BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1444c
Length=136
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608582|ref|NP_215960.1| hypothetical protein Rv1444c [Mycob... 268 1e-70
gi|340626458|ref|YP_004744910.1| hypothetical protein MCAN_14601... 266 1e-69
gi|339294420|gb|AEJ46531.1| hypothetical protein CCDC5079_1341 [... 240 5e-62
gi|118617449|ref|YP_905781.1| hypothetical protein MUL_1839 [Myc... 233 8e-60
gi|240171354|ref|ZP_04750013.1| hypothetical protein MkanA1_1872... 222 1e-56
gi|254821683|ref|ZP_05226684.1| hypothetical protein MintA_17237... 199 2e-49
gi|342858737|ref|ZP_08715392.1| hypothetical protein MCOL_07666 ... 197 4e-49
gi|41407271|ref|NP_960107.1| hypothetical protein MAP1173c [Myco... 196 1e-48
gi|296170693|ref|ZP_06852268.1| conserved hypothetical protein [... 193 7e-48
gi|118465676|ref|YP_882514.1| hypothetical protein MAV_3332 [Myc... 193 8e-48
gi|333990912|ref|YP_004523526.1| hypothetical protein JDM601_227... 164 3e-39
gi|118469405|ref|YP_887413.1| hypothetical protein MSMEG_3098 [M... 117 6e-25
gi|120403692|ref|YP_953521.1| hypothetical protein Mvan_2708 [My... 112 2e-23
gi|108799376|ref|YP_639573.1| hypothetical protein Mmcs_2409 [My... 106 1e-21
gi|145224287|ref|YP_001134965.1| hypothetical protein Mflv_3705 ... 105 2e-21
gi|343925052|ref|ZP_08764584.1| hypothetical protein GOALK_033_0... 87.8 5e-16
gi|262201554|ref|YP_003272762.1| hypothetical protein Gbro_1596 ... 86.7 1e-15
gi|326381769|ref|ZP_08203462.1| hypothetical protein SCNU_02447 ... 84.3 5e-15
gi|111023090|ref|YP_706062.1| hypothetical protein RHA1_ro06127 ... 60.1 1e-07
gi|296139048|ref|YP_003646291.1| hypothetical protein Tpau_1323 ... 55.8 2e-06
gi|169629476|ref|YP_001703125.1| hypothetical protein MAB_2390 [... 49.7 2e-04
gi|89054062|ref|YP_509513.1| virulence factor MCE-like protein-l... 40.8 0.068
gi|260804161|ref|XP_002596957.1| hypothetical protein BRAFLDRAFT... 38.5 0.34
gi|281339899|gb|EFB15483.1| hypothetical protein PANDA_015781 [A... 38.5 0.37
gi|50309845|ref|XP_454936.1| hypothetical protein [Kluyveromyces... 38.1 0.42
gi|154506663|ref|ZP_02043120.1| hypothetical protein RUMGNA_0393... 38.1 0.46
gi|291542400|emb|CBL15510.1| Cation/multidrug efflux pump [Rumin... 37.4 0.69
gi|294872624|ref|XP_002766340.1| Kinesin heavy chain, putative [... 37.4 0.82
gi|295697286|ref|YP_003590524.1| hypothetical protein Btus_2731 ... 37.0 0.92
gi|333898114|ref|YP_004471988.1| protein of unknown function DUF... 37.0 0.98
gi|335438426|ref|ZP_08561170.1| chromosome segregation protein S... 36.2 1.5
gi|290974098|ref|XP_002669783.1| hypothetical protein NAEGRDRAFT... 36.2 1.5
gi|257053421|ref|YP_003131254.1| methyl-accepting chemotaxis sen... 36.2 1.8
gi|147676791|ref|YP_001211006.1| hypothetical protein PTH_0456 [... 36.2 1.8
gi|254227467|ref|ZP_04920899.1| methyl-accepting chemotaxis prot... 36.2 1.9
gi|156978217|ref|YP_001449123.1| histidine kinase [Vibrio harvey... 35.8 2.1
gi|30268331|emb|CAD89954.1| hypothetical protein [Homo sapiens] 35.8 2.1
gi|83311887|ref|YP_422151.1| methyl-accepting chemotaxis protein... 35.8 2.4
gi|145550991|ref|XP_001461173.1| hypothetical protein [Parameciu... 35.8 2.4
gi|62185161|ref|YP_219946.1| inclusion membrane protein [Chlamyd... 35.4 2.5
gi|163801505|ref|ZP_02195404.1| methyl-accepting chemotaxis prot... 35.4 2.5
gi|238922275|ref|YP_002935789.1| methyl-accepting chemotaxis pro... 35.4 2.6
gi|146297307|ref|YP_001181078.1| hypothetical protein Csac_2309 ... 35.4 2.6
gi|150400029|ref|YP_001323796.1| periplasmic copper-binding prot... 35.4 2.9
gi|224372407|ref|YP_002606779.1| methyl-accepting chemotaxis sen... 35.4 3.1
gi|28899879|ref|NP_799534.1| methyl-accepting chemotaxis protein... 35.0 3.3
gi|255099711|ref|ZP_05328688.1| putative plasmid-related protein... 35.0 3.4
gi|305662487|ref|YP_003858775.1| hypothetical protein Igag_0042 ... 35.0 3.5
gi|319951409|ref|ZP_08025228.1| hypothetical protein ES5_17139 [... 35.0 3.5
gi|328469872|gb|EGF40783.1| methyl-accepting chemotaxis protein ... 35.0 3.5
>gi|15608582|ref|NP_215960.1| hypothetical protein Rv1444c [Mycobacterium tuberculosis H37Rv]
gi|15840903|ref|NP_335940.1| hypothetical protein MT1491 [Mycobacterium tuberculosis CDC1551]
gi|31792638|ref|NP_855131.1| hypothetical protein Mb1479c [Mycobacterium bovis AF2122/97]
76 more sequence titles
Length=136
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Query 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV
Sbjct 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR
Sbjct 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
Query 121 GVLDRLRNRTVHEPTN 136
GVLDRLRNRTVHEPTN
Sbjct 121 GVLDRLRNRTVHEPTN 136
>gi|340626458|ref|YP_004744910.1| hypothetical protein MCAN_14601 [Mycobacterium canettii CIPT
140010059]
gi|340004648|emb|CCC43792.1| hypothetical protein MCAN_14601 [Mycobacterium canettii CIPT
140010059]
Length=136
Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/136 (99%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Query 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV
Sbjct 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ERLEDGLDHLEGTLHSLD+LAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLS+TEHAVR
Sbjct 61 ERLEDGLDHLEGTLHSLDELAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSLTEHAVR 120
Query 121 GVLDRLRNRTVHEPTN 136
GVLDRLRNRTVHEPTN
Sbjct 121 GVLDRLRNRTVHEPTN 136
>gi|339294420|gb|AEJ46531.1| hypothetical protein CCDC5079_1341 [Mycobacterium tuberculosis
CCDC5079]
gi|339298058|gb|AEJ50168.1| hypothetical protein CCDC5180_1331 [Mycobacterium tuberculosis
CCDC5180]
Length=123
Score = 240 bits (612), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/123 (99%), Positives = 123/123 (100%), Gaps = 0/123 (0%)
Query 14 VRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGT 73
+RRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGT
Sbjct 1 MRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGT 60
Query 74 LHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVLDRLRNRTVHE 133
LHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVLDRLRNRTVHE
Sbjct 61 LHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVLDRLRNRTVHE 120
Query 134 PTN 136
PTN
Sbjct 121 PTN 123
>gi|118617449|ref|YP_905781.1| hypothetical protein MUL_1839 [Mycobacterium ulcerans Agy99]
gi|183982262|ref|YP_001850553.1| hypothetical protein MMAR_2249 [Mycobacterium marinum M]
gi|118569559|gb|ABL04310.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183175588|gb|ACC40698.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=132
Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 116/132 (88%), Positives = 122/132 (93%), Gaps = 0/132 (0%)
Query 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
MTVMADR GRP P R+RMKTLTQAALNADKTVEQVEDVLDGLGKTM ELNSSLS LN+TV
Sbjct 1 MTVMADRGGRPTPARQRMKTLTQAALNADKTVEQVEDVLDGLGKTMNELNSSLSALNATV 60
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ERLE GLDHLEGTL SLD+LAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLS+TEH VR
Sbjct 61 ERLEGGLDHLEGTLSSLDELAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSITEHTVR 120
Query 121 GVLDRLRNRTVH 132
G LD+LRNRT +
Sbjct 121 GFLDKLRNRTAY 132
>gi|240171354|ref|ZP_04750013.1| hypothetical protein MkanA1_18726 [Mycobacterium kansasii ATCC
12478]
Length=132
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/131 (88%), Positives = 120/131 (92%), Gaps = 0/131 (0%)
Query 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
MT+MADRS R P R R+KTLTQAALNADKTVEQVEDVL+GL KTM ELNSSL+ LN+TV
Sbjct 1 MTIMADRSVRSGPERSRIKTLTQAALNADKTVEQVEDVLEGLDKTMKELNSSLTALNTTV 60
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ERLE GLDHLEGTL SLDDLAKRLIVLVEP+EAIVDRIDYIVSLGETVMSPLSVTEHAVR
Sbjct 61 ERLEGGLDHLEGTLSSLDDLAKRLIVLVEPIEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
Query 121 GVLDRLRNRTV 131
GVLDRLRNR V
Sbjct 121 GVLDRLRNRAV 131
>gi|254821683|ref|ZP_05226684.1| hypothetical protein MintA_17237 [Mycobacterium intracellulare
ATCC 13950]
Length=132
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/130 (79%), Positives = 114/130 (88%), Gaps = 0/130 (0%)
Query 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
M VMADR+ R R R+KTLTQAALNADKTVEQVEDVLDGL TM EL+SSLS LN+TV
Sbjct 1 MAVMADRTVRGGQERSRIKTLTQAALNADKTVEQVEDVLDGLSNTMKELSSSLSALNATV 60
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ERLE GLDHL+GT+ SLDDLAKRLIVLVEPVEAIV RID +V +GET+MSPL++TEHAVR
Sbjct 61 ERLEAGLDHLDGTMASLDDLAKRLIVLVEPVEAIVARIDEMVKVGETMMSPLAITEHAVR 120
Query 121 GVLDRLRNRT 130
G+LDRLRNRT
Sbjct 121 GLLDRLRNRT 130
>gi|342858737|ref|ZP_08715392.1| hypothetical protein MCOL_07666 [Mycobacterium colombiense CECT
3035]
gi|342134441|gb|EGT87621.1| hypothetical protein MCOL_07666 [Mycobacterium colombiense CECT
3035]
Length=132
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/132 (77%), Positives = 115/132 (88%), Gaps = 0/132 (0%)
Query 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
MT MADR+ R R R+KTLTQAALNADKTVEQVEDVLDGL TM EL+SSLS LN+TV
Sbjct 1 MTDMADRTVRGGQERSRIKTLTQAALNADKTVEQVEDVLDGLSNTMKELSSSLSALNATV 60
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ERLE GLDHL+GT+ SLDDLAKRLIVLVEPVEAIV R+D +V +GET++SPL++TEHAVR
Sbjct 61 ERLEAGLDHLDGTMTSLDDLAKRLIVLVEPVEAIVARVDEMVKVGETMISPLAITEHAVR 120
Query 121 GVLDRLRNRTVH 132
G +DRLRNRTVH
Sbjct 121 GFVDRLRNRTVH 132
>gi|41407271|ref|NP_960107.1| hypothetical protein MAP1173c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254775777|ref|ZP_05217293.1| hypothetical protein MaviaA2_14065 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395623|gb|AAS03490.1| hypothetical protein MAP_1173c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458000|gb|EGO36987.1| hypothetical protein MAPs_16980 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=132
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/132 (77%), Positives = 114/132 (87%), Gaps = 0/132 (0%)
Query 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
MT MADR+ R R R+KTLTQAALNADKTVEQVEDVLDGL T+ EL+SSL+ LN+TV
Sbjct 1 MTGMADRTVRGGQERSRIKTLTQAALNADKTVEQVEDVLDGLSSTLKELSSSLAALNATV 60
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ER+E GLDHL+GTL SLDDLAKRLIVLVEPVEAIV R+D +V +GETVMSPLSVTEHAVR
Sbjct 61 ERMETGLDHLDGTLASLDDLAKRLIVLVEPVEAIVARVDDLVKVGETVMSPLSVTEHAVR 120
Query 121 GVLDRLRNRTVH 132
G++DRLRNRT
Sbjct 121 GLVDRLRNRTAQ 132
>gi|296170693|ref|ZP_06852268.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894682|gb|EFG74416.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=129
Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 98/129 (76%), Positives = 113/129 (88%), Gaps = 0/129 (0%)
Query 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
MTVMADR+ R R R+KTLTQAALNADKTVEQVEDVLDGL TM +LN+SLS+LN+TV
Sbjct 1 MTVMADRTVRGGQERSRIKTLTQAALNADKTVEQVEDVLDGLSTTMKDLNASLSRLNATV 60
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ER+E GLDHL+GTL LDDLA+RLIVLVEPVEAIV RID +V +GET+M+PL++TEHAVR
Sbjct 61 ERMESGLDHLDGTLSRLDDLARRLIVLVEPVEAIVSRIDEMVKVGETMMTPLAMTEHAVR 120
Query 121 GVLDRLRNR 129
G LDRLRNR
Sbjct 121 GALDRLRNR 129
>gi|118465676|ref|YP_882514.1| hypothetical protein MAV_3332 [Mycobacterium avium 104]
gi|118166963|gb|ABK67860.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=129
Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 99/129 (77%), Positives = 112/129 (87%), Gaps = 0/129 (0%)
Query 4 MADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERL 63
MADR+ R R R+KTLTQAALNADKTVEQVEDVLDGL T+ EL+SSL+ LN+TVER+
Sbjct 1 MADRTVRGGQERSRIKTLTQAALNADKTVEQVEDVLDGLSSTLKELSSSLAALNATVERM 60
Query 64 EDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVL 123
E GLDHL+GTL SLDDLAKRLIVLVEPVEAIV R+D +V +GETVMSPLSVTEHAVRG++
Sbjct 61 ETGLDHLDGTLASLDDLAKRLIVLVEPVEAIVARVDDLVKVGETVMSPLSVTEHAVRGLV 120
Query 124 DRLRNRTVH 132
DRLRNRT
Sbjct 121 DRLRNRTAQ 129
>gi|333990912|ref|YP_004523526.1| hypothetical protein JDM601_2272 [Mycobacterium sp. JDM601]
gi|333486880|gb|AEF36272.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/129 (66%), Positives = 101/129 (79%), Gaps = 0/129 (0%)
Query 4 MADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERL 63
MADR R R+KTL QAALNAD TV Q+EDVL+GLG TM LNSSL+ LN+TVERL
Sbjct 1 MADRGSGTGGERNRLKTLAQAALNADVTVGQLEDVLNGLGDTMNALNSSLAGLNATVERL 60
Query 64 EDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVL 123
DGLDHL+ T+ SLDDLA+RL+ L+EPVE IV R+D IVS+GET M+PL+ TE+ VRG+
Sbjct 61 GDGLDHLDETMASLDDLARRLVALIEPVETIVSRMDDIVSVGETAMAPLAATENMVRGMF 120
Query 124 DRLRNRTVH 132
+ LRNRTV
Sbjct 121 NALRNRTVR 129
>gi|118469405|ref|YP_887413.1| hypothetical protein MSMEG_3098 [Mycobacterium smegmatis str.
MC2 155]
gi|118170692|gb|ABK71588.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=123
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/128 (53%), Positives = 89/128 (70%), Gaps = 8/128 (6%)
Query 4 MADRS-GRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVER 62
MAD+ GR PV R+KTLTQAALNAD TVEQVE +LD EL+S+L LN T
Sbjct 1 MADKGDGRGRPVSGRIKTLTQAALNADMTVEQVETLLD-------ELSSTLVDLNKTTGG 53
Query 63 LEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGV 122
L+D L T+ +D+LA RLI +VE +E IV R++ +V +GE VMSP+++TE+AVRGV
Sbjct 54 LDDTLARFNDTITRIDELAPRLIGVVERLEGIVSRVEAMVGIGEAVMSPIAMTENAVRGV 113
Query 123 LDRLRNRT 130
+ ++R RT
Sbjct 114 VGQVRKRT 121
>gi|120403692|ref|YP_953521.1| hypothetical protein Mvan_2708 [Mycobacterium vanbaalenii PYR-1]
gi|119956510|gb|ABM13515.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=123
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/130 (47%), Positives = 92/130 (71%), Gaps = 12/130 (9%)
Query 4 MADRSGRPAPVR---RRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
MAD+ GRP VR R++ L QAA+NAD TVEQV+ +L+GLG+T+ +LN + + L+ T+
Sbjct 1 MADKGGRP--VRTGPERIRKLAQAAMNADVTVEQVDTILEGLGETLEDLNKATANLDVTL 58
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ER D T++ +++LA RL +V+ +E IV R++ IV +GE+V+SPL+ TEHA+R
Sbjct 59 ERFND-------TINQINELAPRLHGVVDRMEGIVTRVERIVGVGESVISPLAATEHAIR 111
Query 121 GVLDRLRNRT 130
G +DR+R T
Sbjct 112 GAVDRVRRST 121
>gi|108799376|ref|YP_639573.1| hypothetical protein Mmcs_2409 [Mycobacterium sp. MCS]
gi|119868490|ref|YP_938442.1| hypothetical protein Mkms_2455 [Mycobacterium sp. KMS]
gi|126435033|ref|YP_001070724.1| hypothetical protein Mjls_2449 [Mycobacterium sp. JLS]
gi|108769795|gb|ABG08517.1| hypothetical protein Mmcs_2409 [Mycobacterium sp. MCS]
gi|119694579|gb|ABL91652.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126234833|gb|ABN98233.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=127
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/132 (45%), Positives = 86/132 (66%), Gaps = 9/132 (6%)
Query 1 MTVMADRSGRPAP--VRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNS 58
M +M DRSGR R++ L QAALNAD TVEQV+ +LDGL T+ +LN S + L+
Sbjct 1 MAIMVDRSGRGTTRTGTERIRKLAQAALNADVTVEQVDTILDGLSDTLDDLNRSTANLDV 60
Query 59 TVERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHA 118
T+ER + T++ ++ LA RLI +V+ +E IV R++ +V +GE V+ PL+ TE+A
Sbjct 61 TLERFNE-------TINQINALAPRLIAVVDQMEGIVGRVERLVGMGEAVLGPLAATENA 113
Query 119 VRGVLDRLRNRT 130
VRG L+ +R T
Sbjct 114 VRGALNAVRRST 125
>gi|145224287|ref|YP_001134965.1| hypothetical protein Mflv_3705 [Mycobacterium gilvum PYR-GCK]
gi|315444620|ref|YP_004077499.1| hypothetical protein Mspyr1_30470 [Mycobacterium sp. Spyr1]
gi|145216773|gb|ABP46177.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315262923|gb|ADT99664.1| hypothetical protein Mspyr1_30470 [Mycobacterium sp. Spyr1]
Length=123
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/128 (46%), Positives = 86/128 (68%), Gaps = 12/128 (9%)
Query 4 MADRSGRPAPVR---RRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
MAD+ GRP VR R++ L QAALNAD TVEQV+ +L+GL +T+ +LN S+ +L+ T+
Sbjct 1 MADKGGRP--VRTGPERIRKLAQAALNADVTVEQVDTILEGLSETLEDLNHSMEKLDVTL 58
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVR 120
ER + H+ ++LA RLI +V+ +E IV R++ IV +GE+V+ PL+ TE +R
Sbjct 59 ERFNGAITHI-------NELAPRLIAVVDRMEGIVTRVERIVGMGESVIMPLAATEQVIR 111
Query 121 GVLDRLRN 128
G L R+R
Sbjct 112 GALGRVRK 119
>gi|343925052|ref|ZP_08764584.1| hypothetical protein GOALK_033_00430 [Gordonia alkanivorans NBRC
16433]
gi|343764983|dbj|GAA11510.1| hypothetical protein GOALK_033_00430 [Gordonia alkanivorans NBRC
16433]
Length=126
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/123 (40%), Positives = 74/123 (61%), Gaps = 0/123 (0%)
Query 4 MADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERL 63
M D S P R+R+K L QAA NAD TVEQ+E +L +G+T+ L ++ L++T+E+L
Sbjct 1 MVDTSSSKPPERQRIKKLAQAAFNADVTVEQLEGILADMGETLEGLGPTMGNLDATIEKL 60
Query 64 EDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVL 123
+ L + GTL +D R+ +V +E +V R++ +V +GE + PL V E A + V
Sbjct 61 DATLVRMSGTLDKVDTTVGRMSDVVARLERVVARVEVLVGIGEAALRPLGVLESAGKSVA 120
Query 124 DRL 126
RL
Sbjct 121 ARL 123
>gi|262201554|ref|YP_003272762.1| hypothetical protein Gbro_1596 [Gordonia bronchialis DSM 43247]
gi|262084901|gb|ACY20869.1| hypothetical protein Gbro_1596 [Gordonia bronchialis DSM 43247]
Length=130
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/127 (40%), Positives = 76/127 (60%), Gaps = 4/127 (3%)
Query 4 MADRS----GRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNST 59
MADR G P R+R++ L QAALNAD TVEQ+ ++D +G+T+ + ++ +NST
Sbjct 1 MADRGTQSPGSRPPERQRIRKLAQAALNADVTVEQLTTIIDDMGETIDGIGDTMVGMNST 60
Query 60 VERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAV 119
VE+L+ L+ + TL +D R+ +V +E +V R++ IV +GE PL E A
Sbjct 61 VEKLDATLNRMSNTLDQVDATVDRMAEVVARMERVVGRVEAIVEIGELATRPLGALESAG 120
Query 120 RGVLDRL 126
R V+ RL
Sbjct 121 RSVIARL 127
>gi|326381769|ref|ZP_08203462.1| hypothetical protein SCNU_02447 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199195|gb|EGD56376.1| hypothetical protein SCNU_02447 [Gordonia neofelifaecis NRRL
B-59395]
Length=137
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 71/115 (62%), Gaps = 1/115 (0%)
Query 4 MADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERL 63
+ DR R R+R++ L QAALNAD+TV+QVE +L +G + L +++ L+ST+E+L
Sbjct 6 IVDRPSRGGD-RQRLRKLAQAALNADQTVDQVEGILGDVGPVLGSLGNTIDGLDSTIEKL 64
Query 64 EDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHA 118
LD L GTL +DD R+ +V +E +V R++ IVS+ E P+ + E A
Sbjct 65 NVTLDELNGTLAKVDDTVGRMSDVVMRLEKVVGRVEIIVSVAEQAFKPIGMLESA 119
>gi|111023090|ref|YP_706062.1| hypothetical protein RHA1_ro06127 [Rhodococcus jostii RHA1]
gi|110822620|gb|ABG97904.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=125
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/106 (30%), Positives = 61/106 (58%), Gaps = 0/106 (0%)
Query 17 RMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHS 76
R++ LTQAALNAD T+ +V+ V +G ++ E L + ++ +++ DGLD GT+ S
Sbjct 17 RIRRLTQAALNADVTIGRVDGVAHEIGTSLDEFARVLGRFDALLDKFADGLDTFAGTVRS 76
Query 77 LDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGV 122
+D + L + ++ ++ R+ IV + +++P + H + G+
Sbjct 77 VDGVVGSLTAPEQDLDELLLRVGRIVETVDWLLTPATAVRHRLAGI 122
>gi|296139048|ref|YP_003646291.1| hypothetical protein Tpau_1323 [Tsukamurella paurometabola DSM
20162]
gi|296027182|gb|ADG77952.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=124
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (36%), Positives = 48/81 (60%), Gaps = 0/81 (0%)
Query 15 RRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTL 74
R R++ L AALNAD T++Q VLDGL +TM ++++++ ++T+ R+ LD E L
Sbjct 12 RARIRNLASAALNADVTIDQATTVLDGLAQTMQGMDTTMTDFDATLARVNRNLDEFERLL 71
Query 75 HSLDDLAKRLIVLVEPVEAIV 95
+ +R VE V A++
Sbjct 72 STFTATLERADAAVEKVNAVL 92
>gi|169629476|ref|YP_001703125.1| hypothetical protein MAB_2390 [Mycobacterium abscessus ATCC 19977]
gi|169241443|emb|CAM62471.1| Hypothetical protein MAB_2390 [Mycobacterium abscessus]
Length=131
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (29%), Positives = 57/112 (51%), Gaps = 1/112 (0%)
Query 3 VMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVER 62
V RPAP R+ ++ L ALN D TV +E + + + S L L+S++ER
Sbjct 4 VYTSNGNRPAPTRK-IRKLANVALNIDGTVGHIESMAVEVHDLTDRVGSMLDHLDSSLER 62
Query 63 LEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSV 114
L+D LD L TL++L + L + +E ++D ++ ++ + + P +
Sbjct 63 LDDSLDSLNLTLNNLAETTSTLANTMTSLETLIDVVNPLIRVLRVALYPTKI 114
>gi|89054062|ref|YP_509513.1| virulence factor MCE-like protein-like protein [Jannaschia sp.
CCS1]
gi|88863611|gb|ABD54488.1| Mammalian cell entry-related protein [Jannaschia sp. CCS1]
Length=808
Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/93 (35%), Positives = 53/93 (57%), Gaps = 10/93 (10%)
Query 18 MKTLTQAALNADKTVEQVEDVL-----DGLGKTMAELNSSLSQLNSTVERLEDG--LDHL 70
+ +T AA +AD+ + ++ED+L DGL T LN++L++L + + L +G ++L
Sbjct 668 VSPVTAAANSADRVLLRIEDILSSESADGLPDT---LNTALTELGAILATLREGGAAENL 724
Query 71 EGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVS 103
GTL S D L E V AIV R++ +V+
Sbjct 725 TGTLSSADSAFSALQSAAEQVPAIVTRLNSLVT 757
>gi|260804161|ref|XP_002596957.1| hypothetical protein BRAFLDRAFT_76456 [Branchiostoma floridae]
gi|229282218|gb|EEN52969.1| hypothetical protein BRAFLDRAFT_76456 [Branchiostoma floridae]
Length=438
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 31/111 (28%), Positives = 56/111 (51%), Gaps = 16/111 (14%)
Query 32 VEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAKR---LIVLV 88
+ Q+ D +DGL + M ++ SQL+ TV+ L+ +D + + DDL + + L
Sbjct 195 MSQLSDTVDGLKRNMDDM----SQLSDTVDGLKRSMDDISQLSDAFDDLKRNRDDMSQLS 250
Query 89 EPVEAIVDRIDYIVSLGETV---------MSPLSVTEHAVRGVLDRLRNRT 130
+ V+ + +D + L +TV MS LS T ++ ++D RNR+
Sbjct 251 DTVDGLKRNMDGMSQLSDTVDGLKRSMDDMSQLSNTVDDLKRIMDIERNRS 301
>gi|281339899|gb|EFB15483.1| hypothetical protein PANDA_015781 [Ailuropoda melanoleuca]
Length=2487
Score = 38.5 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 23/84 (28%), Positives = 45/84 (54%), Gaps = 3/84 (3%)
Query 23 QAALNADKTVEQVEDV---LDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDD 79
QA A + Q++D+ LDGL K +L S+++ N+ V+ + + T+ +L+
Sbjct 1415 QANDTAKDVLAQIKDLHQNLDGLKKNYNQLTDSVAKTNAVVKDPSKNIADADATVKNLEQ 1474
Query 80 LAKRLIVLVEPVEAIVDRIDYIVS 103
A RLI ++P++ + D + +S
Sbjct 1475 EADRLIDKLKPIKELEDNLKKNIS 1498
>gi|50309845|ref|XP_454936.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644071|emb|CAH00023.1| KLLA0E21759p [Kluyveromyces lactis]
Length=275
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/66 (29%), Positives = 35/66 (54%), Gaps = 0/66 (0%)
Query 34 QVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEA 93
+ ED D + + + ELN SLS +N V LE + H + +D++ K+ + L++
Sbjct 16 EFEDCCDAISQDLFELNGSLSTMNHFVTALETNVSHGKSNTKVIDNINKKTVELIDKSTK 75
Query 94 IVDRID 99
+V I+
Sbjct 76 LVSSIN 81
>gi|154506663|ref|ZP_02043120.1| hypothetical protein RUMGNA_03930 [Ruminococcus gnavus ATCC 29149]
gi|153793312|gb|EDN75735.1| hypothetical protein RUMGNA_03930 [Ruminococcus gnavus ATCC 29149]
Length=242
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/120 (26%), Positives = 55/120 (46%), Gaps = 15/120 (12%)
Query 13 PVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEG 72
+ R+ + + Q D+ EQ++ D + + + +++ Q++ RLED LEG
Sbjct 104 QIDRKFEQIDQKFEQIDRKFEQIDQKFDQMDRKLEQIDQKFEQIDR---RLEDMNQRLEG 160
Query 73 TLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPL-SVTEHAVRGVLDRLRNRTV 131
T LD + ++L D I+ + V+S L +V EHA +R+ NR V
Sbjct 161 TNRRLDCVEQKL----------KDMEHTIIEVESNVLSELDTVQEHA-NNRSERIENRLV 209
>gi|291542400|emb|CBL15510.1| Cation/multidrug efflux pump [Ruminococcus bromii L2-63]
Length=1345
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/72 (27%), Positives = 41/72 (57%), Gaps = 1/72 (1%)
Query 9 GRPAP-VRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGL 67
G AP + + M+T+ + + + ++ VE L+ LG + +NS+LS+++ + ++ G+
Sbjct 361 GIKAPDIAKTMQTVQNSINKSAEAIQNVEISLEKLGTSGDAINSALSEMSEKISQINSGI 420
Query 68 DHLEGTLHSLDD 79
L+ + LDD
Sbjct 421 AQLDNAISGLDD 432
>gi|294872624|ref|XP_002766340.1| Kinesin heavy chain, putative [Perkinsus marinus ATCC 50983]
gi|239867145|gb|EEQ99057.1| Kinesin heavy chain, putative [Perkinsus marinus ATCC 50983]
Length=121
Score = 37.4 bits (85), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 48/76 (64%), Gaps = 4/76 (5%)
Query 30 KTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLH----SLDDLAKRLI 85
K++EQ+ + LD +G+ + +++ SL Q++++++++ + L+ + +L SLD ++K L
Sbjct 25 KSLEQISESLDQIGENLEQISESLEQIDASLDQISESLEQISESLEQISKSLDQISKSLD 84
Query 86 VLVEPVEAIVDRIDYI 101
+ + ++ I +D I
Sbjct 85 QISKSLDQISRTVDQI 100
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/106 (29%), Positives = 60/106 (57%), Gaps = 7/106 (6%)
Query 31 TVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAKRLIVLVEP 90
++EQ++ LD L K++ +++ SL Q+ +E++ + L+ ++ SLD +++ L + E
Sbjct 12 SLEQIDASLDQLSKSLEQISESLDQIGENLEQISESLEQIDA---SLDQISESLEQISES 68
Query 91 VEAIVDRIDYIV-SLGETVMS--PLSVTEHAVRGVLDRLRNRTVHE 133
+E I +D I SL + S +S T + LD++ +RTV +
Sbjct 69 LEQISKSLDQISKSLDQISKSLDQISRTVDQISKSLDQI-SRTVDQ 113
>gi|295697286|ref|YP_003590524.1| hypothetical protein Btus_2731 [Bacillus tusciae DSM 2912]
gi|295412888|gb|ADG07380.1| protein of unknown function DUF16 [Bacillus tusciae DSM 2912]
Length=154
Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/118 (25%), Positives = 56/118 (48%), Gaps = 14/118 (11%)
Query 4 MADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERL 63
AD R + R+ L Q ++ ++++E+ LD + + + + L ++ ++R+
Sbjct 33 FADMDRRFEQIEVRLDRLEQRQDRIEERLDRIEERLDRIEERLDRVEERLDRVEERLDRV 92
Query 64 EDGLDHLEGTLHSL-----------DDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMS 110
E+ L H+E T+ + D + RL + + VE I DR++Y L E VM
Sbjct 93 EERLGHVETTVQEIQADLTALKTQVDQMDTRLAGVEQKVEKIHDRVEY---LKEKVME 147
>gi|333898114|ref|YP_004471988.1| protein of unknown function DUF16 [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333113379|gb|AEF18316.1| protein of unknown function DUF16 [Thermoanaerobacterium xylanolyticum
LX-11]
Length=208
Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/121 (27%), Positives = 64/121 (53%), Gaps = 3/121 (2%)
Query 8 SGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGL 67
GR V +R+ + + N DK ++ VE LDG+ + L+S ++L+ +RL+
Sbjct 25 DGRLVSVEKRLDDVDKRLDNMDKRLDNVEKRLDGVE---SRLDSVENRLDGMDKRLDSVE 81
Query 68 DHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVLDRLR 127
+ L+G LD + RL + + ++++ +++D + ++V S L + + GV +RL
Sbjct 82 NRLDGMDKRLDSVENRLDGMDKRLDSVENKLDGMDKRLDSVESRLDGMDKRLDGVENRLY 141
Query 128 N 128
N
Sbjct 142 N 142
>gi|335438426|ref|ZP_08561170.1| chromosome segregation protein SMC [Halorhabdus tiamatea SARL4B]
gi|334892047|gb|EGM30291.1| chromosome segregation protein SMC [Halorhabdus tiamatea SARL4B]
Length=1188
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 61/160 (39%), Gaps = 36/160 (22%)
Query 4 MADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAEL-------------- 49
+AD G +R ++ Q + V ++E +DG +T + L
Sbjct 902 LADLKGDREDLRAELQAAQQERDEQKERVNEIESNVDGKRETESRLEWEIDELEDAVGEY 961
Query 50 -----------NSSLSQLNSTVERLE-------DGLDHLEGTLHSLDDLAKRLIVLVEPV 91
+ + QL + +ERLE + D +E L L+D + LVE
Sbjct 962 DPEEIPNHHTVQTRIGQLEAEMERLEPVNMLAIEEYDEVEADLADLED---KRGTLVEEA 1018
Query 92 EAIVDRID-YIVSLGETVMSPLSVTEHAVRGVLDRLRNRT 130
E I DRID Y ET M + R + +RL N T
Sbjct 1019 EGIRDRIDSYEARKKETFMEAFESIDAQFRDIFERLSNGT 1058
>gi|290974098|ref|XP_002669783.1| hypothetical protein NAEGRDRAFT_82029 [Naegleria gruberi]
gi|284083335|gb|EFC37039.1| hypothetical protein NAEGRDRAFT_82029 [Naegleria gruberi]
Length=767
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 25/96 (27%), Positives = 49/96 (52%), Gaps = 6/96 (6%)
Query 24 AALNADKTVEQVEDVLDGLGKTMAELNSSL---SQLNSTVERLEDGLDHLEGTLHSLDDL 80
A NA+ V Q+ +G KT+ L L ++ S ++ DG ++G+L L +L
Sbjct 523 AMANAEDFVSQLNTFTNGRSKTLVSLVEKLKKGQKVTSVTSKILDGAKGIKGSLEQLKNL 582
Query 81 AK---RLIVLVEPVEAIVDRIDYIVSLGETVMSPLS 113
K + ++ E ++ +++R+ S GE ++S L+
Sbjct 583 KKEDMQKVLDAEHLQGVLNRVAGAFSKGENIVSELN 618
>gi|257053421|ref|YP_003131254.1| methyl-accepting chemotaxis sensory transducer [Halorhabdus utahensis
DSM 12940]
gi|256692184|gb|ACV12521.1| methyl-accepting chemotaxis sensory transducer [Halorhabdus utahensis
DSM 12940]
Length=441
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/121 (26%), Positives = 60/121 (50%), Gaps = 11/121 (9%)
Query 3 VMADRSGRP----APVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNS 58
+ A R+G A V +K+L A A + E +E ++DG+ E SL Q +
Sbjct 292 IEAARAGEAGEGFAVVAEEVKSL---AEQAQQNAETIESMIDGIQADTEETARSLDQATA 348
Query 59 TVERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPL-SVTEH 117
TV +DG++ ++ ++ +L+++ + + + +E + + D + E V S + VTE
Sbjct 349 TV---DDGIEKVQASMRALEEIVEAVQEAADGIEEVAEATDDQAASAEEVASLVDEVTEQ 405
Query 118 A 118
A
Sbjct 406 A 406
>gi|147676791|ref|YP_001211006.1| hypothetical protein PTH_0456 [Pelotomaculum thermopropionicum
SI]
gi|146272888|dbj|BAF58637.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length=133
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (30%), Positives = 37/65 (57%), Gaps = 0/65 (0%)
Query 14 VRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGT 73
+R+ + L Q + ++++ED +DGL M L + + +L + ++RLED +D LE
Sbjct 30 LRKGQEELKQGQERLEARMDRLEDRMDGLEARMDRLEARMDRLEARMDRLEDRMDGLEAR 89
Query 74 LHSLD 78
+ L+
Sbjct 90 MDRLE 94
>gi|254227467|ref|ZP_04920899.1| methyl-accepting chemotaxis protein (MCP) signaling domain [Vibrio
sp. Ex25]
gi|262396268|ref|YP_003288121.1| methyl-accepting chemotaxis protein [Vibrio sp. Ex25]
gi|151940079|gb|EDN58905.1| methyl-accepting chemotaxis protein (MCP) signaling domain [Vibrio
sp. Ex25]
gi|262339862|gb|ACY53656.1| methyl-accepting chemotaxis protein [Vibrio sp. Ex25]
Length=553
Score = 36.2 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 20/94 (22%), Positives = 46/94 (49%), Gaps = 2/94 (2%)
Query 2 TVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVE 61
T M + + + +A NAD +Q + ++D ++ L + +S+ ++ +
Sbjct 315 TAMTEMTATAHEISGNANQAADSAKNADDNAQQAKHIVDSAANSVEALANEVSEASTVIS 374
Query 62 RLEDGLDHLEGTLHSLDDLAKR--LIVLVEPVEA 93
RLE + ++ +L + D+A++ L+ L +EA
Sbjct 375 RLESDVQNISSSLEVIQDIAEQTNLLALNAAIEA 408
>gi|156978217|ref|YP_001449123.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
gi|156529811|gb|ABU74896.1| hypothetical protein VIBHAR_07022 [Vibrio harveyi ATCC BAA-1116]
Length=553
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 19/73 (27%), Positives = 42/73 (58%), Gaps = 2/73 (2%)
Query 23 QAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAK 82
Q+A +ADK +Q + ++D ++ L +S+ ++ + RLE + ++ +L + D+A+
Sbjct 336 QSAKDADKNSQQAKHIVDSAANSVEALALEVSEASTVISRLESDVQNISSSLEVIQDIAE 395
Query 83 R--LIVLVEPVEA 93
+ L+ L +EA
Sbjct 396 QTNLLALNAAIEA 408
>gi|30268331|emb|CAD89954.1| hypothetical protein [Homo sapiens]
Length=1331
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 22/67 (33%), Positives = 39/67 (59%), Gaps = 3/67 (4%)
Query 34 QVEDVL---DGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAKRLIVLVEP 90
++ED++ D +GK++ EL S L VE ++ L+ LEG L + +D RL V ++
Sbjct 927 EMEDLMSSKDDVGKSVHELEKSKRALEQQVEEMKTQLEELEGELQATEDAKLRLEVNLQA 986
Query 91 VEAIVDR 97
++A +R
Sbjct 987 MKAQFER 993
>gi|83311887|ref|YP_422151.1| methyl-accepting chemotaxis protein [Magnetospirillum magneticum
AMB-1]
gi|82946728|dbj|BAE51592.1| Methyl-accepting chemotaxis protein [Magnetospirillum magneticum
AMB-1]
Length=690
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/90 (22%), Positives = 46/90 (52%), Gaps = 0/90 (0%)
Query 9 GRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLD 68
G+ ++R T + + D TV ++ ++ + + E N++ S++ S++++ DG+
Sbjct 579 GQVGAIQRGTATASHSIAGIDSTVGRISEMATSIASAVEEQNAATSEIASSIQQASDGVG 638
Query 69 HLEGTLHSLDDLAKRLIVLVEPVEAIVDRI 98
+ GT+ + + A E V+A +R+
Sbjct 639 AVAGTITHVRENAASTDRAAESVQAAAERL 668
>gi|145550991|ref|XP_001461173.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429006|emb|CAK93800.1| unnamed protein product [Paramecium tetraurelia]
Length=1107
Score = 35.8 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 16/69 (24%), Positives = 38/69 (56%), Gaps = 0/69 (0%)
Query 15 RRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTL 74
RR+ ++ + A N KT +Q++ + LG+ +L L +N+ + L+ + +++ +L
Sbjct 952 RRQSESTNKEAENNRKTQQQLQQTISNLGQQNQQLKEQLQTVNNENQSLQSQIQYMQNSL 1011
Query 75 HSLDDLAKR 83
H D + ++
Sbjct 1012 HERDQMIQK 1020
>gi|62185161|ref|YP_219946.1| inclusion membrane protein [Chlamydophila abortus S26/3]
gi|62148228|emb|CAH63987.1| inclusion membrane protein [Chlamydophila abortus S26/3]
Length=380
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/126 (25%), Positives = 60/126 (48%), Gaps = 5/126 (3%)
Query 1 MTVMADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV 60
+ +M + P+ V RRMK Q + ++ ++ L EL +++L
Sbjct 112 IVIMVIQDSTPSQVARRMK---QQLHQFSQENTRLHQEVNTLVSANIELTRQIAELKQLH 168
Query 61 ERLEDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLS--VTEHA 118
E+L D + LE DDL V +E +++ +R++ IVS E + + L+ ++ A
Sbjct 169 EQLSDFGNKLETCTGEFDDLISEFKVNLEAFKSLGNRVETIVSPFERLAASLTEVFSKEA 228
Query 119 VRGVLD 124
V+ ++D
Sbjct 229 VKNMVD 234
>gi|163801505|ref|ZP_02195404.1| methyl-accepting chemotaxis protein [Vibrio sp. AND4]
gi|159174994|gb|EDP59794.1| methyl-accepting chemotaxis protein [Vibrio sp. AND4]
Length=553
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 18/73 (25%), Positives = 43/73 (59%), Gaps = 2/73 (2%)
Query 23 QAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAK 82
Q+A +AD++ +Q + ++D ++ L +S+ ++ + RLE + ++ +L + D+A+
Sbjct 336 QSAKDADESSQQAKQIVDSAANSVEALALEVSEASTVISRLESDVQNISSSLEVIQDIAE 395
Query 83 R--LIVLVEPVEA 93
+ L+ L +EA
Sbjct 396 QTNLLALNAAIEA 408
>gi|238922275|ref|YP_002935789.1| methyl-accepting chemotaxis protein [Eubacterium eligens ATCC
27750]
gi|238873947|gb|ACR73655.1| methyl-accepting chemotaxis protein [Eubacterium eligens ATCC
27750]
Length=504
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 27/115 (24%), Positives = 54/115 (47%), Gaps = 15/115 (13%)
Query 25 ALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTV-----------ERLEDGLDHLEGT 73
A+N + +E ++ LD L + ++N + SQ+N+ + ER++D D +
Sbjct 209 AINLNSAIENCKNGLDNLSEQATKVNEAASQMNTVIDDTTNATISVTERIQDATDEINKN 268
Query 74 LHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVLDRLRN 128
+L+K L E V+ V + V++ + +S ++ T + RG + L N
Sbjct 269 Y----ELSKELDAGFEKVDTSVRAGNNEVNVVKNTLSEMAETVGSARGAMSELMN 319
>gi|146297307|ref|YP_001181078.1| hypothetical protein Csac_2309 [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410883|gb|ABP67887.1| hypothetical protein Csac_2309 [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length=198
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/88 (27%), Positives = 46/88 (53%), Gaps = 4/88 (4%)
Query 18 MKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSL 77
+++L + N K +E +E L+G+GK + + L + ++ +E LD +E L ++
Sbjct 14 LQSLNASFENVGKRLENIEKQLEGMGKRIDSMEKRLDSVEKRLDSVEKRLDSVEKRLDTM 73
Query 78 ----DDLAKRLIVLVEPVEAIVDRIDYI 101
D L KRL L + ++ + R+D +
Sbjct 74 EKRFDQLEKRLDSLEQKLDRVEQRLDMV 101
>gi|150400029|ref|YP_001323796.1| periplasmic copper-binding protein [Methanococcus vannielii SB]
gi|150012732|gb|ABR55184.1| periplasmic copper-binding [Methanococcus vannielii SB]
Length=831
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 16/74 (22%), Positives = 42/74 (57%), Gaps = 0/74 (0%)
Query 29 DKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAKRLIVLV 88
+ TV+ + + +D + T+ +N+++ +N+TV+ + + +D + T+ +++ + V
Sbjct 695 NNTVDPINNTVDPINNTVDPINNTVDPINNTVDPINNTVDPINNTVDPINNTVDPINNTV 754
Query 89 EPVEAIVDRIDYIV 102
+P+ VD I+ V
Sbjct 755 DPINNTVDPINNTV 768
Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 18/84 (22%), Positives = 45/84 (54%), Gaps = 0/84 (0%)
Query 19 KTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLD 78
+TLT N ++ + + +D + T+ +N+++ +N+TV+ + + +D + T+ ++
Sbjct 678 ETLTFKIENKEELKNPINNTVDPINNTVDPINNTVDPINNTVDPINNTVDPINNTVDPIN 737
Query 79 DLAKRLIVLVEPVEAIVDRIDYIV 102
+ + V+P+ VD I+ V
Sbjct 738 NTVDPINNTVDPINNTVDPINNTV 761
Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats.
Identities = 17/84 (21%), Positives = 45/84 (54%), Gaps = 0/84 (0%)
Query 32 VEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAKRLIVLVEPV 91
+E E++ + + T+ +N+++ +N+TV+ + + +D + T+ +++ + V+P+
Sbjct 684 IENKEELKNPINNTVDPINNTVDPINNTVDPINNTVDPINNTVDPINNTVDPINNTVDPI 743
Query 92 EAIVDRIDYIVSLGETVMSPLSVT 115
VD I+ V + P++ T
Sbjct 744 NNTVDPINNTVDPINNTVDPINNT 767
>gi|224372407|ref|YP_002606779.1| methyl-accepting chemotaxis sensory transducer [Nautilia profundicola
AmH]
gi|223588539|gb|ACM92275.1| methyl-accepting chemotaxis sensory transducer [Nautilia profundicola
AmH]
Length=651
Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 24/104 (24%), Positives = 58/104 (56%), Gaps = 10/104 (9%)
Query 21 LTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDL 80
+ +A+ N D++ + V ++++ K E++ S+ ++ S+ +++ED +++ E + S++++
Sbjct 548 VMEASTNMDESAKNVLELVEDASKAKEEIDKSMGKMLSSTKKVEDLVNNFEVSAKSIEEV 607
Query 81 AKRLIVL-------VEPVEAIVDRIDYIVSLGETVMSPLSVTEH 117
+K L + E VE I+ ID SL + + S+ +H
Sbjct 608 SKNLEEVKNISKNNAENVEKIIKAID---SLNQMIKELDSLLQH 648
>gi|28899879|ref|NP_799534.1| methyl-accepting chemotaxis protein [Vibrio parahaemolyticus
RIMD 2210633]
gi|153838255|ref|ZP_01990922.1| methyl-accepting chemotaxis protein [Vibrio parahaemolyticus
AQ3810]
gi|260363179|ref|ZP_05776048.1| methyl-accepting chemotaxis protein [Vibrio parahaemolyticus
K5030]
9 more sequence titles
Length=553
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/73 (25%), Positives = 44/73 (61%), Gaps = 2/73 (2%)
Query 23 QAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAK 82
++A +AD+ +Q + ++D ++ EL S +S+ ++ + R+E + ++ +L + D+A+
Sbjct 336 ESARHADENAQQAKHIVDSAANSVEELASEVSEASTVIARVESDVQNISSSLEVIQDIAE 395
Query 83 R--LIVLVEPVEA 93
+ L+ L +EA
Sbjct 396 QTNLLALNAAIEA 408
>gi|255099711|ref|ZP_05328688.1| putative plasmid-related protein [Clostridium difficile QCD-63q42]
Length=212
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/68 (21%), Positives = 40/68 (59%), Gaps = 0/68 (0%)
Query 32 VEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAKRLIVLVEPV 91
+ +E+ + G+ T+ ++ S+S +N T+ ++ + ++GT++S+ D + V ++ V
Sbjct 65 INGIENTISGMQGTIGDMQGSISGMNGTISDMQGSISSMDGTINSMQDSITDMQVEIKEV 124
Query 92 EAIVDRID 99
+ +D ++
Sbjct 125 NSRLDNME 132
>gi|305662487|ref|YP_003858775.1| hypothetical protein Igag_0042 [Ignisphaera aggregans DSM 17230]
gi|304377056|gb|ADM26895.1| hypothetical protein Igag_0042 [Ignisphaera aggregans DSM 17230]
Length=460
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 23/123 (19%), Positives = 61/123 (50%), Gaps = 3/123 (2%)
Query 4 MADRSGRPAPVRRRMKTLTQAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERL 63
+AD S R + +K++ + +V+ V + ++ + + +A + ++++ LN+ + L
Sbjct 207 LADLSKRVKALEDEIKSIKDSVDAMKNSVDTVNNNINVVSQRIASIENAINALNTALSDL 266
Query 64 EDGLDHLEGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVL 123
++ +D G S++ L + + + + ++D I S + V + +AV GV+
Sbjct 267 KNAVD---GVSKSVNTLTNNIAAITSNLNTVASKVDTISSKVDAVSGKVDSVLNAVSGVV 323
Query 124 DRL 126
++
Sbjct 324 SKI 326
>gi|319951409|ref|ZP_08025228.1| hypothetical protein ES5_17139 [Dietzia cinnamea P4]
gi|319434928|gb|EFV90229.1| hypothetical protein ES5_17139 [Dietzia cinnamea P4]
Length=337
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/121 (23%), Positives = 59/121 (49%), Gaps = 21/121 (17%)
Query 27 NADKTVEQVEDVLDGLGKTM-------AELNSSLSQLNSTVERLEDGLDHL--------- 70
+A+ VE+++D+LD + +T+ A S++ + +TV R + +D +
Sbjct 45 DAEVVVERIQDLLDEVNRTVRAIDGIVASATSTIDDVRTTVARADQMIDQVAGTVTDAEG 104
Query 71 -----EGTLHSLDDLAKRLIVLVEPVEAIVDRIDYIVSLGETVMSPLSVTEHAVRGVLDR 125
+GT+ S + + +R+ ++ E +V R+D + E V+ + T + GV+ R
Sbjct 105 IVRRVDGTIDSAEGVVRRVDATIDSAEGVVRRVDATIDSAEGVVRRVDATIDSAEGVVRR 164
Query 126 L 126
+
Sbjct 165 V 165
>gi|328469872|gb|EGF40783.1| methyl-accepting chemotaxis protein [Vibrio parahaemolyticus
10329]
Length=553
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/73 (25%), Positives = 44/73 (61%), Gaps = 2/73 (2%)
Query 23 QAALNADKTVEQVEDVLDGLGKTMAELNSSLSQLNSTVERLEDGLDHLEGTLHSLDDLAK 82
++A +AD+ +Q + ++D ++ EL S +S+ ++ + R+E + ++ +L + D+A+
Sbjct 336 ESARHADENAQQAKHIVDSAANSVEELASEVSEASTVIARVESDVQNISSSLEVIQDIAE 395
Query 83 R--LIVLVEPVEA 93
+ L+ L +EA
Sbjct 396 QTNLLALNAAIEA 408
Lambda K H
0.315 0.131 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128858389450
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40