BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1435c Length=202 Score E Sequences producing significant alignments: (Bits) Value gi|15608573|ref|NP_215951.1| proline, glycine, valine-rich secre... 342 2e-92 gi|167968472|ref|ZP_02550749.1| putative conserved proline,glyci... 337 7e-91 gi|31792629|ref|NP_855122.1| proline, glycine, valine-rich secre... 251 5e-65 gi|15840892|ref|NP_335929.1| hypothetical protein MT1479 [Mycoba... 244 6e-63 gi|340626449|ref|YP_004744901.1| hypothetical protein MCAN_14511... 241 4e-62 gi|254231673|ref|ZP_04925000.1| hypothetical protein TBCG_01411 ... 241 4e-62 gi|253799516|ref|YP_003032517.1| hypothetical protein TBMG_02547... 235 2e-60 gi|2736091|gb|AAC26394.1| pGB14TC-V [Mycobacterium tuberculosis ... 127 1e-27 gi|183982251|ref|YP_001850542.1| hypothetical protein MMAR_2238 ... 120 1e-25 gi|41409909|ref|NP_962745.1| hypothetical protein MAP3811 [Mycob... 97.1 1e-18 gi|254777272|ref|ZP_05218788.1| hypothetical protein MaviaA2_217... 97.1 2e-18 gi|336460226|gb|EGO39129.1| hypothetical protein MAPs_42540 [Myc... 92.4 3e-17 gi|118464932|ref|YP_883959.1| hypothetical protein MAV_4835 [Myc... 92.4 4e-17 gi|118617439|ref|YP_905771.1| hypothetical protein MUL_1827 [Myc... 84.7 7e-15 gi|342859187|ref|ZP_08715841.1| hypothetical protein MCOL_09923 ... 79.3 3e-13 gi|296167707|ref|ZP_06849947.1| conserved hypothetical protein [... 69.3 3e-10 gi|296167731|ref|ZP_06849948.1| hypothetical protein HMPREF0591_... 50.8 1e-04 gi|118471215|ref|YP_885082.1| hypothetical protein MSMEG_0673 [M... 37.7 0.93 >gi|15608573|ref|NP_215951.1| proline, glycine, valine-rich secreted protein [Mycobacterium tuberculosis H37Rv] gi|148661226|ref|YP_001282749.1| hypothetical protein MRA_1443 [Mycobacterium tuberculosis H37Ra] gi|2131061|emb|CAB09249.1| Probable conserved Proline, Glycine, Valine-rich secreted protein [Mycobacterium tuberculosis H37Rv] gi|148505378|gb|ABQ73187.1| putative conserved proline,glycine and valine rich secreted protein [Mycobacterium tuberculosis H37Ra] Length=202 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 201/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%) Query 1 LTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 60 +TLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA Sbjct 1 MTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 60 Query 61 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGGP 120 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGGP Sbjct 61 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGGP 120 Query 121 VPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDALTDPAPA 180 VPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDALTDPAPA Sbjct 121 VPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDALTDPAPA 180 Query 181 GGPVPGQPVLPGPSASAPAGAR 202 GGPVPGQPVLPGPSASAPAGAR Sbjct 181 GGPVPGQPVLPGPSASAPAGAR 202 >gi|167968472|ref|ZP_02550749.1| putative conserved proline,glycine and valine rich secreted protein [Mycobacterium tuberculosis H37Ra] gi|307084003|ref|ZP_07493116.1| hypothetical protein TMLG_03122 [Mycobacterium tuberculosis SUMu012] gi|308366368|gb|EFP55219.1| hypothetical protein TMLG_03122 [Mycobacterium tuberculosis SUMu012] Length=199 Score = 337 bits (863), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 199/199 (100%), Positives = 199/199 (100%), Gaps = 0/199 (0%) Query 4 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG 63 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG Sbjct 1 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG 60 Query 64 PAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGGPVPI 123 PAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGGPVPI Sbjct 61 PAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGGPVPI 120 Query 124 PGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDALTDPAPAGGP 183 PGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDALTDPAPAGGP Sbjct 121 PGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDALTDPAPAGGP 180 Query 184 VPGQPVLPGPSASAPAGAR 202 VPGQPVLPGPSASAPAGAR Sbjct 181 VPGQPVLPGPSASAPAGAR 199 >gi|31792629|ref|NP_855122.1| proline, glycine, valine-rich secreted protein [Mycobacterium bovis AF2122/97] gi|121637365|ref|YP_977588.1| hypothetical protein BCG_1496c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989840|ref|YP_002644527.1| putative proline, glycine, valine-rich secreted protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31618218|emb|CAD94331.1| Probable conserved Proline, Glycine, Valine-rich secreted protein [Mycobacterium bovis AF2122/97] gi|121493012|emb|CAL71483.1| Probable conserved Proline, Glycine, Valine-rich secreted protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772953|dbj|BAH25759.1| putative proline, glycine, valine-rich secreted protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341601384|emb|CCC64057.1| probable conserved Proline, Glycine, Valine-rich secreted protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=209 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 199/209 (96%), Positives = 200/209 (96%), Gaps = 7/209 (3%) Query 1 LTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 60 +TLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA Sbjct 1 MTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 60 Query 61 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGG- 119 AGGPAA GACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPG Sbjct 61 AGGPAATGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGAP 120 Query 120 ------PVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA 173 PVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA Sbjct 121 VPIPGGPVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA 180 Query 174 LTDPAPAGGPVPGQPVLPGPSASAPAGAR 202 LTDPAPAGGPVPGQPVLPGPSASAPAGAR Sbjct 181 LTDPAPAGGPVPGQPVLPGPSASAPAGAR 209 >gi|15840892|ref|NP_335929.1| hypothetical protein MT1479 [Mycobacterium tuberculosis CDC1551] gi|148822654|ref|YP_001287408.1| proline, glycine, valine-rich secreted protein [Mycobacterium tuberculosis F11] gi|254364314|ref|ZP_04980360.1| conserved proline, glycine, valine-rich secreted protein [Mycobacterium tuberculosis str. Haarlem] 15 more sequence titles Length=220 Score = 244 bits (622), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 201/209 (97%), Positives = 201/209 (97%), Gaps = 7/209 (3%) Query 1 LTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 60 LTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA Sbjct 12 LTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 71 Query 61 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGG- 119 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPG Sbjct 72 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGAP 131 Query 120 ------PVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA 173 PVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA Sbjct 132 VPIPGGPVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA 191 Query 174 LTDPAPAGGPVPGQPVLPGPSASAPAGAR 202 LTDPAPAGGPVPGQPVLPGPSASAPAGAR Sbjct 192 LTDPAPAGGPVPGQPVLPGPSASAPAGAR 220 >gi|340626449|ref|YP_004744901.1| hypothetical protein MCAN_14511 [Mycobacterium canettii CIPT 140010059] gi|340004639|emb|CCC43783.1| putative conserved proline, glycine, valine-rich secreted protein [Mycobacterium canettii CIPT 140010059] Length=209 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 199/209 (96%), Positives = 200/209 (96%), Gaps = 7/209 (3%) Query 1 LTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 60 +TLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA Sbjct 1 MTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 60 Query 61 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGG- 119 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPG Sbjct 61 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGAP 120 Query 120 ------PVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA 173 PVPIPG PVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA Sbjct 121 VPIPGGPVPIPGGPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA 180 Query 174 LTDPAPAGGPVPGQPVLPGPSASAPAGAR 202 LTDPAPAGGPVPGQPVLPGPSASAPAGAR Sbjct 181 LTDPAPAGGPVPGQPVLPGPSASAPAGAR 209 >gi|254231673|ref|ZP_04925000.1| hypothetical protein TBCG_01411 [Mycobacterium tuberculosis C] gi|308231838|ref|ZP_07413955.2| hypothetical protein TMAG_03438 [Mycobacterium tuberculosis SUMu001] gi|339631502|ref|YP_004723144.1| hypothetical protein MAF_14570 [Mycobacterium africanum GM041182] gi|124600732|gb|EAY59742.1| hypothetical protein TBCG_01411 [Mycobacterium tuberculosis C] gi|308215925|gb|EFO75324.1| hypothetical protein TMAG_03438 [Mycobacterium tuberculosis SUMu001] gi|326903055|gb|EGE49988.1| conserved glycine, proline and valine-rich secreted protein [Mycobacterium tuberculosis W-148] gi|339330858|emb|CCC26529.1| putative conserved proline, Glycine, Valine-rich secreted protein [Mycobacterium africanum GM041182] gi|344219265|gb|AEM99895.1| proline, glycine, valine-rich secreted protein [Mycobacterium tuberculosis CTRI-2] Length=209 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 200/209 (96%), Positives = 201/209 (97%), Gaps = 7/209 (3%) Query 1 LTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 60 +TLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA Sbjct 1 MTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVA 60 Query 61 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGG- 119 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPG Sbjct 61 AGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGAP 120 Query 120 ------PVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA 173 PVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA Sbjct 121 VPIPGGPVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDA 180 Query 174 LTDPAPAGGPVPGQPVLPGPSASAPAGAR 202 LTDPAPAGGPVPGQPVLPGPSASAPAGAR Sbjct 181 LTDPAPAGGPVPGQPVLPGPSASAPAGAR 209 >gi|253799516|ref|YP_003032517.1| hypothetical protein TBMG_02547 [Mycobacterium tuberculosis KZN 1435] gi|254550448|ref|ZP_05140895.1| proline, glycine, valine-rich secreted protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554776|ref|ZP_06443986.1| predicted protein [Mycobacterium tuberculosis KZN 605] 37 more sequence titles Length=206 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 198/206 (97%), Positives = 198/206 (97%), Gaps = 7/206 (3%) Query 4 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG 63 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG Sbjct 1 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG 60 Query 64 PAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGG---- 119 PAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPG Sbjct 61 PAAAGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGAPVPIPGAPVPI 120 Query 120 ---PVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDALTD 176 PVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDALTD Sbjct 121 PGGPVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGVKDALTD 180 Query 177 PAPAGGPVPGQPVLPGPSASAPAGAR 202 PAPAGGPVPGQPVLPGPSASAPAGAR Sbjct 181 PAPAGGPVPGQPVLPGPSASAPAGAR 206 >gi|2736091|gb|AAC26394.1| pGB14TC-V [Mycobacterium tuberculosis H37Rv] Length=87 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%) Query 4 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG 63 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG Sbjct 1 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG 60 Query 64 PAAAGACSAALTDMAGVPFVAPG 86 PAAAGACSAALTDMAGVPFVAPG Sbjct 61 PAAAGACSAALTDMAGVPFVAPG 83 >gi|183982251|ref|YP_001850542.1| hypothetical protein MMAR_2238 [Mycobacterium marinum M] gi|183175577|gb|ACC40687.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=269 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 127/248 (52%), Positives = 140/248 (57%), Gaps = 59/248 (23%) Query 3 LMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAG 62 LM I +RFN KV+A AGL AAIALSP AAA PL T GYACIQGMAG+ A AA Sbjct 20 LMTIFDRFNFKVVACAGLCGAAIALSPQAAAVPLKTDGYACIQGMAGEGGAPAAGGPAAA 79 Query 63 GPAAAGACSAA----------LTDMAGVPFVAPGPVP----------------------- 89 G AA AA + DMAGVP PGP+P Sbjct 80 GGPAAAGGPAAAGATCAASAPINDMAGVPMAVPGPIPVLPAGAPLIDLGGAAAAAPVPIP 139 Query 90 ----------AAAPVPIGAPVPIP-GAPVPIP-GAPVPIP-GGPVPIP-GAPVPVPA-VP 134 A P+P GAP+PIP GAP+PIP GAP+PIP G P+PIP GAP+P+PA P Sbjct 140 AAAPVPIPAGAPVPIPAGAPIPIPAGAPIPIPAGAPIPIPAGAPIPIPAGAPIPIPAGAP 199 Query 135 APV-------IPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGV-KDALTDPAPAGGPVPG 186 P+ IP G PLIALGPV AG P G APII MSG KD PAPAGGPV G Sbjct 200 IPIAAGAPVPIPAGVPLIALGPVPAGVPAAG---APIIDMSGTGKDGPIGPAPAGGPVAG 256 Query 187 QPVLPGPS 194 QPV PGPS Sbjct 257 QPVQPGPS 264 >gi|41409909|ref|NP_962745.1| hypothetical protein MAP3811 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398742|gb|AAS06361.1| hypothetical protein MAP_3811 [Mycobacterium avium subsp. paratuberculosis K-10] Length=183 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/112 (56%), Positives = 75/112 (67%), Gaps = 10/112 (8%) Query 1 LTLMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGD--------AP 52 +TLMAIV+RFN+KV+A AGL AAIALSPDAAA PL+TGG+ACIQG +G+ Sbjct 1 MTLMAIVDRFNMKVVASAGLCGAAIALSPDAAAAPLITGGHACIQGQSGEVAPAAGGPVA 60 Query 53 VAAGDPVAAGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPI--GAPVPI 102 A A A C+A LTDM+GVP PGPVP APVP+ GAP+P+ Sbjct 61 GGAPAAGGAVAAGATDMCAAPLTDMSGVPMAVPGPVPLGAPVPVPLGAPLPL 112 >gi|254777272|ref|ZP_05218788.1| hypothetical protein MaviaA2_21746 [Mycobacterium avium subsp. avium ATCC 25291] Length=146 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/107 (64%), Positives = 80/107 (75%), Gaps = 8/107 (7%) Query 4 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG 63 MAIV+RFN+KV+A AGL AAIALSPDAAA PL+TGG+ACIQG +G+A AAG PVA G Sbjct 1 MAIVDRFNMKVVASAGLCGAAIALSPDAAAAPLITGGHACIQGQSGEAAPAAGGPVAGGA 60 Query 64 PAA--------AGACSAALTDMAGVPFVAPGPVPAAAPVPIGAPVPI 102 PAA C+A LTDM+GVP PGPVP APVP+GAP+P+ Sbjct 61 PAAGGAVAAGATDMCAAPLTDMSGVPMAVPGPVPLGAPVPLGAPLPL 107 >gi|336460226|gb|EGO39129.1| hypothetical protein MAPs_42540 [Mycobacterium avium subsp. paratuberculosis S397] Length=180 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/109 (56%), Positives = 72/109 (67%), Gaps = 10/109 (9%) Query 4 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGD--------APVAA 55 MAIV+RFN+KV+A AGL AAIALSPDAAA PL+TGG+ACIQG +G+ A Sbjct 1 MAIVDRFNMKVVASAGLCGAAIALSPDAAAAPLITGGHACIQGQSGEVAPAAGGPVAGGA 60 Query 56 GDPVAAGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPI--GAPVPI 102 A A C+A LTDM+GVP PGPVP APVP+ GAP+P+ Sbjct 61 PAAGGAVAAGATDMCAAPLTDMSGVPMAVPGPVPLGAPVPVPLGAPLPL 109 >gi|118464932|ref|YP_883959.1| hypothetical protein MAV_4835 [Mycobacterium avium 104] gi|118166219|gb|ABK67116.1| conserved hypothetical protein [Mycobacterium avium 104] Length=180 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/109 (56%), Positives = 72/109 (67%), Gaps = 10/109 (9%) Query 4 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGD--------APVAA 55 MAIV+RFN+KV+A AGL AAIALSPDAAA PL+TGG+ACIQG +G+ A Sbjct 1 MAIVDRFNMKVVASAGLCGAAIALSPDAAAAPLITGGHACIQGQSGEVAPAAGGPVAGGA 60 Query 56 GDPVAAGGPAAAGACSAALTDMAGVPFVAPGPVPAAAPVPI--GAPVPI 102 A A C+A LTDM+GVP PGPVP APVP+ GAP+P+ Sbjct 61 PAAGGAVAAGATDMCAAPLTDMSGVPMAVPGPVPLGAPVPVPLGAPLPL 109 >gi|118617439|ref|YP_905771.1| hypothetical protein MUL_1827 [Mycobacterium ulcerans Agy99] gi|118569549|gb|ABL04300.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=205 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 103/203 (51%), Positives = 111/203 (55%), Gaps = 33/203 (16%) Query 3 LMAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAG 62 LM I +RFN KV+A AGL AAIALSP AAA PL T GYACIQGMAG+ A AA Sbjct 20 LMTIFDRFNFKVVACAGLCGAAIALSPQAAAVPLKTDGYACIQGMAGEGGAPAAGGPAAA 79 Query 63 GPAAAGACSAA----------LTDMAGVPFVAPGPVPAAAPVPIGAPVPIPGAPVPIPGA 112 G AA AA + DMAGVP PGP+P +P GAP+ G Sbjct 80 GGPAAAGGPAAAGATCAASAPINDMAGVPMAVPGPIPV---LPAGAPLIDLGGAAAA--- 133 Query 113 PVPIPGGPVPIPGAPVPVPAVPAPVIPVGTPLIALGPVLAGAPGDGVVSAPIIGMSGV-K 171 APVP+PA IP G LIALGPV AG P G APII MSG K Sbjct 134 -------------APVPIPAAAPVPIPAGVSLIALGPVPAGVPAAG---APIIDMSGTGK 177 Query 172 DALTDPAPAGGPVPGQPVLPGPS 194 D PAPAGGPV GQPV PGPS Sbjct 178 DGPIGPAPAGGPVAGQPVQPGPS 200 >gi|342859187|ref|ZP_08715841.1| hypothetical protein MCOL_09923 [Mycobacterium colombiense CECT 3035] gi|342133428|gb|EGT86631.1| hypothetical protein MCOL_09923 [Mycobacterium colombiense CECT 3035] Length=174 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/91 (60%), Positives = 65/91 (72%), Gaps = 5/91 (5%) Query 4 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDAPVAAGDPVAAGG 63 MAIV+RFNIKV+AGAGL AAIALSPDAAA PL+TGG+ACI+G +G+ AAG AAG Sbjct 1 MAIVDRFNIKVVAGAGLCGAAIALSPDAAAAPLITGGHACIEGQSGEVAPAAGPGAAAGT 60 Query 64 PAAAGACSAA-----LTDMAGVPFVAPGPVP 89 AA + +TDM+GVP PGP+P Sbjct 61 VAAGAPAAGGMCAAPMTDMSGVPMAVPGPLP 91 >gi|296167707|ref|ZP_06849947.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897095|gb|EFG76709.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=55 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/48 (71%), Positives = 40/48 (84%), Gaps = 0/48 (0%) Query 4 MAIVNRFNIKVIAGAGLFAAAIALSPDAAADPLMTGGYACIQGMAGDA 51 MAIV+RF +KV+A GL AA+ALSPDAAA PL TGGYACI+G AG+A Sbjct 1 MAIVDRFGMKVVASLGLCGAALALSPDAAATPLKTGGYACIEGQAGEA 48 >gi|296167731|ref|ZP_06849948.1| hypothetical protein HMPREF0591_3389 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897074|gb|EFG76689.1| hypothetical protein HMPREF0591_3389 [Mycobacterium parascrofulaceum ATCC BAA-614] Length=93 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/61 (69%), Positives = 46/61 (76%), Gaps = 1/61 (1%) Query 135 APVIPVGTPLIALG-PVLAGAPGDGVVSAPIIGMSGVKDALTDPAPAGGPVPGQPVLPGP 193 APV+P G PL+ALG P+ AGAP D AP+I MSGVKDA T PAP GGP PGQPV PGP Sbjct 30 APVVPAGAPLVALGGPLAAGAPLDAAAGAPLIDMSGVKDAPTGPAPTGGPQPGQPVSPGP 89 Query 194 S 194 S Sbjct 90 S 90 >gi|118471215|ref|YP_885082.1| hypothetical protein MSMEG_0673 [Mycobacterium smegmatis str. MC2 155] gi|118172502|gb|ABK73398.1| hypothetical protein MSMEG_0673 [Mycobacterium smegmatis str. MC2 155] Length=180 Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust. Identities = 24/43 (56%), Positives = 30/43 (70%), Gaps = 2/43 (4%) Query 4 MAIVNRFNIKVI-AGAGLFAAAIALSPDAAA-DPLMTGGYACI 44 MAI +RFN V+ AGA L A+ LSP A+A PL+TGG AC+ Sbjct 1 MAIFDRFNCGVVAAGAALCGVALVLSPVASAVTPLVTGGDACL 43 Lambda K H 0.316 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 220408776486 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40