BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1453
Length=421
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840913|ref|NP_335950.1| hypothetical protein MT1500 [Mycoba... 845 0.0
gi|57116867|ref|NP_215969.2| transcriptional activator protein [... 845 0.0
gi|298524960|ref|ZP_07012369.1| transcriptional activator protei... 844 0.0
gi|31792647|ref|NP_855140.1| transcriptional activator protein [... 842 0.0
gi|340626467|ref|YP_004744919.1| putative transcriptional activa... 841 0.0
gi|289757561|ref|ZP_06516939.1| transcriptional activator protei... 773 0.0
gi|289745203|ref|ZP_06504581.1| transcriptional activator protei... 741 0.0
gi|183982271|ref|YP_001850562.1| transcriptional activator prote... 592 4e-167
gi|15609507|ref|NP_216886.1| hypothetical protein Rv2370c [Mycob... 578 6e-163
gi|340626208|ref|YP_004744660.1| hypothetical protein MCAN_12051... 523 2e-146
gi|254364095|ref|ZP_04980141.1| conserved hypothetical protein [... 523 2e-146
gi|15608334|ref|NP_215710.1| hypothetical protein Rv1194c [Mycob... 523 3e-146
gi|118616706|ref|YP_905038.1| transcriptional regulatory protein... 522 4e-146
gi|289744939|ref|ZP_06504317.1| conserved hypothetical protein [... 520 2e-145
gi|183984214|ref|YP_001852505.1| transcriptional regulatory prot... 519 4e-145
gi|15827510|ref|NP_301773.1| hypothetical protein ML1052 [Mycoba... 516 2e-144
gi|699188|gb|AAA62953.1| trx [Mycobacterium leprae] 514 1e-143
gi|289758492|ref|ZP_06517870.1| conserved hypothetical protein [... 508 6e-142
gi|183982113|ref|YP_001850404.1| transcriptional regulator [Myco... 507 1e-141
gi|118618591|ref|YP_906923.1| transcriptional regulator [Mycobac... 504 1e-140
gi|240169039|ref|ZP_04747698.1| transcriptional regulatory prote... 495 6e-138
gi|118617459|ref|YP_905791.1| transcriptional activator protein ... 473 3e-131
gi|240167827|ref|ZP_04746486.1| hypothetical protein MkanA1_0082... 470 3e-130
gi|183981147|ref|YP_001849438.1| hypothetical protein MMAR_1127 ... 461 1e-127
gi|240172052|ref|ZP_04750711.1| transcriptional regulatory prote... 454 1e-125
gi|294633995|ref|ZP_06712551.1| regulatory protein [Streptomyces... 418 1e-114
gi|289443891|ref|ZP_06433635.1| conserved hypothetical protein [... 414 1e-113
gi|29827930|ref|NP_822564.1| hypothetical protein SAV_1389 [Stre... 369 4e-100
gi|288916819|ref|ZP_06411192.1| putative transcriptional regulat... 362 8e-98
gi|296393206|ref|YP_003658090.1| PucR family transcriptional reg... 347 3e-93
gi|296141540|ref|YP_003648783.1| PucR family transcriptional reg... 315 1e-83
gi|284990852|ref|YP_003409406.1| putative PucR family transcript... 311 1e-82
gi|78059959|ref|YP_366534.1| putative regulator of polyketide sy... 300 3e-79
gi|289705749|ref|ZP_06502133.1| conserved hypothetical protein [... 296 4e-78
gi|289570513|ref|ZP_06450740.1| conserved hypothetical protein [... 293 3e-77
gi|26989534|ref|NP_744959.1| hypothetical protein PP_2815 [Pseud... 275 7e-72
gi|254240668|ref|ZP_04933990.1| conserved hypothetical protein [... 266 5e-69
gi|313110892|ref|ZP_07796735.1| hypothetical protein PA39016_002... 262 7e-68
gi|107101671|ref|ZP_01365589.1| hypothetical protein PaerPA_0100... 262 7e-68
gi|218891802|ref|YP_002440669.1| hypothetical protein PLES_30801... 261 1e-67
gi|296140575|ref|YP_003647818.1| PucR family transcriptional reg... 253 5e-65
gi|326381991|ref|ZP_08203684.1| putative transcriptional regulat... 233 5e-59
gi|54023238|ref|YP_117480.1| hypothetical protein nfa12710 [Noca... 219 7e-55
gi|289750013|ref|ZP_06509391.1| transcriptional activator [Mycob... 212 8e-53
gi|304319834|ref|YP_003853477.1| hypothetical protein PB2503_012... 210 3e-52
gi|240170335|ref|ZP_04748994.1| hypothetical protein MkanA1_1356... 210 4e-52
gi|169629742|ref|YP_001703391.1| hypothetical protein MAB_2657c ... 203 4e-50
gi|328886832|emb|CCA60071.1| hypothetical protein SVEN_6785 [Str... 191 3e-46
gi|226359516|ref|YP_002777294.1| CdaR family transcriptional reg... 190 3e-46
gi|111020760|ref|YP_703732.1| hypothetical protein RHA1_ro03774 ... 186 6e-45
>gi|15840913|ref|NP_335950.1| hypothetical protein MT1500 [Mycobacterium tuberculosis CDC1551]
gi|148822672|ref|YP_001287426.1| transcriptional activator protein [Mycobacterium tuberculosis
F11]
gi|253799498|ref|YP_003032499.1| transcriptional activator [Mycobacterium tuberculosis KZN 1435]
13 more sequence titles
Length=432
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH
Sbjct 12 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 71
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF
Sbjct 72 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 131
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG
Sbjct 132 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 191
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA
Sbjct 192 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 251
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE
Sbjct 252 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 311
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA
Sbjct 312 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 371
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPAKKESNGTKM 420
RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREK TSDPPAKKESNGTKM
Sbjct 372 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDPPAKKESNGTKM 431
Query 421 R 421
R
Sbjct 432 R 432
>gi|57116867|ref|NP_215969.2| transcriptional activator protein [Mycobacterium tuberculosis
H37Rv]
gi|148661245|ref|YP_001282768.1| hypothetical protein MRA_1462 [Mycobacterium tuberculosis H37Ra]
gi|308231843|ref|ZP_07413977.2| transcriptional activator [Mycobacterium tuberculosis SUMu001]
9 more sequence titles
Length=421
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/421 (99%), Positives = 421/421 (100%), Gaps = 0/421 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+ALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH
Sbjct 1 MALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF
Sbjct 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG
Sbjct 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA
Sbjct 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE
Sbjct 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA
Sbjct 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPAKKESNGTKM 420
RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPAKKESNGTKM
Sbjct 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPAKKESNGTKM 420
Query 421 R 421
R
Sbjct 421 R 421
>gi|298524960|ref|ZP_07012369.1| transcriptional activator protein [Mycobacterium tuberculosis
94_M4241A]
gi|298494754|gb|EFI30048.1| transcriptional activator protein [Mycobacterium tuberculosis
94_M4241A]
gi|339294429|gb|AEJ46540.1| transcriptional activator protein [Mycobacterium tuberculosis
CCDC5079]
gi|339298067|gb|AEJ50177.1| transcriptional activator protein [Mycobacterium tuberculosis
CCDC5180]
Length=432
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH
Sbjct 12 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 71
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF
Sbjct 72 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 131
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG
Sbjct 132 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 191
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA
Sbjct 192 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 251
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE
Sbjct 252 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 311
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA
Sbjct 312 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 371
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPAKKESNGTKM 420
RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREK TSDPPAKKESNGTKM
Sbjct 372 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDPPAKKESNGTKM 431
Query 421 R 421
R
Sbjct 432 R 432
>gi|31792647|ref|NP_855140.1| transcriptional activator protein [Mycobacterium bovis AF2122/97]
gi|121637383|ref|YP_977606.1| putative transcriptional activator protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224989858|ref|YP_002644545.1| putative transcriptional activator protein [Mycobacterium bovis
BCG str. Tokyo 172]
39 more sequence titles
Length=421
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+ALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH
Sbjct 1 MALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF
Sbjct 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG
Sbjct 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA
Sbjct 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE
Sbjct 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA
Sbjct 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPAKKESNGTKM 420
RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREK TSDPPAKKESNGTKM
Sbjct 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDPPAKKESNGTKM 420
Query 421 R 421
R
Sbjct 421 R 421
>gi|340626467|ref|YP_004744919.1| putative transcriptional activator protein [Mycobacterium canettii
CIPT 140010059]
gi|340004657|emb|CCC43801.1| putative transcriptional activator protein [Mycobacterium canettii
CIPT 140010059]
Length=421
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+ALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH
Sbjct 1 MALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF
Sbjct 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
GLTS+PDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG
Sbjct 121 GLTSNPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA
Sbjct 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE
Sbjct 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA
Sbjct 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPAKKESNGTKM 420
RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREK TSDPPAKKESNGTKM
Sbjct 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDPPAKKESNGTKM 420
Query 421 R 421
R
Sbjct 421 R 421
>gi|289757561|ref|ZP_06516939.1| transcriptional activator protein [Mycobacterium tuberculosis
T85]
gi|289713125|gb|EFD77137.1| transcriptional activator protein [Mycobacterium tuberculosis
T85]
Length=385
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/385 (99%), Positives = 384/385 (99%), Gaps = 0/385 (0%)
Query 37 LAANPSIAADPALATVVKRSNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGL 96
+AANPSIAADPALATVVKRSNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGL
Sbjct 1 MAANPSIAADPALATVVKRSNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGL 60
Query 97 DALALDIYRIGQNVAWRRWTDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQ 156
DALALDIYRIGQNVAWRRWTDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQ
Sbjct 61 DALALDIYRIGQNVAWRRWTDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQ 120
Query 157 LERDKLTRDVPAERRKIVQLLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSH 216
LERDKLTRDVPAERRKIVQLLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSH
Sbjct 121 LERDKLTRDVPAERRKIVQLLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSH 180
Query 217 LDRVADAFGHAGGCPHPLVVVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATA 276
LDRVADAFGHAGGCPHPLVVVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATA
Sbjct 181 LDRVADAFGHAGGCPHPLVVVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATA 240
Query 277 PGIEGFRRSHRDALTTARMIIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLE 336
PGIEGFRRSHRDALTTARMIIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLE
Sbjct 241 PGIEGFRRSHRDALTTARMIIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLE 300
Query 337 SASPALKTTLLTFINQQCNASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVAL 396
SASPALKTTLLTFINQQCNASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVAL
Sbjct 301 SASPALKTTLLTFINQQCNASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVAL 360
Query 397 EAQQWREKPTSDPPAKKESNGTKMR 421
EAQQWREK TSDPPAKKESNGTKMR
Sbjct 361 EAQQWREKQTSDPPAKKESNGTKMR 385
>gi|289745203|ref|ZP_06504581.1| transcriptional activator protein [Mycobacterium tuberculosis
02_1987]
gi|289685731|gb|EFD53219.1| transcriptional activator protein [Mycobacterium tuberculosis
02_1987]
Length=388
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/366 (99%), Positives = 365/366 (99%), Gaps = 0/366 (0%)
Query 56 SNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRW 115
SNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRW
Sbjct 23 SNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRW 82
Query 116 TDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQ 175
TDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQ
Sbjct 83 TDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQ 142
Query 176 LLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLV 235
LLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLV
Sbjct 143 LLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLV 202
Query 236 VVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARM 295
VVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARM
Sbjct 203 VVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARM 262
Query 296 IIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCN 355
IIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCN
Sbjct 263 IIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCN 322
Query 356 ASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPAKKES 415
ASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREK TSDPPAKKES
Sbjct 323 ASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDPPAKKES 382
Query 416 NGTKMR 421
NGTKMR
Sbjct 383 NGTKMR 388
>gi|183982271|ref|YP_001850562.1| transcriptional activator protein [Mycobacterium marinum M]
gi|183175597|gb|ACC40707.1| transcriptional activator protein [Mycobacterium marinum M]
Length=427
Score = 592 bits (1526), Expect = 4e-167, Method: Compositional matrix adjust.
Identities = 283/409 (70%), Positives = 341/409 (84%), Gaps = 0/409 (0%)
Query 4 RETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIH 63
RE SPR+ +LIREAAR+ALNP+Q+WL+EFDRA LAA P IA +P LATV+ R+NRA+L H
Sbjct 4 RELSPRVRDLIREAARVALNPSQQWLEEFDRATLAAAPPIAENPDLATVISRANRANLRH 63
Query 64 FAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLT 123
FAA+NLRNPG PVPANLG EPLRMARDLVR+GLD LALD+YR+GQNVAW+RWTDI FGLT
Sbjct 64 FAASNLRNPGDPVPANLGAEPLRMARDLVRLGLDTLALDVYRVGQNVAWQRWTDIVFGLT 123
Query 124 SDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPI 183
+DP EL ELLDVPFR+A F+DTTLAGI +M+LE +L+R++ AERR+IV+LL++GAPI
Sbjct 124 TDPQELRELLDVPFRSAAAFIDTTLAGIAAQMELEHHELSRNICAERRRIVELLLNGAPI 183
Query 184 SREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATR 243
SR+ AE+RLGYPLDRSHTAA+IW D++ GDH LDR DAF +A GC L +++ A TR
Sbjct 184 SRDSAESRLGYPLDRSHTAAIIWSDRSDGDHRDLDRAVDAFCNAVGCASSLAIMSAATTR 243
Query 244 WVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPH 303
WVWV+D FD I +V+ ++P RIAIG T PG++GFRRSHRDALT ARM+IRL SP
Sbjct 244 WVWVRDVDVFDCSRIRQVMRELPHVRIAIGTTEPGVDGFRRSHRDALTAARMLIRLRSPQ 303
Query 304 RVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLL 363
+VAFF DVEM+ALLTEN +GAD+FI+ TLG+ E ASPAL+ TLLTFI+QQCNASRAARLL
Sbjct 304 QVAFFGDVEMIALLTENPDGADEFIKNTLGDFEEASPALQHTLLTFISQQCNASRAARLL 363
Query 364 FTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPAK 412
+THRNTLM+RLETAQRLLP+PL DTT+ VAVALE QWR K +P A
Sbjct 364 YTHRNTLMHRLETAQRLLPKPLEDTTVRVAVALEVLQWRSKQPGNPAAS 412
>gi|15609507|ref|NP_216886.1| hypothetical protein Rv2370c [Mycobacterium tuberculosis H37Rv]
gi|15841882|ref|NP_336919.1| hypothetical protein MT2439 [Mycobacterium tuberculosis CDC1551]
gi|31793547|ref|NP_856040.1| hypothetical protein Mb2391c [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=437
Score = 578 bits (1490), Expect = 6e-163, Method: Compositional matrix adjust.
Identities = 284/409 (70%), Positives = 333/409 (82%), Gaps = 0/409 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+ L + +PR ELIR+AA++AL+PT EWLDE DRA LAA+PSIAADPALATVV R+NR+H
Sbjct 1 MVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
LIHFA ANLR PG PVPANLGP+PLRMARDLVR GLDA ALD+YR+GQNVAW+RWT+IAF
Sbjct 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
GLT+DP ELHELL +PFR+A+EF+D TLAG+ +MQLE D+LTRDV AE R+IV+L++DG
Sbjct 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APISR+ AEA+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP PL+ VA A
Sbjct 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
ATRWVWV DA D D IH+VL P ARIA+G TA GI+GFRRSHRDAL T RM+ RL
Sbjct 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
S R+AFF D+ M+A+LTEN + A DFI TLG+LESASP L TT+LT+IN+QCNASRAA
Sbjct 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA 360
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDP 409
+L THRNTL+ RLETAQRLLPRPL T I VAVA+ A QWR TSDP
Sbjct 361 HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDP 409
>gi|340626208|ref|YP_004744660.1| hypothetical protein MCAN_12051 [Mycobacterium canettii CIPT
140010059]
gi|340004398|emb|CCC43541.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=421
Score = 523 bits (1347), Expect = 2e-146, Method: Compositional matrix adjust.
Identities = 257/402 (64%), Positives = 315/402 (79%), Gaps = 0/402 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+A ++ SPRI ELIRE ARIALNP+ EW++E DRA +AANP+IA DP LA VV+ +NRA+
Sbjct 1 MAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ WR W IAF
Sbjct 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
LTSDP EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER ++V L++DG
Sbjct 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APIS E AEA+LGYPL+R+HTAA+IW D+ GDHS+LDR AD F HA G PL VVAGA
Sbjct 181 APISPERAEAKLGYPLNRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
A+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T R + RL
Sbjct 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
S RVAFF DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+QCNASRAA
Sbjct 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 402
+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR
Sbjct 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
>gi|254364095|ref|ZP_04980141.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134149609|gb|EBA41654.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
Length=421
Score = 523 bits (1347), Expect = 2e-146, Method: Compositional matrix adjust.
Identities = 257/402 (64%), Positives = 314/402 (79%), Gaps = 0/402 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+A ++ SPRI ELIRE ARIALNP+ EW++E DRA +AANP+IA DP LA VV+ +NRA+
Sbjct 1 MAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ WR W IAF
Sbjct 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRLWMGIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
LTSDP EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER ++V L++DG
Sbjct 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APIS E AEA+LGYPL R+HTAA+IW D+ GDHS+LDR AD F HA G PL VVAGA
Sbjct 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
A+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T R + RL
Sbjct 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
S RVAFF DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+QCNASRAA
Sbjct 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 402
+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR
Sbjct 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
>gi|15608334|ref|NP_215710.1| hypothetical protein Rv1194c [Mycobacterium tuberculosis H37Rv]
gi|15840637|ref|NP_335674.1| hypothetical protein MT1231 [Mycobacterium tuberculosis CDC1551]
gi|31792387|ref|NP_854880.1| hypothetical protein Mb1226c [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=421
Score = 523 bits (1346), Expect = 3e-146, Method: Compositional matrix adjust.
Identities = 257/402 (64%), Positives = 314/402 (79%), Gaps = 0/402 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+A ++ SPRI ELIRE ARIALNP+ EW++E DRA +AANP+IA DP LA VV+ +NRA+
Sbjct 1 MAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ WR W IAF
Sbjct 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
LTSDP EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER ++V L++DG
Sbjct 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APIS E AEA+LGYPL R+HTAA+IW D+ GDHS+LDR AD F HA G PL VVAGA
Sbjct 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
A+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T R + RL
Sbjct 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
S RVAFF DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+QCNASRAA
Sbjct 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 402
+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR
Sbjct 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
>gi|118616706|ref|YP_905038.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118568816|gb|ABL03567.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=421
Score = 522 bits (1345), Expect = 4e-146, Method: Compositional matrix adjust.
Identities = 259/396 (66%), Positives = 312/396 (79%), Gaps = 0/396 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAA 66
S RI ELIRE AR ALN EW++E DR ++ANP+IA DP LA VVKR NRA+L+H+AA
Sbjct 7 SSRIRELIREGARRALNAGPEWIEELDRETVSANPTIANDPVLAKVVKRVNRANLVHWAA 66
Query 67 ANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDP 126
AN+R+PGAPVPANLG EPLRMARDLVR GL+AL LDIYRIGQ +AWR W +IAF LTSDP
Sbjct 67 ANVRHPGAPVPANLGGEPLRMARDLVRRGLEALTLDIYRIGQYIAWRLWINIAFDLTSDP 126
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
ELHELLDV ++ NEF++ TLAGI ++QLE D+LTR A+R ++V L++GAPISRE
Sbjct 127 QELHELLDVSAKSVNEFIEATLAGIAAQVQLEHDELTRGNHADRLEVVGHLLEGAPISRE 186
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
AE RLGY L R+HTAA+IW D GDHS+LDR ADAF HA G L VVA AATRWVW
Sbjct 187 RAETRLGYSLIRAHTAAIIWSDDFDGDHSNLDRAADAFCHAVGSSQDLTVVANAATRWVW 246
Query 247 VKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVA 306
+ +A DID I + + + DARIAIG A GIEGFRRSH +ALTT R + RL+S RVA
Sbjct 247 LAEATNLDIDTIEQAVDNASDARIAIGTKASGIEGFRRSHLEALTTQRTLARLKSDQRVA 306
Query 307 FFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTH 366
FF+DV++VAL+T+N + A++FI TLG LESA+P L+ TLL FIN+QCNASRAA+ L+TH
Sbjct 307 FFSDVQIVALITQNTQAANEFITSTLGELESAAPELQATLLMFINEQCNASRAAKRLYTH 366
Query 367 RNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 402
RNTL+ R+E AQRLLPRPLA T++HVAVALEA QWR
Sbjct 367 RNTLLRRIEAAQRLLPRPLAHTSVHVAVALEALQWR 402
>gi|289744939|ref|ZP_06504317.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289685467|gb|EFD52955.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=421
Score = 520 bits (1338), Expect = 2e-145, Method: Compositional matrix adjust.
Identities = 256/402 (64%), Positives = 313/402 (78%), Gaps = 0/402 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+A ++ SPRI ELIRE ARIALNP+ EW++E DRA +AANP+IA DP LA VV+ +NRA+
Sbjct 1 MAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ WR W IAF
Sbjct 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
LTSDP EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER ++V L++DG
Sbjct 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APIS E AEA+LGYPL R+HTAA+IW D+ GDHS+LDR AD F HA G PL VVAGA
Sbjct 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
A+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T R + RL
Sbjct 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
S RVA F DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+QCNASRAA
Sbjct 301 STQRVASFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 402
+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR
Sbjct 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
>gi|183984214|ref|YP_001852505.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183177540|gb|ACC42650.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=421
Score = 519 bits (1336), Expect = 4e-145, Method: Compositional matrix adjust.
Identities = 258/396 (66%), Positives = 311/396 (79%), Gaps = 0/396 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAA 66
S RI ELIRE AR ALN EW++E DR ++ANP+IA DP LA VVKR+NRA+L+H+AA
Sbjct 7 SSRIRELIREGARRALNAGPEWIEELDRETVSANPTIANDPVLAKVVKRANRANLVHWAA 66
Query 67 ANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDP 126
AN+R+PGAPVPANLG EPLRMARDLVR GL+ L LDIYRIGQ +AWR W +IAF LTSDP
Sbjct 67 ANVRHPGAPVPANLGGEPLRMARDLVRRGLETLTLDIYRIGQYIAWRLWINIAFDLTSDP 126
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
EL ELLDV ++ NEF++ TLAGI ++QLE D+LTR A+R ++V L++GAPISRE
Sbjct 127 QELRELLDVSAKSVNEFIEATLAGIAAQVQLEHDELTRGNHADRLEVVGHLLEGAPISRE 186
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
AE RLGY L R+HTAA+IW D GDHS+LDR ADAF HA G L VVA AATRWVW
Sbjct 187 RAETRLGYSLIRAHTAAIIWSDDFDGDHSNLDRAADAFCHAVGSSQDLTVVANAATRWVW 246
Query 247 VKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVA 306
+ +A DID I + + + DARIAIG A GIEGFRRSH +ALTT R + RL+S RVA
Sbjct 247 LAEATNLDIDTIEQAVDNASDARIAIGTKASGIEGFRRSHLEALTTQRTLARLKSDQRVA 306
Query 307 FFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTH 366
FF+DV++VAL+T+N + AD+FI TLG LESA+P L+ TLL FIN+QCNASRAA+ L+TH
Sbjct 307 FFSDVQIVALITQNPQAADEFITSTLGELESAAPELQATLLMFINEQCNASRAAKRLYTH 366
Query 367 RNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 402
RNTL+ R+E AQRLLPRPLA T++HVAVALEA QWR
Sbjct 367 RNTLLRRIEAAQRLLPRPLAHTSVHVAVALEALQWR 402
>gi|15827510|ref|NP_301773.1| hypothetical protein ML1052 [Mycobacterium leprae TN]
gi|221229987|ref|YP_002503403.1| hypothetical protein MLBr_01052 [Mycobacterium leprae Br4923]
gi|13093060|emb|CAC31433.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933094|emb|CAR71147.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=421
Score = 516 bits (1330), Expect = 2e-144, Method: Compositional matrix adjust.
Identities = 252/409 (62%), Positives = 317/409 (78%), Gaps = 2/409 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAA 66
SPR+ ELIRE ARIALNPTQEW+D+ DRA AANP+IA DP LA VV+R++RAHL+H+A
Sbjct 7 SPRVRELIREGARIALNPTQEWIDQLDRATFAANPAIANDPVLAKVVRRASRAHLVHWAT 66
Query 67 ANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDP 126
ANLR+PGAPVPA+LGPEPL MARDLVR G D LALDIYR+GQ AWRRW +IAF LTSDP
Sbjct 67 ANLRDPGAPVPAHLGPEPLTMARDLVRRGRDVLALDIYRVGQYTAWRRWMEIAFTLTSDP 126
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
EL E+L+V ++ NE+V TL I T MQLERD+LTR AER ++V L+++GAP+++E
Sbjct 127 QELREILNVSAQSINEYVAATLEAIATHMQLERDELTRSTHAERLEVVDLILEGAPVTQE 186
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
AEARLGY L +HTAAVIW D GDH +LD+ A+AF H L+VVA AATRWVW
Sbjct 187 RAEARLGYRLGLTHTAAVIWSDDLDGDHGYLDQAAEAFSHVVESTQQLIVVASAATRWVW 246
Query 247 VKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVA 306
+ DA D+ + + L ++ AR+AIG ++ GIEGFRRSH +ALT R + RL+S +VA
Sbjct 247 LADALALDVPEVQKALLNLSKARVAIGTSSAGIEGFRRSHLEALTAQRTLARLKSHQQVA 306
Query 307 FFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTH 366
FF DV++V+L+T+N E A +FI TLG+ ESASPAL+ TLLTFIN+QCNASRAA+ LFTH
Sbjct 307 FFADVQLVSLITQNPEDAKEFITSTLGDFESASPALQQTLLTFINEQCNASRAAKRLFTH 366
Query 367 RNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR--EKPTSDPPAKK 413
RNTL+ R+E+A++LLPRPL T++H+AVALEA QWR + TS P A +
Sbjct 367 RNTLLRRIESAEKLLPRPLDHTSVHIAVALEALQWRGDQTNTSGPRAGR 415
>gi|699188|gb|AAA62953.1| trx [Mycobacterium leprae]
Length=517
Score = 514 bits (1323), Expect = 1e-143, Method: Compositional matrix adjust.
Identities = 253/415 (61%), Positives = 320/415 (78%), Gaps = 2/415 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+A + SPR+ ELIRE ARIALNPTQEW+D+ DRA AANP+IA DP LA VV+R++RAH
Sbjct 97 MARQHPSPRVRELIREGARIALNPTQEWIDQLDRATFAANPAIANDPVLAKVVRRASRAH 156
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
L+H+A ANLR+PGAPVPA+LGPEPL MARDLVR G D LALDIYR+GQ AWRRW +IAF
Sbjct 157 LVHWATANLRDPGAPVPAHLGPEPLTMARDLVRRGRDVLALDIYRVGQYTAWRRWMEIAF 216
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
LTSDP EL E+L+V ++ NE+V TL I T MQLERD+LTR AER ++V L+++G
Sbjct 217 TLTSDPQELREILNVSAQSINEYVAATLEAIATHMQLERDELTRSTHAERLEVVDLILEG 276
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
AP+++E AEARLGY L +HTAAVIW D GDH +LD+ A+AF H L+VVA A
Sbjct 277 APVTQERAEARLGYRLGLTHTAAVIWSDDLDGDHGYLDQAAEAFSHVVESTQQLIVVASA 336
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
ATRWVW+ DA D+ + + L ++ AR+AIG ++ GIEGFRRSH +ALT R + RL+
Sbjct 337 ATRWVWLADALALDVPEVQKALLNLSKARVAIGTSSAGIEGFRRSHLEALTAQRTLARLK 396
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
S +VAFF DV++V+L+T+N E A +FI TLG+ ESASPAL+ TLLTFIN+QCNASRAA
Sbjct 397 SHQQVAFFADVQLVSLITQNPEDAKEFITSTLGDFESASPALQQTLLTFINEQCNASRAA 456
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR--EKPTSDPPAKK 413
+ LFTHRNTL+ R+E+A++LLPRPL T++H+AVALEA QWR + TS P A +
Sbjct 457 KRLFTHRNTLLRRIESAEKLLPRPLDHTSVHIAVALEALQWRGDQTNTSGPRAGR 511
>gi|289758492|ref|ZP_06517870.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714056|gb|EFD78068.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=504
Score = 508 bits (1309), Expect = 6e-142, Method: Compositional matrix adjust.
Identities = 248/365 (68%), Positives = 295/365 (81%), Gaps = 0/365 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+ L + +PR ELIR+AA++AL+PT EWLDE DRA LAA+PSIAADPALATVV R+NR+H
Sbjct 1 MVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
LIHFA ANLR PG PVPANLGP+PLRMARDLVR GLDA ALD+YR+GQNVAW+RWT+IAF
Sbjct 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
GLT+DP ELHELL +PFR+A+EF+D TLAG+ +MQLE D+LTRDV AE R+IV+L++DG
Sbjct 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APISR+ AEA+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP PL+ VA A
Sbjct 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
ATRWVWV DA D D IH+VL P ARIA+G TA GI+GFRRSHRDAL T RM+ RL
Sbjct 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
S R+AFF D+ M+A+LTEN + A DFI TLG+LESASP L TT+LT+IN+QCNA
Sbjct 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNAFPRP 360
Query 361 RLLFT 365
R +T
Sbjct 361 RTYYT 365
>gi|183982113|ref|YP_001850404.1| transcriptional regulator [Mycobacterium marinum M]
gi|183175439|gb|ACC40549.1| transcriptional regulator [Mycobacterium marinum M]
Length=405
Score = 507 bits (1306), Expect = 1e-141, Method: Compositional matrix adjust.
Identities = 244/399 (62%), Positives = 304/399 (77%), Gaps = 0/399 (0%)
Query 10 IHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAAANL 69
+ ELIR ARIALNPTQ+WLDE DR LAANP+++ DPAL ++ R+NRA+LIHFA A L
Sbjct 1 MRELIRHTARIALNPTQQWLDELDRTTLAANPALSDDPALVEIISRANRANLIHFAVAIL 60
Query 70 RNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDPDEL 129
R+PG PVPAN GPEPLRMA++L+ GL+ALA DIYRI NVAW RWTDIAFGLTS+P EL
Sbjct 61 RDPGGPVPANFGPEPLRMAQELLNRGLEALAADIYRIAHNVAWERWTDIAFGLTSNPQEL 120
Query 130 HELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISREHAE 189
+LLDV FR++N+F+D T+AGI ++ LE D LTR+V A+RRK+V+ ++ GAP++RE AE
Sbjct 121 RDLLDVAFRSSNDFIDATIAGIPAQLPLEYDALTREVSAQRRKVVEQILGGAPVNRERAE 180
Query 190 ARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVWVKD 249
A+LGY LDR+HTAA++W D+ GDH LD+ ADAF A GC PL+VV +ATRWVWV D
Sbjct 181 AQLGYLLDRAHTAAIVWSDEPDGDHGQLDQAADAFCTALGCRAPLIVVTNSATRWVWVND 240
Query 250 APGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVAFFT 309
A D I +VL D P R+A+G T GIEGFRRSHRDA TT RM+ RL +P R A F
Sbjct 241 AATPVGDRIQQVLTDAPTVRLAVGNTRRGIEGFRRSHRDAQTTQRMLTRLGAPQRTAHFA 300
Query 310 DVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTHRNT 369
D +MV LLT++ EG D+FI+ TLG +SASP L TLLT+INQQCNA+R A+ L+ HRNT
Sbjct 301 DTQMVELLTQDLEGVDEFIECTLGEFQSASPVLHATLLTYINQQCNAARTAKALYIHRNT 360
Query 370 LMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSD 408
L++RLETA RLLP+P+ +H+AVALE QWR D
Sbjct 361 LVHRLETAHRLLPQPVEANIVHIAVALEVLQWRSDRDGD 399
>gi|118618591|ref|YP_906923.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
gi|118570701|gb|ABL05452.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
Length=417
Score = 504 bits (1297), Expect = 1e-140, Method: Compositional matrix adjust.
Identities = 243/402 (61%), Positives = 303/402 (76%), Gaps = 0/402 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAA 66
SPR+ ELIR ARIALNPTQ+WLDE DR LAANP+++ DPAL ++ R+NRA+LIHFA
Sbjct 10 SPRMRELIRHTARIALNPTQQWLDELDRTTLAANPALSDDPALVEIISRANRANLIHFAV 69
Query 67 ANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDP 126
A LR+PG PVPAN GPEPLRMA++L+ GL+ALA DIYRI NVAW RWTDIAFGLTS+P
Sbjct 70 AILRDPGGPVPANFGPEPLRMAQELLNRGLEALAADIYRIAHNVAWERWTDIAFGLTSNP 129
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
EL +LLDV FR++N+F+D T+AGI ++ LE D LTR+V A+RRK+V+ ++ GAP++RE
Sbjct 130 QELRDLLDVAFRSSNDFIDATIAGIPAQLPLEYDALTREVSAQRRKVVEQILGGAPVNRE 189
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
AEA+LGY LDR+HTAA++W D+ GDH LD+ ADAF A GC PL+VV +ATRWVW
Sbjct 190 RAEAQLGYLLDRAHTAAIVWSDEPDGDHGQLDQAADAFCTALGCRAPLIVVTNSATRWVW 249
Query 247 VKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVA 306
V DA D I +VL P R+ +G T GIEGFRRSHRDA TT RM+ RL +P R A
Sbjct 250 VNDAATPVGDRIQQVLTYAPTVRLVVGNTRRGIEGFRRSHRDAQTTQRMLTRLGAPQRTA 309
Query 307 FFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTH 366
F D +MV LLT++ EG D+FI+ TLG +SASP L LLT+INQQCNA+R A+ L+ H
Sbjct 310 HFADTQMVELLTQDLEGVDEFIECTLGEFQSASPVLHAILLTYINQQCNAARTAKALYIH 369
Query 367 RNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSD 408
RNTL++RLETA RLLP+P+ + +AVALE QWR D
Sbjct 370 RNTLVHRLETAHRLLPQPVEANIVRIAVALEVLQWRSDRDDD 411
>gi|240169039|ref|ZP_04747698.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=421
Score = 495 bits (1274), Expect = 6e-138, Method: Compositional matrix adjust.
Identities = 254/405 (63%), Positives = 311/405 (77%), Gaps = 0/405 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAA 66
SPRI ELIRE ARIALNP EW+ E DRA +AANP+IA DP LA VV+++NRA+L+H+AA
Sbjct 7 SPRIRELIREGARIALNPGPEWITELDRATVAANPAIADDPVLAKVVQKANRANLVHWAA 66
Query 67 ANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDP 126
AN+R+PGAPVP NLG EPLRMARDLVR GLD LA D+YR G+ +AWR W IAF LT+DP
Sbjct 67 ANMRDPGAPVPPNLGAEPLRMARDLVRRGLDTLAHDVYRTGEYIAWRLWLHIAFDLTADP 126
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
EL ELLDV R+ N+F++ TLAGI ++QLE +L R AER ++V LL++GAPISRE
Sbjct 127 AELRELLDVSARSVNDFIEATLAGIAAQIQLEHHELNRGSHAERLEVVGLLLEGAPISRE 186
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
AEARLGYPL+R+HTAA++W D+ G+H LDR ADAF HA G L VVA AATRWVW
Sbjct 187 RAEARLGYPLNRAHTAAIVWSDEIDGNHGDLDRAADAFSHAVGYAQQLTVVASAATRWVW 246
Query 247 VKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVA 306
+ DA G DI + L ARIAIG TA G GF+RSH +ALTT R ++RL+S RVA
Sbjct 247 LADAAGLDIAAVERALDSTAGARIAIGTTATGTGGFQRSHLEALTTQRTLMRLQSGQRVA 306
Query 307 FFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTH 366
FF+DV+MVAL+T+N + A +FI TLG+LES SP L+TTLLTFIN+QCNASRAA+ L+TH
Sbjct 307 FFSDVQMVALVTQNPQAASEFISSTLGDLESGSPELQTTLLTFINEQCNASRAAKRLYTH 366
Query 367 RNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDPPA 411
RNTL+ R+E+AQRLLPRPL T++ VAVALEA +WR + P
Sbjct 367 RNTLLRRIESAQRLLPRPLGRTSVEVAVALEALRWRGSDIGNLPG 411
>gi|118617459|ref|YP_905791.1| transcriptional activator protein [Mycobacterium ulcerans Agy99]
gi|118569569|gb|ABL04320.1| transcriptional activator protein [Mycobacterium ulcerans Agy99]
Length=336
Score = 473 bits (1217), Expect = 3e-131, Method: Compositional matrix adjust.
Identities = 224/333 (68%), Positives = 274/333 (83%), Gaps = 0/333 (0%)
Query 4 RETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIH 63
RE SPR+ +LIREAAR+ALNP+Q+WL+EFDRA LA P IA +P LATV+ R+NRA+L H
Sbjct 4 RELSPRVRDLIREAARVALNPSQQWLEEFDRATLATAPPIAENPDLATVISRANRANLRH 63
Query 64 FAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLT 123
FAA+NLRNPG PVPANLG EPLRMARDLVR+GLD LALD+YR+GQNVAW+RWTDI FGLT
Sbjct 64 FAASNLRNPGDPVPANLGAEPLRMARDLVRLGLDTLALDVYRVGQNVAWQRWTDIVFGLT 123
Query 124 SDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPI 183
+DP EL ELLDVPFR+A F+DTTLAGI +M+LE +L+R++ AERR+IV+LL++GAPI
Sbjct 124 TDPQELRELLDVPFRSAVAFIDTTLAGIAAQMELEHHELSRNICAERRRIVELLLNGAPI 183
Query 184 SREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATR 243
SR+ AE+RLGYPLDRSHTAA+IW D+ GDH LDR DAF +A GC L +++ A TR
Sbjct 184 SRDSAESRLGYPLDRSHTAAIIWSDRPNGDHRDLDRAVDAFCNAVGCASSLAIMSAATTR 243
Query 244 WVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPH 303
WVWV+D FD I +V+ ++P RIAIG T PG++GFRRS RDALT ARM+IRL SP
Sbjct 244 WVWVRDVDVFDCSHIRQVMRELPHVRIAIGTTEPGVDGFRRSRRDALTAARMLIRLRSPQ 303
Query 304 RVAFFTDVEMVALLTENAEGADDFIQRTLGNLE 336
+VAFF DVEM+ALLTEN +GAD+FI+ TLG+ E
Sbjct 304 QVAFFGDVEMIALLTENPDGADEFIKNTLGDFE 336
>gi|240167827|ref|ZP_04746486.1| hypothetical protein MkanA1_00825 [Mycobacterium kansasii ATCC
12478]
Length=394
Score = 470 bits (1209), Expect = 3e-130, Method: Compositional matrix adjust.
Identities = 229/398 (58%), Positives = 290/398 (73%), Gaps = 4/398 (1%)
Query 10 IHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAAANL 69
+ ELIR+ ARI LN EW DE+DR +AANPS+A DP LA +RS R+ L+H+AAAN+
Sbjct 1 MCELIRQGARIVLNAPPEWFDEYDRQTMAANPSVADDPVLAAAARRSIRSSLMHWAAANV 60
Query 70 RNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDPDEL 129
NPGAPVP N+GPEPL +ARD+ R GL+ +R V WR W DI F L SDPDEL
Sbjct 61 SNPGAPVPPNVGPEPLSIARDMARRGLEPFT---FRPALTVGWRLWMDIGFKLASDPDEL 117
Query 130 HELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISREHAE 189
ELLDV FR+ + F+D T AGI ++Q ERD+L R AERR++ L++DGAPISR+ AE
Sbjct 118 RELLDVSFRSISNFIDATAAGIAAQVQQERDELARGTHAERREVTALILDGAPISRQRAE 177
Query 190 ARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVWVKD 249
ARLGY L+R+H AVIW D+ GD S LDRVADAFG A G PL V+A AATRWVWV +
Sbjct 178 ARLGYALNRAHIGAVIWSDEPDGDLSQLDRVADAFGDAAGFARPLTVIASAATRWVWVPE 237
Query 250 APGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVAFFT 309
+ D++L+ + P ARIAIG A GIEGFRRSH +ALTT RM+ L+S RVAFF
Sbjct 238 S-ALDVELVRRAVEGTPGARIAIGTIAKGIEGFRRSHLEALTTQRMVAGLQSRQRVAFFA 296
Query 310 DVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTHRNT 369
DV+++AL+T+N E A++FI+ TLG+ ESA P L T+LT+IN+QC+ R +LL+THRNT
Sbjct 297 DVQLIALITQNREAAEEFIKNTLGDFESAGPELHKTVLTYINEQCSVGRTTKLLYTHRNT 356
Query 370 LMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTS 407
L+ RLE A++LLPRPL +++HVAVALEA QWR KP +
Sbjct 357 LLRRLERAEQLLPRPLEHSSVHVAVALEALQWRGKPAN 394
>gi|183981147|ref|YP_001849438.1| hypothetical protein MMAR_1127 [Mycobacterium marinum M]
gi|183174473|gb|ACC39583.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=406
Score = 461 bits (1186), Expect = 1e-127, Method: Compositional matrix adjust.
Identities = 232/401 (58%), Positives = 297/401 (75%), Gaps = 5/401 (1%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAA 66
SPR+ ELIR+ A+ L+ +Q+WLDE+DR +AANP+IA DP LA +RS R+ LIH+AA
Sbjct 7 SPRVGELIRQGAKAVLDGSQQWLDEYDRVTMAANPAIADDPVLAEATRRSIRSSLIHWAA 66
Query 67 ANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDP 126
AN+ NPGAPV NLGPEPL +ARD+VR GLD +RI Q V WR W +AFGLTSDP
Sbjct 67 ANVSNPGAPVAPNLGPEPLSIARDMVRRGLDPFT---FRIAQTVGWRLWMGVAFGLTSDP 123
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
DEL EL +V +R+ +EFV+ T AGI +MQ ERD+L R AERR++ L++DGAPISR+
Sbjct 124 DELRELFEVTYRSISEFVEATSAGIAAQMQRERDELARGTHAERREVTALILDGAPISRQ 183
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
AEARLGY L+R+HTAAVIW D+ GD + LDRV DAFG A PL V+AGAATRWVW
Sbjct 184 RAEARLGYALNRTHTAAVIWSDEPDGDLNRLDRVVDAFGRAADFARPLTVIAGAATRWVW 243
Query 247 VKDAPG--FDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHR 304
V +A D++ + + + D+P ARIAIGA A GIEGFRRSH +ALTT RM+ L S R
Sbjct 244 VANAANATLDVEQVEQAVRDVPGARIAIGAAATGIEGFRRSHLEALTTQRMVAGLNSRQR 303
Query 305 VAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLF 364
VA F D++++AL+ +N E A+DFI+ TLG+ ESA L T+LTF+N+QC+ R ++L+
Sbjct 304 VALFADIQLIALIAQNPEAANDFIKNTLGDFESAGAELHKTVLTFVNEQCSIGRTTKVLY 363
Query 365 THRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKP 405
THRNTL+ RL+ AQ+LLPRPL +++HVAVALEA QWR P
Sbjct 364 THRNTLLRRLDRAQQLLPRPLDHSSVHVAVALEALQWRGNP 404
>gi|240172052|ref|ZP_04750711.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=423
Score = 454 bits (1167), Expect = 1e-125, Method: Compositional matrix adjust.
Identities = 235/401 (59%), Positives = 297/401 (75%), Gaps = 0/401 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAA 66
S R ELIR ARIALNP QEWLD D+A L N IA DP LA V+R++RA+L+H+AA
Sbjct 21 SARTRELIRAGARIALNPNQEWLDRLDKATLGKNAVIAEDPVLAAAVRRASRANLLHWAA 80
Query 67 ANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDP 126
AN+R+PGAPV ANLGPEPL +ARDLVR GLD+ L+IYR+GQ+VAWR W +I FGLT+DP
Sbjct 81 ANVRDPGAPVAANLGPEPLALARDLVRRGLDSTTLEIYRVGQDVAWRHWIEIVFGLTADP 140
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
DEL E+L V + ++F+ TLAGI +++LE ++L AERR+IV+L++DGA I +E
Sbjct 141 DELREVLVVSSLSISDFISATLAGIAAQLKLELNELACGTHAERREIVELILDGAAIGQE 200
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
AEARLGY LD+ HTAA++W D +GDH LD+ ADA +A G L V A AATRW+W
Sbjct 201 RAEARLGYSLDQPHTAAILWSDDFEGDHIFLDKAADAVSYALGSTRALTVTATAATRWIW 260
Query 247 VKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVA 306
V DA D+D I + L + P ARIAIG A GIEGFRRSH DAL T RM+ RL+SP R+A
Sbjct 261 VPDAVDLDVDTIEKALTNCPGARIAIGPNASGIEGFRRSHLDALATQRMMTRLQSPRRIA 320
Query 307 FFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTH 366
F D+++V L+T++A A+DFI TLG+ SASP L+ TLLT+I QQCN SRAA+LL++H
Sbjct 321 LFADIQLVNLITQDASAAEDFISSTLGDFASASPELRATLLTYIRQQCNVSRAAKLLYSH 380
Query 367 RNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTS 407
RNTL+ RLE A R+LPRPL + +HVAVALEA +W TS
Sbjct 381 RNTLLRRLEAAARMLPRPLPQSYVHVAVALEALEWYGNHTS 421
>gi|294633995|ref|ZP_06712551.1| regulatory protein [Streptomyces sp. e14]
gi|292829991|gb|EFF88344.1| regulatory protein [Streptomyces sp. e14]
Length=425
Score = 418 bits (1074), Expect = 1e-114, Method: Compositional matrix adjust.
Identities = 228/407 (57%), Positives = 282/407 (70%), Gaps = 4/407 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPS--IAADPALATVVKRSNR 58
V+ + SPR+ ELIR A IAL+P EWLDE D A L IA+DP LA +R+NR
Sbjct 21 VSWKTPSPRVRELIRRGAEIALHPPDEWLDELDAATLTGETKRQIASDPVLAAGTRRANR 80
Query 59 AHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDI 118
++L+ +AAAN+R+PG PVPAN PL ARD+VR GLD ALD YR G++VA R WT I
Sbjct 81 SNLLFWAAANVRDPGEPVPANDTETPLATARDIVRRGLDESALDAYRAGESVALRLWTQI 140
Query 119 AFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLI 178
A LTSDP EL ELLDV R+ + FVD TL+ I T M+ ERD+LTR AERR+ V LL+
Sbjct 141 ACSLTSDPGELRELLDVSLRSISAFVDDTLSAIATRMRAERDELTRGTHAERRETVSLLL 200
Query 179 DGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVA 238
+GAPI+RE AE+RLGY L +HTAA++W D A D LDR ADA A G PL V+A
Sbjct 201 EGAPITRERAESRLGYRLGATHTAAIVWTDAADPDLGRLDRAADALAEAAGHTRPLSVLA 260
Query 239 GAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIR 298
GAATRWVWV P D + L +PD RIA+G+TAPG++GFRRSH DALTT +M+ R
Sbjct 261 GAATRWVWVHGRP--DTGQLRTALDRLPDVRIAVGSTAPGLDGFRRSHLDALTTQQMLAR 318
Query 299 LESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASR 358
L SP R+A ++E+VALLT + E AD F+ RTLG+LE+A P + TL FI +QCNA+R
Sbjct 319 LTSPSRLASHHEIELVALLTSDPESADRFVTRTLGDLETAPPEVAETLRVFIAEQCNATR 378
Query 359 AARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKP 405
AA LFTHRNTL+ RL A RLLPRPLA+ + V ALE +WR +P
Sbjct 379 AAARLFTHRNTLLRRLARADRLLPRPLAEHPVEVGAALEILRWRGRP 425
>gi|289443891|ref|ZP_06433635.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289416810|gb|EFD14050.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=311
Score = 414 bits (1065), Expect = 1e-113, Method: Compositional matrix adjust.
Identities = 201/286 (71%), Positives = 237/286 (83%), Gaps = 0/286 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
+ L + +PR ELIR+AA++AL+PT EWLDE DRA LAA+PSIAADPALATVV R+NR+H
Sbjct 1 MVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
LIHFA ANLR PG PVPANLGP+PLRMARDLVR GLDA ALD+YR+GQNVAW+RWT+IAF
Sbjct 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
GLT+DP ELHELL +PFR+A+EF+D TLAG+ +MQLE D+LTRDV AE R+IV+L++DG
Sbjct 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
APISR+ AEA+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP PL+ VA A
Sbjct 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSH 286
ATRWVWV DA D D IH+VL P ARIA+G TA GI+GFRRSH
Sbjct 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSH 286
>gi|29827930|ref|NP_822564.1| hypothetical protein SAV_1389 [Streptomyces avermitilis MA-4680]
gi|29605031|dbj|BAC69099.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=425
Score = 369 bits (948), Expect = 4e-100, Method: Compositional matrix adjust.
Identities = 202/398 (51%), Positives = 268/398 (68%), Gaps = 2/398 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAAN--PSIAADPALATVVKRSNRAHLIHF 64
S RI ELI A +A +EWL E + A L+A ++A DP L ++R++RA+++H+
Sbjct 25 SDRIRELIGRGAAVAARAPEEWLREIEDATLSAEYLQALADDPDLTAQIRRTSRANVLHW 84
Query 65 AAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTS 124
A N+R+PGAPVPAN+GPE L AR+LVR GL+ AL YR GQN AW RW IAF LTS
Sbjct 85 ATWNVRSPGAPVPANVGPEALATARELVRRGLNDSALQSYRSGQNAAWLRWMSIAFELTS 144
Query 125 DPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPIS 184
DP EL ELLDV R+ + FVD T+A ++ ++Q ERD+LTR AERR+ V LL++GAPI
Sbjct 145 DPAELRELLDVSTRSISAFVDATIAAVSAQIQAERDELTRGTNAERREAVTLLLNGAPIH 204
Query 185 REHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRW 244
+ A ARLGY ++++HTAA++W D A+ D L+R ADA A G L V AGAA W
Sbjct 205 PDRASARLGYRVEQTHTAAIVWSDAAESDLGDLERAADALAKAAGVSRFLSVTAGAAMLW 264
Query 245 VWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHR 304
VW+ A + + L P AR A+G+T G+EGFRRSH DA+TT RM+ RL +
Sbjct 265 VWLPSAALPATNRLERHLDSHPTARAALGSTGHGVEGFRRSHLDAMTTQRMMARLHTVRS 324
Query 305 VAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLF 364
VA F VE+VAL+T + AD F++RTLG L + +P L+ + +I+++CNA+RAA LF
Sbjct 325 VARFETVEIVALVTREPQQADQFVRRTLGGLATGAPELREAVAAYIHEECNATRAAARLF 384
Query 365 THRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 402
THRNTL+ RLE AQRLLP PLA T+ +AVAL+ WR
Sbjct 385 THRNTLLRRLERAQRLLPHPLAGNTVRIAVALDVLHWR 422
>gi|288916819|ref|ZP_06411192.1| putative transcriptional regulator, PucR family [Frankia sp.
EUN1f]
gi|288351704|gb|EFC85908.1| putative transcriptional regulator, PucR family [Frankia sp.
EUN1f]
Length=410
Score = 362 bits (929), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 207/397 (53%), Positives = 260/397 (66%), Gaps = 4/397 (1%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILA--ANPSIAADPALATVVKRSNRAHLIHF 64
S RI EL+R A + L+P +WLDE D A LA A +A DP LA ++RSNRA+L ++
Sbjct 7 SSRIRELLRRGAELVLHPNPDWLDELDAATLAGPARQQVAEDPVLAAAIRRSNRANLRYW 66
Query 65 AAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTS 124
AAAN+R PG VPA+LG PL +ARDLVR GLD L YR GQ+VA R W +I F LTS
Sbjct 67 AAANIRAPGERVPADLGDVPLAVARDLVRRGLDDAMLGAYRSGQSVALRYWIEIVFTLTS 126
Query 125 DPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPIS 184
DP+EL LLDV R+ +++ T+ I +M ER LT AERR+ V LL+DGAP+S
Sbjct 127 DPEELRALLDVSCRSIATYIEDTVDAIAAQMDRERADLTHGTHAERREAVTLLLDGAPLS 186
Query 185 REHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRW 244
+ A+ RLGY L+ +H AAVIW D D + LDR AD F A G P PL V+A AATRW
Sbjct 187 PQRAQQRLGYRLEGAHWAAVIWSDDPDIDLAALDRAADLFAVAAGDPRPLTVLASAATRW 246
Query 245 VWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHR 304
VWV P D+ +H +IP ARIAIG ++GFRRSH DALT RM+ RL +P +
Sbjct 247 VWVHGEP--DLARLHATAAEIPAARIAIGRRRVDLDGFRRSHHDALTVQRMLARLGAPRQ 304
Query 305 VAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLF 364
+A + DVE+VALLT + E AD F+ LG+L +A P L+ + TF+ CNA+ AA L+
Sbjct 305 IATYADVELVALLTTDRERADQFVAGALGDLATAPPELREAVRTFVAAGCNATAAAGRLY 364
Query 365 THRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQW 401
THRNTL+ RL A+RLLP PLAD I VA ALE Q W
Sbjct 365 THRNTLLRRLARAERLLPVPLADNLIPVAAALEVQHW 401
>gi|296393206|ref|YP_003658090.1| PucR family transcriptional regulator [Segniliparus rotundus
DSM 44985]
gi|296180353|gb|ADG97259.1| putative transcriptional regulator, PucR family [Segniliparus
rotundus DSM 44985]
Length=410
Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 187/403 (47%), Positives = 250/403 (63%), Gaps = 3/403 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAANP--SIAADPALATVVKRSNRAHLIHF 64
S RI EL+R A IAL P W++E A L ++A DP LA V+R+N A+ +H+
Sbjct 9 SERIQELMRRGATIALTPQAHWIEELHTATLGGQRMRAVADDPVLAEAVRRTNLANWLHW 68
Query 65 AAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTS 124
A++N PG VP NL P L +RD+VR GLD ALD YR GQ+VAWRRW DI FGLTS
Sbjct 69 ASSNAARPGERVPPNLSPVVLETSRDMVRRGLDQTALDTYRTGQSVAWRRWMDICFGLTS 128
Query 125 DPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPIS 184
DP ELHELLD+ R+ F+D T+ + + ERD+L R A+R V L+++GAPI
Sbjct 129 DPRELHELLDLSERSIRTFLDDTIDATSARIAEERDQLVRGSHADRLAAVSLILEGAPIP 188
Query 185 REHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRW 244
R AE +LGY L H AAV+WG A S L+ VA+AF G L V+A +AT W
Sbjct 189 RARAEEQLGYQLTGPHVAAVVWG-SASTPASRLETVAEAFTRDSGAARRLTVLASSATLW 247
Query 245 VWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHR 304
+W+ A + + D+PD + IG I+GFRRSH DA+ T RM+ RL SPH+
Sbjct 248 LWLPVAAAPACAHVQAHIADVPDVWLGIGRPGRDIDGFRRSHLDAIATQRMLTRLTSPHQ 307
Query 305 VAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLF 364
VA + D+ +VALL+ + AD+F++ LG L +A P ++ T+LT+I +QCN SRAA L+
Sbjct 308 VAHYDDIALVALLSSDPARADEFVRDALGGLLAAEPDIRDTVLTYIREQCNTSRAAERLY 367
Query 365 THRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTS 407
THRNT++ RL A LLP PL + VA ALE +WR + T+
Sbjct 368 THRNTVIRRLARADELLPHPLPRNIVAVAAALEIVRWRGQSTA 410
>gi|296141540|ref|YP_003648783.1| PucR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296029674|gb|ADG80444.1| putative transcriptional regulator, PucR family [Tsukamurella
paurometabola DSM 20162]
Length=405
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 182/403 (46%), Positives = 249/403 (62%), Gaps = 13/403 (3%)
Query 5 ETSPRIHELIREAARIALNPTQEWLDEFDRAILAAN--PSIAADPALATVVKRSNRAHLI 62
E S ++ +LIR A IA NP +EW+ E A LA IAADP LA +V++SN A ++
Sbjct 7 EPSEQVKDLIRRGAEIASNPPKEWVAELHDATLAGAIMQGIAADPTLAELVRQSNMAAML 66
Query 63 HFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGL 122
+A NLR+PGA VP N E L +ARDLVR GLD +D YR G N AWRRW ++ F L
Sbjct 67 LWATHNLRHPGARVPPNTDDEALAVARDLVRRGLDLHGIDSYRTGLNAAWRRWMELCFTL 126
Query 123 TSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAP 182
T+DPDEL ELL + + + + ++D T+ I M E ++LT A+R + L+++GAP
Sbjct 127 TADPDELRELLSITWHSMSTYIDDTITAIAIRMAAEHEQLTTGTNADRLATISLVLEGAP 186
Query 183 ISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAAT 242
ISR AE +LGY L HTAAV+W GD S LD A A G P PL VVA A+
Sbjct 187 ISRVRAEQQLGYRLTGPHTAAVVW---TSGDTSDLDAAAQALARHAGTPRPLTVVASASA 243
Query 243 RWVWVKDAPGFDI----DLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIR 298
WVW+ PG + DL E L D P+ R+A+G ++GFRRSH DA + R++ R
Sbjct 244 LWVWL---PGTVVPNSSDLARE-LADHPEVRVALGRPGDDLDGFRRSHLDAGSAQRLLTR 299
Query 299 LESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASR 358
L SP RVA + D+ +++L+T + AD+F++ TLG L +A + T+ T++++Q N SR
Sbjct 300 LGSPRRVARYDDIALISLITADTGKADEFVRDTLGELLTADQDTRDTVATYVSEQFNTSR 359
Query 359 AARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQW 401
A L+THRNT++ RL A LLPRPLA+ VAVAL+ +W
Sbjct 360 TAERLYTHRNTVIRRLTRADELLPRPLAENPTGVAVALDVLRW 402
>gi|284990852|ref|YP_003409406.1| putative PucR family transcriptional regulator [Geodermatophilus
obscurus DSM 43160]
gi|284064097|gb|ADB75035.1| putative transcriptional regulator, PucR family [Geodermatophilus
obscurus DSM 43160]
Length=438
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 190/424 (45%), Positives = 245/424 (58%), Gaps = 27/424 (6%)
Query 5 ETSPRIHELIREAARIALNPTQEWLDEFDRAILAANP--SIAADPALATVVKRSNRAHLI 62
+TSPR+ EL R A +AL+P +W++E A L +A DP LA +R N A+L+
Sbjct 12 DTSPRVRELFRRGAEVALDPRADWVEELHAAALGGQRMRPVAEDPVLAAATRRVNLANLL 71
Query 63 HFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGL 122
H+AAAN+++PG VP N GPE L ARDLVR GLD LD YR Q VAWRRW I F L
Sbjct 72 HWAAANVQHPGRRVPPNTGPESLDTARDLVRRGLDESVLDAYRAAQGVAWRRWMQICFEL 131
Query 123 TSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAP 182
T+DP EL ELLDV + F++ T+A + M+ ERD+LTR AERR V LL++GAP
Sbjct 132 TADPAELRELLDVSALSIATFIEDTVAATSERMRAERDELTRGAHAERRAAVTLLLEGAP 191
Query 183 ISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAAT 242
ISR AEA+LGY L HTAAV+W L+ A+A A G H L VVA AA
Sbjct 192 ISRARAEAQLGYGLAGPHTAAVVWSGSGTASE-QLEAAAEAVVRASGAAHRLTVVASAAA 250
Query 243 RWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLES- 301
WVW+ A D + L PD R+A+G ++GFRRSH DA TT RM+ RL+
Sbjct 251 LWVWLPVATAPDAGKLAGELAAHPDVRVAVGRPGRDVDGFRRSHLDAATTQRMVARLQKD 310
Query 302 -----------------------PHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESA 338
P +VA + DV++VALLT AD+F+ TLG+L A
Sbjct 311 PAAPHHSQARGGTLQRGHPTRQVPCQVARYEDVQLVALLTAEPTLADEFLADTLGDLLHA 370
Query 339 SPALKTTLLTFINQQCNASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEA 398
+ +LT++ + + SR A L+THRNT++ RL A LLPRPLA + VA ALE
Sbjct 371 EAETRHAVLTYVRELGSTSRTAERLYTHRNTVLRRLARADELLPRPLAQNVVAVAAALEV 430
Query 399 QQWR 402
+WR
Sbjct 431 LRWR 434
>gi|78059959|ref|YP_366534.1| putative regulator of polyketide synthase expression [Burkholderia
sp. 383]
gi|77964509|gb|ABB05890.1| putative regulator of polyketide synthase expression [Burkholderia
sp. 383]
Length=394
Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/397 (42%), Positives = 228/397 (58%), Gaps = 5/397 (1%)
Query 14 IREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAAANLRNPG 73
+R+ A IALN EWL E D+ +A +P+++ DP LA V+R NR LIH+A ANL NP
Sbjct 1 MRQGAEIALNVQTEWLQELDKENVATSPTMS-DPVLAAAVRRINRNGLIHWATANLENPC 59
Query 74 APVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDPDELHELL 133
APV L + L A++LVR GL L R Q+V W+RW D+AF LT DP EL E L
Sbjct 60 APVSRFLSADMLSSAQELVRRGLTDLVFVAARSSQSVVWQRWMDLAFTLTQDPVELREFL 119
Query 134 DVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISREHAEARLG 193
V R+ F+DT + G+ M+ ER+ R A+RR++V +++G I + A RLG
Sbjct 120 AVSSRSIAAFIDTNMVGMAEFMRAEREARLRGTHADRRELVTQIVEGTTIGAQEASRRLG 179
Query 194 YPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVWV-KDAPG 252
Y L++ H AA++W ++A + L+R ADA G + LVVVA AT WVW D
Sbjct 180 YTLEQRHHAAIVWSEEADIELGLLERAADALAQCAGTRNALVVVANTATLWVWTYHDGKP 239
Query 253 FDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVAFFTDVE 312
D+ + ++ +P +A+ G+EGFR H DAL T R++ RL + V +
Sbjct 240 LDMPSLQRAINALPGVHMAVATAGSGMEGFRHGHLDALATQRLLGRLHAGVGVVHADSMS 299
Query 313 MVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTHRNTLMN 372
++AL+T + E F+ TLGNL SA +L+ L F+ + C+ + AA HRNTL+
Sbjct 300 LIALMTNHMESLQQFVTNTLGNLASADKSLRDALRAFLAEGCSVTDAAEKTHVHRNTLLR 359
Query 373 RLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDP 409
RLE A+ LLPRPLA +HVA ALE W SDP
Sbjct 360 RLERAESLLPRPLAQQRLHVAAALEVLHW---IASDP 393
>gi|289705749|ref|ZP_06502133.1| conserved hypothetical protein [Micrococcus luteus SK58]
gi|289557589|gb|EFD50896.1| conserved hypothetical protein [Micrococcus luteus SK58]
Length=414
Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 177/398 (45%), Positives = 240/398 (61%), Gaps = 3/398 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAAN--PSIAADPALATVVKRSNRAHLIHF 64
SP + L+R+AA +AL P EW + D A LA IAADP LA ++R+ A+L+H+
Sbjct 15 SPPVRRLLRQAAELALRPRPEWTADIDAAALAGTRMEVIAADPVLAEGIRRTTTANLLHW 74
Query 65 AAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTS 124
AAAN++ PG VP NL P+ L ARDL R GL ALD YR GQ++A RRW I F LT
Sbjct 75 AAANVKAPGRRVPPNLEPDNLETARDLARRGLGRTALDSYRTGQSLASRRWMAICFELTQ 134
Query 125 DPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPIS 184
D LHELLDV + F+D TL + ++ ERD+L R AERR +V +++GAPIS
Sbjct 135 DLSLLHELLDVSLLSIATFIDDTLDAVFAVLEAERDQLHRGSHAERRAVVARIVEGAPIS 194
Query 185 REHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRW 244
R AE +LG+PL H AAV+W +GD + L+ A+A AGG L VVA +A+ W
Sbjct 195 RARAETQLGHPLTGPHVAAVVW-TTLEGDPAALEAAAEALAQAGGTARRLTVVASSASHW 253
Query 245 VWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHR 304
+W+ A +D + L P+ +AIG + GFRRSH DA RM+ RL SP R
Sbjct 254 LWLPLAAAPAVDDVASRLAGHPEVSVAIGRPGHDVVGFRRSHLDAAAAQRMMTRLASPQR 313
Query 305 VAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLF 364
+A + DV++V +LT AD ++ LG+L +A+ + +LT + ++ N SR A L
Sbjct 314 IARYQDVQLVDVLTAEPVRADGYVTDVLGDLATAAQEIHDAVLTLVQERFNTSRTAERLH 373
Query 365 THRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 402
THRNT++ RL A LLPRPLA+ + VA AL+ QWR
Sbjct 374 THRNTVIRRLARADELLPRPLAENPVDVAAALQVLQWR 411
>gi|289570513|ref|ZP_06450740.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544267|gb|EFD47915.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=247
Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/219 (67%), Positives = 166/219 (76%), Gaps = 0/219 (0%)
Query 191 RLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVWVKDA 250
+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP PL+ VA AATRWVWV DA
Sbjct 1 KLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDA 60
Query 251 PGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVAFFTD 310
D D IH+VL P ARIA+G TA GI+GFRRSHRDAL T RM+ RL S R+AFF D
Sbjct 61 ATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFAD 120
Query 311 VEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTHRNTL 370
+ M+A+LTEN + A DFI TLG+LESASP L TT+LT+IN+QCNASRAA +L THRNTL
Sbjct 121 IHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTL 180
Query 371 MNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDP 409
+ RLETAQRLLPRPL T I VAVA+ A QWR TSDP
Sbjct 181 LRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDP 219
>gi|26989534|ref|NP_744959.1| hypothetical protein PP_2815 [Pseudomonas putida KT2440]
gi|24984409|gb|AAN68423.1|AE016475_2 conserved hypothetical protein [Pseudomonas putida KT2440]
Length=417
Score = 275 bits (704), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 150/397 (38%), Positives = 223/397 (57%), Gaps = 2/397 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAA--NPSIAADPALATVVKRSNRAHLIHF 64
S + EL+R+ A +A EW++ ++++ ++ + + DP + +R+NRA L+H+
Sbjct 12 SETVRELMRKGAELAQALPAEWVERLNQSLFSSPEDARLLEDPVILAACRRANRAELLHW 71
Query 65 AAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTS 124
A ANL+ PG PV + + + AR+L R GL L +++ R QN AW W +AF LT
Sbjct 72 ANANLQRPGEPVEPYVSADMVDTARELARRGLSELLMNVARSTQNAAWDLWMKMAFSLTQ 131
Query 125 DPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPIS 184
DP L E L+V R+ +EF+D+ + +T + E+ D P ++R +V L+DG +
Sbjct 132 DPAVLEEFLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLDGRDVD 191
Query 185 REHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRW 244
E RLGY L + H A ++W + + L+ +A A G PL+V AG AT W
Sbjct 192 AEQFGRRLGYSLAQRHHACLVWSETPDAEIRPLEDMARALAQLTGTVAPLIVFAGPATLW 251
Query 245 VWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHR 304
W A D++L+ +V P R AIG+ G+ GFRRSH +ALTT R++ RL
Sbjct 252 AWSNAAKPLDLNLLQDVARQFPKIRAAIGSAGAGMNGFRRSHLEALTTQRLMGRLAGSPA 311
Query 305 VAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLF 364
VA V MV+L+T++A A F+ TLG L + L+ +L F+ CN ++ A +L
Sbjct 312 VATIDQVRMVSLMTQDARAARQFVLSTLGRLATEPTVLQHSLHAFLANGCNITQTAEVLG 371
Query 365 THRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQW 401
THRNTL+ RLE AQ LLP PLAD I +A ALE W
Sbjct 372 THRNTLLRRLERAQDLLPIPLADHRIQIAAALELVIW 408
>gi|254240668|ref|ZP_04933990.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|12698406|gb|AAK01520.1| putative transcriptional activator [Pseudomonas aeruginosa]
gi|126194046|gb|EAZ58109.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length=417
Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/397 (38%), Positives = 218/397 (55%), Gaps = 2/397 (0%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAA--NPSIAADPALATVVKRSNRAHLIHF 64
S + EL+R+ A +A EW++ ++A+ ++ + + DP + +R+NRA L+H+
Sbjct 12 SEAVRELMRKGAELAQTLPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHW 71
Query 65 AAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTS 124
A ANL+ PG PV + + + AR+L R GL L +++ R QN AW W +AF LT
Sbjct 72 ANANLQRPGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQ 131
Query 125 DPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPIS 184
DP L E L+V R+ +EF+D+ + +T + E+ D P ++R +V L++G +
Sbjct 132 DPRVLEEFLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLEGRDVD 191
Query 185 REHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRW 244
E RLGY L + H A ++W + + L+ VA G PL+V AG AT W
Sbjct 192 TEQFGRRLGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLW 251
Query 245 VWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHR 304
VW A D++L+ + R AIG+ G+ GFRRSH +ALTT R++ RL
Sbjct 252 VWSHAAKPLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPA 311
Query 305 VAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLF 364
VA V MV+L+T++ A F+ TLG L + L+ +L F+ CN ++ A L
Sbjct 312 VATIDQVRMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALG 371
Query 365 THRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQW 401
THRNTL+ RLE AQ LLP LAD I +A ALE W
Sbjct 372 THRNTLLRRLERAQDLLPVRLADHRIQIAAALELVIW 408
>gi|313110892|ref|ZP_07796735.1| hypothetical protein PA39016_002840001 [Pseudomonas aeruginosa
39016]
gi|310883237|gb|EFQ41831.1| hypothetical protein PA39016_002840001 [Pseudomonas aeruginosa
39016]
Length=399
Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 145/390 (38%), Positives = 214/390 (55%), Gaps = 2/390 (0%)
Query 14 IREAARIALNPTQEWLDEFDRAILAA--NPSIAADPALATVVKRSNRAHLIHFAAANLRN 71
+R+ A +A EW++ ++A+ ++ + + DP + +R+NRA L+H+A ANL+
Sbjct 1 MRKGAELAQALPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHWANANLQR 60
Query 72 PGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDPDELHE 131
PG PV + + + AR+L R GL L +++ R QN AW W +AF LT DP L E
Sbjct 61 PGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQDPRVLEE 120
Query 132 LLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISREHAEAR 191
L+V R+ +EF+D+ + +T + E+ D P ++R +V L+DG + E R
Sbjct 121 FLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLDGRDVDTEQFGRR 180
Query 192 LGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVWVKDAP 251
LGY L + H A ++W + + L+ VA G PL+V AG AT WVW A
Sbjct 181 LGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLWVWSHAAK 240
Query 252 GFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVAFFTDV 311
D++L+ + R AIG+ G+ GFRRSH +ALTT R++ RL VA V
Sbjct 241 PLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQV 300
Query 312 EMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTHRNTLM 371
MV+L+T++ A F+ TLG L + L+ +L F+ CN ++ A L THRNTL+
Sbjct 301 RMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALGTHRNTLL 360
Query 372 NRLETAQRLLPRPLADTTIHVAVALEAQQW 401
RLE AQ LLP LAD I +A ALE W
Sbjct 361 RRLERAQDLLPVRLADHRIQIAAALELVIW 390
>gi|107101671|ref|ZP_01365589.1| hypothetical protein PaerPA_01002715 [Pseudomonas aeruginosa
PACS2]
Length=399
Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 145/390 (38%), Positives = 214/390 (55%), Gaps = 2/390 (0%)
Query 14 IREAARIALNPTQEWLDEFDRAILAA--NPSIAADPALATVVKRSNRAHLIHFAAANLRN 71
+R+ A +A EW++ ++A+ ++ + + DP + +R+NRA L+H+A ANL+
Sbjct 1 MRKGAELAQALPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHWANANLQR 60
Query 72 PGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDPDELHE 131
PG PV + + + AR+L R GL L +++ R QN AW W +AF LT DP L E
Sbjct 61 PGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQDPRVLEE 120
Query 132 LLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISREHAEAR 191
L+V R+ +EF+D+ + +T + E+ D P ++R +V L+DG + E R
Sbjct 121 FLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLDGRDVDTEQFGRR 180
Query 192 LGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVWVKDAP 251
LGY L + H A ++W + + L+ VA G PL+V AG AT WVW A
Sbjct 181 LGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLWVWSHAAK 240
Query 252 GFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVAFFTDV 311
D++L+ + R AIG+ G+ GFRRSH +ALTT R++ RL VA V
Sbjct 241 PLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQV 300
Query 312 EMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTHRNTLM 371
MV+L+T++ A F+ TLG L + L+ +L F+ CN ++ A L THRNTL+
Sbjct 301 RMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALGTHRNTLL 360
Query 372 NRLETAQRLLPRPLADTTIHVAVALEAQQW 401
RLE AQ LLP LAD I +A ALE W
Sbjct 361 RRLERAQDLLPVRLADHRIQIAAALELVIW 390
>gi|218891802|ref|YP_002440669.1| hypothetical protein PLES_30801 [Pseudomonas aeruginosa LESB58]
gi|218772028|emb|CAW27807.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
Length=399
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 144/390 (37%), Positives = 214/390 (55%), Gaps = 2/390 (0%)
Query 14 IREAARIALNPTQEWLDEFDRAILAA--NPSIAADPALATVVKRSNRAHLIHFAAANLRN 71
+R+ A +A EW++ ++A+ ++ + + DP + +R+NRA L+H+A ANL+
Sbjct 1 MRKGAELAQTLPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHWANANLQR 60
Query 72 PGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDPDELHE 131
PG PV + + + AR+L R GL L +++ R QN AW W +AF LT DP L E
Sbjct 61 PGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQDPRVLEE 120
Query 132 LLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISREHAEAR 191
L+V R+ +EF+D+ + +T + E+ D P ++R +V L++G + E R
Sbjct 121 FLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLEGRDVDTEQFGRR 180
Query 192 LGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVWVKDAP 251
LGY L + H A ++W + + L+ VA G PL+V AG AT WVW A
Sbjct 181 LGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLWVWSHAAK 240
Query 252 GFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVAFFTDV 311
D++L+ + R AIG+ G+ GFRRSH +ALTT R++ RL VA V
Sbjct 241 PLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQV 300
Query 312 EMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTHRNTLM 371
MV+L+T++ A F+ TLG L + L+ +L F+ CN ++ A L THRNTL+
Sbjct 301 RMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALGTHRNTLL 360
Query 372 NRLETAQRLLPRPLADTTIHVAVALEAQQW 401
RLE AQ LLP LAD I +A ALE W
Sbjct 361 RRLERAQDLLPVRLADHRIQIAAALELVIW 390
>gi|296140575|ref|YP_003647818.1| PucR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296028709|gb|ADG79479.1| putative transcriptional regulator, PucR family [Tsukamurella
paurometabola DSM 20162]
Length=406
Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 157/397 (40%), Positives = 224/397 (57%), Gaps = 3/397 (0%)
Query 9 RIHELIREAARIALNPTQEWLDEFDRAILAANP--SIAADPALATVVKRSNRAHLIHFAA 66
RI LIRE A L + +DE + A AA ++ DP L +R NR +++H+ +
Sbjct 11 RIAALIREVAERLLASSDAAVDELNAAAHAAADYRAVLEDPQLVAADRRMNRTNMLHWLS 70
Query 67 ANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDP 126
ANL++PGA VP + P+ L++ARD+VR GLD L +R Q+ AW W D F +T D
Sbjct 71 ANLQDPGARVPPSNDPDILQLARDVVRRGLDMHDLGSWRGAQHGAWSAWVDECFAVTDDL 130
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
DEL EL+ + R+ + F+D ++A + ++ ER +L R AER VQLL++GAPI R
Sbjct 131 DELRELMKISERSMSTFIDDSIAALDEYVEQERAELARGASAERHATVQLLLEGAPIGRA 190
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
AE+RLGY L SH AA+ W + LD A+A A G P L + A A+ WVW
Sbjct 191 RAESRLGYALTGSHVAAITWS-DCADAAAGLDAAAEAMMRACGAPRRLTLNASASALWVW 249
Query 247 VKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRVA 306
++ + VL D +A G ++GFRRSH DA R++ R+ S RV
Sbjct 250 APAGSVPTVEDMDAVLADRTGIHVAFGRPGEDLDGFRRSHLDATAAQRVLARVGSARRVV 309
Query 307 FFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLFTH 366
+ DV ++++LT + AD F+ TLG+L +A L+ T LT++ ++ NAS AA L+TH
Sbjct 310 RYEDVALISVLTADMAQADQFVSDTLGDLATADATLRDTALTYVRERFNASAAADKLYTH 369
Query 367 RNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWRE 403
RNT+ RL +LLP PLAD V AL Q R+
Sbjct 370 RNTVERRLARVDQLLPAPLADNAASVVAALMLVQLRD 406
>gi|326381991|ref|ZP_08203684.1| putative transcriptional regulator, PucR family protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326199417|gb|EGD56598.1| putative transcriptional regulator, PucR family protein [Gordonia
neofelifaecis NRRL B-59395]
Length=405
Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 159/403 (40%), Positives = 223/403 (56%), Gaps = 7/403 (1%)
Query 3 LRETSPRIHELIREAARIALNPTQEWLDEFDRAIL--AANPSIAADPALATVVKRSNRAH 60
LRE S + LIR + LN + W+ + + A + A + D L V R N+ +
Sbjct 8 LREPSAAVAALIRAGVEVVLNAPEAWIADMNDAAMHPAGMERVVVDLDLREVALRINQGN 67
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
L H+A +NL PGA V NL E + RDLVR G DA ALD +R QN AWR W I F
Sbjct 68 LNHWAQSNLERPGARVTVNLTEETVGFIRDLVRRGFDAGALDSFRTAQNTAWRLWMQICF 127
Query 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
GLT DP+ L ELL+V + F+D T+ + ++ + R +L D A+RR +V L+++G
Sbjct 128 GLTHDPEALRELLEVTSVSIATFIDDTVGELARQIDVARAELAGDTHAQRRAVVALILEG 187
Query 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
AP++ AE +L Y ++ +A VI GD L+ +A A G L V+AGA
Sbjct 188 APVAPARAELQLRYSVEGPQSAMVISGDAGVAP-DDLEAACEAIMVASGVTRRLTVLAGA 246
Query 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
+ WVW+ P + + L D P RIA G+ G EGFRRSH +AL +++ RL
Sbjct 247 SELWVWL---PTERLT-VESALADHPHVRIAAGSAGHGREGFRRSHFEALEGKQLLNRLG 302
Query 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
S R A + D+ ++A +T + DDFI TLG+L A L ++ + QCNAS AA
Sbjct 303 SATRFAAYDDLALLAAMTSDLTRLDDFIAHTLGDLALADRGLHDSMRAWFAAQCNASAAA 362
Query 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWRE 403
L+THRNT++ + AQ LLPRPL + VA ALEA +WR+
Sbjct 363 AHLYTHRNTVVRHVARAQELLPRPLDANAVAVAAALEALRWRQ 405
>gi|54023238|ref|YP_117480.1| hypothetical protein nfa12710 [Nocardia farcinica IFM 10152]
gi|54014746|dbj|BAD56116.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=397
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 144/393 (37%), Positives = 203/393 (52%), Gaps = 11/393 (2%)
Query 10 IHELIREAARIALNPTQEWLDEFDRAILAANP---SIAADPALATVVKRSNRAHLIHFAA 66
+ EL R+ A L E L E + A L +P +IA DP LA R L +
Sbjct 1 MRELFRDVAETMLARHTEILAEMEEATLR-DPRYLAIAQDPVLAESSDRVGVFALKKWLT 59
Query 67 ANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTSDP 126
+N+ PGA VP E AR++V GL + +R GQ V WR W F + D
Sbjct 60 SNIAAPGARVPPPDSEETRTYARNVVLRGLTTDEVTSWRAGQYVVWRWWLAECFRVARDL 119
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
DEL L+ V + VD +A + ++ R++ +R V+LL+ GA I+
Sbjct 120 DELESLVAVSACSLTTAVDDAIAALAQQVDDVREEFAGGAQLQRYATVELLLQGADIAPA 179
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
AEA+LGY L SH AV+W D + H+ L+ V++ A G L VVAG A +W+W
Sbjct 180 RAEAQLGYALTGSHIGAVVWTDSERDAHA-LEAVSEQLMRACGAASRLTVVAGTAAQWLW 238
Query 247 VKDA---PGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPH 303
+ P D++ E+L P AR+A+G A GI GFRR+H DA R++ RL S
Sbjct 239 IPAKTVPPAADLE---EMLSRHPRARVALGRAASGINGFRRTHLDAAAAQRLLSRLRSNL 295
Query 304 RVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLL 363
V + DV+M+ L++ + D F+ LG+ E+ASP L T+LT++ + N S A L
Sbjct 296 AVIRYEDVQMIDLMSADVSQLDQFVTDVLGDFEAASPVLHQTVLTYVEEGLNRSSTADRL 355
Query 364 FTHRNTLMNRLETAQRLLPRPLADTTIHVAVAL 396
+THRNT+ RL LLPRP AD + VA AL
Sbjct 356 YTHRNTIDRRLARVDELLPRPFADRPVEVATAL 388
>gi|289750013|ref|ZP_06509391.1| transcriptional activator [Mycobacterium tuberculosis T92]
gi|289690600|gb|EFD58029.1| transcriptional activator [Mycobacterium tuberculosis T92]
Length=132
Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)
Query 1 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH
Sbjct 12 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 71
Query 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQ 108
LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQ
Sbjct 72 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQ 119
>gi|304319834|ref|YP_003853477.1| hypothetical protein PB2503_01282 [Parvularcula bermudensis HTCC2503]
gi|303298737|gb|ADM08336.1| hypothetical protein PB2503_01282 [Parvularcula bermudensis HTCC2503]
Length=403
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 142/403 (36%), Positives = 200/403 (50%), Gaps = 7/403 (1%)
Query 6 TSPRIHELIREAA-RIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHF 64
T R+ L+REAA R LNP + L D A+L A DP L ++ +NR ++ ++
Sbjct 4 TPDRLAYLMREAATRARLNPDKS-LKMIDDAVLNAIDQ-TQDPLLVAQIRLANRLNMDYW 61
Query 65 AAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTS 124
+ P NL PE LR + RVGL AL+ +R GQN A+ W ++ F LT
Sbjct 62 LNRAFQAPEKIPEPNLSPEILRSVHENARVGLGETALEAFRAGQNAAFMIWMEVVFELTD 121
Query 125 DPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPIS 184
DP+EL +LD R+ + FV+ T I E + + PA+RR +V+ L++G
Sbjct 122 DPEELKAVLDHSLRSISSFVEETARAIRIENAKGLEDAAQGSPAQRRVLVERLLEGETFD 181
Query 185 REHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRW 244
A RLGY LD+ H A + W D+ +GD L A L + + W
Sbjct 182 APLAARRLGYRLDQRHQAVIFWIDRMEGDPDILADFATRLTTLTPGKSILRIDEDKSRLW 241
Query 245 VWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHR 304
+W D D ++ + + +AIG G+EGFRRSH DA T R+I R
Sbjct 242 LWFTDK--IDSKMLASLRPET--VYVAIGPVLSGVEGFRRSHLDARTAERLIAEGPGDRR 297
Query 305 VAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLLF 364
+A + D + AL+ N+ D F++ LG L +A P +L + N SR A L
Sbjct 298 IATYEDTRLAALMGTNSALRDQFLEEVLGPLSTAPPHFAQSLRAYFLHGENVSRTAEALA 357
Query 365 THRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTS 407
HRNTLM LE A+ LLPRPL++ I VA ALEA WR + S
Sbjct 358 IHRNTLMRHLEGAEDLLPRPLSEARIEVAAALEALHWRRRDGS 400
>gi|240170335|ref|ZP_04748994.1| hypothetical protein MkanA1_13565 [Mycobacterium kansasii ATCC
12478]
Length=415
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 141/395 (36%), Positives = 207/395 (53%), Gaps = 5/395 (1%)
Query 8 PRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAHLIHFAAA 67
P + EL+ E A + LN + E D A++ P + AD A+A + SNRA+ + A
Sbjct 8 PAVVELVGEVADLMLNDIDHLVAEMDAAVVEIAPVMGADAAIAAEMSASNRANAVRLLTA 67
Query 68 NLRNPGAPVPANLGPEPLRMARDLVRVGLDA-LALDIYRIGQNVAWRRWTDIAFGLTSDP 126
R G PA++ PE L + R +VR G+D + YR GQNVAW+R+ A + +
Sbjct 68 LARRDGRGAPADVPPEALDVVRTVVRRGIDLDVIFQAYRRGQNVAWQRFMVYAAQVVAPG 127
Query 127 DELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPISRE 186
EL LL+V + +VD + + + Q ER++L A R + V+L++DGAPI R
Sbjct 128 PELVALLEVTSQLMFSYVDQVIGRVIADAQHEREELLGGAMARRTETVRLILDGAPIDRR 187
Query 187 HAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRWVW 246
A RLGY LDR HTA V+W + L+ A A PL + +G AT W W
Sbjct 188 RASERLGYELDRRHTALVLWAEPRGEIQGVLESAATLLARAARARPPLTLPSGTATLWAW 247
Query 247 VKDAPGFDIDLIHEVLHDI-PDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPHRV 305
+ +D + + + P R+A+G T PGI GFRRSH AL R++ R+
Sbjct 248 LGTNATPAMDALRDAIRSADPTVRVAVGPTQPGITGFRRSHAAALVIQRLLGGHPGGERI 307
Query 306 AFFTDVEMVALLTENAEGADDFIQRTLGNLESASPA---LKTTLLTFINQQCNASRAARL 362
AF D+E+ AL +N + A +F+ TLG L + +P L+ TL F+++ NA RA
Sbjct 308 AFHRDLEVTALAAQNQDQAAEFVATTLGPLAADTPGAARLRETLRVFLDEAENAPRAGIR 367
Query 363 LFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALE 397
L THRNT++ R+ A LL + + V +ALE
Sbjct 368 LHTHRNTVLQRVARATELLGHHPGERRLAVELALE 402
>gi|169629742|ref|YP_001703391.1| hypothetical protein MAB_2657c [Mycobacterium abscessus ATCC
19977]
gi|169241709|emb|CAM62737.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=422
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/395 (35%), Positives = 205/395 (52%), Gaps = 5/395 (1%)
Query 5 ETSPRIHELIREAARIALNPTQEWLDEFDRAILAANP---SIAADPALATVVKRSNRAHL 61
+ S + LIRE A L + E + A L +P +IA DP +A V R ++L
Sbjct 21 DASEPVRRLIRELAEKMLARSGEVAGDLTAASLE-DPRYRTIADDPVIAEVDARLTVSNL 79
Query 62 IHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFG 121
H+ +N+ PG V G ARD+V GL + +R Q V W+ W F
Sbjct 80 KHWLTSNISEPGHRVRPATGSAMRTYARDVVLRGLTTDDIQSWRAVQRVGWKWWLAACFQ 139
Query 122 LTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGA 181
+T D ++L EL++V + FVD ++A + ++ R++L +R V+LL+ GA
Sbjct 140 VTDDKEQLCELIEVTSNSLTTFVDDSIAELAEHVRRVREELAGGSQLQRYATVELLLQGA 199
Query 182 PISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAA 241
I+ AEA+LGY L SH AV+W D ++ + + L+R ++ A G L VVAG
Sbjct 200 DIAPARAEAQLGYALTGSHIGAVVWVD-SEKEIAALERASEQVMRACGADRRLTVVAGTV 258
Query 242 TRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLES 301
W+W+ + ++ + L R+A+G A G+ GFRR+H DA R++ RL S
Sbjct 259 ALWLWIPAKTTPTVAVLMDSLGRRSGVRVALGRAATGMAGFRRTHMDAAAAQRLLARLGS 318
Query 302 PHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAAR 361
P V + DV ++ LL+ + AD F+ LG +SASP L T+LT++ + N + A
Sbjct 319 PLSVVRYEDVHLMDLLSADPASADQFVTDVLGEFQSASPVLHQTVLTYVEEALNRTSTAE 378
Query 362 LLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVAL 396
L+THRNT+ RL LLP+P A I VA AL
Sbjct 379 RLYTHRNTIDRRLARVDELLPKPFARNPIEVAAAL 413
>gi|328886832|emb|CCA60071.1| hypothetical protein SVEN_6785 [Streptomyces venezuelae ATCC
10712]
Length=426
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/395 (34%), Positives = 190/395 (49%), Gaps = 12/395 (3%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAA--NPSIAADPALATVVKRSNRAHLIHF 64
S + + IR + L T W+D F R L A +P++ AD +L + NR+ L+ +
Sbjct 24 SREVADAIRSLCQRLLTETDAWVDAFARPSLVAQNDPALLADASLVEEDRALNRSDLVQW 83
Query 65 AAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLTS 124
AN++ PG V + P DLV G+ +R+ + WRRW +
Sbjct 84 LTANIQQPGRRVEPYVSPRTTAYINDLVSRGIAPDFAGAWRVALGIGWRRWLKECVADFA 143
Query 125 DPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPIS 184
DPD L +LDV TA V L + Q + AE ++QL+ GAP++
Sbjct 144 DPDLLVGVLDV---TAQSMVQYALDSVAALRQAGLAAAMGNTDAEGIALIQLIASGAPMA 200
Query 185 REHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATRW 244
+ AE RL Y + R H V+W D Q LD A + G LV A A +RW
Sbjct 201 EDLAEGRLRYRMARWHVGLVLWVDDPQ-RAGALDEAIAAVRSSAGGRSALVARASATSRW 259
Query 245 VWVKDAPGFDIDLIHEVLHDIP---DARIAIGATAPGIEGFRRSHRDALTTARMIIRLES 301
+W+ G + +H V D+ + R A+G G+EGFR SH+DAL ++IRL S
Sbjct 260 IWLS---GETVPDLHHVAKDLAATDEVRAAVGRPGRGLEGFRSSHQDALAAQALVIRLGS 316
Query 302 PHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAAR 361
R + DVE++ LT++ GA F+ TLG L A AL+ LLT++ + +RAA
Sbjct 317 ERRFTAYADVELIDALTKDRAGARRFVISTLGPLVEADTALRQALLTYVQCGFSTTRAAA 376
Query 362 LLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVAL 396
L+ HRNT+ R+ A L + D HVA AL
Sbjct 377 DLYAHRNTVERRVSRANELSAVKVEDNPTHVAAAL 411
>gi|226359516|ref|YP_002777294.1| CdaR family transcriptional regulator [Rhodococcus opacus B4]
gi|226238001|dbj|BAH48349.1| putative CdaR family transcriptional regulator [Rhodococcus opacus
B4]
Length=409
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/393 (35%), Positives = 197/393 (51%), Gaps = 5/393 (1%)
Query 7 SPRIHELIREAARIALNPTQEWLDEFDRAILAANP---SIAADPALATVVKRSNRAHLIH 63
S + LIR+ A + E +DE A LA +P IAADP LA R + A+L H
Sbjct 10 SESVRTLIRDIAESLIPRYHEVVDELVAASLA-DPRYHEIAADPVLAEADARLSVANLKH 68
Query 64 FAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAFGLT 123
+ +N+ +PG VP + E ARD+V L + +R V W W + F T
Sbjct 69 WLTSNIADPGRRVPTHASQEIKIYARDVVLRELTTDDVASWRATHRVTWHWWLNECFAAT 128
Query 124 SDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDGAPI 183
D D LHEL++V + FVD ++A + +Q R++L +R V+LL+ G+ I
Sbjct 129 DDTDVLHELVEVSANSLTAFVDDSIAALADYIQAVREELAGGPQLQRYATVELLLHGSNI 188
Query 184 SREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGAATR 243
AEA+LGY L SH A+IW D ++ D L+ A+ A G L VVAG A
Sbjct 189 EPSRAEAQLGYALTGSHVGAIIWAD-SEEDVGGLEPAAEQIMRACGAVSRLTVVAGTAAL 247
Query 244 WVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLESPH 303
W+W+ ++ + + + I R+A G + + GFRR+H DA R++ RL S
Sbjct 248 WLWMPSRLVPEVSDVADRIKHIKGIRVAFGRMSASVAGFRRTHMDAAAAQRLLARLNSRL 307
Query 304 RVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAARLL 363
+ + DV++V L++ + A ++ LG A P L T+LT + N S AA L
Sbjct 308 SIVRYEDVQLVDLMSADPALAAQYVLDVLGEFADADPVLHQTVLTCVQAGFNRSSAAERL 367
Query 364 FTHRNTLMNRLETAQRLLPRPLADTTIHVAVAL 396
+THRNT+ RL LLP+PLA V AL
Sbjct 368 YTHRNTIDRRLARIDELLPKPLASDPAGVVAAL 400
>gi|111020760|ref|YP_703732.1| hypothetical protein RHA1_ro03774 [Rhodococcus jostii RHA1]
gi|110820290|gb|ABG95574.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=402
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 124/341 (37%), Positives = 178/341 (53%), Gaps = 19/341 (5%)
Query 56 SNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDI----YRIGQNVA 111
SNRA++ R G P ++ PE L + R +VR G D LD+ YR GQN+
Sbjct 43 SNRANVARLLTTLARRDGRAAPIDVPPEALDVVRTVVRRGSD---LDVIFHAYRRGQNLV 99
Query 112 WRRWTDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERR 171
W+ + A + +L ELL+ + E+VD + + + Q ER+++ A R
Sbjct 100 WQSFIAHAARIVPPGPQLVELLEAFSQHLFEYVDHVIGRVIADAQREREEVLGGALARRV 159
Query 172 KIVQLLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCP 231
+ ++L++DGAPI A RLGY L R HTA V+W L+ A + A G
Sbjct 160 ETIRLILDGAPIDSRRAGERLGYELARRHTALVLWAQPPGEVQGALESAATSLARAAGAR 219
Query 232 HPLVVVAGAATRWVWVKDAPGFDIDLIHEVLHDI-----PDARIAIGATAPGIEGFRRSH 286
PL + AG +T W W G D D + L D P+ R+A+G T PGI GFRRSH
Sbjct 220 PPLTLPAGTSTLWAWF----GTDSDPALDTLRDALTRAQPNVRVAVGPTQPGITGFRRSH 275
Query 287 RDALTTARMIIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPA---LK 343
ALT R++ S R+A + D+E+ AL +N + A DF+ TLG L + +P+ L+
Sbjct 276 DAALTIQRLLSGHPSGARLALYRDLEVTALAAQNPDRAADFVATTLGPLAADTPSAARLR 335
Query 344 TTLLTFINQQCNASRAARLLFTHRNTLMNRLETAQRLLPRP 384
TL F+++ NA RAA L THRNT++ R+ A LL P
Sbjct 336 ETLRVFLDEADNAPRAAVRLHTHRNTVLQRVARATELLGHP 376
Lambda K H
0.321 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 852977278728
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40