFPDDLRPGLLSRMLAH-L  296

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
             T  E  VP  L L   G P     I  MV FHL IL+ +PMGVPLEWNVF IF +  LF
Sbjct  297  STFIEMFVPVALFLSHGGWPTTAAAIA-MVCFHLGILTAIPMGVPLEWNVFMIFGVLALF  355

Query  361  GHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRG  419
              +  +  TD++SP+ +AI+ AVVA +VI+GNL P KISFLP MRYYAGNW T++WC + 
Sbjct  356  VGHADLGLTDVKSPVPVAILFAVVAGIVILGNLFPRKISFLPGMRYYAGNWDTTLWCIKP  415

Query  420  DAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRAL--  477
             A+A ++  +V  +++   QL + Y    A+I      AFRAM+THGRAL  L  RA+  
Sbjct  416  SADAKIKRGIVAIASMPQAQLERFYGKDRAQIPMYLGYAFRAMNTHGRALFTLAHRAMAG  475

Query  478  DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHV  537
             DE  Y I +GE +    VGWNFG+GH+HNEQL+AA+Q+RCNF  G++R+++L+ QPIH 
Sbjct  476  QDEDDYVITDGERICSTAVGWNFGDGHMHNEQLIAAMQQRCNFEPGEVRIVLLDAQPIHK  535

Query  538  QKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQ  582
            Q Q YR+VDA TG FE G+V V DM++RQPW    D+ PV V ++
Sbjct  536  QTQAYRLVDAATGEFERGWVRVSDMVTRQPW---ADDVPVQVQSE  577


>gi|118616036|ref|YP_904368.1| hypothetical protein MUL_0139 [Mycobacterium ulcerans Agy99]
 gi|118568146|gb|ABL02897.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=573

 Score =  526 bits (1354),  Expect = 6e-147, Method: Compositional matrix adjust.
 Identities = 283/585 (49%), Positives = 376/585 (65%), Gaps = 15/585 (2%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP LP VD   W    R  +++ + R W E GFGTP  ++L Y+ KI +Y+  G  
Sbjct  1    MGFLKPVLPQVDIVEWGKGTRSEKIRPMARHWAEVGFGTPVVMHLFYVGKILLYILVGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G + +  W+T+PIV+QKV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVFSTKGIEGFTDVKSWYTEPIVFQKVVLYTMLFEVVGLGCGFGPLNNRFFPPMGSSLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LR  TIRLP WP++VP+T G  R  VDVALYA++LI  V AL + GS    G        
Sbjct  121  LRFGTIRLPPWPERVPWTAGTKRKPVDVALYALLLIMLVTALFTDGS----GPMPELGSK  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGL+    +V  ++ L ++GLRDK IFLAARGE Y      F     D I A K++ L +
Sbjct  177  VGLLPMWEIVMILLLLAMVGLRDKVIFLAARGEVYGTLTVTFLLGGIDMIVAAKLVFLVI  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            W GAATSKLN HFP+V++ M SNN L R R    IK + +    +DLRP  L +++AH  
Sbjct  237  WMGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFAKFPDDLRPGLLSRMLAH-L  292

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
             T  E  VP  L L   G P     I  MV FHL IL+ +PMGVPLEWNVF IF +  LF
Sbjct  293  STFIEMFVPVALFLSHGGWPTTAAAIA-MVCFHLGILTAIPMGVPLEWNVFMIFGVLALF  351

Query  361  GHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRG  419
              +  +  TD++SP+ +AI+ AVVA +VI+GNL P KISFLP MRYYAGNW T++WC + 
Sbjct  352  VGHADLGLTDVKSPVPVAILFAVVAGIVILGNLFPRKISFLPGMRYYAGNWDTTLWCIKP  411

Query  420  DAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRAL--  477
             A+A ++  +V  +++   QL + Y    A+I      AFRAM+THGRAL  L  RA+  
Sbjct  412  SADAKIKRGIVAIASMPQAQLERFYGKDRAQIPMYLGYAFRAMNTHGRALFTLAHRAMAG  471

Query  478  DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIHV  537
             DE  Y I +GE +    VGWNFG+GH+HNEQL+AA+Q+RCNF  G++R+++L+ QPIH 
Sbjct  472  QDEDDYVITDGERICSTAVGWNFGDGHMHNEQLIAAMQQRCNFEPGEVRIVLLDAQPIHK  531

Query  538  QKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQ  582
            Q Q YR+VDA TG FE G+V V DM++RQPW    D+ PV V ++
Sbjct  532  QTQAYRLVDAATGEFERGWVRVSDMVTRQPW---ADDVPVQVQSE  573


>gi|240170232|ref|ZP_04748891.1| hypothetical protein MkanA1_13028 [Mycobacterium kansasii ATCC 
12478]
Length=578

 Score =  521 bits (1342),  Expect = 1e-145, Method: Compositional matrix adjust.
 Identities = 278/589 (48%), Positives = 376/589 (64%), Gaps = 21/589 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP+LP VD   W    R  +++ + R W E GFGTP A++L Y+ KI +Y+     
Sbjct  1    MGFLKPELPQVDVAEWSKGTRSEKIRPMARHWAEVGFGTPVALHLFYVVKIGLYILGAWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            ++    G+ G + +  W+++PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   VVLSTKGIDGFTNVRSWYSEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPLGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            LRPNTIRLP WP +V  T+G  R  +DV LYA +L+  +WAL S G+      PV   G 
Sbjct  121  LRPNTIRLPPWPGRVALTRGTARAPIDVLLYAALLVMTLWALFSDGT-----GPVPELGT  175

Query  180  DVGLINPVLVVPTIVA-LGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIML  238
             VGL+ PV  + TI+A L V GLRDK IFLAARGE Y      F F   D I A K++ L
Sbjct  176  KVGLL-PVWQIWTILAILAVAGLRDKVIFLAARGEVYASLTVTFLFGGADLIVAAKLVFL  234

Query  239  CLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAH  298
             +W GAATSKLN HFP+V++ M SNN L+R R    IK   +    +DLRP  L +++AH
Sbjct  235  VIWMGAATSKLNKHFPFVISTMMSNNPLIRPRF---IKRRFFEKFPDDLRPGRLSRIIAH  291

Query  299  GGGTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLC  357
               T  E  VP +L     G  W   +  F MV FHL IL+ +PMGVPLEWNVF IF + 
Sbjct  292  -VSTFIEMAVPVVLFFAHGG--WPTAVAAFVMVCFHLGILTAIPMGVPLEWNVFMIFGVL  348

Query  358  YLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWC  416
             LF  +  +  TD+++P+ + I+ AVVA  V++GN+ P KISFLP MRYYAGNW T++WC
Sbjct  349  SLFVGHAELGLTDVKNPVPVGILFAVVAGTVVLGNVFPRKISFLPGMRYYAGNWDTTLWC  408

Query  417  FRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPRA  476
             +  A   +   +V  +++   QL + Y    A+I      AFRAM+THGRAL  L  RA
Sbjct  409  IKPSASEKIGKGIVAIASMPAAQLERFYGKDKAQIPMYLGYAFRAMNTHGRALFTLAHRA  468

Query  477  L--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQP  534
            +   +E  Y I +GE +    +GWNFG+GH+HNEQL+AA+Q RC+F  G++R+++L+ QP
Sbjct  469  MAGQNEDDYVITDGERICSTAIGWNFGDGHMHNEQLIAAMQERCHFEPGEVRIVLLDAQP  528

Query  535  IHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQR  583
            IH Q Q YR+VDA TG FE GYV V DM++RQPW    D+ PVH+ +  
Sbjct  529  IHKQTQAYRLVDAATGEFERGYVRVADMVTRQPW---ADDVPVHLLSDE  574


>gi|145222701|ref|YP_001133379.1| hypothetical protein Mflv_2113 [Mycobacterium gilvum PYR-GCK]
 gi|145215187|gb|ABP44591.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=576

 Score =  516 bits (1330),  Expect = 4e-144, Method: Compositional matrix adjust.
 Identities = 278/588 (48%), Positives = 364/588 (62%), Gaps = 19/588 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLK D P VD+  W    R  R+  + R W E GFGTP  ++L Y+ KI +YV     
Sbjct  1    MGFLKQDAPVVDYAEWSKGTRAERIVPMARHWAEVGFGTPVVIHLFYVVKILLYVLVAWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G + +  W+ +PIVYQKV+ +T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLSTSGIDGFTDVAAWYHEPIVYQKVVFYTMLFEVVGLGCGFGPLNNRFFPPMGSVLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WP++VP T GDTRT VDV LYA +L   V AL S G+      P+   G 
Sbjct  121  LRPRTIRLPPWPNRVPLTAGDTRTPVDVVLYAALLAVLVIALFSDGT-----GPIPEIGS  175

Query  181  VGLINPVLVVPTIVALGVL-GLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
               + PV    TI+ L V+ GLRDK IFLAARGE Y      F F   D I A K++ L 
Sbjct  176  EVGVLPVWQTATIIGLLVVAGLRDKVIFLAARGEVYGSLAVCFLFSGADIIIAAKLVCLT  235

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M SNN ++R R    IK   +    +DLRP    +++AH 
Sbjct  236  IWIGAATSKLNKHFPFVISTMMSNNPVIRPR---SIKRKFFEHFPDDLRPGRASRVLAH-  291

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCY  358
              T  E LVP +L     G  W   +  F M++FH  ILS +PMGVPLEWNVF +FS+  
Sbjct  292  FSTAIEMLVPLVLFFSHGG--WPTAIAAFVMLVFHFGILSAIPMGVPLEWNVFMMFSVLA  349

Query  359  LFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            LF     I   DL+SP  + +   V   V++GNL P K+SFLP MRYYAGNW T++WC +
Sbjct  350  LFVGNAGIGLGDLQSPWPIVLFAVVAGTVVIGNLFPRKVSFLPGMRYYAGNWDTTLWCVK  409

Query  419  GDAEATMETSVVKSSALVVNQLAKLY-DGATAEIMTDKVAAFRAMHTHGRALNGLLPRAL  477
              A   + + +V  +++   Q+ K Y    TAE+      AFR+ +THGRA+  L  RA+
Sbjct  410  PSASEKITSGIVAIASMPAAQMEKFYGSKETAEMYQYMGYAFRSFNTHGRAMFTLAHRAM  469

Query  478  --DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               DE  Y + +GE +    +GWNFG+GH+HNEQL+ A+Q+RC F  G++RV+IL+ QPI
Sbjct  470  AGQDEGEYVLTDGERICSTAIGWNFGDGHMHNEQLITALQKRCRFEPGEVRVLILDAQPI  529

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQR  583
            H Q+Q YR+VDA TG FE GYV V DM++RQPW    D  PVHVT Q+
Sbjct  530  HKQRQEYRLVDAATGEFERGYVMVADMVTRQPW---DDTVPVHVTWQK  574


>gi|120405543|ref|YP_955372.1| hypothetical protein Mvan_4591 [Mycobacterium vanbaalenii PYR-1]
 gi|119958361|gb|ABM15366.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=574

 Score =  511 bits (1317),  Expect = 1e-142, Method: Compositional matrix adjust.
 Identities = 275/588 (47%), Positives = 365/588 (63%), Gaps = 19/588 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLK D P VD+  W    R  R+  + R W E GFGTP  ++L Y+ KI +Y+     
Sbjct  1    MGFLKQDAPVVDYAEWSKGTRAERIVPMARHWAEVGFGTPVVLHLFYVVKILLYILVAWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G + +  W+ +PIVYQKV+ +T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLTTSGIDGFTNVAAWYHEPIVYQKVVFYTMLFEVVGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WP++VP T GD+RT  DV LYA +L+  ++AL S G+      P+   G 
Sbjct  121  LRPRTIRLPPWPNRVPLTAGDSRTPFDVLLYAALLVMLLFALFSDGT-----GPIPELGS  175

Query  181  VGLINPVLVVPTIVALGVL-GLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
               + PV    TI+ L V+ GLRDK IFLAARGE Y      F F   D I A K++ L 
Sbjct  176  EVGVLPVWQTATIIGLLVVAGLRDKVIFLAARGEVYGSLAVCFLFSGADIIIAAKLVCLV  235

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M SNN ++R R    IK   +    +DLRP    + +AH 
Sbjct  236  IWLGAATSKLNKHFPFVISTMMSNNPVMRPRW---IKRKFFEHFPDDLRPGRASRFLAH-  291

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCY  358
              T  E LVP +L     G  W   +  F M++FH  ILS +PMGVPLEWNVF +FS+  
Sbjct  292  FSTAIEGLVPLVLFFSHGG--WATAIAAFVMLVFHFGILSAIPMGVPLEWNVFMMFSVLA  349

Query  359  LFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            LF     I   DL+SP  + +  AV   V++GNL P K+SFLP MRYYAGNW T++WC +
Sbjct  350  LFVGNAGIGLADLQSPWPILLFAAVAGTVVIGNLFPRKVSFLPGMRYYAGNWDTTLWCVK  409

Query  419  GDAEATMETSVVKSSALVVNQLAKLY-DGATAEIMTDKVAAFRAMHTHGRALNGLLPRAL  477
              A   +   +V  +++   Q+ K Y    TAE+      AFR+ +THGRA+  L  RA+
Sbjct  410  PSAAEKIANGIVAIASMPAAQMEKFYGSKETAEVYQYMGYAFRSFNTHGRAMFTLAHRAM  469

Query  478  DD--EAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
             D  E  Y + +GE +    +GWNFG+GH+HNEQL+AA+Q+RC F  G++RV++L+ QPI
Sbjct  470  ADGSEDDYVLTDGERICSTAIGWNFGDGHMHNEQLIAALQKRCQFEPGEVRVLLLDAQPI  529

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQR  583
            H Q+Q YR+VDA TG FE GYV V DM++RQPW    D  PVHVT +R
Sbjct  530  HRQRQEYRLVDAATGEFERGYVMVADMVTRQPW---DDTVPVHVTWRR  574


>gi|315443165|ref|YP_004076044.1| hypothetical protein Mspyr1_15390 [Mycobacterium sp. Spyr1]
 gi|315261468|gb|ADT98209.1| hypothetical protein Mspyr1_15390 [Mycobacterium sp. Spyr1]
Length=576

 Score =  509 bits (1310),  Expect = 7e-142, Method: Compositional matrix adjust.
 Identities = 274/590 (47%), Positives = 368/590 (63%), Gaps = 19/590 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLK D P VD+  W    R  R+  + R W E GFGTP  ++L Y+ KI +Y      
Sbjct  1    MGFLKQDAPVVDYAEWSKGTRAERIVPMARHWAEVGFGTPVVMHLFYVVKILLYALVAWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G + + DW+ +PIVYQKV+ +T+LFE++G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLSTSGIDGFTNVADWYHEPIVYQKVVFYTMLFEIVGLGCGFGPLNNRFFPPMGSVLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WP++VP T GD+RT  DVALY  +L+  ++AL S G+      P++  G 
Sbjct  121  LRPRTIRLPPWPNRVPLTAGDSRTPFDVALYGALLVALLFALFSDGT-----GPISEIGS  175

Query  181  VGLINPVLVVPTIVALGVL-GLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
               + PV    TI+ L VL GLRDK +FLAARGE Y      F F   D I A K++ L 
Sbjct  176  EVGVLPVWQTATIIGLLVLAGLRDKVLFLAARGEVYGSLAVCFLFSGADIIIAAKLVCLV  235

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M SNN ++R R    IK   +    +DLRP    +++AH 
Sbjct  236  IWIGAATSKLNKHFPFVISTMMSNNPVIRPR---SIKRKFFEHFPDDLRPGRASRVLAH-  291

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCY  358
              T  E LVP +L     G  W   +  F M++FH  ILS +PMGVPLEWNVF +FS+  
Sbjct  292  FSTAIEMLVPLVLFFSHGG--WPTAIAAFVMLVFHFGILSAIPMGVPLEWNVFMMFSVLA  349

Query  359  LFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            LF     I   DL+SP  + +   V   V++GNL P K+SFLP MRYYAGNW T++WC +
Sbjct  350  LFVGNAGIGIGDLQSPWPIVLFAVVAGTVVIGNLFPRKVSFLPGMRYYAGNWDTTLWCVK  409

Query  419  GDAEATMETSVVKSSALVVNQLAKLY-DGATAEIMTDKVAAFRAMHTHGRALNGLLPRAL  477
              A   +   +V  +++   Q+ K Y    TAE+      AFR+ +THGRA+  L  R +
Sbjct  410  PSASDKITNGIVAIASMPAAQMEKFYGSKETAEMYQYMGYAFRSFNTHGRAMFTLAHRLM  469

Query  478  DD--EAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
             D  EA Y + +GE +    +GWNFG+GH+HNEQL+AA+Q+RC+F  G++RV+IL+ QPI
Sbjct  470  ADGNEADYVLTDGERICSTAIGWNFGDGHMHNEQLIAALQKRCHFEPGEVRVLILDAQPI  529

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGT  585
            H Q+Q YR+VDA TG FE GYV V DM++RQPW    D  P H+T Q+G+
Sbjct  530  HKQRQEYRLVDAATGEFERGYVMVADMVTRQPW---DDTVPAHITWQKGS  576


>gi|343926347|ref|ZP_08765852.1| hypothetical protein GOALK_060_00110 [Gordonia alkanivorans NBRC 
16433]
 gi|343763585|dbj|GAA12778.1| hypothetical protein GOALK_060_00110 [Gordonia alkanivorans NBRC 
16433]
Length=582

 Score =  503 bits (1294),  Expect = 5e-140, Method: Compositional matrix adjust.
 Identities = 273/587 (47%), Positives = 364/587 (63%), Gaps = 24/587 (4%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLK   PD+D  TW    R  +++ + R W E GFGTP A++L Y+ KI  Y+  G A
Sbjct  1    MGFLKQTTPDIDFPTWSQGTRAEKIRPMARHWAEVGFGTPVALHLFYVGKILAYILIGWA  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+   PG+ G   + DW+ +PIV+QKV+++T+LFEV+GFGCG GPL  RF+PP G  LYW
Sbjct  61   IVISTPGIDGFFAVTDWYNEPIVFQKVVLYTMLFEVVGFGCGFGPLNNRFFPPFGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIR P WP ++P T GDTRT VDVALY  +++  + AL SPGS   G  P      
Sbjct  121  LRPKTIRQPPWP-RIPLTTGDTRTPVDVALYGALIVVVLIALFSPGS---GAVPALDT-T  175

Query  181  VGLINPVLVVPTIVA-LGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
            VG++ PV  + TI+A L  +GLRDKT+FLAARGE Y      F F   D I   K++ LC
Sbjct  176  VGVL-PVWQIWTILALLAAIGLRDKTVFLAARGEVYGALTVTFLFSGVDMIIGAKLMFLC  234

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V+A M SNN + RS     IK   + D  +DLRP    + +AH 
Sbjct  235  IWLGAATSKLNKHFPFVIATMMSNNPIWRS---PKIKRKFFEDFPDDLRPGRRSRWIAH-  290

Query  300  GGTTAEFLVPGILVLVADGHPWRW---FLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSL  356
              T  E LVP +L     G    W        M++FH  ILS++PMGVPLEWNVF +F +
Sbjct  291  FSTAIEGLVPIVLFFSHGG----WVGGIAAAIMLVFHFGILSSIPMGVPLEWNVFMMFGI  346

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWC  416
              +F  +  I  TDL SP  +         V++GNL+P K+SFLP MRYYAGNW T +WC
Sbjct  347  LAIFVGHPGIGLTDLESPWPILFFAVSATTVVVGNLMPRKVSFLPGMRYYAGNWDTGLWC  406

Query  417  FRGDAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
             +  A A +E  +V  +++   QL + Y     A+I      AFRA ++HGRAL  L  +
Sbjct  407  IKPSASAKIEAGIVAIASMPAAQLERFYGSPEAAQIPLYMGYAFRAFNSHGRALFTLAHK  466

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            A+    E  Y + +GE +    +GWNFG+GHL NEQL+ ++QRRC+F  G++R+++L+ Q
Sbjct  467  AMAPTPEEQYVLTDGERICSTAMGWNFGDGHLSNEQLIESLQRRCHFEPGEVRIVLLDAQ  526

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVT  580
            PIH Q Q YR++D  TG+FE GYV V D+++RQPW    DE P  VT
Sbjct  527  PIHRQTQEYRLLDPATGIFERGYVRVADLVTRQPW---DDEVPTTVT  570


>gi|108801046|ref|YP_641243.1| hypothetical protein Mmcs_4082 [Mycobacterium sp. MCS]
 gi|119870188|ref|YP_940140.1| hypothetical protein Mkms_4158 [Mycobacterium sp. KMS]
 gi|108771465|gb|ABG10187.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119696277|gb|ABL93350.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=592

 Score =  503 bits (1294),  Expect = 5e-140, Method: Compositional matrix adjust.
 Identities = 277/596 (47%), Positives = 373/596 (63%), Gaps = 21/596 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKPD+P VD   W    R  +++ + R W E GFGTP  ++L Y+ KI +Y+  G  
Sbjct  1    MGFLKPDMPVVDFAEWSKGTRSEKIRPMARHWAEVGFGTPVVMHLFYVVKILLYILGGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
                  G+ G + +  WWT+PIV+QKV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   FALATHGVDGFTDVAQWWTEPIVFQKVVLYTMLFEVVGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WPD+VP T+GDTRT  D ALY  +L+  + AL S G+      PV A G 
Sbjct  121  LRPGTIRLPPWPDRVPLTKGDTRTPFDAALYGALLVVLLVALFSDGT-----GPVPALGT  175

Query  181  VGLINPVLVVPTIVA-LGVLGLRDKTIFLAARGEHY--WLKLFVFFFPFTDQIAAFKIIM  237
               + P+  + TI+  L VLGLRDK IFLAARGE Y  +   F+F     D + A K++ 
Sbjct  176  EIGVLPLWQIWTILGLLAVLGLRDKVIFLAARGEVYGSFTVAFLFVGYGVDMLLAAKLVC  235

Query  238  LCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMA  297
            + +W GAATSKLN HFP+V++ M SNN L+R++    +K   +    +DLRP  + +++A
Sbjct  236  VAIWMGAATSKLNKHFPFVISTMMSNNPLIRTK---SLKRRFFEKFPDDLRPGRVSRVIA  292

Query  298  HGGGTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            H   T  E LVP  L+    G  W   +  F M++FH  ILS +PMGVPLEWNVF +F +
Sbjct  293  H-FSTAIEMLVPLALLFSHGG--WPTAIAAFVMLVFHFGILSAIPMGVPLEWNVFMMFCV  349

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWC  416
              LF  +  +   +L +PL + +   +   V +GNL P KISFLP MRYYAGNW T+ WC
Sbjct  350  ITLFVGHADLGLAELSTPLPVVLFAVLALTVALGNLFPRKISFLPGMRYYAGNWDTTWWC  409

Query  417  FRGDAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
             +  A   +E  +V  +++  +QL K+Y     A I   K  AFR  ++HG+AL  L+  
Sbjct  410  IKPSANEKIERGLVAIASMPASQLEKVYGSPEQAMIYLYKGYAFRGFNSHGKALLTLVHN  469

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            AL   +E  Y I EGE +    VGWNFG+GH+HNEQL+AA+QRRC F  G++RVI+L+ Q
Sbjct  470  ALAGRNEDDYVITEGERLCSTAVGWNFGDGHMHNEQLIAAMQRRCQFEPGEVRVILLDAQ  529

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            PIH Q+Q YR+VDA TG FE GYV V DM++ QPW    D+ PVHVT +R     P
Sbjct  530  PIHRQRQEYRLVDAATGEFERGYVNVSDMVTGQPWT---DDIPVHVTWRRDGDDAP  582


>gi|340626144|ref|YP_004744596.1| hypothetical protein MCAN_11411 [Mycobacterium canettii CIPT 
140010059]
 gi|340004334|emb|CCC43477.1| conserved membrane protein [Mycobacterium canettii CIPT 140010059]
Length=576

 Score =  502 bits (1293),  Expect = 7e-140, Method: Compositional matrix adjust.
 Identities = 281/586 (48%), Positives = 375/586 (64%), Gaps = 20/586 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFL+P LPD+D   W    R  +++ + + W E GFGTP  ++L Y+ KI +YV  G  
Sbjct  1    MGFLQPRLPDIDLAEWSQGSRSQKIRPMAQHWAEVGFGTPVLLHLFYVAKILLYVLVGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G +    W+ +PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLTTKGIDGFTDAAAWYAEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VP+T+G  R  VDVALYA++++  + AL + G+      P+   G 
Sbjct  121  MRFGTIRLPPWPDRVPWTRGTKRKPVDVALYALLVMMLLSALFTDGA-----GPIPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPF---TDQIAAFKII  236
             VGL+    +V  ++ LGVLGLRDK IFLAARGE Y      F F      D I A K++
Sbjct  176  TVGLLPAWQIVLILLLLGVLGLRDKVIFLAARGEVYATLTVTFLFGRLNGIDMIVAAKLV  235

Query  237  MLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLM  296
             L +W GAATSKLN HFP+V++ M SNN L R R    IK + ++    DLRP  L +++
Sbjct  236  FLVIWIGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFKKFPGDLRPGLLSRIV  292

Query  297  AHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            AH   T  E  VP +L +   G P        MV FHL IL+ +PMGVPLEWNVF IF +
Sbjct  293  AH-VSTVIEMCVPVVLFVAHGGWP-TVVAATIMVCFHLGILTAIPMGVPLEWNVFMIFGV  350

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIW  415
              LF  +  +   D+++P+ LAI+IAVVA +VI GN+ P KISFL AMRYYAGNW T++W
Sbjct  351  LSLFVGHACLGLADVKNPVPLAILIAVVAGIVIAGNVFPRKISFLAAMRYYAGNWDTTLW  410

Query  416  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
            C +  AE  +   +V  +++   QL + Y    A+I      AFRAM++HGRAL  L  R
Sbjct  411  CIKPSAEDKINRGIVAIASMPAAQLERFYGKDRAQIPMYLGYAFRAMNSHGRALFTLAHR  470

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            A+   DE  Y I +GE V    VGWNFG+GHLHNEQL+AA+Q+RC F  G++RV++L+ Q
Sbjct  471  AMAGHDEDDYVITDGERVCSTAVGWNFGDGHLHNEQLIAAMQQRCGFQPGEVRVVLLDAQ  530

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
            PIH Q Q YR+VDA TG FE GYV V DM++RQPW    D+ PVHV
Sbjct  531  PIHRQTQEYRLVDAATGEFERGYVRVADMVTRQPW---DDDVPVHV  573


>gi|15608272|ref|NP_215648.1| hypothetical protein Rv1132 [Mycobacterium tuberculosis H37Rv]
 gi|121637064|ref|YP_977287.1| hypothetical protein BCG_1193 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148660918|ref|YP_001282441.1| hypothetical protein MRA_1141 [Mycobacterium tuberculosis H37Ra]
 46 more sequence titles
 
gi|148822346|ref|YP_001287100.1| hypothetical protein TBFG_11155 [Mycobacterium tuberculosis F11]
 gi|224989537|ref|YP_002644224.1| hypothetical protein JTY_1166 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253799827|ref|YP_003032828.1| hypothetical protein TBMG_02850 [Mycobacterium tuberculosis KZN 
1435]
 gi|254231406|ref|ZP_04924733.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|254364037|ref|ZP_04980083.1| conserved membrane protein [Mycobacterium tuberculosis str. Haarlem]
 gi|289555081|ref|ZP_06444291.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289573785|ref|ZP_06454012.1| conserved membrane protein [Mycobacterium tuberculosis K85]
 gi|289744876|ref|ZP_06504254.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289753199|ref|ZP_06512577.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757222|ref|ZP_06516600.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294993311|ref|ZP_06799002.1| hypothetical protein Mtub2_02107 [Mycobacterium tuberculosis 
210]
 gi|297633672|ref|ZP_06951452.1| hypothetical protein MtubK4_06104 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297730659|ref|ZP_06959777.1| hypothetical protein MtubKR_06194 [Mycobacterium tuberculosis 
KZN R506]
 gi|298524630|ref|ZP_07012039.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306775287|ref|ZP_07413624.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|306971389|ref|ZP_07484050.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|307079117|ref|ZP_07488287.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|307083681|ref|ZP_07492794.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|313657989|ref|ZP_07814869.1| hypothetical protein MtubKV_06199 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339631198|ref|YP_004722840.1| hypothetical protein MAF_11480 [Mycobacterium africanum GM041182]
 gi|2117226|emb|CAB09043.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121492711|emb|CAL71180.1| Conserved membrane protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|124600465|gb|EAY59475.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|134149551|gb|EBA41596.1| conserved membrane protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148505070|gb|ABQ72879.1| hypothetical protein MRA_1141 [Mycobacterium tuberculosis H37Ra]
 gi|148720873|gb|ABR05498.1| conserved membrane protein [Mycobacterium tuberculosis F11]
 gi|224772650|dbj|BAH25456.1| hypothetical protein JTY_1166 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253321330|gb|ACT25933.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439713|gb|EFD22206.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289538216|gb|EFD42794.1| conserved membrane protein [Mycobacterium tuberculosis K85]
 gi|289685404|gb|EFD52892.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289693786|gb|EFD61215.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289712786|gb|EFD76798.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494424|gb|EFI29718.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216219|gb|EFO75618.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308359104|gb|EFP47955.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308363025|gb|EFP51876.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308366674|gb|EFP55525.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|323720414|gb|EGB29508.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326904641|gb|EGE51574.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|328459572|gb|AEB04995.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
 gi|339294124|gb|AEJ46235.1| hypothetical protein CCDC5079_1045 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297764|gb|AEJ49874.1| hypothetical protein CCDC5180_1037 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339330554|emb|CCC26220.1| conserved membrane protein [Mycobacterium africanum GM041182]
 gi|341601080|emb|CCC63752.1| conserved membrane protein [Mycobacterium bovis BCG str. Moreau 
RDJ]
 gi|344218962|gb|AEM99592.1| hypothetical protein MTCTRI2_1163 [Mycobacterium tuberculosis 
CTRI-2]
Length=576

 Score =  502 bits (1292),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 281/586 (48%), Positives = 375/586 (64%), Gaps = 20/586 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFL+P LPD+D   W    R  +++ + + W E GFGTP  ++L Y+ KI +YV  G  
Sbjct  1    MGFLQPRLPDIDLAEWSQGSRSQKIRPMAQHWAEVGFGTPVLLHLFYVAKILLYVLVGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G +    W+ +PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLTTKGIDGFTDAAAWYAEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VP+T+G  R  VDVALYA++++  + AL + G+      P+   G 
Sbjct  121  MRFGTIRLPPWPDRVPWTRGTKRKPVDVALYALLVMMLLSALFTDGA-----GPIPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPF---TDQIAAFKII  236
             VGL+    +V  ++ LGVLGLRDK IFLAARGE Y      F F      D I A K++
Sbjct  176  TVGLLPAWQIVLILLLLGVLGLRDKVIFLAARGEVYATLTVTFLFGRLNGIDMIVAAKLV  235

Query  237  MLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLM  296
             L +W GAATSKLN HFP+V++ M SNN L R R    IK + ++    DLRP  L +++
Sbjct  236  FLVIWIGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFKKFPGDLRPGLLSRIV  292

Query  297  AHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            AH   T  E  VP +L +   G P        MV FHL IL+ +PMGVPLEWNVF IF +
Sbjct  293  AH-VSTVIEMCVPVVLFVAHGGWP-TVVAATIMVCFHLGILTAIPMGVPLEWNVFMIFGV  350

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIW  415
              LF  +  +   D+++P+ LAI+IAVVA +VI GN+ P KISFL AMRYYAGNW T++W
Sbjct  351  LSLFVGHACLGLADVKNPVPLAILIAVVAGIVIAGNVFPRKISFLAAMRYYAGNWDTTLW  410

Query  416  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
            C +  AE  +   +V  +++   QL + Y    A+I      AFRAM++HGRAL  L  R
Sbjct  411  CIKPSAEDKINRGIVAIASMPAAQLERFYGKDRAQIPMYLGYAFRAMNSHGRALFTLAHR  470

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            A+   DE  Y I +GE V    VGWNFG+GHLHNEQL+AA+Q+RC F  G++RV++L+ Q
Sbjct  471  AMAGHDEDDYVITDGERVCSTAVGWNFGDGHLHNEQLIAAMQQRCGFQPGEVRVVLLDAQ  530

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
            PIH Q Q YR+VDA TG FE GYV V DM++RQPW    D+ PVHV
Sbjct  531  PIHRQTQEYRLVDAATGEFERGYVRVADMVNRQPW---DDDVPVHV  573


>gi|289446722|ref|ZP_06436466.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419680|gb|EFD16881.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
Length=576

 Score =  502 bits (1292),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 281/586 (48%), Positives = 375/586 (64%), Gaps = 20/586 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFL+P LPD+D   W    R  +++ + + W E GFGTP  ++L Y+ KI +YV  G  
Sbjct  1    MGFLQPRLPDIDLAEWSQGSRSQKIRPMAQHWAEVGFGTPVLLHLFYVAKILLYVLVGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G +    W+ +PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLTTKGIDGFTDAAAWYAEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VP+T+G  R  VDVALYA++++  + AL + G+      P+   G 
Sbjct  121  MRFGTIRLPPWPDRVPWTRGTKRKPVDVALYALLVMMLLSALFTDGT-----GPIPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPF---TDQIAAFKII  236
             VGL+    +V  ++ LGVLGLRDK IFLAARGE Y      F F      D I A K++
Sbjct  176  TVGLLPAWQIVLILLLLGVLGLRDKVIFLAARGEVYATLTVTFLFGRLNGIDMIVAAKLV  235

Query  237  MLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLM  296
             L +W GAATSKLN HFP+V++ M SNN L R R    IK + ++    DLRP  L +++
Sbjct  236  FLVIWIGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFKKFPGDLRPGLLSRIV  292

Query  297  AHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            AH   T  E  VP +L +   G P        MV FHL IL+ +PMGVPLEWNVF IF +
Sbjct  293  AH-VSTVIEMCVPVVLFVAHGGWP-TVVAATIMVCFHLGILTAIPMGVPLEWNVFMIFGV  350

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIW  415
              LF  +  +   D+++P+ LAI+IAVVA +VI GN+ P KISFL AMRYYAGNW T++W
Sbjct  351  LSLFVGHACLGLADVKNPVPLAILIAVVAGIVIAGNVFPRKISFLAAMRYYAGNWDTTLW  410

Query  416  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
            C +  AE  +   +V  +++   QL + Y    A+I      AFRAM++HGRAL  L  R
Sbjct  411  CIKPSAEDKINRGIVAIASMPAAQLERFYGKDRAQIPMYLGYAFRAMNSHGRALFTLAHR  470

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            A+   DE  Y I +GE V    VGWNFG+GHLHNEQL+AA+Q+RC F  G++RV++L+ Q
Sbjct  471  AMAGHDEDDYVITDGERVCSTAVGWNFGDGHLHNEQLIAAMQQRCGFQPGEVRVVLLDAQ  530

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
            PIH Q Q YR+VDA TG FE GYV V DM++RQPW    D+ PVHV
Sbjct  531  PIHRQTQEYRLVDAATGEFERGYVRVADMVNRQPW---DDDVPVHV  573


>gi|31792326|ref|NP_854819.1| hypothetical protein Mb1163 [Mycobacterium bovis AF2122/97]
 gi|31617914|emb|CAD94024.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
Length=576

 Score =  502 bits (1292),  Expect = 9e-140, Method: Compositional matrix adjust.
 Identities = 281/586 (48%), Positives = 375/586 (64%), Gaps = 20/586 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFL+P LPD+D   W    R  +++ + + W E GFGTP  ++L Y+ KI +YV  G  
Sbjct  1    MGFLQPRLPDIDLAEWSQGSRSQKIRPMAQHWAEVGFGTPVLLHLFYVAKILLYVLVGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G +    W+ +PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLTTKGIDGFTDAAAWYAEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            +R  TIRLP WPD+VP+T+G  R  VDVALYA++++  + AL + G+      P+   G 
Sbjct  121  MRFGTIRLPPWPDRVPWTRGTKRKPVDVALYALLVMMLLSALFTDGA-----GPIPELGT  175

Query  181  -VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPF---TDQIAAFKII  236
             VGL+    +V  ++ LGVLGLRDK IFLAARGE Y      F F      D I A K++
Sbjct  176  MVGLLPAWQIVLILLLLGVLGLRDKVIFLAARGEVYATLTVTFLFGRLNGIDMIVAAKLV  235

Query  237  MLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLM  296
             L +W GAATSKLN HFP+V++ M SNN L R R    IK + ++    DLRP  L +++
Sbjct  236  FLVIWIGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFKKFPGDLRPGLLSRIV  292

Query  297  AHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            AH   T  E  VP +L +   G P        MV FHL IL+ +PMGVPLEWNVF IF +
Sbjct  293  AH-VSTVIEMCVPVVLFVAHGGWP-TVVAATIMVCFHLGILTAIPMGVPLEWNVFMIFGV  350

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIW  415
              LF  +  +   D+++P+ LAI+IAVVA +VI GN+ P KISFL AMRYYAGNW T++W
Sbjct  351  LSLFVGHACLGLADVKNPVPLAILIAVVAGIVIAGNVFPRKISFLAAMRYYAGNWDTTLW  410

Query  416  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
            C +  AE  +   +V  +++   QL + Y    A+I      AFRAM++HGRAL  L  R
Sbjct  411  CIKPSAEDKINRGIVAIASMPAAQLERFYGKDRAQIPMYLGYAFRAMNSHGRALFTLAHR  470

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            A+   DE  Y I +GE V    VGWNFG+GHLHNEQL+AA+Q+RC F  G++RV++L+ Q
Sbjct  471  AMAGHDEDDYVITDGERVCSTAVGWNFGDGHLHNEQLIAAMQQRCGFQPGEVRVVLLDAQ  530

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
            PIH Q Q YR+VDA TG FE GYV V DM++RQPW    D+ PVHV
Sbjct  531  PIHRQTQEYRLVDAATGEFERGYVRVADMVNRQPW---DDDVPVHV  573


>gi|15840570|ref|NP_335607.1| hypothetical protein MT1164 [Mycobacterium tuberculosis CDC1551]
 gi|13880749|gb|AAK45421.1| hypothetical protein MT1164 [Mycobacterium tuberculosis CDC1551]
Length=593

 Score =  502 bits (1292),  Expect = 9e-140, Method: Compositional matrix adjust.
 Identities = 281/586 (48%), Positives = 375/586 (64%), Gaps = 20/586 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFL+P LPD+D   W    R  +++ + + W E GFGTP  ++L Y+ KI +YV  G  
Sbjct  18   MGFLQPRLPDIDLAEWSQGSRSQKIRPMAQHWAEVGFGTPVLLHLFYVAKILLYVLVGWL  77

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G +    W+ +PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  78   IVLTTKGIDGFTDAAAWYAEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  137

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VP+T+G  R  VDVALYA++++  + AL + G+      P+   G 
Sbjct  138  MRFGTIRLPPWPDRVPWTRGTKRKPVDVALYALLVMMLLSALFTDGA-----GPIPELGT  192

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPF---TDQIAAFKII  236
             VGL+    +V  ++ LGVLGLRDK IFLAARGE Y      F F      D I A K++
Sbjct  193  TVGLLPAWQIVLILLLLGVLGLRDKVIFLAARGEVYATLTVTFLFGRLNGIDMIVAAKLV  252

Query  237  MLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLM  296
             L +W GAATSKLN HFP+V++ M SNN L R R    IK + ++    DLRP  L +++
Sbjct  253  FLVIWIGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFKKFPGDLRPGLLSRIV  309

Query  297  AHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            AH   T  E  VP +L +   G P        MV FHL IL+ +PMGVPLEWNVF IF +
Sbjct  310  AH-VSTVIEMCVPVVLFVAHGGWP-TVVAATIMVCFHLGILTAIPMGVPLEWNVFMIFGV  367

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIW  415
              LF  +  +   D+++P+ LAI+IAVVA +VI GN+ P KISFL AMRYYAGNW T++W
Sbjct  368  LSLFVGHACLGLADVKNPVPLAILIAVVAGIVIAGNVFPRKISFLAAMRYYAGNWDTTLW  427

Query  416  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
            C +  AE  +   +V  +++   QL + Y    A+I      AFRAM++HGRAL  L  R
Sbjct  428  CIKPSAEDKINRGIVAIASMPAAQLERFYGKDRAQIPMYLGYAFRAMNSHGRALFTLAHR  487

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            A+   DE  Y I +GE V    VGWNFG+GHLHNEQL+AA+Q+RC F  G++RV++L+ Q
Sbjct  488  AMAGHDEDDYVITDGERVCSTAVGWNFGDGHLHNEQLIAAMQQRCGFQPGEVRVVLLDAQ  547

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
            PIH Q Q YR+VDA TG FE GYV V DM++RQPW    D+ PVHV
Sbjct  548  PIHRQTQEYRLVDAATGEFERGYVRVADMVNRQPW---DDDVPVHV  590


>gi|289442562|ref|ZP_06432306.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289749669|ref|ZP_06509047.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289415481|gb|EFD12721.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289690256|gb|EFD57685.1| conserved membrane protein [Mycobacterium tuberculosis T92]
Length=576

 Score =  502 bits (1292),  Expect = 9e-140, Method: Compositional matrix adjust.
 Identities = 281/586 (48%), Positives = 375/586 (64%), Gaps = 20/586 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFL+P LPD+D   W    R  +++ + + W E GFGTP  ++L Y+ KI +YV  G  
Sbjct  1    MGFLQPGLPDIDLAEWSQGSRSQKIRPMAQHWAEVGFGTPVLLHLFYVAKILLYVLVGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G +    W+ +PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLTTKGIDGFTDAAAWYAEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VP+T+G  R  VDVALYA++++  + AL + G+      P+   G 
Sbjct  121  MRFGTIRLPPWPDRVPWTRGTKRKPVDVALYALLVMMLLSALFTDGA-----GPIPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPF---TDQIAAFKII  236
             VGL+    +V  ++ LGVLGLRDK IFLAARGE Y      F F      D I A K++
Sbjct  176  TVGLLPAWQIVLILLLLGVLGLRDKVIFLAARGEVYATLTVTFLFGRLNGIDMIVAAKLV  235

Query  237  MLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLM  296
             L +W GAATSKLN HFP+V++ M SNN L R R    IK + ++    DLRP  L +++
Sbjct  236  FLVIWIGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFKKFPGDLRPGLLSRIV  292

Query  297  AHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            AH   T  E  VP +L +   G P        MV FHL IL+ +PMGVPLEWNVF IF +
Sbjct  293  AH-VSTVIEMCVPVVLFVAHGGWP-TVVAATIMVCFHLGILTAVPMGVPLEWNVFMIFGV  350

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIW  415
              LF  +  +   D+++P+ LAI+IAVVA +VI GN+ P KISFL AMRYYAGNW T++W
Sbjct  351  LSLFVGHACLGLADVKNPVPLAILIAVVAGIVIAGNVFPRKISFLAAMRYYAGNWDTTLW  410

Query  416  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
            C +  AE  +   +V  +++   QL + Y    A+I      AFRAM++HGRAL  L  R
Sbjct  411  CIKPSAEDKINRGIVAIASMPAAQLERFYGKDRAQIPMYLGYAFRAMNSHGRALFTLAHR  470

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            A+   DE  Y I +GE V    VGWNFG+GHLHNEQL+AA+Q+RC F  G++RV++L+ Q
Sbjct  471  AMAGHDEDDYVITDGERVCSTAVGWNFGDGHLHNEQLIAAMQQRCGFQPGEVRVVLLDAQ  530

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
            PIH Q Q YR+VDA TG FE GYV V DM++RQPW    D+ PVHV
Sbjct  531  PIHRQTQEYRLVDAATGEFERGYVRVADMVNRQPW---DDDVPVHV  573


>gi|126436883|ref|YP_001072574.1| hypothetical protein Mjls_4312 [Mycobacterium sp. JLS]
 gi|126236683|gb|ABO00084.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=592

 Score =  501 bits (1291),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 276/596 (47%), Positives = 374/596 (63%), Gaps = 21/596 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKPD+P VD   W    R  +++ + R W E GFGTP  ++L Y+ KI +Y+  G  
Sbjct  1    MGFLKPDMPVVDFAEWSKGTRSEKIRPMARHWAEVGFGTPVVMHLFYVVKILLYILGGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
                  G+ G + +  WWT+PIV+QKV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   FALATHGVDGFTDVAQWWTEPIVFQKVVLYTMLFEVVGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WPD+VP T+GDTRT  D ALY  +L+  + AL S G+      PV A G 
Sbjct  121  LRPGTIRLPPWPDRVPLTKGDTRTPFDAALYGALLVVLLVALFSDGT-----GPVPALGT  175

Query  181  VGLINPVLVVPTIVA-LGVLGLRDKTIFLAARGEHY--WLKLFVFFFPFTDQIAAFKIIM  237
               + P+  + TI+  L VLGLRDK IFLAARGE Y  +   F+F     D + A K++ 
Sbjct  176  EIGVLPLWQIWTILGLLAVLGLRDKVIFLAARGEVYGSFTVAFLFVGYGVDMLLAAKLVC  235

Query  238  LCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMA  297
            + +W GAATSKLN HFP+V++ M SN+ L+R++    +K   +    +DLRP  + +++A
Sbjct  236  VAIWMGAATSKLNKHFPFVISTMMSNHPLIRTK---SLKRRFFEKFPDDLRPGRVSRVIA  292

Query  298  HGGGTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            H   T  E LVP +L+    G  W   +  F M++FH  ILS +PMGVPLEWNVF +F +
Sbjct  293  H-FSTAIEMLVPLVLLFSHGG--WPTAIAAFVMLVFHFGILSAIPMGVPLEWNVFMMFCV  349

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWC  416
              LF  +  +   +L +PL + +   +   V +GNL P KISFLP MRYYAGNW T+ WC
Sbjct  350  ITLFVGHADLGLAELSTPLPVVLFAVLALTVALGNLFPRKISFLPGMRYYAGNWDTTWWC  409

Query  417  FRGDAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
             +  A   +E  +V  +++  +QL K+Y     A I   K  AFR  ++HG+AL  L+  
Sbjct  410  IKPSANEKIERGLVAIASMPASQLEKVYGSPEQAMIYLYKGYAFRGFNSHGKALLTLVHN  469

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            AL   +E  Y I EGE +    VGWNFG+GH+HNEQL+AA+QRRC F  G++RVI+L+ Q
Sbjct  470  ALAGRNEDDYVITEGERLCSTAVGWNFGDGHMHNEQLIAAMQRRCQFEPGEVRVILLDAQ  529

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            PIH Q+Q YR+VDA TG FE GYV V DM++ QPW    D+ PVHVT +R     P
Sbjct  530  PIHRQRQEYRLVDAATGEFERGYVNVSDMVTGQPWT---DDIPVHVTWRRDGDDAP  582


>gi|306781798|ref|ZP_07420135.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|306783844|ref|ZP_07422166.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|306788206|ref|ZP_07426528.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 13 more sequence titles
 
gi|306792535|ref|ZP_07430837.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306796940|ref|ZP_07435242.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|306802818|ref|ZP_07439486.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|306807000|ref|ZP_07443668.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|306967202|ref|ZP_07479863.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308325439|gb|EFP14290.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308331407|gb|EFP20258.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308335218|gb|EFP24069.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308339025|gb|EFP27876.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308342694|gb|EFP31545.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308346579|gb|EFP35430.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308350502|gb|EFP39353.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308355151|gb|EFP44002.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
Length=576

 Score =  500 bits (1288),  Expect = 2e-139, Method: Compositional matrix adjust.
 Identities = 280/586 (48%), Positives = 375/586 (64%), Gaps = 20/586 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFL+P LPD+D   W    R  +++ + + W E GFGTP  ++L Y+ KI +YV  G  
Sbjct  1    MGFLQPRLPDIDLAEWSQGSRSQKIRPMAQHWAEVGFGTPVLLHLFYVAKILLYVLVGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G +    W+ +PIV++KV+++T+LFE++G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLTTKGIDGFTDAAAWYAEPIVFEKVVLYTMLFELIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VP+T+G  R  VDVALYA++++  + AL + G+      P+   G 
Sbjct  121  MRFGTIRLPPWPDRVPWTRGTKRKPVDVALYALLVMMLLSALFTDGA-----GPIPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPF---TDQIAAFKII  236
             VGL+    +V  ++ LGVLGLRDK IFLAARGE Y      F F      D I A K++
Sbjct  176  TVGLLPAWQIVLILLLLGVLGLRDKVIFLAARGEVYATLTVTFLFGRLNGIDMIVAAKLV  235

Query  237  MLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLM  296
             L +W GAATSKLN HFP+V++ M SNN L R R    IK + ++    DLRP  L +++
Sbjct  236  FLVIWIGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFKKFPGDLRPGLLSRIV  292

Query  297  AHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            AH   T  E  VP +L +   G P        MV FHL IL+ +PMGVPLEWNVF IF +
Sbjct  293  AH-VSTVIEMCVPVVLFVAHGGWP-TVVAATIMVCFHLGILTAIPMGVPLEWNVFMIFGV  350

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIW  415
              LF  +  +   D+++P+ LAI+IAVVA +VI GN+ P KISFL AMRYYAGNW T++W
Sbjct  351  LSLFVGHACLGLADVKNPVPLAILIAVVAGIVIAGNVFPRKISFLAAMRYYAGNWDTTLW  410

Query  416  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
            C +  AE  +   +V  +++   QL + Y    A+I      AFRAM++HGRAL  L  R
Sbjct  411  CIKPSAEDKINRGIVAIASMPAAQLERFYGKDRAQIPMYLGYAFRAMNSHGRALFTLAHR  470

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            A+   DE  Y I +GE V    VGWNFG+GHLHNEQL+AA+Q+RC F  G++RV++L+ Q
Sbjct  471  AMAGHDEDDYVITDGERVCSTAVGWNFGDGHLHNEQLIAAMQQRCGFQPGEVRVVLLDAQ  530

Query  534  PIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
            PIH Q Q YR+VDA TG FE GYV V DM++RQPW    D+ PVHV
Sbjct  531  PIHRQTQEYRLVDAATGEFERGYVRVADMVNRQPW---DDDVPVHV  573


>gi|296170006|ref|ZP_06851611.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895324|gb|EFG75032.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=620

 Score =  496 bits (1276),  Expect = 6e-138, Method: Compositional matrix adjust.
 Identities = 271/591 (46%), Positives = 368/591 (63%), Gaps = 16/591 (2%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP+LP +D   W    R  +++ + + W E GFGTP A++L Y+ KI +Y+     
Sbjct  42   MGFLKPELPQLDMAEWNKGTRSEKIRPMAKHWAEVGFGTPVALHLFYVAKILLYILGAWL  101

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
              S   GLGG + +  WW++PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  102  FASATAGLGGFTNVAKWWSEPIVFEKVVLYTMLFEVVGLGCGFGPLNNRFFPPMGSILYW  161

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            +R  TIRLP WPD+VP T+G  R  +DVALYA+ L+  + AL + G+    G        
Sbjct  162  MRFGTIRLPPWPDRVPLTKGTKRKPIDVALYALFLLVTLSALFADGT----GPMPELGTT  217

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            VGL+    +V  ++ L VLGLRDK IFLAARGE Y      F F   D I   K++ L +
Sbjct  218  VGLLPAWKIVLILLLLAVLGLRDKVIFLAARGEVYATMAVTFLFGGVDMIVGSKVVFLVI  277

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            W GAATSKLN HFP+V++ M SNN L+R R    +K   +    +DLRP  L + +AH  
Sbjct  278  WMGAATSKLNKHFPFVISTMMSNNPLVRPRW---LKRQFFEKFPDDLRPGRLSRWLAH-L  333

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYLF  360
             T  E LVP  L     G P     I  MV FHL IL ++PMGVPLEWNVF IF +  LF
Sbjct  334  STAIEMLVPLPLFFCHSGWPITVAAI-VMVCFHLGILLSIPMGVPLEWNVFMIFGVLSLF  392

Query  361  GHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFRG  419
              +  +   DLR P+++AI+  V+A +V++GN+ P KISFLP MRYYAGNW T++WC + 
Sbjct  393  VAHARLGLRDLRHPVVVAILFVVIAGIVLLGNMFPRKISFLPGMRYYAGNWDTTLWCIKP  452

Query  420  DAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPRAL-  477
             A   +   VV  +++   QL + Y     A+I      AFR  +THGRAL  L  RA+ 
Sbjct  453  SASDKIARGVVAIASMPQAQLERFYGSPEAAQIPLYMGYAFRGFNTHGRALFTLAHRAMA  512

Query  478  -DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPIH  536
              +E  Y + +GE +    +GWNFG+GH+HNEQL+AA+Q RC+F  G++RV++L+ QPIH
Sbjct  513  GQNEDDYVLTDGERICSTAIGWNFGDGHMHNEQLIAALQERCHFEPGEVRVVLLDAQPIH  572

Query  537  VQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPS  587
             Q Q YR+VDA TG FE G V V DM++RQPW    D+ PV + +   TP+
Sbjct  573  KQTQAYRLVDAATGEFERGIVRVADMVTRQPW---ADDVPVELLSGDATPA  620


>gi|254823169|ref|ZP_05228170.1| hypothetical protein MintA_24789 [Mycobacterium intracellulare 
ATCC 13950]
Length=574

 Score =  494 bits (1271),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 268/586 (46%), Positives = 368/586 (63%), Gaps = 18/586 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP+LP +D   W    R  +++ + + W E GFGTP A++L Y+ KI +Y+     
Sbjct  1    MGFLKPELPQLDMAEWNKGSRSDKIRPMAKHWAEVGFGTPVALHLFYVVKILLYILGAWV  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
              S   GLGG +++  WW++PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   FASATRGLGGFTQVASWWSEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSVLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VP T+G  R  +DVALYA+ L+    AL + G+      P+   G 
Sbjct  121  MRFGTIRLPPWPDRVPLTRGTKRKPIDVALYALFLLVTFAALFADGT-----GPIPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
             +GL+    VV  ++ L VLGLRDK IFLAARGE Y      F F   D I   K++ L 
Sbjct  176  TIGLLPAWKVVLILLLLAVLGLRDKVIFLAARGEVYATMAVTFLFAAPDMIVGSKVVFLV  235

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M SNN L+R R    +K   +    +DLRP WL + +AH 
Sbjct  236  IWMGAATSKLNKHFPFVISTMMSNNPLVRPRW---LKRRFFEKFPDDLRPGWLSRWLAH-  291

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
              T  E LVP  L     G P     +  MV FHL IL ++PMGVPLEWNVF IF +  L
Sbjct  292  LSTAIEMLVPLPLFFCHGGWPVTVAAV-VMVCFHLGILVSIPMGVPLEWNVFMIFGVLSL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  +   DL+ P+++AI+  V+A +V++GN+ P KISFLP MRYYAGNW T++WC +
Sbjct  351  FVAHTQLGLADLKHPVVVAILFVVIAGIVLLGNMFPRKISFLPGMRYYAGNWDTTLWCIK  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPRAL  477
              A   +   +V  +++   QL + Y     A+I      AFR  +THGRAL  L  RA+
Sbjct  411  PSANDKIGRGIVAIASMPQAQLERFYGSPEAAQIPLYMGYAFRGFNTHGRALFTLAHRAM  470

Query  478  --DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               +E  Y + +GE +    +GWNFG+GH+HNEQL++A+Q RC+F  G++RV++L+ QPI
Sbjct  471  AGQNEDDYVLTDGERICSTAIGWNFGDGHMHNEQLISALQERCHFEPGEVRVVLLDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTT  581
            H Q Q YR+VDA TG FE G V V DM++RQPW    D+ PV V +
Sbjct  531  HKQTQAYRLVDAATGEFERGIVRVADMVTRQPW---ADDVPVEVVS  573


>gi|254550130|ref|ZP_05140577.1| hypothetical protein Mtube_06679 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289761272|ref|ZP_06520650.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289708778|gb|EFD72794.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=589

 Score =  494 bits (1271),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 281/599 (47%), Positives = 376/599 (63%), Gaps = 33/599 (5%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFL+P LPD+D   W    R  +++ + + W E GFGTP  ++L Y+ KI +YV  G  
Sbjct  1    MGFLQPRLPDIDLAEWSQGSRSQKIRPMAQHWAEVGFGTPVLLHLFYVAKILLYVLVGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            I+    G+ G +    W+ +PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   IVLTTKGIDGFTDAAAWYAEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VP+T+G  R  VDVALYA++++  + AL + G+      P+   G 
Sbjct  121  MRFGTIRLPPWPDRVPWTRGTKRKPVDVALYALLVMMLLSALFTDGA-----GPIPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPF---TDQIAAFKII  236
             VGL+    +V  ++ LGVLGLRDK IFLAARGE Y      F F      D I A K++
Sbjct  176  TVGLLPAWQIVLILLLLGVLGLRDKVIFLAARGEVYATLTVTFLFGRLNGIDMIVAAKLV  235

Query  237  MLCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLM  296
             L +W GAATSKLN HFP+V++ M SNN L R R    IK + ++    DLRP  L +++
Sbjct  236  FLVIWIGAATSKLNRHFPFVISTMMSNNPLFRPRF---IKRMFFKKFPGDLRPGLLSRIV  292

Query  297  AHGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSL  356
            AH   T  E  VP +L +   G P        MV FHL IL+ +PMGVPLEWNVF IF +
Sbjct  293  AH-VSTVIEMCVPVVLFVAHGGWP-TVVAATIMVCFHLGILTAIPMGVPLEWNVFMIFGV  350

Query  357  CYLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIW  415
              LF  +  +   D+++P+ LAI+IAVVA +VI GN+ P KISFL AMRYYAGNW T++W
Sbjct  351  LSLFVGHACLGLADVKNPVPLAILIAVVAGIVIAGNVFPRKISFLAAMRYYAGNWDTTLW  410

Query  416  CFRGDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVAAFRAMHTHGRALNGLLPR  475
            C +  AE  +   +V  +++   QL + Y    A+I      AFRAM++HGRAL  L  R
Sbjct  411  CIKPSAEDKINRGIVAIASMPAAQLERFYGKDRAQIPMYLGYAFRAMNSHGRALFTLAHR  470

Query  476  AL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQ  533
            A+   DE  Y I +GE V    VGWNFG+GHLHNEQL+AA+Q+RC F  G++RV++L+ Q
Sbjct  471  AMAGHDEDDYVITDGERVCSTAVGWNFGDGHLHNEQLIAAMQQRCGFQPGEVRVVLLDAQ  530

Query  534  PIHVQKQWYRIVD-------------AKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHV  579
            PIH Q Q YR+VD             A+TG FE GYV V DM++RQPW    D+ PVHV
Sbjct  531  PIHRQTQEYRLVDAATGEFERGYVRVAETGEFERGYVRVADMVNRQPW---DDDVPVHV  586


>gi|254774483|ref|ZP_05215999.1| hypothetical protein MaviaA2_07408 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=579

 Score =  494 bits (1271),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 274/592 (47%), Positives = 372/592 (63%), Gaps = 18/592 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF++P+LP VD   W  +PR  RL  + R   E+GFGTP  ++++Y  KIA+YV  G  
Sbjct  1    MGFIRPNLPVVDVAEWSARPRAERLVPMARHIAENGFGTPLVMHVMYGVKIALYVLGGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
                  G+GG + +G WW++PIV+QK +++T+LFEV+G GC  GPL GR++PP+G  LYW
Sbjct  61   FAWSTRGIGGFAEVGAWWSEPIVFQKAVLYTMLFEVVGLGCCFGPLAGRYFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WP+++P T+G TRT +D ALY  +L+  V AL+S GS GP     TA   
Sbjct  121  LRPGTIRLPPWPNRIPLTRGSTRTPLDAALYGALLVLLVGALVSDGS-GPIPALDTA---  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            +G++        +  L V+ LRDK IFLAARGE Y     VF F   D +   K+  + +
Sbjct  177  IGVLPRWQTAAILGVLAVIALRDKVIFLAARGEVYAPLALVFLFGGADVVVGAKVAFMVI  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            W GAATSKLN HFP+V++ M +NN  + S    P+K  ++R + +DLRPS L   +AH  
Sbjct  237  WLGAATSKLNRHFPFVISTMLANNPFIPS---GPLKRSMFRRYPDDLRPSALAGFIAH-F  292

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
             T  E LVP  LVL      W   L  F M++FHLNIL   PMGVPLEWNVF IF + +L
Sbjct  293  STAVEGLVP--LVLFCSTGGWPTALAAFVMIVFHLNILLAFPMGVPLEWNVFMIFGVLWL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  +  + +  P  +A++  V+A  V++GNL P K+SFLP MRYYAGNW T++WC R
Sbjct  351  FVAHARVGLSSVADPWPIALLFVVMAGTVVVGNLYPRKVSFLPGMRYYAGNWDTTLWCVR  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVA-AFRAMHTHGRALNGLLPRAL  477
              A+  +         +   QL +LY      ++   +A AFR M+THGRAL  L  RA+
Sbjct  411  PSADEKIRVGARALGPMQHLQLERLYGSKEETLIPLHLALAFRGMNTHGRALLTLAHRAM  470

Query  478  D--DEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               DE  Y + EGE++   ++GWNFG+GHLHNE L+ A+Q+RC F  G++RV+IL+ QPI
Sbjct  471  ADYDEDDYNLCEGEVLCAMVLGWNFGDGHLHNECLIEALQQRCGFEPGEVRVVILDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPS  587
            H Q Q YR+VDA TG FE GY TV+DM + QPW    D+ PV+V T R + S
Sbjct  531  HRQTQEYRLVDAATGEFERGYCTVDDMATAQPW---ADDIPVYVQTGRVSDS  579


>gi|169631626|ref|YP_001705275.1| hypothetical protein MAB_4552 [Mycobacterium abscessus ATCC 19977]
 gi|169243593|emb|CAM64621.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=561

 Score =  493 bits (1270),  Expect = 3e-137, Method: Compositional matrix adjust.
 Identities = 279/591 (48%), Positives = 371/591 (63%), Gaps = 40/591 (6%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAG--  58
            MGFLKP LP VD   W    R  +++ + R W E GFGTP A++L Y+ KIA+Y+  G  
Sbjct  1    MGFLKPTLPVVDVADWGKGTRAEKIRPMARHWAEVGFGTPVALHLFYVLKIALYILGGWL  60

Query  59   AAIISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFL  118
             A+++      G+ R  D+ + PIV+QKV+++T+LFEV+G GCG GPL  RF+PP+G  L
Sbjct  61   FAMVTTE----GIDRWTDF-SLPIVFQKVVLYTMLFEVVGLGCGFGPLNNRFFPPLGSIL  115

Query  119  YWLRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAA  178
            YWLRPNTIRLP WP ++P T+G  RT VD+ALYA  L   + ALLS           TAA
Sbjct  116  YWLRPNTIRLPPWP-RIPLTKGSARTAVDIALYAAFLGMVLVALLSQP---------TAA  165

Query  179  GDVGLINPVLVVPTIVALGVL-GLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIM  237
            G    + P      I+ L V+ GLRDK IFLAARGE Y      F F   D I A K+I 
Sbjct  166  G----LLPTWQTAAILGLLVITGLRDKVIFLAARGEVYGALTVAFLFTGADMIMAAKLIF  221

Query  238  LCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMA  297
            + +W GAATSKLN HFP+V++ M SNN L+R+R    +K   +    +DLRP  L +++A
Sbjct  222  MVIWIGAATSKLNRHFPFVISTMMSNNPLIRAR---RLKRAFFEKFPDDLRPGRLSRVVA  278

Query  298  HGGGTTAEFLVPGILVLVADGHPWRWFLI---GFMVLFHLNILSNLPMGVPLEWNVFFIF  354
            H   T  E LVP  L     G    W      G MV FHL IL+ +PMGVPLEWNVF IF
Sbjct  279  HVS-TAVEGLVPFALFFSHGG----WVTTVAAGVMVCFHLGILTAIPMGVPLEWNVFMIF  333

Query  355  SLCYLFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATS  413
             +  LF  +  +  +D++ P  + +++AV A VV  GNLLP K+SFLP MRYYAGNW T+
Sbjct  334  GVLALFVSHANVGLSDMQHPAPVLLLLAVSAGVVATGNLLPRKVSFLPGMRYYAGNWDTT  393

Query  414  IWCFRGDAEATMETSVVKSSALVVNQLAKLYDGA-TAEIMTDKVAAFRAMHTHGRALNGL  472
            +WC +  A A +E  +V  +++   Q+ + Y     A+I      AFRAM+THGRA+  L
Sbjct  394  LWCIKPSASAKIEKGIVAIASMPQAQMERYYGSKDAAQIYMYIGYAFRAMNTHGRAMFTL  453

Query  473  LPRAL--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIIL  530
              RA+   DE+ Y I +GE +    +GWNFG+GH+HNEQL+AA+Q RC+F  G++R+++L
Sbjct  454  AHRAMAGQDESEYVITDGERICSTAIGWNFGDGHMHNEQLIAAMQERCHFEPGEVRIVLL  513

Query  531  EGQPIHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTT  581
            + QPIH Q Q YR+VDA TG FE+GYV V DM++RQPW    DE PV V +
Sbjct  514  DAQPIHRQTQRYRLVDAATGEFESGYVRVADMVNRQPW---DDELPVQVNS  561


>gi|336461001|gb|EGO39881.1| Transmembrane protein of unknown function (DUF3556) [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=579

 Score =  493 bits (1268),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 273/592 (47%), Positives = 371/592 (63%), Gaps = 18/592 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF++P+LP VD   W  +PR  RL  + R   E+GFGTP  ++++Y  KIA+YV  G  
Sbjct  1    MGFIRPNLPVVDVAEWSARPRAERLVPMARHIAENGFGTPLVMHVMYGVKIALYVLGGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
                  G+GG + +G WW++PIV+QK +++T+LFEV+G GC  GPL GR++PP+G  LYW
Sbjct  61   FAWSTRGIGGFTEVGAWWSEPIVFQKAVLYTMLFEVVGLGCCFGPLAGRYFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WP+++P T+G TRT +D ALY  +L+  V AL+S GS GP     TA   
Sbjct  121  LRPGTIRLPPWPNRIPLTRGSTRTPLDAALYGALLVLLVGALVSDGS-GPIPALETA---  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            +G++        +  L  + LRDK IFLAARGE Y     VF F   D +   K+  + +
Sbjct  177  IGVLPRWQTAAILGVLAAIALRDKVIFLAARGEVYAPLALVFLFGGADVVVGAKVAFMVI  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            W GAATSKLN HFP+V++ M +NN  + S    P+K  ++R + +DLRPS L   +AH  
Sbjct  237  WLGAATSKLNRHFPFVISTMLANNPFIPS---GPLKRSMFRRYPDDLRPSALAGFIAH-F  292

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
             T  E LVP  LVL      W   L  F M++FHLNIL   PMGVPLEWNVF IF + +L
Sbjct  293  STAVEGLVP--LVLFCSTGGWPTALAAFVMIVFHLNILLAFPMGVPLEWNVFMIFGVLWL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  +  + +  P  +A++  V+A  V++GNL P K+SFLP MRYYAGNW T++WC R
Sbjct  351  FLAHAPVGLSSVADPWPIALLFVVMAGTVVVGNLYPRKVSFLPGMRYYAGNWDTTLWCVR  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVA-AFRAMHTHGRALNGLLPRAL  477
              A+  +         +   QL +LY      ++   +A AFR M+THGRAL  L  RA+
Sbjct  411  PSADEKIRVGARALGPMQHLQLERLYGSKEETLIPLHLALAFRGMNTHGRALLTLAHRAM  470

Query  478  D--DEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               DE  Y + EGE++   ++GWNFG+GHLHNE L+ A+Q+RC F  G++RV+IL+ QPI
Sbjct  471  ADYDEDDYNLCEGEVLCAMVLGWNFGDGHLHNECLIEALQQRCGFEPGEVRVVILDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPS  587
            H Q Q YR+VDA TG FE GY TV+DM + QPW    D+ PV+V T R + S
Sbjct  531  HRQTQEYRLVDAATGEFERGYCTVDDMATAQPW---ADDIPVYVQTGRVSDS  579


>gi|41408425|ref|NP_961261.1| hypothetical protein MAP2327 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396781|gb|AAS04644.1| hypothetical protein MAP_2327 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=579

 Score =  493 bits (1268),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 273/592 (47%), Positives = 371/592 (63%), Gaps = 18/592 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF++P+LP VD   W  +PR  RL  + R   E+GFGTP  ++++Y  KIA+YV  G  
Sbjct  1    MGFIRPNLPVVDVAEWSARPRAERLVPMARHIAENGFGTPLVMHVMYGAKIALYVLGGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
                  G+GG + +G WW++PIV+QK +++T+LFEV+G GC  GPL GR++PP+G  LYW
Sbjct  61   FAWSTRGIGGFTEVGAWWSEPIVFQKAVLYTMLFEVVGLGCCFGPLAGRYFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WP+++P T+G TRT +D ALY  +L+  V AL+S GS GP     TA   
Sbjct  121  LRPGTIRLPPWPNRIPLTRGSTRTPLDAALYGALLVLLVGALVSDGS-GPIPALETA---  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            +G++        +  L  + LRDK IFLAARGE Y     VF F   D +   K+  + +
Sbjct  177  IGVLPRWQTAAILGVLAAIALRDKVIFLAARGEVYAPLALVFLFGGADVVVGAKVAFMVI  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            W GAATSKLN HFP+V++ M +NN  + S    P+K  ++R + +DLRPS L   +AH  
Sbjct  237  WLGAATSKLNRHFPFVISTMLANNPFIPS---GPLKRSMFRRYPDDLRPSALAGFIAH-F  292

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
             T  E LVP  LVL      W   L  F M++FHLNIL   PMGVPLEWNVF IF + +L
Sbjct  293  STAVEGLVP--LVLFCSTGGWPTALAAFVMIVFHLNILLAFPMGVPLEWNVFMIFGVLWL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  +  + +  P  +A++  V+A  V++GNL P K+SFLP MRYYAGNW T++WC R
Sbjct  351  FLAHAPVGLSSVADPWPIALLFVVMAGTVVVGNLYPRKVSFLPGMRYYAGNWDTTLWCVR  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVA-AFRAMHTHGRALNGLLPRAL  477
              A+  +         +   QL +LY      ++   +A AFR M+THGRAL  L  RA+
Sbjct  411  PSADEKIRVGARALGPMQHLQLERLYGSKEETLIPLHLALAFRGMNTHGRALLTLAHRAM  470

Query  478  D--DEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               DE  Y + EGE++   ++GWNFG+GHLHNE L+ A+Q+RC F  G++RV+IL+ QPI
Sbjct  471  ADYDEDDYNLCEGEVLCAMVLGWNFGDGHLHNECLIEALQQRCGFEPGEVRVVILDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPS  587
            H Q Q YR+VDA TG FE GY TV+DM + QPW    D+ PV+V T R + S
Sbjct  531  HRQTQEYRLVDAATGEFERGYCTVDDMATAQPW---ADDIPVYVQTGRVSDS  579


>gi|342861729|ref|ZP_08718375.1| hypothetical protein MCOL_22686 [Mycobacterium colombiense CECT 
3035]
 gi|342130863|gb|EGT84159.1| hypothetical protein MCOL_22686 [Mycobacterium colombiense CECT 
3035]
Length=577

 Score =  491 bits (1265),  Expect = 1e-136, Method: Compositional matrix adjust.
 Identities = 271/588 (47%), Positives = 369/588 (63%), Gaps = 18/588 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP+LP +D   W    R  +++ + + W E GFGTP  ++L Y+ KI +Y+     
Sbjct  1    MGFLKPELPQLDMAEWNKGTRSEKIRPMAKHWAEVGFGTPVVLHLFYVVKILLYILGAWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
              S   GLGG +R+  WW++PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   FASATDGLGGFTRVASWWSEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VP T+G  R  VDVALYA+ L+  + AL + G+      P+   G 
Sbjct  121  MRFGTIRLPPWPDRVPLTKGTKRKPVDVALYALFLLVTLAALFADGT-----GPIPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
             +GL+    +V  ++ L V+GLRDK IFLAARGE Y      F F   D I   K++ L 
Sbjct  176  TIGLLPAWKIVLILLLLAVVGLRDKVIFLAARGEVYATMAVTFLFAAPDMIVGSKVVFLV  235

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M SNN L+R R    +K   +    +DLRP  L + +AH 
Sbjct  236  IWMGAATSKLNKHFPFVISTMMSNNPLVRPRW---LKRRFFESFPDDLRPGRLSRWLAH-  291

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
              T  E LVP  L     G P     I  MV FHL IL ++PMGVPLEWNVF IF +  L
Sbjct  292  LSTAIEMLVPLPLFFCHGGWPVTIAAIA-MVCFHLGILVSIPMGVPLEWNVFMIFGVLSL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  I   DLR P+++A++  V+A +V++GN+ P KISFLP MRYYAGNW T++WC +
Sbjct  351  FVAHTHIGLRDLRHPVVVAVLFVVIAGIVVLGNMFPRKISFLPGMRYYAGNWDTTLWCIK  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPRAL  477
            G A   +   +V  +++   QL + Y     A+I      AFR  +THGRAL  L  RA+
Sbjct  411  GSANDKIGRGIVAIASMPQAQLERFYGSPEAAQIPIYMGYAFRGFNTHGRALFTLAHRAM  470

Query  478  --DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               +E  Y I +GE +    +GWNFG+GH+HNEQL+AA+Q RC+F  G++RV++L+ QPI
Sbjct  471  AGQNEDDYVITDGERICSTAIGWNFGDGHMHNEQLIAALQERCHFEPGEVRVVLLDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQR  583
            H Q Q YR+VDA TG FE G V V DM+ RQPW    D+ PV V +++
Sbjct  531  HKQTQTYRLVDAATGEFERGIVRVADMVVRQPW---ADDVPVQVVSEQ  575


>gi|118462498|ref|YP_880889.1| hypothetical protein MAV_1654 [Mycobacterium avium 104]
 gi|118163785|gb|ABK64682.1| conserved membrane protein [Mycobacterium avium 104]
Length=579

 Score =  489 bits (1260),  Expect = 4e-136, Method: Compositional matrix adjust.
 Identities = 272/592 (46%), Positives = 370/592 (63%), Gaps = 18/592 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF++P+LP VD   W  +PR  RL  + R   E+GFGTP  ++++Y  KIA+YV  G  
Sbjct  1    MGFIRPNLPVVDVAEWSARPRAERLVPMARHIAENGFGTPLVMHVMYGVKIALYVLGGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
                  G+GG + +G WW++PIV+QK +++T+LFEV+G GC  GPL GR++PP+G  LYW
Sbjct  61   FAWSTRGIGGFTEVGAWWSEPIVFQKAVLYTMLFEVVGLGCCFGPLAGRYFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WP+++P T+  TRT +D ALY  +L+  V AL+S GS GP     TA   
Sbjct  121  LRPGTIRLPPWPNRIPLTRCSTRTPLDAALYGALLVLLVGALVSDGS-GPIPALDTA---  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            +G++        +  L V+ LRDK IFLAARGE Y     VF F   D +   K+  + +
Sbjct  177  IGVLPRWQTAAILGVLAVIALRDKVIFLAARGEVYAPLALVFLFGGADVVVGAKVAFMVI  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            W GAATSKLN HFP+V++ M +NN  + S    P+K  ++R + +DLRPS L   +AH  
Sbjct  237  WLGAATSKLNRHFPFVISTMLANNPFIPS---GPLKRSMFRRYPDDLRPSALAGFIAH-F  292

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
             T  E LVP  LVL      W   L  F M++FHLNIL   PMGVPLEWNVF IF + +L
Sbjct  293  STAVEGLVP--LVLFCSTGGWPTALAAFVMIVFHLNILLAFPMGVPLEWNVFMIFGVLWL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  +  + +  P  +A++  V+A  V++GNL P K+SFLP MRYYAGNW T++WC R
Sbjct  351  FVAHAPVGLSSVADPWPIALLFVVMAGTVVVGNLYPRKVSFLPGMRYYAGNWDTTLWCVR  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVA-AFRAMHTHGRALNGLLPRAL  477
              A+  +         +   QL +LY      ++   +A AFR M+THGRAL  L  RA+
Sbjct  411  PSADEKIRVGARALGPMQHLQLERLYGSKEETLIPLHLALAFRGMNTHGRALLTLAHRAM  470

Query  478  D--DEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               DE  Y + EGE++   ++GWNFG+GHLHNE L+ A+Q+RC F  G++RV+IL+ QPI
Sbjct  471  ADYDEDDYNLCEGEVLCAMVLGWNFGDGHLHNECLIEALQQRCGFEPGEVRVVILDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPS  587
            H Q Q YR+VDA TG FE GY  V+DM + QPW    D+ PV+V T R + S
Sbjct  531  HRQTQEYRLVDAATGEFERGYCNVDDMATAQPW---ADDIPVYVQTGRVSDS  579


>gi|296170413|ref|ZP_06852001.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295894884|gb|EFG74605.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=580

 Score =  489 bits (1260),  Expect = 4e-136, Method: Compositional matrix adjust.
 Identities = 271/590 (46%), Positives = 373/590 (64%), Gaps = 18/590 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF++P+LP VD   W    R  R+  + R   E+GFGTP  ++++Y  KIA+YV  G  
Sbjct  1    MGFIQPNLPVVDVAEWSKLNRAERIVPMVRHIAENGFGTPLVMHVMYGVKIALYVLGGWV  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
                  G+G  + +  WW++PIV++K +++T+LFEV+G GC  GPL GR++PP+G  LYW
Sbjct  61   FGWCTTGIGRFTGVAGWWSEPIVFEKAVLYTMLFEVVGLGCCFGPLAGRYFPPMGSVLYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WPD+VP TQG  R+ +D ALYA +L+    AL+S GS   G  P     +
Sbjct  121  LRPGTIRLPPWPDRVPLTQGTVRSPIDAALYAALLVLLAIALVSDGS---GPIPALHT-E  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            +G++ P   V  +  L V+GLRDK IFLAARGE Y     VF F   D I   K++ + +
Sbjct  177  IGVLAPWHTVTILAVLAVMGLRDKVIFLAARGEVYAPLALVFLFTGADSIIGAKVVFMVI  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            W GAATSKLN HFP+V++ M +NN  + S     +K  +++ + +DLRPS L   +AH  
Sbjct  237  WLGAATSKLNRHFPFVISTMLANNPFIPS---GALKRSMFKRYPDDLRPSALAGFIAH-F  292

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
             T  E LVP  L+    G  W   +  F MV+FHLNIL   PMGVPLEWNVF IF +  L
Sbjct  293  STAVEGLVPLALLFSHGG--WPTAIAAFVMVVFHLNILLAFPMGVPLEWNVFMIFGVLSL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  +  +D+ +P  +AI+ AV+A VV +GNL P K+SFLP MRYYAGNW T++WC +
Sbjct  351  FVAHAGLGLSDVANPWPIAILFAVMAGVVAVGNLYPRKVSFLPGMRYYAGNWDTTVWCVK  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVA-AFRAMHTHGRALNGLLPRAL  477
               +    T       +   QL +LY      ++   +A AFR M+THGRAL  L+ RAL
Sbjct  411  PSVDEKFRTGSRALGPMQHLQLERLYGSKEQTLVPLHLAMAFRGMNTHGRALFTLVHRAL  470

Query  478  D--DEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               DE  Y + EGE++   ++GWNFG+GH+HNE L+ A+Q+RC+F  G++RV+IL+ QPI
Sbjct  471  AGYDEDDYNLCEGEVLCSMVLGWNFGDGHMHNECLIEALQQRCDFQPGEVRVVILDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGT  585
            H+Q+Q YR+VDA TG FE GYV V+DM++ QPW    D+ PVHV +  G 
Sbjct  531  HIQRQEYRLVDAATGEFERGYVDVDDMVTSQPW---ADDIPVHVQSGTGA  577


>gi|118472311|ref|YP_889448.1| hypothetical protein MSMEG_5202 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173598|gb|ABK74494.1| conserved membrane protein [Mycobacterium smegmatis str. MC2 
155]
Length=584

 Score =  481 bits (1238),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 268/584 (46%), Positives = 363/584 (63%), Gaps = 19/584 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLK   P VD + W    R  +++ + R W E GFGTP A++L Y+ KI +YV     
Sbjct  1    MGFLKQTAPQVDFEEWSKGTRAEKIRPMARHWAEVGFGTPVALHLFYVVKICLYVLGAWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
            ++    G+ G + + DWWT+PIV++KV+++T+L+EV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   VVLSTRGIDGFTAVADWWTEPIVFEKVVLYTMLYEVVGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            LRP TIRLP WPD+VP T+GDTRTV D  LY  +L+  + A+ S G+      P+ A G 
Sbjct  121  LRPKTIRLPPWPDRVPLTKGDTRTVFDAVLYGALLVVLLIAIFSDGT-----GPLPALGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFP--FTDQIAAFKIIM  237
            ++G++    +   +V L VLGLRDK IFLAARGE Y      F F     D I A K++ 
Sbjct  176  EIGVLPMWQIAAVLVLLAVLGLRDKVIFLAARGEVYASFTVAFLFAGHGVDAILAAKLVC  235

Query  238  LCLWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMA  297
            + +W GAATSKLN HFP+V++ M SNN +LR R    IK   +    +DLRP    + +A
Sbjct  236  MVIWLGAATSKLNKHFPFVISTMMSNNPVLRPRF---IKRKFFEHFPDDLRPGRPSRWLA  292

Query  298  HGGGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLC  357
            H   T  E LVP  L     G P        M+ FH  ILS +PMGVPLEWNVF IF + 
Sbjct  293  H-VSTAIEMLVPLALFFSHGGWP-TALAATVMICFHFGILSAIPMGVPLEWNVFMIFCVA  350

Query  358  YLFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCF  417
             LF  +  +  TDL +PL L ++  +V  V +GNL P KISFLP MRYYAGNW TS+WC 
Sbjct  351  TLFVGHADVGITDLSTPLPLLLLAVLVTTVTLGNLFPRKISFLPGMRYYAGNWDTSLWCV  410

Query  418  RGDAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPRA  476
            +  A   +E ++V  +++   Q+ + Y    TA++      AFR  ++HGRAL  L  RA
Sbjct  411  KPSAAEKIEKNIVAIASMPAAQMERYYGSPETAQMYLYMGYAFRGFNSHGRALFTLAHRA  470

Query  477  L--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQP  534
            +   DE  Y + +GE +    +GWNFG+GH+ NEQLV A+Q+RC+F  G++R+++L+ QP
Sbjct  471  MAGHDEGEYVLTDGERIVSTAIGWNFGDGHMSNEQLVDALQKRCHFEPGEVRIVMLDAQP  530

Query  535  IHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVH  578
            I  Q Q YR+VDA TG FE GYV V DM++RQPW    D+ PVH
Sbjct  531  IQRQTQNYRLVDAATGEFERGYVKVADMVTRQPW---DDDVPVH  571


>gi|254823134|ref|ZP_05228135.1| hypothetical protein MintA_24610 [Mycobacterium intracellulare 
ATCC 13950]
Length=579

 Score =  481 bits (1237),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 268/592 (46%), Positives = 369/592 (63%), Gaps = 18/592 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF++P+LP VD   W  +PR  R+  + R   +HGFGTP  ++++Y  KIA+Y+  G  
Sbjct  1    MGFIRPNLPVVDVADWSARPRAERIVPMARHIAQHGFGTPLVMHVMYGVKIALYILGGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
                  G+GG +++  WW +PIV+QK +++T+LFEV+G GC  GPL GR++PP+G  LYW
Sbjct  61   FAWSTRGIGGFTQVSAWWAEPIVFQKAVLYTMLFEVVGLGCCFGPLAGRYFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAGD  180
            LRP TIRLP WPD+VP T+G  RT VD  LY I+L   V+ALLS G+ GP     TA   
Sbjct  121  LRPGTIRLPPWPDRVPLTKGSNRTPVDALLYGILLALLVFALLSDGT-GPIPALDTA---  176

Query  181  VGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLCL  240
            +G++     V  +  L ++ LRDK IFLAARGE Y      F F   D +   K++ + +
Sbjct  177  IGVLPRWQTVAVLAVLALISLRDKVIFLAARGEVYAPLALTFLFAGADIVVGAKVVFMVI  236

Query  241  WWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHGG  300
            W GAATSKLN HFP+V++ M +NN  + S    P+K  +++ + +DLRPS L   +AH  
Sbjct  237  WLGAATSKLNKHFPFVISTMLANNPFIPS---GPLKRSMFKRYPDDLRPSALAGFIAH-F  292

Query  301  GTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
             T  E LVP +L+    G  W   L  F M++FHLNIL   PMGVPLEWNVF IF + +L
Sbjct  293  STAVEGLVPLVLLFSHGG--WPTALAAFVMIVFHLNILLAFPMGVPLEWNVFMIFGVLWL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  +  +++ +P  + I+ AV+A  V  GNL P K+SFLP MRYYAGNW T++WC R
Sbjct  351  FVTHAPLGLSNIGNPWPIGILFAVMAGTVAAGNLYPRKVSFLPGMRYYAGNWDTTLWCVR  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVA-AFRAMHTHGRALNGLLPRAL  477
              A+            +   QL +LY      ++   +A AFR M+THGRAL  L  RA+
Sbjct  411  PSADEKFRVGSRALGPMQHLQLERLYGSKEETLVPLHLALAFRGMNTHGRALLTLAHRAM  470

Query  478  D--DEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               DE  Y + EGE++   ++GWNFG+GH+HNE L+ A+Q+RC F  G++RV+IL+ QPI
Sbjct  471  ADYDEDDYNLCEGEVLCSMVLGWNFGDGHMHNECLIEALQQRCGFEPGEVRVVILDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPS  587
            H Q+Q YR+VDA TG FE GY  V DM+  QPW    D  PV+V + R + S
Sbjct  531  HRQRQEYRLVDAATGEFERGYCEVADMVVNQPW---ADNIPVYVQSDRVSGS  579


>gi|333989724|ref|YP_004522338.1| hypothetical protein JDM601_1084 [Mycobacterium sp. JDM601]
 gi|333485692|gb|AEF35084.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=577

 Score =  478 bits (1230),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 272/589 (47%), Positives = 371/589 (63%), Gaps = 20/589 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP+LP VD   W    R  +++ + R W E GFGTP  ++L Y+ KI +Y+  GA 
Sbjct  1    MGFLKPELPVVDFAEWSKGTRSEKIRPMARHWAEVGFGTPVVLHLFYVLKIGLYIL-GAW  59

Query  61   IISLN-PGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLY  119
            + +L+  G+ G + +  WW++PIV++KV+++TLLFEV+G GCG GPL  RF+PP+G  LY
Sbjct  60   LFALSTAGIDGFTEVRQWWSEPIVFEKVVLYTLLFEVIGLGCGFGPLNNRFFPPMGSILY  119

Query  120  WLRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG  179
            WLRP TIRLP WP ++P T G  RT +D ALYA +L+  + ALLS G+ GP     T   
Sbjct  120  WLRPGTIRLPPWPRRIPLTTGTGRTPLDAALYAALLVMLLVALLSDGT-GPIAALHT---  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
            +VG++    ++  +  L + GLRDK IFLAARGE Y      F F   D I A K I + 
Sbjct  176  EVGVLPHWQILTVLGILALAGLRDKVIFLAARGEVYAPLAAAFLFTGVDMIIAAKAIFMV  235

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M SNN L+R +    +K   ++D   DLRP    K +AH 
Sbjct  236  IWLGAATSKLNRHFPFVISTMMSNNPLIRPKA---LKRAFFKDFPEDLRPGGPSKALAH-  291

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCY  358
              T  E LVP +L     G  W   +  F MV FHL IL+ +PMGVPLEWNVF IF +  
Sbjct  292  VSTAIEMLVPLVLFFSHGG--WPTAVAAFVMVCFHLGILAAIPMGVPLEWNVFMIFGVLS  349

Query  359  LFGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCF  417
            LF  +  +   D+ +   +A++ A+ A  V++GNL P K+SFLP MRYYAGNW T++WC 
Sbjct  350  LFVAHADLGLRDVNNAWAVALLFAISAGTVVLGNLFPRKVSFLPGMRYYAGNWDTTLWCL  409

Query  418  RGDAEATMETSVVKSSALVVNQLAKLYDGA-TAEIMTDKVAAFRAMHTHGRALNGLLPRA  476
            +  AE  +   +V  +++   QL + Y  A  A+I      AFR  +THGRAL  L  RA
Sbjct  410  KPSAEEKIARGIVAIASMPAAQLERFYGSAEAAQIPIYMGYAFRGFNTHGRALFTLAHRA  469

Query  477  L--DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQP  534
            +   DE+ Y + +GE +    VGWNFG+GH+ NEQL+ A+Q+RC F  G++RV+IL+ QP
Sbjct  470  MAGRDESDYTLTDGERICSTAVGWNFGDGHMTNEQLIEALQQRCGFEPGEVRVVILDAQP  529

Query  535  IHVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQR  583
            IH Q Q YR+VDA TG+FE G+V V DM++RQPW    D+ PV+V   R
Sbjct  530  IHRQTQAYRLVDAATGVFERGHVKVADMVARQPW---DDDLPVYVDENR  575


>gi|183983926|ref|YP_001852217.1| hypothetical protein MMAR_3954 [Mycobacterium marinum M]
 gi|183177252|gb|ACC42362.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=579

 Score =  473 bits (1218),  Expect = 3e-131, Method: Compositional matrix adjust.
 Identities = 267/586 (46%), Positives = 364/586 (63%), Gaps = 19/586 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGF++P+LP VD   W    R  R+  + R   E+GFGTP  + ++Y  KI +YV  GA 
Sbjct  1    MGFIQPNLPVVDMAEWSKGTRAQRIVPMARHIAENGFGTPLVMPVMYGIKIVLYVL-GAW  59

Query  61   IISLN-PGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLY  119
            + +L+  G+ G S +G WWT+PIV++K +++T+LFEV+G GC  GP+ GR++PP+G  LY
Sbjct  60   LFALSTSGIEGFSNVGAWWTEPIVFEKAVLYTMLFEVVGLGCCFGPMAGRYFPPMGSILY  119

Query  120  WLRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG  179
            WLRP TIRLP WP++VP T+G  RT+ +V LY  +L   V AL+S G+ GP     T  G
Sbjct  120  WLRPGTIRLPPWPNRVPLTKGTNRTLFEVLLYGALLALLVVALVSDGT-GPIPELNTMIG  178

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
             +    PV ++     L VLGLRDK  FLAARGE Y     VF F  +D +   K++ + 
Sbjct  179  VLPRWQPVAILSV---LAVLGLRDKITFLAARGEVYAPLTLVFLFSGSDIVVGAKLVFMV  235

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M +NN  + S     +K  L++ + +DLRPS L   +AH 
Sbjct  236  IWLGAATSKLNKHFPFVISTMLANNPFIPSGF---LKRSLFKRYPDDLRPSALSDFIAH-  291

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGF-MVLFHLNILSNLPMGVPLEWNVFFIFSLCY  358
              T  E LVP  L     G  W   +  F MV+FHLNIL   PMGVPLEWNVF IF + +
Sbjct  292  FSTAVEGLVPLALFFCHGG--WPTTIAAFVMVMFHLNILLAFPMGVPLEWNVFMIFGVLW  349

Query  359  LFGHYGAITATDLRSPLLLAIVIAVVAVVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            LF  +  +   DL  P  + +   + AVV++GNL P  +SFLP MRYYAGNW T+ WC +
Sbjct  350  LFVAHAHLGLADLTGPWPVVLCALIAAVVVIGNLYPRMVSFLPGMRYYAGNWDTTQWCVK  409

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDGATAEIMTDKVA-AFRAMHTHGRALNGLLPRAL  477
              A+  +         +   QL +LY+     ++   +A AFR M+THGRAL  L+ RAL
Sbjct  410  PSADEKIRVGARALGPMYHLQLERLYNSKEQALVPIHLAFAFRGMNTHGRALYTLVHRAL  469

Query  478  D--DEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               DE  Y + EGE +   ++GWNFG+GHLHNE L+ A+Q+RC F  G++RV+IL+ QPI
Sbjct  470  AGYDEDDYNVCEGEQLCAMVLGWNFGDGHLHNECLIEALQQRCGFEPGEVRVVILDSQPI  529

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTT  581
            H+Q+Q YR+VDA TG FE GYV V DM   QPW    D+ P+HV +
Sbjct  530  HIQRQQYRLVDAATGEFERGYVDVADMAEAQPWV---DDLPIHVES  572


>gi|336458750|gb|EGO37710.1| Transmembrane protein of unknown function (DUF3556) [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=593

 Score =  472 bits (1215),  Expect = 7e-131, Method: Compositional matrix adjust.
 Identities = 274/594 (47%), Positives = 368/594 (62%), Gaps = 18/594 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP+LP +D   W    R  +++ + + W E GFGTP A++L Y+ KI +Y+  G  
Sbjct  12   MGFLKPELPQLDMAEWSKGTRSDKIRPMAKHWAEVGFGTPVALHLFYVVKILLYILGGWL  71

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
              S   GLGG + +  WW++PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  72   FASATRGLGGFTHVASWWSEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  131

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VPFT G  R  VDVALYA+ L+  + AL + G+      PV   G 
Sbjct  132  MRFGTIRLPPWPDRVPFTAGTKRKPVDVALYALFLLLTLAALFADGT-----GPVPELGT  186

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
             +GL+    +V  ++ L VLGLRDK IFLAARGE Y      F F   D I   K++ L 
Sbjct  187  TIGLLPAWKIVLILLVLAVLGLRDKVIFLAARGEVYASMAVTFLFGAPDMIVGSKVVFLV  246

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M SNN L+R R    +K   +    +DLRP  L + +AH 
Sbjct  247  IWMGAATSKLNKHFPFVISTMMSNNPLVRPRW---LKRRFFEKFPDDLRPGRLSRWIAH-  302

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
              T  E LVP  L     G P     +  MV FHL IL ++PMGVPLEWNVF IF +  L
Sbjct  303  LSTAIEMLVPLPLFFCHGGWPVTVAAV-VMVCFHLGILVSIPMGVPLEWNVFMIFGVLSL  361

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  I   DLR P+++A++  V+A +V++GN+ P KISFLP MRYYAGNW T++WC +
Sbjct  362  FVAHTGIGLGDLRHPVVVAVLFVVIAGIVVLGNMFPRKISFLPGMRYYAGNWDTTLWCIK  421

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPRAL  477
              A   +   +V  +++   QL + Y     A+I      AFR  +THGRAL  L  RA+
Sbjct  422  PSASEKISRGIVAIASMPQAQLERFYGSPEAAQIPLYMGYAFRGFNTHGRALFTLAHRAM  481

Query  478  --DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               +E  Y I +GE +    +GWNFG+GH+HNEQL+AA+Q RC+F  G++RV++L+ QPI
Sbjct  482  AGQNEDDYVITDGERICSTAIGWNFGDGHMHNEQLIAALQERCHFEPGEVRVVLLDAQPI  541

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            H Q Q YR+VDA TG FE G V V DM+ RQPW    D+ PV V +       P
Sbjct  542  HKQTQAYRLVDAATGEFERGIVRVADMVVRQPW---DDDVPVQVVSDDAPSVTP  592


>gi|41408760|ref|NP_961596.1| hypothetical protein MAP2662c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41397118|gb|AAS04979.1| hypothetical protein MAP_2662c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=582

 Score =  472 bits (1214),  Expect = 1e-130, Method: Compositional matrix adjust.
 Identities = 274/594 (47%), Positives = 368/594 (62%), Gaps = 18/594 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP+LP +D   W    R  +++ + + W E GFGTP A++L Y+ KI +Y+  G  
Sbjct  1    MGFLKPELPQLDMAEWSKGTRSDKIRPMAKHWAEVGFGTPVALHLFYVVKILLYILGGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
              S   GLGG + +  WW++PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   FASATRGLGGFTHVASWWSEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VPFT G  R  VDVALYA+ L+  + AL + G+      PV   G 
Sbjct  121  MRFGTIRLPPWPDRVPFTAGTKRKPVDVALYALFLLLTLAALFADGT-----GPVPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
             +GL+    +V  ++ L VLGLRDK IFLAARGE Y      F F   D I   K++ L 
Sbjct  176  TIGLLPAWKIVLILLVLAVLGLRDKVIFLAARGEVYASMAVTFLFGAPDMIVGSKVVFLV  235

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M SNN L+R R    +K   +    +DLRP  L + +AH 
Sbjct  236  IWMGAATSKLNKHFPFVISTMMSNNPLVRPRW---LKRRFFEKFPDDLRPGRLSRWIAH-  291

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
              T  E LVP  L     G P     +  MV FHL IL ++PMGVPLEWNVF IF +  L
Sbjct  292  LSTAIEMLVPLPLFFCHGGWPVTVAAV-VMVCFHLGILVSIPMGVPLEWNVFMIFGVLSL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  I   DLR P+++A++  V+A +V++GN+ P KISFLP MRYYAGNW T++WC +
Sbjct  351  FVAHTGIGLGDLRHPVVVAVLFVVIAGIVVLGNMFPRKISFLPGMRYYAGNWDTTLWCIK  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPRAL  477
              A   +   +V  +++   QL + Y     A+I      AFR  +THGRAL  L  RA+
Sbjct  411  PSASEKISRGIVAIASMPQAQLERFYGSPEAAQIPLYMGYAFRGFNTHGRALFTLAHRAM  470

Query  478  --DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               +E  Y I +GE +    +GWNFG+GH+HNEQL+AA+Q RC+F  G++RV++L+ QPI
Sbjct  471  AGQNEDDYVITDGERICSTAIGWNFGDGHMHNEQLIAALQERCHFEPGEVRVVLLDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            H Q Q YR+VDA TG FE G V V DM+ RQPW    D+ PV V +       P
Sbjct  531  HKQTQAYRLVDAATGEFERGIVRVADMVVRQPW---DDDVPVQVVSDDAPSVTP  581


>gi|118464709|ref|YP_880506.1| hypothetical protein MAV_1261 [Mycobacterium avium 104]
 gi|118165996|gb|ABK66893.1| conserved membrane protein [Mycobacterium avium 104]
Length=582

 Score =  471 bits (1213),  Expect = 1e-130, Method: Compositional matrix adjust.
 Identities = 274/594 (47%), Positives = 368/594 (62%), Gaps = 18/594 (3%)

Query  1    MGFLKPDLPDVDHDTWLTQPRRTRLQVVTRDWVEHGFGTPYAVYLLYLTKIAVYVAAGAA  60
            MGFLKP+LP +D   W    R  +++ + + W E GFGTP A++L Y+ KI +Y+  G  
Sbjct  1    MGFLKPELPQLDMAEWNKGTRSDKIRPMAKHWAEVGFGTPVALHLFYVVKILLYILGGWL  60

Query  61   IISLNPGLGGLSRIGDWWTQPIVYQKVIVFTLLFEVLGFGCGSGPLTGRFWPPIGGFLYW  120
              S   GLGG + +  WW++PIV++KV+++T+LFEV+G GCG GPL  RF+PP+G  LYW
Sbjct  61   FASATRGLGGFTHVASWWSEPIVFEKVVLYTMLFEVIGLGCGFGPLNNRFFPPMGSILYW  120

Query  121  LRPNTIRLPAWPDKVPFTQGDTRTVVDVALYAIVLIGGVWALLSPGSPGPGGTPVTAAG-  179
            +R  TIRLP WPD+VPFT G  R  VDVALYA+ L+  + AL + G+      PV   G 
Sbjct  121  MRFGTIRLPPWPDRVPFTAGTKRKPVDVALYALFLLLTLAALFADGT-----GPVPELGT  175

Query  180  DVGLINPVLVVPTIVALGVLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKIIMLC  239
             +GL+    +V  ++ L VLGLRDK IFLAARGE Y      F F   D I   K++ L 
Sbjct  176  TIGLLPAWKIVLILLVLAVLGLRDKVIFLAARGEVYASMAVTFLFGAPDMIVGSKVVFLV  235

Query  240  LWWGAATSKLNHHFPYVVAVMTSNNALLRSRVFNPIKHLLYRDHANDLRPSWLPKLMAHG  299
            +W GAATSKLN HFP+V++ M SNN L+R R    +K   +    +DLRP  L + +AH 
Sbjct  236  IWMGAATSKLNKHFPFVISTMMSNNPLVRPRW---LKRRFFEKFPDDLRPGRLSRWIAH-  291

Query  300  GGTTAEFLVPGILVLVADGHPWRWFLIGFMVLFHLNILSNLPMGVPLEWNVFFIFSLCYL  359
              T  E LVP  L     G P     +  MV FHL IL ++PMGVPLEWNVF IF +  L
Sbjct  292  LSTAIEMLVPLPLFFCHGGWPVTVAAV-VMVCFHLGILVSIPMGVPLEWNVFMIFGVLSL  350

Query  360  FGHYGAITATDLRSPLLLAIVIAVVA-VVIMGNLLPEKISFLPAMRYYAGNWATSIWCFR  418
            F  +  I   DLR P+++A++  V+A +V++GN+ P KISFLP MRYYAGNW T++WC +
Sbjct  351  FVAHTGIGLGDLRHPVVVAVLFVVIAGIVVLGNMFPRKISFLPGMRYYAGNWDTTLWCIK  410

Query  419  GDAEATMETSVVKSSALVVNQLAKLYDG-ATAEIMTDKVAAFRAMHTHGRALNGLLPRAL  477
              A   +   +V  +++   QL + Y     A+I      AFR  +THGRAL  L  RA+
Sbjct  411  PSASEKISRGIVAIASMPQAQLERFYGSPEAAQIPLYMGYAFRGFNTHGRALFTLAHRAM  470

Query  478  --DDEAHYRIREGEIVAGPLVGWNFGEGHLHNEQLVAAVQRRCNFADGDLRVIILEGQPI  535
               +E  Y I +GE +    +GWNFG+GH+HNEQL+AA+Q RC+F  G++RV++L+ QPI
Sbjct  471  AGQNEDDYVITDGERICSTAIGWNFGDGHMHNEQLIAALQERCHFEPGEVRVVLLDAQPI  530

Query  536  HVQKQWYRIVDAKTGLFEAGYVTVEDMLSRQPWPEPGDEFPVHVTTQRGTPSKP  589
            H Q Q YR+VDA TG FE G V V DM+ RQPW    D+ PV V +       P
Sbjct  531  HKQTQAYRLVDAATGEFERGIVRVADMVVRQPW---DDDVPVQVVSDDAPSVTP  581



Lambda     K      H
   0.326    0.143    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 1337140755432


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40