BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1456c Length=310 Score E Sequences producing significant alignments: (Bits) Value gi|15840916|ref|NP_335953.1| hypothetical protein MT1503 [Mycoba... 594 7e-168 gi|15608594|ref|NP_215972.1| unidentified antibiotic-transport i... 593 1e-167 gi|308231846|ref|ZP_07663949.1| antibiotic-transport membrane AB... 592 2e-167 gi|340626470|ref|YP_004744922.1| putative unidentified antibioti... 592 3e-167 gi|254550472|ref|ZP_05140919.1| hypothetical protein Mtube_08427... 579 2e-163 gi|254821674|ref|ZP_05226675.1| hypothetical protein MintA_17192... 452 2e-125 gi|296170684|ref|ZP_06852259.1| cytochrome aa3 controlling prote... 436 3e-120 gi|183982274|ref|YP_001850565.1| antibiotic ABC transporter tran... 430 1e-118 gi|118617462|ref|YP_905794.1| antibiotic ABC transporter transme... 429 4e-118 gi|342858746|ref|ZP_08715401.1| cytochrome aa3 controlling prote... 426 2e-117 gi|118469858|ref|YP_887432.1| cytochrome aa3 controlling protein... 421 7e-116 gi|333990899|ref|YP_004523513.1| antibiotic ABC transporter tran... 412 3e-113 gi|240171371|ref|ZP_04750030.1| cytochrome aa3 controlling prote... 409 4e-112 gi|254775768|ref|ZP_05217284.1| hypothetical protein MaviaA2_140... 402 3e-110 gi|41407280|ref|NP_960116.1| hypothetical protein MAP1182c [Myco... 401 9e-110 gi|15827233|ref|NP_301496.1| hypothetical protein ML0587 [Mycoba... 400 1e-109 gi|336458009|gb|EGO36996.1| uncharacterized protein required for... 400 2e-109 gi|118464120|ref|YP_882505.1| cytochrome aa3 controlling protein... 399 4e-109 gi|111024140|ref|YP_707112.1| cytochrome oxidase assembly protei... 375 6e-102 gi|226306536|ref|YP_002766496.1| hypothetical protein RER_30490 ... 373 2e-101 gi|229493484|ref|ZP_04387269.1| cytochrome aa3 controlling prote... 372 5e-101 gi|54025537|ref|YP_119779.1| putative cytochrome oxidase assembl... 371 6e-101 gi|126435051|ref|YP_001070742.1| cytochrome oxidase assembly [My... 366 2e-99 gi|119868509|ref|YP_938461.1| cytochrome oxidase assembly [Mycob... 365 4e-99 gi|145224268|ref|YP_001134946.1| cytochrome oxidase assembly [My... 364 8e-99 gi|169629838|ref|YP_001703487.1| hypothetical protein MAB_2754 [... 362 5e-98 gi|108799396|ref|YP_639593.1| cytochrome oxidase assembly [Mycob... 361 1e-97 gi|226366379|ref|YP_002784162.1| hypothetical protein ROP_69700 ... 359 3e-97 gi|315444603|ref|YP_004077482.1| protein required for cytochrome... 355 4e-96 gi|120403710|ref|YP_953539.1| cytochrome oxidase assembly [Mycob... 352 6e-95 gi|333919566|ref|YP_004493147.1| cytochrome aa3 controlling prot... 343 2e-92 gi|312139621|ref|YP_004006957.1| cytochrome oxidase assembly pro... 320 2e-85 gi|325676703|ref|ZP_08156377.1| cytochrome oxidase assembly prot... 315 5e-84 gi|3560511|gb|AAC82554.1| unknown [Mycobacterium smegmatis str. ... 275 6e-72 gi|466899|gb|AAA17144.1| B1496_F2_61 [Mycobacterium leprae] 270 2e-70 gi|317508246|ref|ZP_07965926.1| cytochrome oxidase assembly prot... 268 6e-70 gi|296140214|ref|YP_003647457.1| cytochrome oxidase assembly pro... 267 1e-69 gi|237785548|ref|YP_002906253.1| cytochrome aa3 controlling prot... 265 7e-69 gi|260578761|ref|ZP_05846668.1| cytochrome aa3 controlling prote... 257 2e-66 gi|68536066|ref|YP_250771.1| cytochrome aa3 controlling protein ... 255 7e-66 gi|319947905|ref|ZP_08022090.1| hypothetical protein ES5_01206 [... 246 5e-63 gi|334563129|ref|ZP_08516120.1| cytochrome aa3 controlling prote... 241 8e-62 gi|296394476|ref|YP_003659360.1| cytochrome oxidase assembly [Se... 241 1e-61 gi|340794434|ref|YP_004759897.1| cytochrome aa3 controlling prot... 241 1e-61 gi|213965556|ref|ZP_03393750.1| cytochrome aa3 controlling prote... 240 2e-61 gi|311739479|ref|ZP_07713314.1| cytochrome oxidase assembly prot... 228 7e-58 gi|227504380|ref|ZP_03934429.1| possible cytochrome oxidase asse... 227 1e-57 gi|255325019|ref|ZP_05366125.1| cytochrome aa3 controlling prote... 226 3e-57 gi|300858516|ref|YP_003783499.1| cytochrome aa3 controlling prot... 226 3e-57 gi|308276470|gb|ADO26369.1| Cytochrome oxidase assembly protein ... 225 9e-57 >gi|15840916|ref|NP_335953.1| hypothetical protein MT1503 [Mycobacterium tuberculosis CDC1551] gi|308369446|ref|ZP_07417801.2| antibiotic-transport membrane ABC transporter [Mycobacterium tuberculosis SUMu002] gi|308370727|ref|ZP_07667002.1| antibiotic-transport membrane ABC transporter [Mycobacterium tuberculosis SUMu003] 16 more sequence titles Length=311 Score = 594 bits (1531), Expect = 7e-168, Method: Compositional matrix adjust. Identities = 310/310 (100%), Positives = 310/310 (100%), Gaps = 0/310 (0%) Query 1 VPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV 60 VPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV Sbjct 2 VPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV 61 Query 61 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG 120 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG Sbjct 62 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG 121 Query 121 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL 180 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL Sbjct 122 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL 181 Query 181 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA 240 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA Sbjct 182 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA 241 Query 241 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG 300 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG Sbjct 242 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG 301 Query 301 ERAQPQPLQR 310 ERAQPQPLQR Sbjct 302 ERAQPQPLQR 311 >gi|15608594|ref|NP_215972.1| unidentified antibiotic-transport integral membrane ABC transporter [Mycobacterium tuberculosis H37Rv] gi|31792650|ref|NP_855143.1| unidentified antibiotic-transport integral membrane ABC transporter [Mycobacterium bovis AF2122/97] gi|121637386|ref|YP_977609.1| putative unidentified antibiotic-transport integral membrane ABC transporter [Mycobacterium bovis BCG str. Pasteur 1173P2] 48 more sequence titles Length=310 Score = 593 bits (1528), Expect = 1e-167, Method: Compositional matrix adjust. Identities = 309/310 (99%), Positives = 310/310 (100%), Gaps = 0/310 (0%) Query 1 VPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV 60 +PYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV Sbjct 1 MPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV 60 Query 61 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG 120 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG Sbjct 61 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG 120 Query 121 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL 180 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL Sbjct 121 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL 180 Query 181 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA 240 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA Sbjct 181 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA 240 Query 241 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG 300 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG Sbjct 241 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG 300 Query 301 ERAQPQPLQR 310 ERAQPQPLQR Sbjct 301 ERAQPQPLQR 310 >gi|308231846|ref|ZP_07663949.1| antibiotic-transport membrane ABC transporter [Mycobacterium tuberculosis SUMu001] gi|308378942|ref|ZP_07668868.1| antibiotic-transport membrane ABC transporter [Mycobacterium tuberculosis SUMu010] gi|308380082|ref|ZP_07669115.1| antibiotic-transport membrane ABC transporter [Mycobacterium tuberculosis SUMu011] gi|308215867|gb|EFO75266.1| antibiotic-transport membrane ABC transporter [Mycobacterium tuberculosis SUMu001] gi|308358738|gb|EFP47589.1| antibiotic-transport membrane ABC transporter [Mycobacterium tuberculosis SUMu010] gi|308362666|gb|EFP51517.1| antibiotic-transport membrane ABC transporter [Mycobacterium tuberculosis SUMu011] Length=311 Score = 592 bits (1527), Expect = 2e-167, Method: Compositional matrix adjust. Identities = 309/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%) Query 1 VPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV 60 VPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV Sbjct 2 VPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV 61 Query 61 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG 120 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG Sbjct 62 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG 121 Query 121 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL 180 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL Sbjct 122 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL 181 Query 181 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA 240 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLV YLALLIGLGFGLLA Sbjct 182 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVTYLALLIGLGFGLLA 241 Query 241 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG 300 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG Sbjct 242 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG 301 Query 301 ERAQPQPLQR 310 ERAQPQPLQR Sbjct 302 ERAQPQPLQR 311 >gi|340626470|ref|YP_004744922.1| putative unidentified antibiotic-transport integral membrane ABC transporter [Mycobacterium canettii CIPT 140010059] gi|340004660|emb|CCC43804.1| putative unidentified antibiotic-transport integral membrane ABC transporter [Mycobacterium canettii CIPT 140010059] Length=310 Score = 592 bits (1525), Expect = 3e-167, Method: Compositional matrix adjust. Identities = 308/310 (99%), Positives = 310/310 (100%), Gaps = 0/310 (0%) Query 1 VPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVV 60 +PYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPV+V Sbjct 1 MPYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVLV 60 Query 61 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG 120 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG Sbjct 61 AEVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGG 120 Query 121 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL 180 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL Sbjct 121 ITVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNL 180 Query 181 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA 240 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA Sbjct 181 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA 240 Query 241 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG 300 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG Sbjct 241 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG 300 Query 301 ERAQPQPLQR 310 ERAQPQPLQR Sbjct 301 ERAQPQPLQR 310 >gi|254550472|ref|ZP_05140919.1| hypothetical protein Mtube_08427 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297731007|ref|ZP_06960125.1| hypothetical protein MtubKR_07942 [Mycobacterium tuberculosis KZN R506] Length=304 Score = 579 bits (1492), Expect = 2e-163, Method: Compositional matrix adjust. Identities = 303/304 (99%), Positives = 304/304 (100%), Gaps = 0/304 (0%) Query 7 VSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRV 66 +SPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRV Sbjct 1 MSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRV 60 Query 67 HQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTG 126 HQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTG Sbjct 61 HQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTG 120 Query 127 LLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVT 186 LLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVT Sbjct 121 LLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVT 180 Query 187 GTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRA 246 GTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRA Sbjct 181 GTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRA 240 Query 247 ILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERAQPQ 306 ILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERAQPQ Sbjct 241 ILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERAQPQ 300 Query 307 PLQR 310 PLQR Sbjct 301 PLQR 304 >gi|254821674|ref|ZP_05226675.1| hypothetical protein MintA_17192 [Mycobacterium intracellulare ATCC 13950] Length=317 Score = 452 bits (1164), Expect = 2e-125, Method: Compositional matrix adjust. Identities = 254/305 (84%), Positives = 273/305 (90%), Gaps = 0/305 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D +PSL VQR+IAA VILTQGGIA+TGAIVRVTASGLGCPTWPQCFPGSF PV AEV Sbjct 11 DLLPNPSLGVQRLIAAAVILTQGGIAITGAIVRVTASGLGCPTWPQCFPGSFVPVAHAEV 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNRMVTFAVVI AALAVL VTRARRR EVL YAWLMPVSTVVQA+IGGITV Sbjct 71 PRIHQAVEFGNRMVTFAVVITAALAVLAVTRARRRREVLVYAWLMPVSTVVQAVIGGITV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 RTGLLWWTVAIHLL SMTMVWLAVLLYVKI +PDDG V L+ PLRALTALS +NLAAV Sbjct 131 RTGLLWWTVAIHLLTSMTMVWLAVLLYVKIDEPDDGAVRVLIPPPLRALTALSGVNLAAV 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGTLVTAAGPHAGDRS +RTVPRLKVE+ TLVH+HSSLLVAYLAL++GLGFGLLAV A Sbjct 191 LVTGTLVTAAGPHAGDRSATRTVPRLKVEVATLVHVHSSLLVAYLALVVGLGFGLLAVRA 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 TR +L RL VLL L+ QAAVGT QY+TGVPAALVA+HVAGAAA TAATAALWASM ERA Sbjct 251 TRPVLRRLGVLLVLLCAQAAVGTAQYYTGVPAALVALHVAGAAAATAATAALWASMRERA 310 Query 304 QPQPL 308 +P+PL Sbjct 311 EPEPL 315 >gi|296170684|ref|ZP_06852259.1| cytochrome aa3 controlling protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894673|gb|EFG74407.1| cytochrome aa3 controlling protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=317 Score = 436 bits (1120), Expect = 3e-120, Method: Compositional matrix adjust. Identities = 257/305 (85%), Positives = 274/305 (90%), Gaps = 0/305 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D PS+RVQRVIAA VILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSF PV AEV Sbjct 11 DLLPDPSVRVQRVIAAAVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFVPVAHAEV 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNRM+TFAVVIAAALAVL VTRARRR E+L YAWLMPVSTVVQA+IGGITV Sbjct 71 PRIHQAVEFGNRMITFAVVIAAALAVLAVTRARRRREILVYAWLMPVSTVVQAVIGGITV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 RTGLLWWTVAIHLL SMTMVWL+VLLYVK+G+PDDGVVH V PLRALTAL L+LAAV Sbjct 131 RTGLLWWTVAIHLLTSMTMVWLSVLLYVKVGEPDDGVVHRRVARPLRALTALIGLDLAAV 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGTLVTAAGPHAGDRSP+RTVPRL+V + TLVH HSSLL+AYLAL++GLGFGLLAV A Sbjct 191 LVTGTLVTAAGPHAGDRSPTRTVPRLEVAVETLVHAHSSLLIAYLALVVGLGFGLLAVRA 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 R IL RL VLLALV QAAVGT QYFTGVPAALVA+HVAGAAA TAATAALWASM ERA Sbjct 251 ARRILRRLIVLLALVCAQAAVGTAQYFTGVPAALVALHVAGAAACTAATAALWASMRERA 310 Query 304 QPQPL 308 QP+PL Sbjct 311 QPEPL 315 >gi|183982274|ref|YP_001850565.1| antibiotic ABC transporter transmembrane protein [Mycobacterium marinum M] gi|183175600|gb|ACC40710.1| unidentified antibiotic-transport integral membrane ABC transporter [Mycobacterium marinum M] Length=318 Score = 430 bits (1106), Expect = 1e-118, Method: Compositional matrix adjust. Identities = 259/301 (87%), Positives = 276/301 (92%), Gaps = 0/301 (0%) Query 9 PSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQ 68 PSLRVQR+IAA VILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPV VAEVPR+HQ Sbjct 17 PSLRVQRIIAAAVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVAVAEVPRIHQ 76 Query 69 AVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLL 128 AVEFGNRM+TFAVVI AALAVL VTRARRRTEVL YAWLMP STVVQA+IGGITVRTGLL Sbjct 77 AVEFGNRMITFAVVITAALAVLAVTRARRRTEVLVYAWLMPASTVVQAVIGGITVRTGLL 136 Query 129 WWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGT 188 WWTVAIHLLASMTMVWL+VLLYVK+GQPD+GV HELVV PLRAL LSA+NLAAVLVTGT Sbjct 137 WWTVAIHLLASMTMVWLSVLLYVKVGQPDEGVAHELVVRPLRALAVLSAVNLAAVLVTGT 196 Query 189 LVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAIL 248 LVTAAGPHAGD+SPSRTVPRLK+EIT LVH+HSSLLV+YLALL+GLGFGLLAVGAT AIL Sbjct 197 LVTAAGPHAGDKSPSRTVPRLKIEITDLVHLHSSLLVSYLALLVGLGFGLLAVGATHAIL 256 Query 249 VRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERAQPQPL 308 RL VL+ LV QA VGT QY+TGVPAALVA+HVAGAAA TAATAALWASM ER Q + Sbjct 257 RRLTVLVVLVFAQAGVGTVQYYTGVPAALVAVHVAGAAACTAATAALWASMRERTQAEAS 316 Query 309 Q 309 Q Sbjct 317 Q 317 >gi|118617462|ref|YP_905794.1| antibiotic ABC transporter transmembrane protein [Mycobacterium ulcerans Agy99] gi|118569572|gb|ABL04323.1| unidentified antibiotic-transport integral membrane ABC transporter [Mycobacterium ulcerans Agy99] Length=309 Score = 429 bits (1102), Expect = 4e-118, Method: Compositional matrix adjust. Identities = 259/306 (85%), Positives = 276/306 (91%), Gaps = 0/306 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D PSLRVQR+IAA VILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPV VAEV Sbjct 3 DLLPDPSLRVQRIIAAAVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVAVAEV 62 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNRM+TFAVVI AALAVL VTRARRRTEVL YAWLMP STVVQA+IGGITV Sbjct 63 PRIHQAVEFGNRMITFAVVITAALAVLAVTRARRRTEVLVYAWLMPASTVVQAVIGGITV 122 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 RTGLLWWTVAIHLLASMTMVWL+VLLY K+GQPD+GV HELVV PLRAL LSA+NLAAV Sbjct 123 RTGLLWWTVAIHLLASMTMVWLSVLLYAKVGQPDEGVAHELVVRPLRALAVLSAVNLAAV 182 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGTLVTAAGPHAGD+SPSRTVPRLK+EIT LVH+HSSLLV+YLALL+GLGFGLLAVGA Sbjct 183 LVTGTLVTAAGPHAGDKSPSRTVPRLKIEITDLVHLHSSLLVSYLALLVGLGFGLLAVGA 242 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 T AIL RL VL+ LV QA VGT QY+TGVPAALVA+HVAGAAA TAATAALWASM ER Sbjct 243 THAILRRLTVLVVLVFAQAGVGTVQYYTGVPAALVAVHVAGAAACTAATAALWASMRERT 302 Query 304 QPQPLQ 309 Q + Q Sbjct 303 QAEASQ 308 >gi|342858746|ref|ZP_08715401.1| cytochrome aa3 controlling protein [Mycobacterium colombiense CECT 3035] gi|342134450|gb|EGT87630.1| cytochrome aa3 controlling protein [Mycobacterium colombiense CECT 3035] Length=316 Score = 426 bits (1096), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 255/308 (83%), Positives = 275/308 (90%), Gaps = 3/308 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D +PSL VQR+IAA VILTQGGIA+TGAIVRVTASGLGCPTWPQCFPGSF PV AEV Sbjct 7 DLLPNPSLGVQRLIAAAVILTQGGIAITGAIVRVTASGLGCPTWPQCFPGSFVPVAHAEV 66 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNRMVTFAVVI AALAVL VTRARRR EVL YAWLMPVSTVVQA+IGGITV Sbjct 67 PRIHQAVEFGNRMVTFAVVITAALAVLAVTRARRRREVLVYAWLMPVSTVVQAVIGGITV 126 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDD---GVVHELVVSPLRALTALSALNL 180 RTGLLWWTVAIHLL SMTMVWLAVLLYVK+G+PD GVV E VV PLRALTAL+ L+L Sbjct 127 RTGLLWWTVAIHLLTSMTMVWLAVLLYVKVGEPDGDGAGVVRERVVRPLRALTALTGLDL 186 Query 181 AAVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLA 240 AAVLVTGTLVTAAGPHAGDRSP+RTVPRLKVE+ TLVHMHSSLL+AYL LL+GLGFGLLA Sbjct 187 AAVLVTGTLVTAAGPHAGDRSPTRTVPRLKVEVDTLVHMHSSLLIAYLTLLVGLGFGLLA 246 Query 241 VGATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMG 300 V A R +L+RL VLLALV QAAVGT QY+TGVPA LVA+HVAGAAA TAAT+ALWASM Sbjct 247 VRAARPVLLRLGVLLALVVAQAAVGTAQYYTGVPAVLVALHVAGAAACTAATSALWASMR 306 Query 301 ERAQPQPL 308 ERA+P+PL Sbjct 307 ERAEPEPL 314 >gi|118469858|ref|YP_887432.1| cytochrome aa3 controlling protein [Mycobacterium smegmatis str. MC2 155] gi|118171145|gb|ABK72041.1| cytochrome aa3 controlling protein [Mycobacterium smegmatis str. MC2 155] Length=320 Score = 421 bits (1082), Expect = 7e-116, Method: Compositional matrix adjust. Identities = 231/303 (77%), Positives = 254/303 (84%), Gaps = 3/303 (0%) Query 9 PSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQ 68 PSLRVQR+IA +VILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPV AEV VHQ Sbjct 17 PSLRVQRLIAFLVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVPHAEVAVVHQ 76 Query 69 AVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLL 128 VEFGNRM+TF VV+ AA AVL VTRARRR EVL YAWLMP STVVQA+IGGITV TGLL Sbjct 77 VVEFGNRMITFLVVLTAAAAVLAVTRARRRREVLVYAWLMPASTVVQAVIGGITVLTGLL 136 Query 129 WWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGT 188 WWTVAIHL+ASM MVWLAVLL+VKIGQPDDG+ V +PLR LT LSA+ LAAVLVTGT Sbjct 137 WWTVAIHLIASMVMVWLAVLLFVKIGQPDDGITRTRVPAPLRHLTVLSAVALAAVLVTGT 196 Query 189 LVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAIL 248 LVT AGPHAGD+S VPRL+VEITTLVHMHSSLL+AYL+L+I LGFGL A GA R ++ Sbjct 197 LVTGAGPHAGDKSIDAPVPRLQVEITTLVHMHSSLLIAYLSLVIALGFGLAATGAARPVM 256 Query 249 VRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGER---AQP 305 VRL VL+AL+ Q VG Q++TGVPAALVA+HVAGA TAATAALWASM ER A P Sbjct 257 VRLGVLVALICAQGLVGVVQFYTGVPAALVAVHVAGAGLCTAATAALWASMRERTPAAVP 316 Query 306 QPL 308 P+ Sbjct 317 APV 319 >gi|333990899|ref|YP_004523513.1| antibiotic ABC transporter transmembrane protein [Mycobacterium sp. JDM601] gi|333486868|gb|AEF36260.1| antibiotic ABC transporter transmembrane protein [Mycobacterium sp. JDM601] Length=316 Score = 412 bits (1059), Expect = 3e-113, Method: Compositional matrix adjust. Identities = 218/306 (72%), Positives = 246/306 (81%), Gaps = 2/306 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D PSLR QR++AA V+ TQG I+V+GAIVRVTASGLGCPTWPQCFPGS+ PV V+EV Sbjct 10 DLLPDPSLRTQRLLAAAVVFTQGFISVSGAIVRVTASGLGCPTWPQCFPGSYVPVAVSEV 69 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQA+EFGNRMVTFAVVI +ALAVL V RARRR EVL YAWLMP STV+QA+IGGITV Sbjct 70 PRIHQAIEFGNRMVTFAVVITSALAVLAVIRARRRREVLVYAWLMPASTVLQAIIGGITV 129 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDG--VVHELVVSPLRALTALSALNLA 181 RTGL WWTVA+HLL SM MVWLAVLLYVK+G+PD VV V PLR LTAL A+ LA Sbjct 130 RTGLAWWTVAVHLLVSMLMVWLAVLLYVKVGEPDGETVVVRHRVPVPLRRLTALCAVMLA 189 Query 182 AVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAV 241 AVLVTGTLVTAAGPHAGD+S +RTV RLKVE+ TL H+H SLL+ +L LL+GL FGL AV Sbjct 190 AVLVTGTLVTAAGPHAGDKSTTRTVARLKVEVVTLAHLHESLLIGFLGLLVGLAFGLAAV 249 Query 242 GATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGE 301 A + + RLA L AL Q +G QYFTGVPA LV IHVAGA VT ATAALWAS+ E Sbjct 250 RAAKPVTNRLAWLTALTLAQGLIGVVQYFTGVPAVLVTIHVAGAVLVTGATAALWASLRE 309 Query 302 RAQPQP 307 RAQP+P Sbjct 310 RAQPEP 315 >gi|240171371|ref|ZP_04750030.1| cytochrome aa3 controlling protein [Mycobacterium kansasii ATCC 12478] Length=318 Score = 409 bits (1050), Expect = 4e-112, Method: Compositional matrix adjust. Identities = 259/306 (85%), Positives = 274/306 (90%), Gaps = 0/306 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D PSLRVQR IAA VI+TQGGIAVTG IVRVTASGLGCPTWPQCFPGSFTPV VAEV Sbjct 12 DLLPDPSLRVQRAIAAAVIVTQGGIAVTGTIVRVTASGLGCPTWPQCFPGSFTPVAVAEV 71 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNRM+TFAVVIAAA AVL VTRARRR EVL YAWLMP STVVQA+IGGITV Sbjct 72 PRIHQAVEFGNRMITFAVVIAAAAAVLAVTRARRRPEVLVYAWLMPASTVVQAVIGGITV 131 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 RTGLLWWTV++HLLASMTMVWL+VLLYVKIG+PDDG+V LVV PLRALT LSA+NLAAV Sbjct 132 RTGLLWWTVSVHLLASMTMVWLSVLLYVKIGEPDDGIVRRLVVRPLRALTVLSAVNLAAV 191 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGTLVTAAGPHAGD+SP+RTVPRLKVEI TLVH+HSSLLV+YLALL+GLGFGLLAVGA Sbjct 192 LVTGTLVTAAGPHAGDKSPTRTVPRLKVEINTLVHLHSSLLVSYLALLVGLGFGLLAVGA 251 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 R IL RLAVLLALV QA VG QY GVP ALVA HVAGAAA TAATAALWASM ERA Sbjct 252 GRPILRRLAVLLALVFAQALVGIVQYHIGVPPALVATHVAGAAACTAATAALWASMRERA 311 Query 304 QPQPLQ 309 QPQPLQ Sbjct 312 QPQPLQ 317 >gi|254775768|ref|ZP_05217284.1| hypothetical protein MaviaA2_14020 [Mycobacterium avium subsp. avium ATCC 25291] Length=317 Score = 402 bits (1033), Expect = 3e-110, Method: Compositional matrix adjust. Identities = 250/305 (82%), Positives = 274/305 (90%), Gaps = 0/305 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D +PS+ VQR+IA VILTQGGIA+TGAIVRVTASGLGCPTWPQCFPGSF PV AEV Sbjct 11 DLLPNPSVGVQRLIAVAVILTQGGIAITGAIVRVTASGLGCPTWPQCFPGSFVPVPHAEV 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNRM+TFAVV+AAALAVL VTRARRR EVL YAWLMPVSTVVQA+IGGITV Sbjct 71 PRIHQAVEFGNRMITFAVVVAAALAVLAVTRARRRPEVLVYAWLMPVSTVVQAVIGGITV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 RTGLLWWTVAIHLL SMTMVWL+VLLYVKIG+PDDGV V +PLR LTALS +NLAAV Sbjct 131 RTGLLWWTVAIHLLTSMTMVWLSVLLYVKIGEPDDGVDQPRVPTPLRVLTALSGVNLAAV 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGTLVTAAGPHAGDRSP+RTVPRLKV++ TLVH+HSSLLVAYLAL++GLGFGLLAV A Sbjct 191 LVTGTLVTAAGPHAGDRSPTRTVPRLKVQVDTLVHLHSSLLVAYLALIVGLGFGLLAVRA 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 R IL+RL VLL L+ TQAAVGT QY+TGVPAALVA+HVAGAAA TAATAALWASM +RA Sbjct 251 ARPILLRLGVLLVLLCTQAAVGTAQYYTGVPAALVAVHVAGAAACTAATAALWASMRQRA 310 Query 304 QPQPL 308 Q +PL Sbjct 311 QAEPL 315 >gi|41407280|ref|NP_960116.1| hypothetical protein MAP1182c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395632|gb|AAS03499.1| hypothetical protein MAP_1182c [Mycobacterium avium subsp. paratuberculosis K-10] Length=311 Score = 401 bits (1030), Expect = 9e-110, Method: Compositional matrix adjust. Identities = 249/305 (82%), Positives = 273/305 (90%), Gaps = 0/305 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D +PS+ VQR+IA VILTQGGIA+TGAIVRVTASGLGCPTWPQCFPGSF PV AEV Sbjct 5 DLLPNPSVGVQRLIAVAVILTQGGIAITGAIVRVTASGLGCPTWPQCFPGSFVPVPHAEV 64 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNRM+TFAVV+AAALAVL VTRARRR EVL YAWLMPVSTVVQA+IGGITV Sbjct 65 PRIHQAVEFGNRMITFAVVVAAALAVLAVTRARRRPEVLVYAWLMPVSTVVQAVIGGITV 124 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 RTGLLWWTVAIHLL SMTMVWL+VLLYVKIG+PDDGV V +PLR LTALS +NLAAV Sbjct 125 RTGLLWWTVAIHLLTSMTMVWLSVLLYVKIGEPDDGVDQPRVPTPLRVLTALSGVNLAAV 184 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGTLVTAAGPHAGDRSP+RTVPRLKV++ TLVH+HSSLLVAYLAL++GLGFGLLAV A Sbjct 185 LVTGTLVTAAGPHAGDRSPTRTVPRLKVQVDTLVHLHSSLLVAYLALIVGLGFGLLAVRA 244 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 R IL+RL VLL L+ QAAVGT QY+TGVPAALVA+HVAGAAA TAATAALWASM +RA Sbjct 245 ARPILLRLGVLLVLLCAQAAVGTAQYYTGVPAALVAVHVAGAAACTAATAALWASMRQRA 304 Query 304 QPQPL 308 Q +PL Sbjct 305 QAEPL 309 >gi|15827233|ref|NP_301496.1| hypothetical protein ML0587 [Mycobacterium leprae TN] gi|221229711|ref|YP_002503127.1| hypothetical protein MLBr_00587 [Mycobacterium leprae Br4923] gi|2398713|emb|CAB16178.1| hypothetical protein MLCL536.34 [Mycobacterium leprae] gi|13092782|emb|CAC30095.1| putative membrane protein [Mycobacterium leprae] gi|219932818|emb|CAR70680.1| putative membrane protein [Mycobacterium leprae Br4923] Length=311 Score = 400 bits (1029), Expect = 1e-109, Method: Compositional matrix adjust. Identities = 224/269 (84%), Positives = 242/269 (90%), Gaps = 0/269 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D P LRVQR+IAA V+LTQGGI VTGAIVRVTASGLGCPTWPQCFPGSFTPV V EV Sbjct 12 DLIPDPGLRVQRIIAATVLLTQGGITVTGAIVRVTASGLGCPTWPQCFPGSFTPVAVTEV 71 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNR+V+ AVVIAA LAVL VTRARRRTEV YAWLMP+STV+QA+IGGITV Sbjct 72 PRIHQAVEFGNRVVSIAVVIAALLAVLTVTRARRRTEVRVYAWLMPISTVLQAVIGGITV 131 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVAIHLL SM MVWLAVLLYVK+G+PD G+ +E V+ PL ALTAL+A+NLA V Sbjct 132 LTGLLWWTVAIHLLTSMIMVWLAVLLYVKVGEPDGGIAYERVIRPLCALTALTAVNLAVV 191 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGTLVTAAGPHAGDRSPSRTVPRL+VEITTL H+HSSLLVAYLALL+GLGFGLLAVGA Sbjct 192 LVTGTLVTAAGPHAGDRSPSRTVPRLRVEITTLAHLHSSLLVAYLALLVGLGFGLLAVGA 251 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTG 272 TRAILVRLAVL ALV QAAVGTTQYFTG Sbjct 252 TRAILVRLAVLFALVCAQAAVGTTQYFTG 280 >gi|336458009|gb|EGO36996.1| uncharacterized protein required for cytochrome oxidase assembly [Mycobacterium avium subsp. paratuberculosis S397] Length=317 Score = 400 bits (1027), Expect = 2e-109, Method: Compositional matrix adjust. Identities = 249/305 (82%), Positives = 273/305 (90%), Gaps = 0/305 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D +PS+ VQR+IA VILTQGGIA+TGAIVRVTASGLGCPTWPQCFPGSF PV AEV Sbjct 11 DLLPNPSVGVQRLIAVAVILTQGGIAITGAIVRVTASGLGCPTWPQCFPGSFVPVPHAEV 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNRM+TFAVV+AAALAVL VTRARRR EVL YAWLMPVSTVVQA+IGGITV Sbjct 71 PRIHQAVEFGNRMITFAVVVAAALAVLAVTRARRRPEVLVYAWLMPVSTVVQAVIGGITV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 RTGLLWWTVAIHLL SMTMVWL+VLLYVKIG+PDDGV V +PLR LTALS +NLAAV Sbjct 131 RTGLLWWTVAIHLLTSMTMVWLSVLLYVKIGEPDDGVDQPRVPTPLRVLTALSGVNLAAV 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGTLVTAAGPHAGDRSP+RTVPRLKV++ TLVH+HSSLLVAYLAL++GLGFGLLAV A Sbjct 191 LVTGTLVTAAGPHAGDRSPTRTVPRLKVQVDTLVHLHSSLLVAYLALIVGLGFGLLAVRA 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 R IL+RL VLL L+ QAAVGT QY+TGVPAALVA+HVAGAAA TAATAALWASM +RA Sbjct 251 ARPILLRLGVLLVLLCAQAAVGTAQYYTGVPAALVAVHVAGAAACTAATAALWASMRQRA 310 Query 304 QPQPL 308 Q +PL Sbjct 311 QAEPL 315 >gi|118464120|ref|YP_882505.1| cytochrome aa3 controlling protein [Mycobacterium avium 104] gi|118165407|gb|ABK66304.1| cytochrome aa3 controlling protein [Mycobacterium avium 104] Length=317 Score = 399 bits (1024), Expect = 4e-109, Method: Compositional matrix adjust. Identities = 248/305 (82%), Positives = 272/305 (90%), Gaps = 0/305 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D +PS+ VQR+IA VILTQGGIA+TGAIVRVTASGLGCPTWPQCFPGSF PV AEV Sbjct 11 DLLPNPSVGVQRLIAVAVILTQGGIAITGAIVRVTASGLGCPTWPQCFPGSFVPVPHAEV 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 PR+HQAVEFGNRM+TFAVV+AAALAVL VTRARRR EVL YAWLMPVSTVVQA+IGGITV Sbjct 71 PRIHQAVEFGNRMITFAVVVAAALAVLAVTRARRRPEVLVYAWLMPVSTVVQAVIGGITV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 RTGLLWWTVAIHLL SMTMVWL+VLLYVKIG+PDDGV V +PLR LTALS +NLAAV Sbjct 131 RTGLLWWTVAIHLLTSMTMVWLSVLLYVKIGEPDDGVDQPRVPTPLRVLTALSGVNLAAV 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGTLVTAAGPHAGDRSP+RTVPRLKV++ TLVH+HSSLLVAYLAL++GLGFGLLAV A Sbjct 191 LVTGTLVTAAGPHAGDRSPTRTVPRLKVQVDTLVHLHSSLLVAYLALIVGLGFGLLAVRA 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 R IL+RL VLL L+ QA VGT QY+TGVPAALVA+HVAGAAA TAATAALWASM +RA Sbjct 251 ARPILLRLGVLLVLLCAQATVGTAQYYTGVPAALVAVHVAGAAACTAATAALWASMRQRA 310 Query 304 QPQPL 308 Q +PL Sbjct 311 QAEPL 315 >gi|111024140|ref|YP_707112.1| cytochrome oxidase assembly protein [Rhodococcus jostii RHA1] gi|110823670|gb|ABG98954.1| possible cytochrome oxidase assembly protein [Rhodococcus jostii RHA1] Length=320 Score = 375 bits (962), Expect = 6e-102, Method: Compositional matrix adjust. Identities = 203/283 (72%), Positives = 230/283 (82%), Gaps = 0/283 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 DR PSL VQRVIA VILTQGGIAVTGA+VRVTASGLGCPTWPQCFPGSF PV EV Sbjct 11 DRLPLPSLTVQRVIAFAVILTQGGIAVTGAVVRVTASGLGCPTWPQCFPGSFVPVGHGEV 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 VHQAVEFGNR++TF VV+AAAL VL VTRARRR EVL YAW+MP+ TVVQA+IGG+TV Sbjct 71 AVVHQAVEFGNRLLTFVVVVAAALIVLAVTRARRRREVLVYAWMMPLGTVVQAVIGGVTV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVA+HLLASM MVWLA ++Y KI +PDD +++ +PLR LTALS + LA V Sbjct 131 LTGLLWWTVAVHLLASMAMVWLATVMYAKICEPDDAPAIDVIPAPLRWLTALSGVALAGV 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 L GTLVT AGPHAGD+S R VPRL+VEI TLVH+H+ LLV YLALL+GL FGL AVGA Sbjct 191 LAAGTLVTGAGPHAGDKSLDRVVPRLEVEIVTLVHLHAQLLVGYLALLVGLCFGLYAVGA 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAA 286 TRA+ +R+ VLLALV QA +G Q+FT VPAALVA HVAGA Sbjct 251 TRAVKIRVQVLLALVVAQALIGLVQFFTNVPAALVAFHVAGAG 293 >gi|226306536|ref|YP_002766496.1| hypothetical protein RER_30490 [Rhodococcus erythropolis PR4] gi|226185653|dbj|BAH33757.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=320 Score = 373 bits (957), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 191/283 (68%), Positives = 222/283 (79%), Gaps = 0/283 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 DR PSL+ Q++IA IVILTQGGIAVTGA+VRVT SGLGCPTWPQCFPGSF PV +V Sbjct 10 DRLPLPSLKTQKIIAFIVILTQGGIAVTGAVVRVTDSGLGCPTWPQCFPGSFVPVGHGQV 69 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 +HQAVEFGNR++TF VVI AA VL VTRARRR EVL YAW+MP+ TVVQA+IGGITV Sbjct 70 AVIHQAVEFGNRLLTFLVVIVAAAIVLAVTRARRRKEVLVYAWMMPLGTVVQAVIGGITV 129 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVAIHL+ASM MVW+A ++Y KI +PD+ ++ PLR LTALS + LA V Sbjct 130 LTGLLWWTVAIHLVASMLMVWVATVMYAKIAEPDEATTLVVMPKPLRWLTALSGVALAGV 189 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LV GTLVT AGPHAGD+ RTVPRL+VEI TLVH+HS LLV YLAL++GL FGL AVG Sbjct 190 LVAGTLVTGAGPHAGDKGLDRTVPRLEVEIVTLVHLHSQLLVGYLALVVGLTFGLYAVGT 249 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAA 286 + A+ +RL VLL L+ QA +G QYFT VP LV +HVAGA Sbjct 250 SAAVKIRLKVLLGLILAQALIGVVQYFTDVPEVLVIMHVAGAG 292 >gi|229493484|ref|ZP_04387269.1| cytochrome aa3 controlling protein [Rhodococcus erythropolis SK121] gi|229319445|gb|EEN85281.1| cytochrome aa3 controlling protein [Rhodococcus erythropolis SK121] Length=312 Score = 372 bits (954), Expect = 5e-101, Method: Compositional matrix adjust. Identities = 189/283 (67%), Positives = 222/283 (79%), Gaps = 0/283 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 DR PSL+ Q++IA IVILTQGGIAVTGA+VRVT SGLGCPTWPQCFPGSF PV +V Sbjct 2 DRLPLPSLKTQKIIAFIVILTQGGIAVTGAVVRVTDSGLGCPTWPQCFPGSFVPVGHGQV 61 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 +HQAVEFGNR++TF VVI AA VL VTRARRR EVL YAW+MP+ TVVQA+IGGITV Sbjct 62 AVIHQAVEFGNRLLTFLVVIVAAAIVLAVTRARRRKEVLVYAWMMPLGTVVQAVIGGITV 121 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVAIHL+ASM MVW+A ++Y KI +PD+ ++ PLR LTALS + LA V Sbjct 122 LTGLLWWTVAIHLVASMLMVWVATVMYAKIAEPDEATTLVVMPKPLRWLTALSGVALAGV 181 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LV GTLVT AGPHAGD+ RTVPRL++EI TLVH+HS LLV YLAL++GL FGL AVG Sbjct 182 LVAGTLVTGAGPHAGDKGLDRTVPRLEIEIVTLVHLHSQLLVGYLALVVGLTFGLYAVGT 241 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAA 286 + A+ +RL VLL L+ Q+ +G QYFT VP LV +HVAGA Sbjct 242 SAAVKIRLKVLLGLILAQSLIGVVQYFTDVPEVLVIMHVAGAG 284 >gi|54025537|ref|YP_119779.1| putative cytochrome oxidase assembly protein [Nocardia farcinica IFM 10152] gi|54017045|dbj|BAD58415.1| putative cytochrome oxidase assembly protein [Nocardia farcinica IFM 10152] Length=324 Score = 371 bits (953), Expect = 6e-101, Method: Compositional matrix adjust. Identities = 194/268 (73%), Positives = 215/268 (81%), Gaps = 0/268 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D+ PSLRVQR+IA V+LTQ GI+VTGA+VRVTASGLGCPTWPQCFPGSFTPV V+EV Sbjct 11 DKLPLPSLRVQRLIALAVLLTQAGISVTGAVVRVTASGLGCPTWPQCFPGSFTPVGVSEV 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 VHQAVEFGNR++TF V + AAL VL VTRARRR EVL YAWLMP TVVQA+IGGITV Sbjct 71 AVVHQAVEFGNRLLTFLVTLCAALVVLAVTRARRRREVLVYAWLMPGGTVVQAVIGGITV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 +GLLWWTVA+HLLASM MVWLA +LY KIGQPDDG+ +PLR LT LS + LA V Sbjct 131 LSGLLWWTVAVHLLASMVMVWLAAVLYAKIGQPDDGIATVQAPAPLRWLTVLSGVALAGV 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LV GTLVT AGPHAGD+S R V RL+VEI TLVH+HS LLV YLALLIGLGFGL AVG Sbjct 191 LVAGTLVTGAGPHAGDKSIDRPVQRLEVEIVTLVHLHSQLLVGYLALLIGLGFGLYAVGI 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFT 271 TRA+ RL LLA+V QA VG QYFT Sbjct 251 TRAVRTRLFALLAVVCAQALVGIVQYFT 278 >gi|126435051|ref|YP_001070742.1| cytochrome oxidase assembly [Mycobacterium sp. JLS] gi|126234851|gb|ABN98251.1| cytochrome oxidase assembly [Mycobacterium sp. JLS] Length=342 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 223/302 (74%), Positives = 252/302 (84%), Gaps = 0/302 (0%) Query 9 PSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQ 68 PSLRVQR IA VILTQGGI+VTGAIVRVTASGLGCPTWPQCFPGSFTPV AEVP +HQ Sbjct 17 PSLRVQRAIAIAVILTQGGISVTGAIVRVTASGLGCPTWPQCFPGSFTPVPHAEVPGIHQ 76 Query 69 AVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLL 128 AVEFGNR++TF VV+ AA AVL VTRARRR EVL YAWLMP STV QA+IGG+TV TGLL Sbjct 77 AVEFGNRLITFLVVLTAAAAVLAVTRARRRREVLVYAWLMPASTVAQAVIGGVTVLTGLL 136 Query 129 WWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGT 188 WWTVAIHLL SM MVWLAVLL+VKIG+PD G + V PLR LT LSA+ L+AVLVTGT Sbjct 137 WWTVAIHLLVSMAMVWLAVLLFVKIGEPDGGTLVRTVPKPLRQLTLLSAVTLSAVLVTGT 196 Query 189 LVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAIL 248 LVT AGPHAGD+S + VPRL+VEITTLVH+HSSLL+AYL+LL+ LGF LLAV A R +L Sbjct 197 LVTGAGPHAGDKSIEQPVPRLQVEITTLVHLHSSLLIAYLSLLVALGFALLAVRAPRPVL 256 Query 249 VRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERAQPQPL 308 +RL VL+ + A Q VG Q+ TGVPAALVA+HVAGAAA TAATAALWASM +R + + L Sbjct 257 IRLGVLIGIAAAQGMVGAVQFVTGVPAALVAVHVAGAAACTAATAALWASMRQRTETEAL 316 Query 309 QR 310 +R Sbjct 317 ER 318 >gi|119868509|ref|YP_938461.1| cytochrome oxidase assembly [Mycobacterium sp. KMS] gi|119694598|gb|ABL91671.1| cytochrome oxidase assembly [Mycobacterium sp. KMS] Length=342 Score = 365 bits (937), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 223/302 (74%), Positives = 251/302 (84%), Gaps = 0/302 (0%) Query 9 PSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQ 68 PSLRVQR IA VILTQGGI+VTGAIVRVTASGLGCPTWPQCFPGSFTP+ AEVP +HQ Sbjct 17 PSLRVQRAIAVAVILTQGGISVTGAIVRVTASGLGCPTWPQCFPGSFTPIPHAEVPGIHQ 76 Query 69 AVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLL 128 AVEFGNR++TF VV+ AA AVL VTRARRR EVL YAWLMP STV QA+IGGITV TGLL Sbjct 77 AVEFGNRLITFLVVLTAAAAVLAVTRARRRREVLVYAWLMPASTVAQAVIGGITVLTGLL 136 Query 129 WWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGT 188 WWTVAIHLL SM MVWL+VLL+VKIG+PD G V PLR LTALSAL L+AVLVTGT Sbjct 137 WWTVAIHLLVSMAMVWLSVLLFVKIGEPDGGAPVRAVPKPLRQLTALSALTLSAVLVTGT 196 Query 189 LVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAIL 248 LVT AGPHAGD+S + VPRL+VEITTLVH+HSSLL+AYL+LL+ LGF L AV A R +L Sbjct 197 LVTGAGPHAGDKSIEQPVPRLQVEITTLVHLHSSLLIAYLSLLVALGFALWAVRAPRPVL 256 Query 249 VRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERAQPQPL 308 +RL VL+ + A Q VG Q+ TGVPAALVA+HVAGAAA TAATAALWASM +R + + L Sbjct 257 IRLGVLIGIAAAQGMVGAVQFVTGVPAALVAVHVAGAAACTAATAALWASMRQRTETEAL 316 Query 309 QR 310 +R Sbjct 317 ER 318 >gi|145224268|ref|YP_001134946.1| cytochrome oxidase assembly [Mycobacterium gilvum PYR-GCK] gi|145216754|gb|ABP46158.1| cytochrome oxidase assembly [Mycobacterium gilvum PYR-GCK] Length=318 Score = 364 bits (935), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 235/307 (77%), Positives = 258/307 (85%), Gaps = 0/307 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D PSLR QRVIAA VILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPV AEV Sbjct 12 DLFPEPSLRTQRVIAAAVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVPHAEV 71 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 +HQAVEFGNR++TF VV+ AA AV+ VTRARRR EVL YAWLMP STV QA+IGGITV Sbjct 72 AGIHQAVEFGNRLLTFLVVLTAAAAVIAVTRARRRREVLFYAWLMPASTVAQAIIGGITV 131 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVAIHLL SM MVWLAVLL+VKIG+PDDGV PLR LT LSA+ LAAV Sbjct 132 LTGLLWWTVAIHLLVSMAMVWLAVLLFVKIGEPDDGVPEPRAPKPLRQLTVLSAVTLAAV 191 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGT+VT AGPHAGD+SP R VPRL++EITTLVHMHSSLLVAYLALL+GLGFGLLAV + Sbjct 192 LVTGTMVTGAGPHAGDKSPDRPVPRLEIEITTLVHMHSSLLVAYLALLVGLGFGLLAVKS 251 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 + A+ RL V++ LVA Q +G Q+FTGVP ALVA+HVAGAAA TAATAALWASM ER Sbjct 252 SPAVRKRLGVVVVLVAAQGTLGAVQFFTGVPEALVALHVAGAAACTAATAALWASMRERT 311 Query 304 QPQPLQR 310 QP+PLQR Sbjct 312 QPEPLQR 318 >gi|169629838|ref|YP_001703487.1| hypothetical protein MAB_2754 [Mycobacterium abscessus ATCC 19977] gi|169241805|emb|CAM62833.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=328 Score = 362 bits (928), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 209/277 (76%), Positives = 231/277 (84%), Gaps = 3/277 (1%) Query 9 PSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQ 68 PSLR QR+IAA VILTQGGIAVTGA+VRVTASGLGCPTWPQCFPGSFTPV VAEVPR+HQ Sbjct 16 PSLRAQRLIAAAVILTQGGIAVTGAVVRVTASGLGCPTWPQCFPGSFTPVAVAEVPRIHQ 75 Query 69 AVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLL 128 AVEFGNRM++F VVI AALAVL VTRARRR EVL YAWLMP STV+QA+IGGITVRTGLL Sbjct 76 AVEFGNRMISFLVVITAALAVLAVTRARRRREVLVYAWLMPASTVLQAIIGGITVRTGLL 135 Query 129 WWTVAIHLLASMTMVWLAVLLYVKIGQPD---DGVVHELVVSPLRALTALSALNLAAVLV 185 WWTVAIHLL SM MVWLA LLYVK+G+PD D +PL LTAL + LAAVLV Sbjct 136 WWTVAIHLLVSMGMVWLATLLYVKVGEPDVVSDLPSVPPPPAPLSRLTALIGVTLAAVLV 195 Query 186 TGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATR 245 GTLVT AGPHAGD+S +R VPRL+VEITTLVH+H +LL+AYLALL+GLGFGL AVG TR Sbjct 196 AGTLVTGAGPHAGDKSITRVVPRLQVEITTLVHLHGTLLIAYLALLLGLGFGLAAVGVTR 255 Query 246 AILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHV 282 I VR V+LAL QA VG Q++TGVPA LVA+HV Sbjct 256 HIWVRFTVVLALTLAQALVGVVQFYTGVPAVLVALHV 292 >gi|108799396|ref|YP_639593.1| cytochrome oxidase assembly [Mycobacterium sp. MCS] gi|108769815|gb|ABG08537.1| cytochrome oxidase assembly [Mycobacterium sp. MCS] Length=342 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 222/302 (74%), Positives = 250/302 (83%), Gaps = 0/302 (0%) Query 9 PSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQ 68 PSLRVQR IA VILTQGGI+VTGAIVRVTASGLGCPTWPQCFPGSFTP+ AEVP +HQ Sbjct 17 PSLRVQRAIAVAVILTQGGISVTGAIVRVTASGLGCPTWPQCFPGSFTPIPHAEVPGIHQ 76 Query 69 AVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLL 128 AVEFGNR++TF VV+ AA AVL VTRARRR EVL YAWLMP STV QA+IGGITV TGLL Sbjct 77 AVEFGNRLITFLVVLTAAAAVLAVTRARRRREVLVYAWLMPASTVAQAVIGGITVLTGLL 136 Query 129 WWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGT 188 W TVAIHLL SM MVWL+VLL+VKIG+PD G V PLR LTALSAL L+AVLVTGT Sbjct 137 WLTVAIHLLVSMAMVWLSVLLFVKIGEPDGGAPVRAVPKPLRQLTALSALTLSAVLVTGT 196 Query 189 LVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAIL 248 LVT AGPHAGD+S + VPRL+VEITTLVH+HSSLL+AYL+LL+ LGF L AV A R +L Sbjct 197 LVTGAGPHAGDKSIEQPVPRLQVEITTLVHLHSSLLIAYLSLLVALGFALWAVRAPRPVL 256 Query 249 VRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERAQPQPL 308 +RL VL+ + A Q VG Q+ TGVPAALVA+HVAGAAA TAATAALWASM +R + + L Sbjct 257 IRLGVLIGIAAAQGMVGAVQFVTGVPAALVAVHVAGAAACTAATAALWASMRQRTETEAL 316 Query 309 QR 310 +R Sbjct 317 ER 318 >gi|226366379|ref|YP_002784162.1| hypothetical protein ROP_69700 [Rhodococcus opacus B4] gi|226244869|dbj|BAH55217.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=320 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 201/283 (72%), Positives = 228/283 (81%), Gaps = 0/283 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 DR PS VQRVIA VILTQGGIAVTGA+VRVTASGLGCPTWPQCFPGSF PV EV Sbjct 11 DRLPLPSRTVQRVIAFAVILTQGGIAVTGAVVRVTASGLGCPTWPQCFPGSFVPVGHGEV 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 +HQAVEFGNR++TF VV+AAAL VL VTRARRR EVL YAW+MP+ TVVQA+IGG+TV Sbjct 71 AVIHQAVEFGNRLLTFVVVVAAALIVLAVTRARRRREVLVYAWMMPLGTVVQAVIGGVTV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVA+HLLASM MVWLA ++Y KI +PDD +++ +PLR LTALSA+ LA V Sbjct 131 LTGLLWWTVAVHLLASMAMVWLATVMYAKICEPDDAPAFDVIPAPLRWLTALSAVALAGV 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 L GTLVT AGPHAGD+S R VPRL+VEI TLVH+H+ LLV YLALL+GL FGL AVGA Sbjct 191 LAAGTLVTGAGPHAGDKSLDRVVPRLEVEIVTLVHLHAQLLVGYLALLVGLCFGLYAVGA 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAA 286 RA+ VR+ VLLALV QA +G Q+FT VPA LVA HVAGA Sbjct 251 ARAVKVRIQVLLALVVAQALIGLVQFFTDVPAVLVAFHVAGAG 293 >gi|315444603|ref|YP_004077482.1| protein required for cytochrome oxidase assembly [Mycobacterium sp. Spyr1] gi|315262906|gb|ADT99647.1| uncharacterized protein required for cytochrome oxidase assembly [Mycobacterium sp. Spyr1] Length=318 Score = 355 bits (911), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 232/307 (76%), Positives = 255/307 (84%), Gaps = 0/307 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D PSLR QRVIAA VILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPV AEV Sbjct 12 DLFPEPSLRTQRVIAAAVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVPHAEV 71 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 +HQAVEFGNR++TF VV+ AA AV+ VTRARRR EVL YAWLMP STV QA+IGGITV Sbjct 72 AGIHQAVEFGNRLLTFLVVLTAAAAVIAVTRARRRREVLFYAWLMPASTVAQAIIGGITV 131 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVAIHLL SM MVWLAVLL+VKIG+PD GV PLR LT LSA+ LAAV Sbjct 132 LTGLLWWTVAIHLLVSMAMVWLAVLLFVKIGEPDGGVPEPRAPKPLRQLTVLSAVTLAAV 191 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGT+VT AGPHAGD+SP R VPRL++EITTLVHMHSSLLVAYLALL+GLGFGLLAV + Sbjct 192 LVTGTMVTGAGPHAGDKSPDRPVPRLQIEITTLVHMHSSLLVAYLALLVGLGFGLLAVKS 251 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 + + RL V++ LVA Q +G Q+FTGVP ALVA+HVAGAAA TAATAALWASM ER Sbjct 252 SPTVRKRLGVVVVLVAAQGTLGAVQFFTGVPEALVALHVAGAAACTAATAALWASMRERT 311 Query 304 QPQPLQR 310 Q +PLQR Sbjct 312 QAEPLQR 318 >gi|120403710|ref|YP_953539.1| cytochrome oxidase assembly [Mycobacterium vanbaalenii PYR-1] gi|119956528|gb|ABM13533.1| cytochrome oxidase assembly [Mycobacterium vanbaalenii PYR-1] Length=318 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 234/307 (77%), Positives = 258/307 (85%), Gaps = 0/307 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 D PS RVQR+IA VILTQGGI+VTGAIVRVTASGLGCPTWPQCFPGSFTPV EV Sbjct 12 DLLPEPSRRVQRMIAFAVILTQGGISVTGAIVRVTASGLGCPTWPQCFPGSFTPVPHPEV 71 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 +HQAVEFGNR++TF VV+ AA AVL VTRARRR EVL YAWLMP STV QA+IGGITV Sbjct 72 AGIHQAVEFGNRLLTFLVVLTAAAAVLAVTRARRRHEVLVYAWLMPASTVAQAIIGGITV 131 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVAIHLL SM MVWLAVLLYVKIG+PD+GVV PLR LT LSAL LAAV Sbjct 132 LTGLLWWTVAIHLLVSMAMVWLAVLLYVKIGEPDNGVVAVRAPKPLRQLTVLSALTLAAV 191 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGT+VT AGPHAGD+S R VPRL+VEITTLVH+HSSLLVAYLALL+GLGFGLLAV Sbjct 192 LVTGTMVTGAGPHAGDKSLDRPVPRLEVEITTLVHLHSSLLVAYLALLVGLGFGLLAVRT 251 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 + ++ RLAV++ LVA Q A+G TQ+ GVPAALVA+HVAGAAA TAATAALWASM ERA Sbjct 252 SGDVMKRLAVVVVLVAAQGALGATQFVLGVPAALVALHVAGAAACTAATAALWASMRERA 311 Query 304 QPQPLQR 310 +P+PLQR Sbjct 312 EPEPLQR 318 >gi|333919566|ref|YP_004493147.1| cytochrome aa3 controlling protein [Amycolicicoccus subflavus DQS3-9A1] gi|333481787|gb|AEF40347.1| Cytochrome aa3 controlling protein [Amycolicicoccus subflavus DQS3-9A1] Length=323 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 201/299 (68%), Positives = 235/299 (79%), Gaps = 4/299 (1%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 DR PSLR QRV+A +VILTQ GIAVTG++VRVTASGLGCPTWPQCFPGSFTPV V EV Sbjct 11 DRLPMPSLRTQRVVAILVILTQAGIAVTGSVVRVTASGLGCPTWPQCFPGSFTPVPVEEV 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 +HQ VEFGNR++TF VV AA VLVVTRARRR EV+AYAW+MP+ST++QA+IGGITV Sbjct 71 ATLHQLVEFGNRLLTFVVVAAAIAVVLVVTRARRRREVIAYAWVMPLSTLMQAVIGGITV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVA+HLL SM MVW+AV+LY KI +PD+GV H + PLR+LTAL+A+ L V Sbjct 131 LTGLLWWTVAVHLLVSMAMVWVAVVLYNKISEPDEGVDHPVAPRPLRSLTALTAVALVGV 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LV GT+VT AGPHAGD V RL+VEI TLVH+HS L VAY+ALLIGL F L AV A Sbjct 191 LVAGTMVTGAGPHAGDPD----VDRLEVEIVTLVHLHSQLTVAYVALLIGLIFALYAVAA 246 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGER 302 R +L L ++A+ A QAA+G QYF VPA L+ H+AGAAA TAATAALW+SM R Sbjct 247 PRNVLRNLKFVIAIAAAQAALGIVQYFMQVPAYLIPFHIAGAAACTAATAALWSSMSAR 305 >gi|312139621|ref|YP_004006957.1| cytochrome oxidase assembly protein [Rhodococcus equi 103S] gi|311888960|emb|CBH48273.1| putative cytochrome oxidase assembly protein [Rhodococcus equi 103S] Length=318 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 181/279 (65%), Positives = 216/279 (78%), Gaps = 0/279 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 +R PSL VQ+ IA VI+TQGGIAVTG++VRVTASGLGC TWPQC+PGSF P + Sbjct 5 NRLPLPSLAVQKWIAIAVIVTQGGIAVTGSVVRVTASGLGCTTWPQCYPGSFVPTGDSTA 64 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 P +HQ +EFGNR++TF VV AA VL VTRA RR EVL YAWLMP+STV QA++GGITV Sbjct 65 PWMHQFIEFGNRLLTFLVVATAAAVVLAVTRAGRRREVLTYAWLMPLSTVAQAVLGGITV 124 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVA+HLL SM MVWL+V+LY KI QPDDGV + LR LTAL+ + LA Sbjct 125 LTGLLWWTVALHLLVSMAMVWLSVMLYHKIDQPDDGVEVTTLPKQLRWLTALTGVALAGT 184 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LV GT+VT AGPHAGD++P RTV RL ++IT LVH+H+ LLVAYLALL+GLGF L AVGA Sbjct 185 LVAGTMVTGAGPHAGDKNPERTVERLDLDITNLVHLHAELLVAYLALLVGLGFALYAVGA 244 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHV 282 + A+ +RL V++ LV QA VG Q++T VPAALV IHV Sbjct 245 SAAVKLRLKVVVGLVVAQACVGLVQFWTHVPAALVTIHV 283 >gi|325676703|ref|ZP_08156377.1| cytochrome oxidase assembly protein [Rhodococcus equi ATCC 33707] gi|325552485|gb|EGD22173.1| cytochrome oxidase assembly protein [Rhodococcus equi ATCC 33707] Length=324 Score = 315 bits (807), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 180/279 (65%), Positives = 214/279 (77%), Gaps = 0/279 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 +R PSL VQ+ IA VI+TQGGIAVTG++VRVTASGLGC TWPQC+PGSF P + Sbjct 11 NRLPLPSLAVQKWIAIAVIVTQGGIAVTGSVVRVTASGLGCTTWPQCYPGSFVPTGDSTA 70 Query 64 PRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 P +HQ +EFGNR++TF VV AA VL VTRA RR EVL YAWLMP+STV QA++GGITV Sbjct 71 PWMHQFIEFGNRLLTFLVVATAAAVVLAVTRAGRRREVLTYAWLMPLSTVAQAVLGGITV 130 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 TGLLWWTVA+HLL SM MVWL+V+LY KI QPDDGV + L LTAL+ + LA Sbjct 131 LTGLLWWTVALHLLVSMAMVWLSVMLYHKIDQPDDGVEVTTLPKQLSWLTALTGVALAGT 190 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LV GT+VT AGPHAGD++P RTV RL ++IT LVH+H+ LLVAYLALL+GLGF L AVGA Sbjct 191 LVAGTMVTGAGPHAGDKNPERTVERLDLDITNLVHLHAELLVAYLALLVGLGFALYAVGA 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHV 282 + A +RL V++ LV QA VG Q++T VPAALV IHV Sbjct 251 SAAAKLRLKVVVGLVVAQACVGLVQFWTHVPAALVTIHV 289 >gi|3560511|gb|AAC82554.1| unknown [Mycobacterium smegmatis str. MC2 155] Length=236 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 163/236 (70%), Positives = 184/236 (78%), Gaps = 4/236 (1%) Query 76 MVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLLWWTVAIH 135 M+TF VV+ AA AVL VTRARRR EVL YAWLMP STVVQA+IGGITV TGLLWWTVAIH Sbjct 1 MITFLVVLTAAAAVLAVTRARRRREVLVYAWLMPASTVVQAVIGGITVLTGLLWWTVAIH 60 Query 136 LLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGTLVTAAGP 195 L+ASM MVWLAVLL+VKIGQPDDG+ V +PLR LT LSA+ LAAVLVT A Sbjct 61 LIASMVMVWLAVLLFVKIGQPDDGITRTRVPAPLRHLTVLSAVALAAVLVTARWSPAQAA 120 Query 196 HAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAILVRLAVLL 255 G + RTVPRL+VEITTLVHMHSSLL+AYL+L+I LGFGL A GA R ++VRL VL+ Sbjct 121 R-GRQEHRRTVPRLQVEITTLVHMHSSLLIAYLSLVIALGFGLAATGAARPVMVRLGVLV 179 Query 256 ALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGER---AQPQPL 308 AL+ Q VG Q++TGVPAALVA+HVAGA TAATAALWASM ER A P P+ Sbjct 180 ALICAQGLVGVVQFYTGVPAALVAVHVAGAGLCTAATAALWASMRERTPAAVPAPV 235 >gi|466899|gb|AAA17144.1| B1496_F2_61 [Mycobacterium leprae] Length=223 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 161/192 (84%), Positives = 175/192 (92%), Gaps = 0/192 (0%) Query 81 VVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLLWWTVAIHLLASM 140 +VIAA LAVL VTRARRRTEV YAWLMP+STV+QA+IGGITV TGLLWWTVAIHLL SM Sbjct 1 MVIAALLAVLTVTRARRRTEVRVYAWLMPISTVLQAVIGGITVLTGLLWWTVAIHLLTSM 60 Query 141 TMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGTLVTAAGPHAGDR 200 MVWLAVLLYVK+G+PD G+ +E V+ PL ALTAL+A+NLA VLVTGTLVTAAGPHAGDR Sbjct 61 IMVWLAVLLYVKVGEPDGGIAYERVIRPLCALTALTAVNLAVVLVTGTLVTAAGPHAGDR 120 Query 201 SPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAILVRLAVLLALVAT 260 SPSRTVPRL+VEITTL H+HSSLLVAYLALL+GLGFGLLAVGATRAILVRLAVL ALV Sbjct 121 SPSRTVPRLRVEITTLAHLHSSLLVAYLALLVGLGFGLLAVGATRAILVRLAVLFALVCA 180 Query 261 QAAVGTTQYFTG 272 QAAVGTTQYFTG Sbjct 181 QAAVGTTQYFTG 192 >gi|317508246|ref|ZP_07965926.1| cytochrome oxidase assembly protein [Segniliparus rugosus ATCC BAA-974] gi|316253421|gb|EFV12811.1| cytochrome oxidase assembly protein [Segniliparus rugosus ATCC BAA-974] Length=309 Score = 268 bits (686), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 159/296 (54%), Positives = 191/296 (65%), Gaps = 6/296 (2%) Query 8 SPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVH 67 P+L+ QR+ A I ++ QG I VTGA+VRVT+SGLGCPTWP CF S P VP H Sbjct 13 QPTLQQQRLAALICLVAQGLITVTGAVVRVTSSGLGCPTWPGCFRDSPIPRPDLLVPWQH 72 Query 68 QAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGL 127 QA+EFGNR++T V IAA ++VTRARRR EVL W M T+ QA+IGG+TV GL Sbjct 73 QAIEFGNRLLTGLVSIAAIAVAVLVTRARRRREVLILGWAMIGGTLAQAVIGGVTVLAGL 132 Query 128 LWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTG 187 WWTVAIHL+ASM MVWLA LL VK+ QPDD LRA A+S + LA LV G Sbjct 133 KWWTVAIHLVASMVMVWLATLLVVKVRQPDDAPTSGEANRLLRACAAVSGVLLALALVAG 192 Query 188 TLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVG--ATR 245 T VT AGPHAGD+SP++ V RL ++I L H HS L+ YLA LI L + + A R Sbjct 193 TFVTGAGPHAGDKSPAKPVERLDLKIPELAHWHSMLVFCYLASLIALVWFARSANPQARR 252 Query 246 AILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGE 301 A LV + LA Q VG QY+ GVPA LV +HVAGA VT+ATA +WA E Sbjct 253 AALVAVGFALA----QGTVGEVQYWQGVPALLVVLHVAGAVVVTSATALVWARASE 304 >gi|296140214|ref|YP_003647457.1| cytochrome oxidase assembly protein [Tsukamurella paurometabola DSM 20162] gi|296028348|gb|ADG79118.1| cytochrome oxidase assembly [Tsukamurella paurometabola DSM 20162] Length=326 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 148/300 (50%), Positives = 195/300 (65%), Gaps = 1/300 (0%) Query 4 DRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEV 63 DR PS+R QR++A +L+Q IAVTG++VRVT SGLGCPTWP+CF S P+ +V Sbjct 13 DRLPMPSMRTQRLLALAALLSQALIAVTGSVVRVTGSGLGCPTWPKCFDDSLLPIPQEDV 72 Query 64 PRVHQAVEFGNRMVTFAVVIAAALA-VLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGIT 122 P HQA+EFGNR + +V+ ++A VL VTRARRR E+L YAW++P ST Q ++GGIT Sbjct 73 PWWHQAIEFGNRQIAVWIVVTTSIAIVLAVTRARRRREILVYAWILPFSTFAQGILGGIT 132 Query 123 VRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAA 182 V TGL WW V H+L S MVW+A LY K+ +PDDG E + R L A SA+ ++ Sbjct 133 VLTGLRWWVVGAHMLVSCAMVWIAATLYAKVAEPDDGAEIEAAPAGARTLVAASAVVMSL 192 Query 183 VLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVG 242 VL G +VTAAGPHAGDR+ + + RL I L H L+ Y+A+LI + Sbjct 193 VLAAGVVVTAAGPHAGDRTNPKAIDRLDASIPLLSLTHGLLVALYVAILIAAAVLIYRGP 252 Query 243 ATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGER 302 ++ A+ RL +L A+VA Q+ +G QYFTGVPA LV +HVAGA +V A TA L+ M R Sbjct 253 SSEAVRRRLKILFAVVAAQSLIGVVQYFTGVPALLVVLHVAGAMSVIAETAILYRLMSPR 312 >gi|237785548|ref|YP_002906253.1| cytochrome aa3 controlling protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758460|gb|ACR17710.1| cytochrome aa3 controlling protein [Corynebacterium kroppenstedtii DSM 44385] Length=347 Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 139/294 (48%), Positives = 190/294 (65%), Gaps = 4/294 (1%) Query 14 QRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQAVEFG 73 QR+ A +++ Q GI TG+IVRVTASGLGCPTWP+C PGS P +P VHQ +EFG Sbjct 56 QRLFALALLIAQIGITFTGSIVRVTASGLGCPTWPECQPGSLVPES-GSIPWVHQLIEFG 114 Query 74 NRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLLWWTVA 133 NR +TF + I LA L V+RA+RR+E++ A++ + + QA+IGGI+V L WW VA Sbjct 115 NRTLTFVLTIFVILAFLAVSRAKRRSEIIILAFIQGIGVIAQAVIGGISVHLDLAWWMVA 174 Query 134 IHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGTLVTAA 193 +H L SM +VWLA LL+V+I +PDDG + PLR L +S++ + L+TGT+VT A Sbjct 175 LHFLPSMVLVWLAALLWVRIDEPDDGKAQVMYPQPLRWLALMSSIAMGITLITGTMVTGA 234 Query 194 GPHAGDRS-PSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAILVRLA 252 GPHAGD P+ + RL++ + + H+H+ + YL L+ GL FGLL V A RAI+ Sbjct 235 GPHAGDSEVPADS--RLQIPLDLMAHLHAHAMYLYLGLVAGLLFGLLTVRADRAIMKTTQ 292 Query 253 VLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERAQPQ 306 L+ L+ QA VG QY+ GVP V +HV G+ + A TA LWA RA P+ Sbjct 293 WLVVLIVLQAGVGIVQYWLGVPRWTVPLHVIGSGVICAVTAVLWAQGKRRAAPR 346 >gi|260578761|ref|ZP_05846668.1| cytochrome aa3 controlling protein [Corynebacterium jeikeium ATCC 43734] gi|258603059|gb|EEW16329.1| cytochrome aa3 controlling protein [Corynebacterium jeikeium ATCC 43734] Length=353 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 139/292 (48%), Positives = 189/292 (65%), Gaps = 6/292 (2%) Query 8 SPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVH 67 +P++R QR+ A I++ Q GI TG++VRVT SGLGC TWPQC PGS PV P +H Sbjct 38 APTIRRQRLFAIILLACQTGITFTGSLVRVTGSGLGCDTWPQCHPGSLFPVA-GSAPWIH 96 Query 68 QAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGL 127 Q +EFGNR +TF +++AA + + V RA RR+ +L A++ + +VQA++GGITV L Sbjct 97 QLIEFGNRTLTFVLIVAALVCFIAVVRAARRSAILHLAFIQGIGIIVQAVLGGITVHMDL 156 Query 128 LWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTG 187 +WWTVA+H L SM +V+LA L V+IG+PDDG + L+ PLR LT SAL+LA VL+TG Sbjct 157 MWWTVALHFLPSMLLVFLAAKLVVRIGEPDDGEMQPLMPRPLRILTDGSALSLAVVLITG 216 Query 188 TLVTAAGPHAGDRS--PSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATR 245 T+VT AGPHAGD + P RL+V + + H+H+ + YL L +GL G+ A+ Sbjct 217 TMVTGAGPHAGDEAILPEH---RLQVPLIDMAHVHAGFMYLYLGLTVGLLAGVFALNLEH 273 Query 246 AILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWA 297 I ++A + QA VG QY+ GVP V IHV G+ TAAT LWA Sbjct 274 RIKTASYWVIAAIILQAIVGIMQYWLGVPRWSVPIHVIGSGLTTAATGFLWA 325 >gi|68536066|ref|YP_250771.1| cytochrome aa3 controlling protein [Corynebacterium jeikeium K411] gi|68263665|emb|CAI37153.1| cytochrome aa3 controlling protein [Corynebacterium jeikeium K411] Length=353 Score = 255 bits (651), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 142/292 (49%), Positives = 186/292 (64%), Gaps = 6/292 (2%) Query 8 SPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVH 67 +P++R QR+ A I++ Q GI TG++VRVT SGLGC TWPQC PGS PV P VH Sbjct 38 APTIRRQRLFAIILLACQTGITFTGSLVRVTGSGLGCDTWPQCHPGSLFPVA-GSAPWVH 96 Query 68 QAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGL 127 Q +EFGNR +TF ++IA L + V RA RR+ +L A+ + +VQA+ GGITV L Sbjct 97 QLIEFGNRTLTFVLIIAVLLCFIAVVRAARRSAILHLAFAQGIGIIVQAVWGGITVHMDL 156 Query 128 LWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTG 187 +WWTVA+H L SM +V+LA L V+IG+PDDG + L+ PLR LT SAL+LA VL+TG Sbjct 157 MWWTVALHFLPSMLLVFLAAKLVVRIGEPDDGEMQPLMPRPLRILTDGSALSLAIVLITG 216 Query 188 TLVTAAGPHAGDRS--PSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATR 245 TLVT AGPHAGD + P RL+V + + H+H+ + YL L +GL G+ A+ Sbjct 217 TLVTGAGPHAGDEAILPEH---RLQVPLIDMAHIHAGFMYLYLGLTVGLLAGVFALNLEH 273 Query 246 AILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWA 297 I ++A + QA VG QY+ GVP V IHV G+ TAAT LWA Sbjct 274 RIKTASYWVIAAIILQAIVGIMQYWLGVPRWSVPIHVIGSGLTTAATGFLWA 325 >gi|319947905|ref|ZP_08022090.1| hypothetical protein ES5_01206 [Dietzia cinnamea P4] gi|319438448|gb|EFV93383.1| hypothetical protein ES5_01206 [Dietzia cinnamea P4] Length=331 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 156/297 (53%), Positives = 196/297 (66%), Gaps = 2/297 (0%) Query 2 PYDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVA 61 P R PSLRVQ+ IA ++ Q GI TG VRVTASGLGC TWP+C SF PV A Sbjct 24 PLSRLPMPSLRVQKGIALANVIAQIGIMTTGVTVRVTASGLGCETWPRCNQDSFVPVPGA 83 Query 62 EVPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGI 121 P +HQA+EFGNR++TF +V AA +L V RA RRTE+ A MP+ V QA+IGGI Sbjct 84 G-PAIHQAIEFGNRLLTFVLVAVAAALILAVFRAGRRTELKVLALAMPLGIVAQAVIGGI 142 Query 122 TVRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLA 181 TV GL+WWTVA+HLL SM + W+A +LYV+IG+ D ++ PL LTALSA+ LA Sbjct 143 TVLAGLVWWTVALHLLPSMLLAWVAAVLYVRIGEDDTAPPRRVMPRPLAWLTALSAVLLA 202 Query 182 AVLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAV 241 VL TGT+VT AGPHAGD + RL++ I LVH H+ L++ Y+ LLIGL GL+A+ Sbjct 203 GVLATGTMVTGAGPHAGD-ARIEAADRLQLPIQWLVHFHAELMIGYVCLLIGLLAGLIAL 261 Query 242 GATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWAS 298 + R A+L+ L+A QA +G TQY GVP LV HV A A+TA T ALWA+ Sbjct 262 RTEGPAIRRCAILIGLIAAQAVIGITQYQLGVPEVLVVAHVTLAGAITAVTGALWAA 318 >gi|334563129|ref|ZP_08516120.1| cytochrome aa3 controlling protein [Corynebacterium bovis DSM 20582] Length=357 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 138/292 (48%), Positives = 184/292 (64%), Gaps = 3/292 (1%) Query 6 AVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPR 65 AV+P R QRV +++ Q GI TGAIVRVT SGLGCPTWP+C PGS PV P Sbjct 41 AVAPLAR-QRVYGIVLLCAQVGITFTGAIVRVTGSGLGCPTWPECQPGSLIPVG-GTTPW 98 Query 66 VHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRT 125 VHQA+EFGNR++TF V +AA L V RA RR ++ A++ + +VQA++GGI+V Sbjct 99 VHQAIEFGNRLLTFVVAVAAIACFLAVVRAGRRNSIIDLAFVQGIGIIVQAVLGGISVHL 158 Query 126 GLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLV 185 GL WW+VA+H L SM +V++A +L KIG+PDDG + PLR L SA+ L LV Sbjct 159 GLAWWSVAMHFLPSMALVFMAAVLVTKIGEPDDGRKRPFMPRPLRYLATGSAVLLGVTLV 218 Query 186 TGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATR 245 TGT+ T AGPHAGD + R RL++ + + ++H+ + YL + IGL GL+AV Sbjct 219 TGTMTTGAGPHAGD-AAVRPEDRLQIPLIEIANLHAHGMYIYLGVTIGLLAGLIAVKVDV 277 Query 246 AILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWA 297 + +L+A + QAAVG QY+ GVP V +HV GA VTA T +WA Sbjct 278 PLRRATLLLIAGIVVQAAVGIVQYWLGVPRWTVPLHVVGAGIVTAGTGFVWA 329 >gi|296394476|ref|YP_003659360.1| cytochrome oxidase assembly [Segniliparus rotundus DSM 44985] gi|296181623|gb|ADG98529.1| cytochrome oxidase assembly [Segniliparus rotundus DSM 44985] Length=325 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/294 (51%), Positives = 181/294 (62%), Gaps = 2/294 (0%) Query 9 PSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQ 68 PSL+ Q + A ++TQG I VTGAIVRVT+SGLGCPTWP CFP S TP A VP HQ Sbjct 14 PSLQQQWLAALACLVTQGLITVTGAIVRVTSSGLGCPTWPTCFPDSMTPRADALVPWQHQ 73 Query 69 AVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLL 128 A+EFGNR +T V +AA L ++VT ARR+ VL W M T+ QA+IGGITV GL Sbjct 74 AIEFGNRTLTGLVSLAAILVAVLVTLARRKRPVLVLGWAMIGGTLAQAVIGGITVLAGLK 133 Query 129 WWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGT 188 WWTVAIHL+ASM M+W A LL ++ +PDD + LR A+S LA VLV GT Sbjct 134 WWTVAIHLVASMVMIWFATLLVARVREPDDDLPAGRADQRLRTSAAVSGALLALVLVAGT 193 Query 189 LVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAIL 248 LVT AGPHAGD+S +R V RL V I L HS+L++ YL L L + A A Sbjct 194 LVTGAGPHAGDKSTTRPVARLDVPIPELARWHSALVLCYLVSLAALSW--FARSANPPTR 251 Query 249 VRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGER 302 + L Q A+G QY+ GVP+ LV +HV GA V +ATA +WA R Sbjct 252 RAARIAAGLALAQGALGEAQYWQGVPSLLVVLHVGGAVLVASATAFVWARTTTR 305 >gi|340794434|ref|YP_004759897.1| cytochrome aa3 controlling protein [Corynebacterium variabile DSM 44702] gi|340534344|gb|AEK36824.1| cytochrome aa3 controlling protein [Corynebacterium variabile DSM 44702] Length=352 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 138/302 (46%), Positives = 188/302 (63%), Gaps = 3/302 (0%) Query 9 PSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQ 68 P+++ Q + A I+++ QGGI TGA+VRVT SGLGCPTWPQC PGS P P +HQ Sbjct 33 PTVQRQWLYAVILMVCQGGITFTGAMVRVTGSGLGCPTWPQCQPGSLVPEA-GSAPALHQ 91 Query 69 AVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLL 128 A+EFGNRM+TF V +AA LA L V RA RR+ +L A+L + +VQA++GGITV L Sbjct 92 AIEFGNRMLTFVVSLAAILAFLAVLRAARRSSILHNAFLQGIGIIVQAVLGGITVHMDLA 151 Query 129 WWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGT 188 WW V H L SM + + A ++ VK+ +PD + + LR T +S ++L VLVTGT Sbjct 152 WWMVMAHFLPSMLLTFFAAVMVVKVREPDGAPRRTGMPTALRWATWISTISLMVVLVTGT 211 Query 189 LVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAIL 248 + T++GPHAGD + + RL++ + + ++H+ + YL + IGL GL AV A R IL Sbjct 212 MTTSSGPHAGDEAIKES-DRLQISLIEMANLHAHAMYLYLGVTIGLLAGLFAVRADRRIL 270 Query 249 VRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERAQPQPL 308 +L+ + QAAVG QY GVP V +HV G+A +TAAT LW SM R L Sbjct 271 KASGLLIVGIVLQAAVGILQYNMGVPRWTVPLHVIGSAILTAATGLLW-SMRFRRGEDTL 329 Query 309 QR 310 R Sbjct 330 DR 331 >gi|213965556|ref|ZP_03393750.1| cytochrome aa3 controlling protein [Corynebacterium amycolatum SK46] gi|213951715|gb|EEB63103.1| cytochrome aa3 controlling protein [Corynebacterium amycolatum SK46] Length=337 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 138/285 (49%), Positives = 180/285 (64%), Gaps = 6/285 (2%) Query 14 QRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVPRVHQAVEFG 73 Q++ A +V++ Q IAVTG+IVRVT SGLGC +WP+C PGSF PV E +HQ +EFG Sbjct 21 QKLYALLVLIAQAAIAVTGSIVRVTGSGLGCASWPECHPGSFVPVA-GEAEMLHQIIEFG 79 Query 74 NRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITVRTGLLWWTVA 133 NR++TF +V L L V R RR E+ A+L + +VQA+IGGI+V L W+ VA Sbjct 80 NRLLTFVLVALTLLLFLSVMRVGRRKEIKLLAFLNGLGVIVQAVIGGISVWVDLKWYAVA 139 Query 134 IHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAVLVTGTLVTAA 193 +H L SM +VWLA +L+VKI +PDDG + LR L A S L L L+TGT+VT A Sbjct 140 LHFLPSMILVWLAGMLFVKISEPDDGTATRMYPRYLRYLAAASGLALTMTLITGTMVTGA 199 Query 194 GPHAGDRS--PSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGATRAILVRL 251 GPHAGD S P RL++ I L H+H+ + YL L+IGL FGLLA A + Sbjct 200 GPHAGDASVLPED---RLQLPIVDLAHIHAGFMYLYLGLVIGLIFGLLASEAFAPVRKIA 256 Query 252 AVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALW 296 VL+ + Q VG QY++GVP ALV +HVAG+ TA TA L+ Sbjct 257 LVLVVFILAQGVVGMIQYWSGVPEALVPVHVAGSGICTALTAVLF 301 >gi|311739479|ref|ZP_07713314.1| cytochrome oxidase assembly protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305295|gb|EFQ81363.1| cytochrome oxidase assembly protein [Corynebacterium pseudogenitalium ATCC 33035] Length=342 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 133/295 (46%), Positives = 185/295 (63%), Gaps = 2/295 (0%) Query 3 YDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAE 62 + + +P+L+ QR+IA I++L QGGI V+G+IVRVT SGLGCPTWP+C PGS P+ A Sbjct 13 FFKEAAPTLQQQRLIALILLLCQGGITVSGSIVRVTGSGLGCPTWPECQPGSLVPMEGA- 71 Query 63 VPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGIT 122 P +HQA+EFGNR++TF V AA AV+ + ARRRTE+ YAWL V+QA+IGGI+ Sbjct 72 APALHQAIEFGNRLLTFVVSAAAVAAVIAMRMARRRTELKVYAWLNVAGIVLQAVIGGIS 131 Query 123 VRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAA 182 V L WW+VA+H L SM +VWLA +LY +I +PDDG +R L A++ + L+ Sbjct 132 VHLDLRWWSVALHFLPSMLLVWLAAMLYSRILEPDDGTPRARFPQAIRLLAAVATVALSI 191 Query 183 VLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVG 242 VL+TGT+VT +G H+GD S RL+V+ + H+ + YL L + F L Sbjct 192 VLITGTMVTGSGVHSGD-SGVGMEGRLQVDTEAMAVTHAMCMYVYLTLTVVTVFLLYKNR 250 Query 243 ATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWA 297 A + VL+ + Q AVG Q++ +P V H+A ++ VTA TA LWA Sbjct 251 APQDAKKAGWVLVVCILIQWAVGVYQFYMSIPRWTVPFHIALSSFVTAYTALLWA 305 >gi|227504380|ref|ZP_03934429.1| possible cytochrome oxidase assembly protein [Corynebacterium striatum ATCC 6940] gi|227199028|gb|EEI79076.1| possible cytochrome oxidase assembly protein [Corynebacterium striatum ATCC 6940] Length=335 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/295 (44%), Positives = 183/295 (63%), Gaps = 2/295 (0%) Query 3 YDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAE 62 + R +P+++ QR+IA I+++ QGGI V+GAIVRVT SGLGC TWP+C PGS P+ A Sbjct 10 FFREATPTIKQQRLIALILLICQGGITVSGAIVRVTGSGLGCITWPECHPGSLVPLSGA- 68 Query 63 VPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGIT 122 P +HQ +EFGNR++TF V AA A++ + ARRRTE+ YAWL +VQA+IG I+ Sbjct 69 APWIHQLIEFGNRLLTFVVSAAAVAAIVAMHMARRRTELKVYAWLNLAGIMVQAVIGAIS 128 Query 123 VRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAA 182 V L WW VA+H L SM +VWLA +LY +I +PDDG + +R + A++ + LA Sbjct 129 VFLKLNWWAVALHFLPSMILVWLAAMLYSRILEPDDGTPTRMFPQAIRVMAAMATIALAV 188 Query 183 VLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVG 242 VL TGT+VT +G H+GD RL V+ + +H+ + AYLAL + + F L Sbjct 189 VLTTGTMVTGSGVHSGDDGVGME-GRLNVDTEFMAVVHAMCMYAYLALTLIVVFMLYRFR 247 Query 243 ATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWA 297 A+ VL+A + Q +G Q++ +P V IH+ ++ VTA TA LWA Sbjct 248 ASELAKKAGWVLIACILVQWGIGVAQFYMHIPRWTVPIHIGMSSVVTAFTALLWA 302 >gi|255325019|ref|ZP_05366125.1| cytochrome aa3 controlling protein [Corynebacterium tuberculostearicum SK141] gi|255297584|gb|EET76895.1| cytochrome aa3 controlling protein [Corynebacterium tuberculostearicum SK141] Length=339 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 132/295 (45%), Positives = 184/295 (63%), Gaps = 2/295 (0%) Query 3 YDRAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAE 62 + + +P+L+ QR+IA I++L QGGI V+G+IVRVT SGLGCPTWP+C PGS P+ A Sbjct 10 FFKEAAPTLQQQRLIALILLLCQGGITVSGSIVRVTGSGLGCPTWPECQPGSLVPMEGA- 68 Query 63 VPRVHQAVEFGNRMVTFAVVIAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGIT 122 P +HQA+EFGNR++TF V AA AV+ + ARRR E+ YAWL V+QA+IGGI+ Sbjct 69 APALHQAIEFGNRLLTFVVSAAAVAAVIAMRMARRRAELKVYAWLNVAGIVLQAVIGGIS 128 Query 123 VRTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAA 182 V L WW+VA+H L SM +VWLA +LY +I +PDDG +R L A++ + L+ Sbjct 129 VHLDLRWWSVALHFLPSMLLVWLAAMLYSRILEPDDGTPRARFPQAIRLLAAVATVALSI 188 Query 183 VLVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVG 242 VL+TGT+VT +G H+GD S RL+V+ + H+ + YL L + F L Sbjct 189 VLITGTMVTGSGVHSGD-SGVGMEGRLQVDTEAMAVTHAMCMYVYLTLTVVTVFLLYKNR 247 Query 243 ATRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWA 297 A + VL+ + Q AVG Q++ +P V H+A ++ VTA TA LWA Sbjct 248 APQDAKKAGWVLVVCILIQWAVGVYQFYMSIPRWTVPFHIALSSFVTAYTALLWA 302 >gi|300858516|ref|YP_003783499.1| cytochrome aa3 controlling protein [Corynebacterium pseudotuberculosis FRC41] gi|300685970|gb|ADK28892.1| cytochrome aa3 controlling protein [Corynebacterium pseudotuberculosis FRC41] gi|302206228|gb|ADL10570.1| Cytochrome oxidase assembly protein [Corynebacterium pseudotuberculosis C231] gi|302330786|gb|ADL20980.1| Cytochrome oxidase assembly protein [Corynebacterium pseudotuberculosis 1002] gi|341824910|gb|AEK92431.1| Cytochrome oxidase assembly protein [Corynebacterium pseudotuberculosis PAT10] Length=331 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 134/301 (45%), Positives = 185/301 (62%), Gaps = 4/301 (1%) Query 5 RAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVP 64 R ++P + QR +A +++ QG I VTG+IVRVT SGLGC TWP C PGS PV A P Sbjct 14 RTLAPKISTQRALAMALLVAQGSITVTGSIVRVTGSGLGCNTWPNCHPGSLVPVKGAA-P 72 Query 65 RVHQAVEFGNRMVTFAVV-IAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 +HQA+EFGNR++TF +V IA +L V +V+ A RR E++ + + + +VQA+IGGI+V Sbjct 73 WLHQAIEFGNRLLTFVLVAIAVSLFVSIVS-AHRRKEIIIHGLVQGLGIIVQAVIGGISV 131 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 L WW VA+H L S+ +VWLA +LYV+I +PDDG S LR L AL A+ L V Sbjct 132 LLDLKWWAVAVHFLPSVLLVWLAAILYVRIAEPDDGTPERTYPSLLRGLAALGAVLLTLV 191 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGT+ T AG H+GD + RL V+I + H+H+ + YLA + L GL+ A Sbjct 192 LVTGTMTTGAGVHSGDSNVGME-GRLNVDIDWIAHVHAWTMYVYLAATVLLAAGLMLQLA 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 R +L+ ++ QAA+G QY GVP V IH+ + V A ++ LWAS +R Sbjct 251 PRRSQKLSWMLILMILIQAAIGVIQYRLGVPRWSVPIHIGMCSVVVAYSSLLWASGIQRV 310 Query 304 Q 304 Sbjct 311 N 311 >gi|308276470|gb|ADO26369.1| Cytochrome oxidase assembly protein [Corynebacterium pseudotuberculosis I19] Length=331 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 133/301 (45%), Positives = 184/301 (62%), Gaps = 4/301 (1%) Query 5 RAVSPSLRVQRVIAAIVILTQGGIAVTGAIVRVTASGLGCPTWPQCFPGSFTPVVVAEVP 64 R ++P + QR +A +++ QG I VTG+IVRVT SGLGC TWP C PGS PV A P Sbjct 14 RTLAPKISTQRALAMALLVAQGSITVTGSIVRVTGSGLGCNTWPNCHPGSLVPVKGAA-P 72 Query 65 RVHQAVEFGNRMVTFAVV-IAAALAVLVVTRARRRTEVLAYAWLMPVSTVVQAMIGGITV 123 +HQA+EFGNR++TF +V IA +L V +V+ A RR E++ + + + +VQA+IGGI+V Sbjct 73 WLHQAIEFGNRLLTFVLVAIAVSLFVSIVS-AHRRKEIIIHGLVQGLGIIVQAVIGGISV 131 Query 124 RTGLLWWTVAIHLLASMTMVWLAVLLYVKIGQPDDGVVHELVVSPLRALTALSALNLAAV 183 L WW VA+H L S+ +VWLA +LYV+I +PDDG S LR L AL A+ L V Sbjct 132 LLDLKWWAVAVHFLPSVLLVWLAAILYVRIAEPDDGTPERTYPSLLRGLAALGAVLLTLV 191 Query 184 LVTGTLVTAAGPHAGDRSPSRTVPRLKVEITTLVHMHSSLLVAYLALLIGLGFGLLAVGA 243 LVTGT+ T AG H+GD + RL V+I + H+H+ + YLA + L GL+ Sbjct 192 LVTGTMTTGAGVHSGDSNVGME-GRLNVDIDWIAHVHAWTMYVYLAATVLLAAGLMLQLT 250 Query 244 TRAILVRLAVLLALVATQAAVGTTQYFTGVPAALVAIHVAGAAAVTAATAALWASMGERA 303 R +L+ ++ QAA+G QY GVP V IH+ + V A ++ LWAS +R Sbjct 251 PRRSQKLSWMLILMILIQAAIGVIQYRLGVPRWSVPIHIGMCSVVVAYSSLLWASGIQRV 310 Query 304 Q 304 Sbjct 311 N 311 Lambda K H 0.325 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 530605165806 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40