BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1434

Length=45
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608572|ref|NP_215950.1|  hypothetical protein Rv1434 [Mycoba...  88.6    3e-16
gi|15840891|ref|NP_335928.1|  hypothetical protein MT1478 [Mycoba...  84.0    7e-15


>gi|15608572|ref|NP_215950.1| hypothetical protein Rv1434 [Mycobacterium tuberculosis H37Rv]
 gi|31792628|ref|NP_855121.1| hypothetical protein Mb1469 [Mycobacterium bovis AF2122/97]
 gi|121637364|ref|YP_977587.1| hypothetical protein BCG_1495 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 15 more sequence titles
 
gi|148661225|ref|YP_001282748.1| hypothetical protein MRA_1442A [Mycobacterium tuberculosis H37Ra]
 gi|224989839|ref|YP_002644526.1| hypothetical protein JTY_1470 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289442879|ref|ZP_06432623.1| hypothetical protein TBLG_03622 [Mycobacterium tuberculosis T46]
 gi|339631501|ref|YP_004723143.1| hypothetical protein MAF_14560 [Mycobacterium africanum GM041182]
 gi|340626448|ref|YP_004744900.1| hypothetical protein MCAN_14501 [Mycobacterium canettii CIPT 
140010059]
 gi|2131062|emb|CAB09250.1| HYPOTHETICAL PROTEIN Rv1434 [Mycobacterium tuberculosis H37Rv]
 gi|31618217|emb|CAD94330.1| HYPOTHETICAL PROTEIN Mb1469 [Mycobacterium bovis AF2122/97]
 gi|121493011|emb|CAL71482.1| Hypothetical protein BCG_1495 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148505377|gb|ABQ73186.1| hypothetical protein MRA_1442A [Mycobacterium tuberculosis H37Ra]
 gi|224772952|dbj|BAH25758.1| hypothetical protein JTY_1470 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289415798|gb|EFD13038.1| hypothetical protein TBLG_03622 [Mycobacterium tuberculosis T46]
 gi|339330857|emb|CCC26528.1| hypothetical protein MAF_14560 [Mycobacterium africanum GM041182]
 gi|340004638|emb|CCC43782.1| hypothetical protein MCAN_14501 [Mycobacterium canettii CIPT 
140010059]
 gi|341601383|emb|CCC64056.1| hypothetical protein BCGM_1463 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344219264|gb|AEM99894.1| hypothetical protein MTCTRI2_1471 [Mycobacterium tuberculosis 
CTRI-2]
Length=45

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%), Gaps = 0/45 (0%)

Query  1   MRASPAERVDGAYAGAGPHTQSVLEEDQRQRAPAGAEAEGPGRTG  45
           MRASPAERVDGAYAGAGPHTQSVLEEDQRQRAPAGAEAEGPGRTG
Sbjct  1   MRASPAERVDGAYAGAGPHTQSVLEEDQRQRAPAGAEAEGPGRTG  45


>gi|15840891|ref|NP_335928.1| hypothetical protein MT1478 [Mycobacterium tuberculosis CDC1551]
 gi|13881093|gb|AAK45742.1| hypothetical protein MT1478 [Mycobacterium tuberculosis CDC1551]
Length=47

 Score = 84.0 bits (206),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 45/47 (96%), Positives = 45/47 (96%), Gaps = 2/47 (4%)

Query  1   MRASPAERVD--GAYAGAGPHTQSVLEEDQRQRAPAGAEAEGPGRTG  45
           MRASPAERVD  GAYAGAGPHTQSVLEEDQRQRAPAGAEAEGPGRTG
Sbjct  1   MRASPAERVDVDGAYAGAGPHTQSVLEEDQRQRAPAGAEAEGPGRTG  47



Lambda     K      H
   0.306    0.126    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128192280996


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40