BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1457c
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608595|ref|NP_215973.1| unidentified antibiotic-transport i... 493 1e-137
gi|289761615|ref|ZP_06520993.1| antibiotic-transport integral me... 491 5e-137
gi|340626471|ref|YP_004744923.1| putative unidentified antibioti... 491 6e-137
gi|306967563|ref|ZP_07480224.1| antibiotic-transport membrane AB... 441 4e-122
gi|296170683|ref|ZP_06852258.1| ABC efflux system [Mycobacterium... 402 3e-110
gi|118468326|ref|YP_887433.1| ABC transporter [Mycobacterium sme... 371 6e-101
gi|183982275|ref|YP_001850566.1| antibiotic ABC transporter tran... 366 2e-99
gi|118617463|ref|YP_905795.1| antibiotic ABC transporter transme... 366 2e-99
gi|342858747|ref|ZP_08715402.1| ABC transporter efflux protein, ... 365 3e-99
gi|15827235|ref|NP_301498.1| hypothetical protein ML0589 [Mycoba... 358 5e-97
gi|240171372|ref|ZP_04750031.1| antibiotic ABC transporter trans... 353 2e-95
gi|118462657|ref|YP_882504.1| ABC transporter efflux protein, Dr... 352 3e-95
gi|41407281|ref|NP_960117.1| hypothetical protein MAP1183c [Myco... 350 1e-94
gi|126435052|ref|YP_001070743.1| multidrug ABC transporter inner... 347 1e-93
gi|145224265|ref|YP_001134943.1| multidrug ABC transporter inner... 344 6e-93
gi|254775767|ref|ZP_05217283.1| ABC transporter efflux protein, ... 344 7e-93
gi|108799399|ref|YP_639596.1| ABC transporter efflux protein Drr... 344 8e-93
gi|3560510|gb|AAC82553.1| unknown [Mycobacterium smegmatis str. ... 343 2e-92
gi|120403713|ref|YP_953542.1| multidrug ABC transporter inner me... 341 6e-92
gi|333990898|ref|YP_004523512.1| antibiotic ABC transporter tran... 341 7e-92
gi|254821673|ref|ZP_05226674.1| antibiotic ABC transporter trans... 340 8e-92
gi|315444600|ref|YP_004077479.1| ABC transporter efflux protein,... 340 2e-91
gi|169629837|ref|YP_001703486.1| ABC transporter permease [Mycob... 313 2e-83
gi|54025536|ref|YP_119778.1| putative ABC transporter membrane p... 310 2e-82
gi|343924595|ref|ZP_08764143.1| putative ABC transporter permeas... 283 2e-74
gi|229493578|ref|ZP_04387363.1| ABC transporter efflux protein, ... 281 6e-74
gi|226306538|ref|YP_002766498.1| ABC transporter permease protei... 281 8e-74
gi|326382203|ref|ZP_08203895.1| putative ABC transporter membran... 280 1e-73
gi|262202306|ref|YP_003273514.1| ABC drug efflux pump, inner mem... 273 1e-71
gi|226366389|ref|YP_002784172.1| ABC transporter permease protei... 270 2e-70
gi|312139623|ref|YP_004006959.1| ABC transporter transmembrane p... 263 1e-68
gi|325676701|ref|ZP_08156375.1| ABC superfamily ATP binding cass... 262 3e-68
gi|296140213|ref|YP_003647456.1| multidrug ABC transporter inner... 260 2e-67
gi|111024142|ref|YP_707114.1| ABC transporter permease [Rhodococ... 259 3e-67
gi|333919567|ref|YP_004493148.1| putative ABC transporter membra... 255 4e-66
gi|319947904|ref|ZP_08022089.1| putative ABC transporter membran... 206 4e-51
gi|296117939|ref|ZP_06836522.1| ABC-type efflux system, permease... 197 1e-48
gi|227549234|ref|ZP_03979283.1| ABC superfamily ATP binding cass... 190 2e-46
gi|25028246|ref|NP_738300.1| hypothetical protein CE1690 [Coryne... 189 5e-46
gi|227833036|ref|YP_002834743.1| putative ABC transport system, ... 184 9e-45
gi|38233885|ref|NP_939652.1| hypothetical protein DIP1299 [Coryn... 181 7e-44
gi|225021391|ref|ZP_03710583.1| hypothetical protein CORMATOL_01... 181 1e-43
gi|317505954|ref|ZP_07963786.1| DrrB family ABC transporter effl... 180 2e-43
gi|334696933|gb|AEG81730.1| putative membrane protein [Corynebac... 180 2e-43
gi|305681198|ref|ZP_07404005.1| ABC transporter efflux protein, ... 179 3e-43
gi|213965621|ref|ZP_03393815.1| ABC drug efflux pump, inner memb... 177 1e-42
gi|337290818|ref|YP_004629839.1| hypothetical protein CULC22_012... 177 2e-42
gi|227503590|ref|ZP_03933639.1| ABC superfamily ATP binding cass... 177 2e-42
gi|291003575|ref|ZP_06561548.1| putative ABC-2 type transport sy... 176 3e-42
gi|306836148|ref|ZP_07469134.1| ABC superfamily ATP binding cass... 175 6e-42
>gi|15608595|ref|NP_215973.1| unidentified antibiotic-transport integral membrane ABC transporter
[Mycobacterium tuberculosis H37Rv]
gi|15840917|ref|NP_335954.1| ABC-type efflux system, permease protein [Mycobacterium tuberculosis
CDC1551]
gi|31792651|ref|NP_855144.1| unidentified antibiotic-transport integral membrane ABC transporter
[Mycobacterium bovis AF2122/97]
68 more sequence titles
Length=261
Score = 493 bits (1268), Expect = 1e-137, Method: Compositional matrix adjust.
Identities = 260/261 (99%), Positives = 261/261 (100%), Gaps = 0/261 (0%)
Query 1 VTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
+TQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT
Sbjct 1 MTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
Query 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA
Sbjct 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
Query 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA
Sbjct 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
Query 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI
Sbjct 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
Query 241 VVLAVWGALAALAALRWFRFT 261
VVLAVWGALAALAALRWFRFT
Sbjct 241 VVLAVWGALAALAALRWFRFT 261
>gi|289761615|ref|ZP_06520993.1| antibiotic-transport integral membrane ABC transporter [Mycobacterium
tuberculosis GM 1503]
gi|289709121|gb|EFD73137.1| antibiotic-transport integral membrane ABC transporter [Mycobacterium
tuberculosis GM 1503]
Length=261
Score = 491 bits (1264), Expect = 5e-137, Method: Compositional matrix adjust.
Identities = 259/261 (99%), Positives = 260/261 (99%), Gaps = 0/261 (0%)
Query 1 VTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
+TQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT
Sbjct 1 MTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
Query 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA
Sbjct 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
Query 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLL GTLRA
Sbjct 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLSGTLRA 180
Query 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI
Sbjct 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
Query 241 VVLAVWGALAALAALRWFRFT 261
VVLAVWGALAALAALRWFRFT
Sbjct 241 VVLAVWGALAALAALRWFRFT 261
>gi|340626471|ref|YP_004744923.1| putative unidentified antibiotic-transport integral membrane
ABC transporter [Mycobacterium canettii CIPT 140010059]
gi|340004661|emb|CCC43805.1| putative unidentified antibiotic-transport integral membrane
ABC transporter [Mycobacterium canettii CIPT 140010059]
Length=261
Score = 491 bits (1263), Expect = 6e-137, Method: Compositional matrix adjust.
Identities = 258/261 (99%), Positives = 260/261 (99%), Gaps = 0/261 (0%)
Query 1 VTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
+TQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT
Sbjct 1 MTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
Query 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA
Sbjct 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
Query 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
GKSLAVVAVVFLQAIILGAIGFALGWRPAL ALTLGAGIIALGTAGFAALGLLLGGTLRA
Sbjct 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALAALTLGAGIIALGTAGFAALGLLLGGTLRA 180
Query 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVAR+TPSGALTEALSQAMTVSVDWFGI
Sbjct 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARITPSGALTEALSQAMTVSVDWFGI 240
Query 241 VVLAVWGALAALAALRWFRFT 261
VVLAVWGALAALAALRWFRFT
Sbjct 241 VVLAVWGALAALAALRWFRFT 261
>gi|306967563|ref|ZP_07480224.1| antibiotic-transport membrane ABC transporter [Mycobacterium
tuberculosis SUMu009]
gi|307084031|ref|ZP_07493144.1| antibiotic-transport membrane ABC transporter [Mycobacterium
tuberculosis SUMu012]
gi|308373154|ref|ZP_07431207.2| antibiotic-transport membrane ABC transporter [Mycobacterium
tuberculosis SUMu005]
gi|308375581|ref|ZP_07444411.2| antibiotic-transport membrane ABC transporter [Mycobacterium
tuberculosis SUMu007]
gi|308338651|gb|EFP27502.1| antibiotic-transport membrane ABC transporter [Mycobacterium
tuberculosis SUMu005]
gi|308345847|gb|EFP34698.1| antibiotic-transport membrane ABC transporter [Mycobacterium
tuberculosis SUMu007]
gi|308354786|gb|EFP43637.1| antibiotic-transport membrane ABC transporter [Mycobacterium
tuberculosis SUMu009]
gi|308366332|gb|EFP55183.1| antibiotic-transport membrane ABC transporter [Mycobacterium
tuberculosis SUMu012]
Length=236
Score = 441 bits (1135), Expect = 4e-122, Method: Compositional matrix adjust.
Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%)
Query 26 MLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFGHNRAATFVPVIMALAVI 85
MLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFGHNRAATFVPVIMALAVI
Sbjct 1 MLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFGHNRAATFVPVIMALAVI 60
Query 86 STAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVAVVFLQAIILGAIGFALG 145
STAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVAVVFLQAIILGAIGFALG
Sbjct 61 STAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVAVVFLQAIILGAIGFALG 120
Query 146 WRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVANLMWFVFAGFGALTLESN 205
WRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVANLMWFVFAGFGALTLESN
Sbjct 121 WRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVANLMWFVFAGFGALTLESN 180
Query 206 VIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGALAALAALRWFRFT 261
VIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGALAALAALRWFRFT
Sbjct 181 VIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGALAALAALRWFRFT 236
>gi|296170683|ref|ZP_06852258.1| ABC efflux system [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894672|gb|EFG74406.1| ABC efflux system [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=259
Score = 402 bits (1032), Expect = 3e-110, Method: Compositional matrix adjust.
Identities = 230/261 (89%), Positives = 243/261 (94%), Gaps = 2/261 (0%)
Query 1 VTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
+T++N FPAGTF+PDPRPNAVP MLAAQF LELKLLLRNGEQLLLTMFIPITLLVGLT
Sbjct 1 MTESN--VFPAGTFTPDPRPNAVPRMLAAQFGLELKLLLRNGEQLLLTMFIPITLLVGLT 58
Query 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
LLP GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA
Sbjct 59 LLPFGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 118
Query 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
GKSLAVV VVFLQAI+LGAIGFALGWRPA AL LGA +IALGTA FAALGLLLGGTLRA
Sbjct 119 GKSLAVVTVVFLQAILLGAIGFALGWRPAPPALALGAAVIALGTACFAALGLLLGGTLRA 178
Query 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
EIVLAVANL+WFVFAG GALT+ES +IPT KW AR+TPSGALTEALS+AM +SVDWFGI
Sbjct 179 EIVLAVANLLWFVFAGLGALTVESGIIPTGVKWAARLTPSGALTEALSRAMALSVDWFGI 238
Query 241 VVLAVWGALAALAALRWFRFT 261
VVLAVWGA+AALAALRWFRFT
Sbjct 239 VVLAVWGAVAALAALRWFRFT 259
>gi|118468326|ref|YP_887433.1| ABC transporter [Mycobacterium smegmatis str. MC2 155]
gi|118169613|gb|ABK70509.1| ABC transporter efflux protein, DrrB family protein [Mycobacterium
smegmatis str. MC2 155]
Length=261
Score = 371 bits (952), Expect = 6e-101, Method: Compositional matrix adjust.
Identities = 209/257 (82%), Positives = 228/257 (89%), Gaps = 2/257 (0%)
Query 5 NRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPM 64
NR F GTF+PDPRP V MLAAQF LEL+LLLRNGEQLLLTMFIPITLL+GLTLLP+
Sbjct 7 NR--FAPGTFTPDPRPATVQKMLAAQFGLELRLLLRNGEQLLLTMFIPITLLIGLTLLPL 64
Query 65 GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSL 124
GSFG +RA F P IMALAVISTAFTGQAIAVAFDRRYGALKRLGAT LPVWGIIAGKSL
Sbjct 65 GSFGDDRAGAFTPAIMALAVISTAFTGQAIAVAFDRRYGALKRLGATALPVWGIIAGKSL 124
Query 125 AVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVL 184
AVVAVVFLQA++LGAIG ALGWRP L L LGA IIALGTAGFAA+GLLLGGTLR+EIVL
Sbjct 125 AVVAVVFLQAVLLGAIGVALGWRPPLAGLALGAVIIALGTAGFAAMGLLLGGTLRSEIVL 184
Query 185 AVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLA 244
A+ANL+WFVFAGFGALTLE+ +P+A WVAR+TPSGALTEALSQAMT+SVDWFGI VLA
Sbjct 185 ALANLLWFVFAGFGALTLETEAVPSALAWVARLTPSGALTEALSQAMTLSVDWFGIAVLA 244
Query 245 VWGALAALAALRWFRFT 261
VWG ++A+ ALR FRFT
Sbjct 245 VWGGVSAVCALRLFRFT 261
>gi|183982275|ref|YP_001850566.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
marinum M]
gi|183175601|gb|ACC40711.1| unidentified antibiotic-transport integral membrane ABC transporter
[Mycobacterium marinum M]
Length=262
Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 230/262 (88%), Positives = 245/262 (94%), Gaps = 1/262 (0%)
Query 1 VTQTN-RPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGL 59
+TQTN FP GTF+PDPRP+AVP MLAAQF LELKLLLRNGEQLLLTMFIPITLL+GL
Sbjct 1 MTQTNGEGTFPVGTFTPDPRPSAVPRMLAAQFGLELKLLLRNGEQLLLTMFIPITLLIGL 60
Query 60 TLLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGII 119
TLLP+GSFG +RAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGII
Sbjct 61 TLLPLGSFGQHRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGII 120
Query 120 AGKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLR 179
AGKSLAVVAVVFLQAI+LGAIGFALGWRPAL AL LG +IALGTAGFAALGLLLGGTLR
Sbjct 121 AGKSLAVVAVVFLQAIVLGAIGFALGWRPALAALALGGAVIALGTAGFAALGLLLGGTLR 180
Query 180 AEIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFG 239
AEIVLAVANLMWFVFAGFGALT+E++VIPTA KW AR+TPSGALTEALS+AM +SVDWFG
Sbjct 181 AEIVLAVANLMWFVFAGFGALTVETDVIPTAVKWAARLTPSGALTEALSRAMVLSVDWFG 240
Query 240 IVVLAVWGALAALAALRWFRFT 261
+VVLAVWG LAALAA RWFRFT
Sbjct 241 VVVLAVWGTLAALAARRWFRFT 262
>gi|118617463|ref|YP_905795.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
ulcerans Agy99]
gi|118569573|gb|ABL04324.1| unidentified antibiotic-transport integral membrane ABC transporter
[Mycobacterium ulcerans Agy99]
Length=262
Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 229/262 (88%), Positives = 245/262 (94%), Gaps = 1/262 (0%)
Query 1 VTQTN-RPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGL 59
+TQTN FP GTF+PDPRP+AVP MLAAQF LELKLLLRNGEQLLLTMFIPITLL+GL
Sbjct 1 MTQTNGEGTFPVGTFTPDPRPSAVPRMLAAQFGLELKLLLRNGEQLLLTMFIPITLLIGL 60
Query 60 TLLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGII 119
TLLP+GSFG +RAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGII
Sbjct 61 TLLPLGSFGQHRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGII 120
Query 120 AGKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLR 179
AGKSLAVVAVVFLQAI+LGAIGFALGWRPAL AL LG +IALGTAGFAALGLLLGGTLR
Sbjct 121 AGKSLAVVAVVFLQAIVLGAIGFALGWRPALAALALGGAVIALGTAGFAALGLLLGGTLR 180
Query 180 AEIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFG 239
AEIVLA+ANLMWFVFAGFGALT+E++VIPTA KW AR+TPSGALTEALS+AM +SVDWFG
Sbjct 181 AEIVLAIANLMWFVFAGFGALTVETDVIPTAVKWAARLTPSGALTEALSRAMVLSVDWFG 240
Query 240 IVVLAVWGALAALAALRWFRFT 261
+VVLAVWG LAALAA RWFRFT
Sbjct 241 VVVLAVWGTLAALAARRWFRFT 262
>gi|342858747|ref|ZP_08715402.1| ABC transporter efflux protein, DrrB family protein [Mycobacterium
colombiense CECT 3035]
gi|342134451|gb|EGT87631.1| ABC transporter efflux protein, DrrB family protein [Mycobacterium
colombiense CECT 3035]
Length=254
Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 215/253 (85%), Positives = 228/253 (91%), Gaps = 0/253 (0%)
Query 9 FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFG 68
FP GTF+PDPRP+AVP MLAAQF LELKLLLRNGEQLLLTMFIPITLLVGLTLLP+GSFG
Sbjct 2 FPPGTFAPDPRPSAVPKMLAAQFGLELKLLLRNGEQLLLTMFIPITLLVGLTLLPLGSFG 61
Query 69 HNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVA 128
+RAATF PVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVV
Sbjct 62 QHRAATFTPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVT 121
Query 129 VVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVAN 188
VVFLQAI+LGAIGFALGWRP TAL LGA +IALGT FAALGLLLGGTLRAEIVLAVAN
Sbjct 122 VVFLQAILLGAIGFALGWRPTPTALALGAAVIALGTVVFAALGLLLGGTLRAEIVLAVAN 181
Query 189 LMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGA 248
L+WFVFAG GALTLE+ + P K AR+TPSGALTEALSQAMT+SVDWFG+ VL WGA
Sbjct 182 LLWFVFAGLGALTLETGITPAGVKLAARLTPSGALTEALSQAMTMSVDWFGVAVLVAWGA 241
Query 249 LAALAALRWFRFT 261
AL+ALRWFRFT
Sbjct 242 AGALSALRWFRFT 254
>gi|15827235|ref|NP_301498.1| hypothetical protein ML0589 [Mycobacterium leprae TN]
gi|221229713|ref|YP_002503129.1| hypothetical protein MLBr_00589 [Mycobacterium leprae Br4923]
gi|466898|gb|AAA17143.1| B1496_F2_59 [Mycobacterium leprae]
gi|2398711|emb|CAB16176.1| hypothetical protein MLCL536.32 [Mycobacterium leprae]
gi|13092784|emb|CAC30097.1| putative membrane protein [Mycobacterium leprae]
gi|219932820|emb|CAR70682.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=265
Score = 358 bits (918), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 216/260 (84%), Positives = 232/260 (90%), Gaps = 0/260 (0%)
Query 2 TQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTL 61
T N P FPAGTF+P+PRPNAV M+AAQF LELKLLLRNGEQLLLTMFIPITLL+GLTL
Sbjct 6 TLRNSPLFPAGTFTPNPRPNAVTRMVAAQFMLELKLLLRNGEQLLLTMFIPITLLIGLTL 65
Query 62 LPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAG 121
LP+GSFGH+RA TFVPVIMALAV+S+AFTGQAIAVAFDRRYGALKR GATPLPVWGIIAG
Sbjct 66 LPLGSFGHHRATTFVPVIMALAVVSSAFTGQAIAVAFDRRYGALKRFGATPLPVWGIIAG 125
Query 122 KSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAE 181
KSLAVV VVFLQAIILGAIG LGWRPAL L LGA IIALGTAG AALGLLLGGTLRAE
Sbjct 126 KSLAVVTVVFLQAIILGAIGVMLGWRPALICLALGAAIIALGTAGLAALGLLLGGTLRAE 185
Query 182 IVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIV 241
IVLAVANLMWFVFAG GALT++ N+I KW AR+TPSGALTEALSQAMT+SVDWFG++
Sbjct 186 IVLAVANLMWFVFAGLGALTVKMNMISAVVKWAARLTPSGALTEALSQAMTLSVDWFGVI 245
Query 242 VLAVWGALAALAALRWFRFT 261
+L WG LAALAAL WFRFT
Sbjct 246 ILTAWGTLAALAALHWFRFT 265
>gi|240171372|ref|ZP_04750031.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
kansasii ATCC 12478]
Length=259
Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 225/258 (88%), Positives = 238/258 (93%), Gaps = 0/258 (0%)
Query 4 TNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
T+ FP GTF+P+PRPNAV MLAAQF LELKLLLRNGEQLLLTMFIPITLLVGLTLLP
Sbjct 2 TDNTLFPPGTFTPNPRPNAVSRMLAAQFGLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 61
Query 64 MGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 123
+GSFG +RAATFVPVIMALAV+STAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS
Sbjct 62 LGSFGQHRAATFVPVIMALAVVSTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 121
Query 124 LAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIV 183
LAVVAVVFLQAIILGAIGFALGWRPA AL LGA +IALGTAGFAALGLLLGGTLRAEIV
Sbjct 122 LAVVAVVFLQAIILGAIGFALGWRPAPAALALGAAVIALGTAGFAALGLLLGGTLRAEIV 181
Query 184 LAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVL 243
LAVANLMWFVFAGFGALTLE+ +IP A KW AR+TPSGALTEALSQAM +SVDWFG++VL
Sbjct 182 LAVANLMWFVFAGFGALTLETTMIPMAIKWAARLTPSGALTEALSQAMILSVDWFGLIVL 241
Query 244 AVWGALAALAALRWFRFT 261
A WG LAALAA RWFRFT
Sbjct 242 AAWGTLAALAARRWFRFT 259
>gi|118462657|ref|YP_882504.1| ABC transporter efflux protein, DrrB family protein [Mycobacterium
avium 104]
gi|118163944|gb|ABK64841.1| ABC transporter efflux protein, DrrB family protein [Mycobacterium
avium 104]
Length=259
Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 217/258 (85%), Positives = 233/258 (91%), Gaps = 0/258 (0%)
Query 4 TNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
T+ FP GTF+P+PRP+AVP MLAAQ+ LELKLLLRNGEQLLLTMFIPITLLVGLTLLP
Sbjct 2 TDSGVFPVGTFTPNPRPSAVPKMLAAQYGLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 61
Query 64 MGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 123
+GSFG +RAATF PVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS
Sbjct 62 LGSFGQHRAATFTPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 121
Query 124 LAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIV 183
LAVV VVFLQAI+LGAIGFALGWRPAL AL LGA +IALGTA FAALGLLLGGTLRAEIV
Sbjct 122 LAVVTVVFLQAILLGAIGFALGWRPALAALALGAAVIALGTAVFAALGLLLGGTLRAEIV 181
Query 184 LAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVL 243
LA+ANLMWFVFAG GALT++S VIP KW AR+TPSGALTEALS+AMT+S DWFG+ VL
Sbjct 182 LALANLMWFVFAGLGALTVDSGVIPAGVKWAARLTPSGALTEALSRAMTLSADWFGMAVL 241
Query 244 AVWGALAALAALRWFRFT 261
WGAL AL ALRWFRFT
Sbjct 242 VAWGALGALGALRWFRFT 259
>gi|41407281|ref|NP_960117.1| hypothetical protein MAP1183c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395633|gb|AAS03500.1| hypothetical protein MAP_1183c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458010|gb|EGO36997.1| ABC transporter efflux protein, DrrB family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=259
Score = 350 bits (897), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 216/258 (84%), Positives = 232/258 (90%), Gaps = 0/258 (0%)
Query 4 TNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
T+ FP GTF+P+PRP+AVP MLAAQ+ LELKLLLRNGEQLLLTMFIPITLLVGLTLLP
Sbjct 2 TDSGVFPVGTFTPNPRPSAVPKMLAAQYGLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 61
Query 64 MGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 123
+GSFG +RAATF PVIMALAVIST FTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS
Sbjct 62 LGSFGQHRAATFTPVIMALAVISTTFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 121
Query 124 LAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIV 183
LAVV VVFLQAI+LGAIGFALGWRPAL AL LGA +IALGTA FAALGLLLGGTLRAEIV
Sbjct 122 LAVVTVVFLQAILLGAIGFALGWRPALAALALGAAVIALGTAVFAALGLLLGGTLRAEIV 181
Query 184 LAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVL 243
LA+ANLMWFVFAG GALT++S VIP KW AR+TPSGALTEALS+AMT+S DWFG+ VL
Sbjct 182 LALANLMWFVFAGLGALTVDSGVIPAGVKWAARLTPSGALTEALSRAMTLSADWFGMAVL 241
Query 244 AVWGALAALAALRWFRFT 261
WGAL AL ALRWFRFT
Sbjct 242 VAWGALGALGALRWFRFT 259
>gi|126435052|ref|YP_001070743.1| multidrug ABC transporter inner membrane protein [Mycobacterium
sp. JLS]
gi|126234852|gb|ABN98252.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Mycobacterium
sp. JLS]
Length=258
Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 209/258 (82%), Positives = 226/258 (88%), Gaps = 2/258 (0%)
Query 4 TNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
TN+ F GTF+PDPRP AVP MLAAQF LEL+LLLRNGEQLLLTMFIPITLLVGL LLP
Sbjct 3 TNQ--FAPGTFTPDPRPAAVPKMLAAQFGLELRLLLRNGEQLLLTMFIPITLLVGLILLP 60
Query 64 MGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 123
+G FG +RA TFVP IMALAVISTAFTGQAIAVAFDRRYGALKRLGAT LPVWGIIAGKS
Sbjct 61 LGDFGDDRAGTFVPAIMALAVISTAFTGQAIAVAFDRRYGALKRLGATALPVWGIIAGKS 120
Query 124 LAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIV 183
LAVVAVVFLQ+++LGAIG ALGWRP + L LGA IIALGTAGFAALGLLLGGTLRAEIV
Sbjct 121 LAVVAVVFLQSVLLGAIGIALGWRPEVVGLALGAAIIALGTAGFAALGLLLGGTLRAEIV 180
Query 184 LAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVL 243
LAVANL+WFVFAG GALTLE +P A W AR+TPSGALTEAL+QAMT+S+DW G+ VL
Sbjct 181 LAVANLLWFVFAGLGALTLEGQAVPGALAWAARLTPSGALTEALTQAMTLSIDWLGLAVL 240
Query 244 AVWGALAALAALRWFRFT 261
A WG +AAL ALRWFRFT
Sbjct 241 AAWGGVAALCALRWFRFT 258
>gi|145224265|ref|YP_001134943.1| multidrug ABC transporter inner membrane protein [Mycobacterium
gilvum PYR-GCK]
gi|145216751|gb|ABP46155.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Mycobacterium
gilvum PYR-GCK]
Length=259
Score = 344 bits (883), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 208/260 (80%), Positives = 229/260 (89%), Gaps = 2/260 (0%)
Query 1 VTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
++ NR F GTF+PDPRP VP MLAAQF+LEL+LLLRNGEQLLLTMFIPITLL+GL
Sbjct 1 MSVENR--FAPGTFTPDPRPAKVPKMLAAQFALELRLLLRNGEQLLLTMFIPITLLIGLI 58
Query 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
LLP+GSFG NRAATFVP IMALAVISTAFTGQAIAVAFDRRYGALKRLGAT LPVWG+IA
Sbjct 59 LLPLGSFGPNRAATFVPAIMALAVISTAFTGQAIAVAFDRRYGALKRLGATALPVWGVIA 118
Query 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
GKSLAVV VV LQ+++ GAIGFALGWRP L L LGA IIALGTA FAALGLLLGGTLRA
Sbjct 119 GKSLAVVTVVSLQSVLFGAIGFALGWRPPLAGLALGALIIALGTAVFAALGLLLGGTLRA 178
Query 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
EIVLA+ANL+WFVFAG GAL LE ++P A +WVAR+TPSGALTEAL QAMT+SVDWFG+
Sbjct 179 EIVLALANLLWFVFAGLGALVLERGMVPAAVQWVARLTPSGALTEALVQAMTLSVDWFGL 238
Query 241 VVLAVWGALAALAALRWFRF 260
+VLA WGA+AAL ALRWFRF
Sbjct 239 LVLAAWGAVAALCALRWFRF 258
>gi|254775767|ref|ZP_05217283.1| ABC transporter efflux protein, DrrB family protein [Mycobacterium
avium subsp. avium ATCC 25291]
Length=251
Score = 344 bits (883), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 213/250 (86%), Positives = 229/250 (92%), Gaps = 0/250 (0%)
Query 12 GTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFGHNR 71
GTF+P+PRP+AVP MLAAQ+ LELKLLLRNGEQLLLTMFIPITLLVGLTLLP+GSFG +R
Sbjct 2 GTFTPNPRPSAVPKMLAAQYGLELKLLLRNGEQLLLTMFIPITLLVGLTLLPLGSFGQHR 61
Query 72 AATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVAVVF 131
AATF PVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVV VVF
Sbjct 62 AATFTPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVTVVF 121
Query 132 LQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVANLMW 191
LQAI+LGAIGFALGWRPAL AL LGA +IALGTA FAALGLLLGGTLRAEIVLA+ANLMW
Sbjct 122 LQAILLGAIGFALGWRPALAALALGAAVIALGTAVFAALGLLLGGTLRAEIVLALANLMW 181
Query 192 FVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGALAA 251
FVFAG GALT++S VIP KW AR+TPSGALTEALS+AMT+S DWFG+ VL WGAL A
Sbjct 182 FVFAGLGALTVDSGVIPAGVKWAARLTPSGALTEALSRAMTLSADWFGMAVLVAWGALGA 241
Query 252 LAALRWFRFT 261
L +LRWFRFT
Sbjct 242 LGSLRWFRFT 251
>gi|108799399|ref|YP_639596.1| ABC transporter efflux protein DrrB [Mycobacterium sp. MCS]
gi|119868512|ref|YP_938464.1| multidrug ABC transporter inner membrane protein [Mycobacterium
sp. KMS]
gi|108769818|gb|ABG08540.1| ABC transporter, DrrB efflux protein [Mycobacterium sp. MCS]
gi|119694601|gb|ABL91674.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Mycobacterium
sp. KMS]
Length=258
Score = 344 bits (882), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 208/258 (81%), Positives = 224/258 (87%), Gaps = 2/258 (0%)
Query 4 TNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
TN+ F GTF+PDPRP AVP MLAAQF LEL+LLLRNGEQLLLTMFIPITLLVGL LLP
Sbjct 3 TNQ--FAPGTFTPDPRPAAVPKMLAAQFGLELRLLLRNGEQLLLTMFIPITLLVGLILLP 60
Query 64 MGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 123
+G FG +RA TFVP IMALAVISTAFTGQAIAVAFDRRYGALKRLGAT LPVWGIIAGKS
Sbjct 61 LGDFGDDRAGTFVPAIMALAVISTAFTGQAIAVAFDRRYGALKRLGATALPVWGIIAGKS 120
Query 124 LAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIV 183
LAVVAVVFLQ+++LGAIG ALGWRP + L LG IIALGTAGFAALGLLLGGTLRAEIV
Sbjct 121 LAVVAVVFLQSVLLGAIGIALGWRPEVVGLALGGAIIALGTAGFAALGLLLGGTLRAEIV 180
Query 184 LAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVL 243
LAVANL+WFVFAG GALTLE +P A W AR+TPSGALTEAL+QAM +SVDW G+ VL
Sbjct 181 LAVANLLWFVFAGLGALTLEGQAVPGALAWAARLTPSGALTEALTQAMALSVDWLGLAVL 240
Query 244 AVWGALAALAALRWFRFT 261
A WG +AAL ALRWFRFT
Sbjct 241 AAWGGVAALCALRWFRFT 258
>gi|3560510|gb|AAC82553.1| unknown [Mycobacterium smegmatis str. MC2 155]
Length=236
Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/236 (83%), Positives = 213/236 (91%), Gaps = 0/236 (0%)
Query 26 MLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFGHNRAATFVPVIMALAVI 85
MLAAQF LEL+LLLR +QLLLTMFIPITLL+GLTLLP+GSFG +RA F P IMALAVI
Sbjct 1 MLAAQFGLELRLLLRTAKQLLLTMFIPITLLIGLTLLPLGSFGDDRAGAFTPAIMALAVI 60
Query 86 STAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVAVVFLQAIILGAIGFALG 145
STAFTGQAIAVAFDRRYGALKRLGAT LPVWGIIAGKSLAVVAVVFLQA++LGAIG ALG
Sbjct 61 STAFTGQAIAVAFDRRYGALKRLGATALPVWGIIAGKSLAVVAVVFLQAVLLGAIGVALG 120
Query 146 WRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVANLMWFVFAGFGALTLESN 205
WRP L L LGA IIALGTAGFAA+GLLLGGTLR+EIVLA+ANL+WFVFAGFGALTLE+
Sbjct 121 WRPPLAGLALGAVIIALGTAGFAAMGLLLGGTLRSEIVLALANLLWFVFAGFGALTLETE 180
Query 206 VIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGALAALAALRWFRFT 261
+P+A WVAR+TPSGALTEALSQAMT+SVDWFGI VLAVWG ++A+ ALR FRFT
Sbjct 181 AVPSALAWVARLTPSGALTEALSQAMTLSVDWFGIAVLAVWGGVSAVCALRLFRFT 236
>gi|120403713|ref|YP_953542.1| multidrug ABC transporter inner membrane protein [Mycobacterium
vanbaalenii PYR-1]
gi|119956531|gb|ABM13536.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Mycobacterium
vanbaalenii PYR-1]
Length=259
Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 214/261 (82%), Positives = 231/261 (89%), Gaps = 2/261 (0%)
Query 1 VTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
+T NR F GTF+PDPRP VP MLAAQF LEL+LLLRNGEQLLLTMFIPITLLVGLT
Sbjct 1 MTTENR--FTPGTFTPDPRPAPVPRMLAAQFRLELRLLLRNGEQLLLTMFIPITLLVGLT 58
Query 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
LLP+GSFG NRAATFVP IMALAVISTAFTGQAIAVAFDRRYGALKRLGAT LPVWGIIA
Sbjct 59 LLPLGSFGDNRAATFVPAIMALAVISTAFTGQAIAVAFDRRYGALKRLGATALPVWGIIA 118
Query 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
GKSLAV AVV LQ+I+ GAIGFALGWRP L L LGA IIALGTA FAALGLLLGGTLRA
Sbjct 119 GKSLAVGAVVILQSILFGAIGFALGWRPPLAGLALGAVIIALGTAVFAALGLLLGGTLRA 178
Query 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
EIVLA+ANL+WFVFAG GALTLE+ V+P+ +WVAR+TPSGALTEAL+QAMT S+DWFG+
Sbjct 179 EIVLALANLLWFVFAGLGALTLEAGVVPSTVQWVARLTPSGALTEALTQAMTSSMDWFGL 238
Query 241 VVLAVWGALAALAALRWFRFT 261
VLAVWGA+A L ALRWFRFT
Sbjct 239 AVLAVWGAVAGLCALRWFRFT 259
>gi|333990898|ref|YP_004523512.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
sp. JDM601]
gi|333486866|gb|AEF36258.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
sp. JDM601]
Length=262
Score = 341 bits (874), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 185/261 (71%), Positives = 217/261 (84%), Gaps = 3/261 (1%)
Query 4 TNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
+++ F GTF+PDPRP VP MLAAQ+ LEL LLLRNGEQLLLTMFIPITLL+GLT+LP
Sbjct 2 SDQHVFAPGTFTPDPRPAGVPAMLAAQYRLELTLLLRNGEQLLLTMFIPITLLIGLTVLP 61
Query 64 MGSFGH---NRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
+G FG RA T +PVIM+LAVI+TAFTGQAIAVAFDRRYGALKRLGAT LPVWG+I
Sbjct 62 LGPFGEGHAERATTVLPVIMSLAVIATAFTGQAIAVAFDRRYGALKRLGATALPVWGVIT 121
Query 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
GKSL+V VV LQ+++LG IG ALGWRP L LGA +IALGTA FAALGLLLGG+LRA
Sbjct 122 GKSLSVATVVLLQSVLLGLIGIALGWRPTPLGLALGAVVIALGTACFAALGLLLGGSLRA 181
Query 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
EIVLA+ANLMWFVF GF ALT+E+ ++P A +W+AR+TPSGALTEAL+QA+ VS DWFG+
Sbjct 182 EIVLALANLMWFVFGGFSALTVETELVPGAVRWLARLTPSGALTEALAQALAVSFDWFGV 241
Query 241 VVLAVWGALAALAALRWFRFT 261
V+ WG LA L A+RWFRF+
Sbjct 242 AVVVAWGLLAGLGAVRWFRFS 262
>gi|254821673|ref|ZP_05226674.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
intracellulare ATCC 13950]
Length=239
Score = 340 bits (873), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 209/239 (88%), Positives = 223/239 (94%), Gaps = 0/239 (0%)
Query 23 VPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFGHNRAATFVPVIMAL 82
+P MLAAQF LELKLLLRNGEQLLLTMFIPITLLVGLTLLP+GSFG +RAATF PVIMAL
Sbjct 1 MPKMLAAQFGLELKLLLRNGEQLLLTMFIPITLLVGLTLLPLGSFGQHRAATFTPVIMAL 60
Query 83 AVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVAVVFLQAIILGAIGF 142
AVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVV VVFLQAI+LGAIGF
Sbjct 61 AVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVTVVFLQAILLGAIGF 120
Query 143 ALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVANLMWFVFAGFGALTL 202
ALGWRPAL AL LGAG+IALGT FAALGLLLGGTLRAEIVLAVANLMWFVFAG GALT+
Sbjct 121 ALGWRPALLALALGAGVIALGTVVFAALGLLLGGTLRAEIVLAVANLMWFVFAGLGALTV 180
Query 203 ESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGALAALAALRWFRFT 261
E+++IPT KW AR+TPSGALTEALSQAMT+SVDWFG++VLA WG L AL+ALRWFRFT
Sbjct 181 ETDIIPTGVKWAARLTPSGALTEALSQAMTMSVDWFGVIVLAAWGTLGALSALRWFRFT 239
>gi|315444600|ref|YP_004077479.1| ABC transporter efflux protein, DrrB family [Mycobacterium sp.
Spyr1]
gi|315262903|gb|ADT99644.1| ABC transporter efflux protein, DrrB family [Mycobacterium sp.
Spyr1]
Length=259
Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 206/260 (80%), Positives = 227/260 (88%), Gaps = 2/260 (0%)
Query 1 VTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
++ NR F GTF+PDPRP VP MLAAQF+LEL+LLLRNGEQLLLTMFIPITLL+GL
Sbjct 1 MSVENR--FAPGTFTPDPRPAKVPKMLAAQFALELRLLLRNGEQLLLTMFIPITLLIGLI 58
Query 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
LLP+GSFG NRAATFVP IMALAVISTAFTGQAIAVAFDRRYGALKRLGAT LPVWG+IA
Sbjct 59 LLPLGSFGPNRAATFVPAIMALAVISTAFTGQAIAVAFDRRYGALKRLGATALPVWGVIA 118
Query 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
GKSLAVV VV LQ+++ GAIGFALGWRP L L LGA IIALGTA FAALGLLLGGTLRA
Sbjct 119 GKSLAVVTVVSLQSVLFGAIGFALGWRPPLAGLALGALIIALGTAVFAALGLLLGGTLRA 178
Query 181 EIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGI 240
EIVLA+ANL+WFVFAG GAL LE ++P A +WVAR+T SGALTEAL QAMT+SVDWF +
Sbjct 179 EIVLALANLLWFVFAGLGALVLERGMVPAAVQWVARLTASGALTEALVQAMTLSVDWFDL 238
Query 241 VVLAVWGALAALAALRWFRF 260
+VLA WGA+AAL ALRWFRF
Sbjct 239 LVLAAWGAVAALCALRWFRF 258
>gi|169629837|ref|YP_001703486.1| ABC transporter permease [Mycobacterium abscessus ATCC 19977]
gi|169241804|emb|CAM62832.1| Probable ABC transporter, permease [Mycobacterium abscessus]
Length=265
Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 193/265 (73%), Positives = 218/265 (83%), Gaps = 4/265 (1%)
Query 1 VTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
+T T P F GTF+PDPRP+AV ML AQF LELKLLLRNGEQLLLTMFIPITLL+GLT
Sbjct 1 MTDTTTPRFDPGTFTPDPRPSAVHTMLFAQFWLELKLLLRNGEQLLLTMFIPITLLIGLT 60
Query 61 LLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIA 120
LLP+G F +R FVP IMALAVISTAFTGQAIAV FDRRYGALKRLGAT LPVWGIIA
Sbjct 61 LLPLGQFPGSRTDIFVPAIMALAVISTAFTGQAIAVGFDRRYGALKRLGATALPVWGIIA 120
Query 121 GKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRA 180
GK+LAVV VV LQA ++GAIG ALGWRP L +GA +IA+GTA F A+GLLLGGTLRA
Sbjct 121 GKALAVVTVVVLQAAVIGAIGGALGWRPHPVGLLVGAVVIAIGTAAFVAMGLLLGGTLRA 180
Query 181 EIVLAVANLMWFVFAGFGALTLE----SNVIPTAFKWVARVTPSGALTEALSQAMTVSVD 236
EIVLA+ANL+WF+FAG GALTLE ++ IP A +AR++PSGAL+EAL+ AMT+SVD
Sbjct 181 EIVLALANLLWFIFAGLGALTLEDGRTTDAIPRAVVLLARLSPSGALSEALAAAMTLSVD 240
Query 237 WFGIVVLAVWGALAALAALRWFRFT 261
WF I VLAVWGALA ALRWF+FT
Sbjct 241 WFAIAVLAVWGALAGYGALRWFKFT 265
>gi|54025536|ref|YP_119778.1| putative ABC transporter membrane protein [Nocardia farcinica
IFM 10152]
gi|54017044|dbj|BAD58414.1| putative ABC transporter membrane protein [Nocardia farcinica
IFM 10152]
Length=263
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/256 (66%), Positives = 194/256 (76%), Gaps = 2/256 (0%)
Query 5 NRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPM 64
NR F GTF+PDPRP++ ML AQ +EL LLLRNGEQLLLTMFIPITLLVGLTLLP
Sbjct 9 NR--FAPGTFAPDPRPSSRAAMLTAQTRIELILLLRNGEQLLLTMFIPITLLVGLTLLPF 66
Query 65 GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSL 124
G G R T VP +M +AV+STAFTGQAIAV FDRRYGALKRLGAT LP WGIIAGKS
Sbjct 67 GELGDTRVDTIVPAVMMVAVMSTAFTGQAIAVGFDRRYGALKRLGATALPRWGIIAGKSA 126
Query 125 AVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVL 184
AV+ VV LQA+ILG IG ALGWRP + L LGA IIALGTA FAA+GLLLGGTL+AE+VL
Sbjct 127 AVLIVVVLQALILGLIGVALGWRPGVGGLALGAVIIALGTATFAAMGLLLGGTLKAEVVL 186
Query 185 AVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLA 244
A+AN++WFV G ++ +PTA +AR+ PSGAL E L +A+ SVD FG++VL
Sbjct 187 ALANILWFVMLGIASVVFVGEDLPTAVTVIARLVPSGALAETLERALAGSVDVFGVLVLL 246
Query 245 VWGALAALAALRWFRF 260
WGA+ A RWFRF
Sbjct 247 AWGAVTGALAARWFRF 262
>gi|343924595|ref|ZP_08764143.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
gi|343765530|dbj|GAA11069.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
Length=267
Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 167/265 (64%), Positives = 197/265 (75%), Gaps = 9/265 (3%)
Query 5 NRPA-----FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGL 59
N PA FP G F P PRP ++P M+ AQ +LELKLLLRNGEQLLLTMFIPITLL+GL
Sbjct 2 NSPAPGTGLFPEGMFRPAPRPASLPAMITAQSTLELKLLLRNGEQLLLTMFIPITLLIGL 61
Query 60 TLLPMGS-FGH---NRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPV 115
LLP+ + FG RA FVP I+ +AV+STAFTGQAIAV FDRRYGALKRLGATP+P
Sbjct 62 CLLPINTTFGDGPAERATLFVPAILTVAVMSTAFTGQAIAVGFDRRYGALKRLGATPIPR 121
Query 116 WGIIAGKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLG 175
WGII GKS+AV+ VV LQ++ILGAIG A GWRP L +GA +I +GTA FAALGLLLG
Sbjct 122 WGIIIGKSVAVLIVVALQSVILGAIGLAFGWRPDAVGLLIGALVIIVGTACFAALGLLLG 181
Query 176 GTLRAEIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSV 235
GTL+AE+VLA+ANL+WF F G G+L + + +P A AR PSGAL+EAL A S
Sbjct 182 GTLKAEVVLALANLLWFAFIGLGSLVVVDSNVPGAVHTFARCIPSGALSEALEMAARGSF 241
Query 236 DWFGIVVLAVWGALAALAALRWFRF 260
D FG+ VL VW A+A A+RWFRF
Sbjct 242 DAFGVGVLLVWAAVAGTLAVRWFRF 266
>gi|229493578|ref|ZP_04387363.1| ABC transporter efflux protein, DrrB family [Rhodococcus erythropolis
SK121]
gi|229319539|gb|EEN85375.1| ABC transporter efflux protein, DrrB family [Rhodococcus erythropolis
SK121]
Length=284
Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 169/257 (66%), Positives = 200/257 (78%), Gaps = 2/257 (0%)
Query 5 NRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPM 64
NR F GTFSPDPRPN+ MLAAQ LEL LLLRNGEQLLLTMFIPITLL+GL LLP+
Sbjct 30 NR--FEPGTFSPDPRPNSAAKMLAAQTKLELTLLLRNGEQLLLTMFIPITLLIGLCLLPI 87
Query 65 GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSL 124
G G +R T +P +M +AV+STAFTGQAIAV FDRRYGALKRLGATPLP WGIIAGKS
Sbjct 88 GDLGDSRVDTVLPGVMMVAVMSTAFTGQAIAVGFDRRYGALKRLGATPLPRWGIIAGKSA 147
Query 125 AVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVL 184
AV+ VV LQ+++LGAIG ALGWRP+ L LGA +IA+GT FAALGLLLGGTLRAEIVL
Sbjct 148 AVIIVVALQSLLLGAIGLALGWRPSFVELVLGAVVIAIGTVTFAALGLLLGGTLRAEIVL 207
Query 185 AVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLA 244
A+AN++WF+ G G++ S +PTA + R+ PSGAL AL A+ S+DWF I+VL
Sbjct 208 ALANILWFIMVGIGSVVFASGELPTAVHTLVRIVPSGALAHALEAALDTSMDWFSILVLL 267
Query 245 VWGALAALAALRWFRFT 261
+W A+A + A RWF+FT
Sbjct 268 IWAAVAGVCAARWFKFT 284
>gi|226306538|ref|YP_002766498.1| ABC transporter permease protein [Rhodococcus erythropolis PR4]
gi|226185655|dbj|BAH33759.1| putative ABC transporter permease protein [Rhodococcus erythropolis
PR4]
Length=284
Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 169/257 (66%), Positives = 200/257 (78%), Gaps = 2/257 (0%)
Query 5 NRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPM 64
NR F GTFSPDPRPN+ MLAAQ LEL LLLRNGEQLLLTMFIPITLL+GL LLP+
Sbjct 30 NR--FEPGTFSPDPRPNSAAKMLAAQTKLELTLLLRNGEQLLLTMFIPITLLIGLCLLPI 87
Query 65 GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSL 124
G G +R T +P +M +AV+STAFTGQAIAV FDRRYGALKRLGATPLP WGIIAGKS
Sbjct 88 GDLGDSRVDTVLPGVMMVAVMSTAFTGQAIAVGFDRRYGALKRLGATPLPRWGIIAGKSA 147
Query 125 AVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVL 184
AV+ VV LQ+++LGAIG ALGWRP+ L LGA +IA+GT FAALGLLLGGTLRAEIVL
Sbjct 148 AVIIVVALQSLLLGAIGLALGWRPSFVELVLGAVVIAIGTVTFAALGLLLGGTLRAEIVL 207
Query 185 AVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLA 244
A+AN++WF+ G G++ S +PTA + R+ PSGAL AL A+ S+DWF I+VL
Sbjct 208 ALANVLWFIMVGIGSVVFASGELPTAVHTLVRIVPSGALAHALEAALDTSMDWFSILVLL 267
Query 245 VWGALAALAALRWFRFT 261
+W A+A + A RWF+FT
Sbjct 268 IWAAVAGICAARWFKFT 284
>gi|326382203|ref|ZP_08203895.1| putative ABC transporter membrane protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198933|gb|EGD56115.1| putative ABC transporter membrane protein [Gordonia neofelifaecis
NRRL B-59395]
Length=266
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/264 (63%), Positives = 202/264 (77%), Gaps = 6/264 (2%)
Query 1 VTQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLT 60
V NR FP+GTF+P+P+P + MLAAQ +EL LLLRNGEQLLLTMFIPIT+LVGL+
Sbjct 4 VPAANR--FPSGTFTPNPQPAPLARMLAAQTRMELVLLLRNGEQLLLTMFIPITMLVGLS 61
Query 61 LLPM----GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVW 116
LLP+ G RA TFVP I+A+A++STAFTGQAIAV FDRRYGALKRLGATP+P W
Sbjct 62 LLPLTTEAGDTPAARATTFVPAILAVAIMSTAFTGQAIAVGFDRRYGALKRLGATPIPRW 121
Query 117 GIIAGKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGG 176
GIIAGKSLAV+ VV +Q++I+GAIG A GWRP L L LGA IA+GT FA+LGLLLGG
Sbjct 122 GIIAGKSLAVLIVVVMQSVIIGAIGLAFGWRPGLAGLALGALAIAVGTVAFASLGLLLGG 181
Query 177 TLRAEIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVD 236
TL+AE+VLA+ NL+WFV G L + +P A + +AR++PSGALTEAL++A+ S D
Sbjct 182 TLKAEVVLALGNLIWFVLLGLAGLVVFDEHVPGAVRTIARLSPSGALTEALTRALESSFD 241
Query 237 WFGIVVLAVWGALAALAALRWFRF 260
FG VL VW A+ + A+RWFRF
Sbjct 242 VFGFCVLIVWAAIGSALAVRWFRF 265
>gi|262202306|ref|YP_003273514.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Gordonia
bronchialis DSM 43247]
gi|262085653|gb|ACY21621.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Gordonia
bronchialis DSM 43247]
Length=274
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 170/261 (66%), Positives = 199/261 (77%), Gaps = 6/261 (2%)
Query 6 RPA--FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
RP FP GTF+P P+ + MLAAQ LEL+LLLRNGEQLLLTMFIPITLL+GL LLP
Sbjct 13 RPGELFPPGTFAPRPQTAGIAAMLAAQSRLELRLLLRNGEQLLLTMFIPITLLIGLCLLP 72
Query 64 ----MGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGII 119
+G+ RA FVP I+ +AV+STAFTGQAIAV FDRRYGALKRLGATP+P WGII
Sbjct 73 VDTGLGTGPAARADVFVPAILTVAVMSTAFTGQAIAVGFDRRYGALKRLGATPIPRWGII 132
Query 120 AGKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLR 179
GKS+AV+ VV Q++ILGAIG A GWRPA+ L LGA +IA+GTA FAALGLLLGGTL+
Sbjct 133 VGKSIAVLVVVIAQSVILGAIGVAFGWRPAILGLALGAVVIAIGTACFAALGLLLGGTLK 192
Query 180 AEIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFG 239
AE+VLA+ANL WF G G+L + + +P A WVAR PSGALTEAL +A +VD FG
Sbjct 193 AEVVLALANLAWFALVGIGSLVVLDSRVPDAVWWVARCVPSGALTEALERASHGTVDVFG 252
Query 240 IVVLAVWGALAALAALRWFRF 260
I VL VW A+AA A+RWFRF
Sbjct 253 IGVLLVWSAVAAALAVRWFRF 273
>gi|226366389|ref|YP_002784172.1| ABC transporter permease protein [Rhodococcus opacus B4]
gi|226244879|dbj|BAH55227.1| putative ABC transporter permease protein [Rhodococcus opacus
B4]
Length=264
Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 169/257 (66%), Positives = 196/257 (77%), Gaps = 2/257 (0%)
Query 5 NRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPM 64
NR F GTF+PDPRP+ +ML AQ +LELKLLLRNGEQLLLTMFIPITLL+GL LLP+
Sbjct 10 NR--FAPGTFTPDPRPSGAAVMLRAQTALELKLLLRNGEQLLLTMFIPITLLIGLCLLPI 67
Query 65 GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSL 124
G G +R VP +M +AV+STAFTGQAIAV FDRRYGALKRLGATPLP WGIIAGKS
Sbjct 68 GDLGTSRVDKVVPAVMMVAVMSTAFTGQAIAVGFDRRYGALKRLGATPLPTWGIIAGKSA 127
Query 125 AVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVL 184
AVV VV LQ+++LGAIG ALGWRP+ L LGA IIALGT FAA+GLLLGGTLRA+IVL
Sbjct 128 AVVIVVALQSVLLGAIGLALGWRPSAWGLLLGAVIIALGTVTFAAMGLLLGGTLRADIVL 187
Query 185 AVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLA 244
A+AN++WFV G G++ + +P AR+ PSGAL AL A++ SVD +VVLA
Sbjct 188 ALANILWFVMVGVGSVVFATGELPWLLHTGARLIPSGALAHALDAALSGSVDLLSVVVLA 247
Query 245 VWGALAALAALRWFRFT 261
VWGA A A R FRFT
Sbjct 248 VWGAAAGALAARTFRFT 264
>gi|312139623|ref|YP_004006959.1| ABC transporter transmembrane protein [Rhodococcus equi 103S]
gi|311888962|emb|CBH48275.1| putative ABC-2 type transporter integral membrane subunit [Rhodococcus
equi 103S]
Length=265
Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 158/263 (61%), Positives = 195/263 (75%), Gaps = 4/263 (1%)
Query 1 VTQTNRPA---FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLV 57
VT R A F AGTF+P+P+P MLA+Q LEL LLLRNGEQLL+TM IPITLL+
Sbjct 3 VTNHERLADNRFAAGTFAPNPQPAPPARMLASQTKLELTLLLRNGEQLLITMLIPITLLI 62
Query 58 GLTLLPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWG 117
GLTLLP+G FG +R T VP +M +A++STAFTGQAIAV FDRRYGALKRLGATPLP WG
Sbjct 63 GLTLLPIGDFGTDRVDTIVPAVMMVAIMSTAFTGQAIAVGFDRRYGALKRLGATPLPKWG 122
Query 118 IIAGKSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGT 177
IIAGKS AVV VV +Q +ILGAIGFALGWRP++ L LGA +IALGT FA +GLLLGG+
Sbjct 123 IIAGKSAAVVIVVAMQTLILGAIGFALGWRPSVLGLALGAVVIALGTVTFACMGLLLGGS 182
Query 178 LRAEIVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDW 237
LRAEIVLA+AN++WF AG G++ ++ I + A++ PSGAL +AL A +V++
Sbjct 183 LRAEIVLALANILWFAMAGIGSVIF-ADQINDGVRIAAQIVPSGALAQALEDATGGTVNF 241
Query 238 FGIVVLAVWGALAALAALRWFRF 260
+ +LA W A+ A R F+F
Sbjct 242 ACVAILAAWAAVTGFVATRTFKF 264
>gi|325676701|ref|ZP_08156375.1| ABC superfamily ATP binding cassette transporter permease [Rhodococcus
equi ATCC 33707]
gi|325552483|gb|EGD22171.1| ABC superfamily ATP binding cassette transporter permease [Rhodococcus
equi ATCC 33707]
Length=263
Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/257 (61%), Positives = 193/257 (76%), Gaps = 3/257 (1%)
Query 4 TNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
NR F AGTF+P+P+P MLA+Q LEL LLLRNGEQLL+TM IPITLL+GLTLLP
Sbjct 9 DNR--FAAGTFAPNPQPAPPARMLASQTKLELTLLLRNGEQLLITMLIPITLLIGLTLLP 66
Query 64 MGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 123
+G FG +R T VP +M +A++STAFTGQAIAV FDRRYGALKRLGATPLP WGIIAGKS
Sbjct 67 IGDFGTDRVDTIVPAVMMVAIMSTAFTGQAIAVGFDRRYGALKRLGATPLPKWGIIAGKS 126
Query 124 LAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIV 183
AVV VV +Q +ILGAIGFALGWRP++ L LGA +IALGT FA +GLLLGG+LRAEIV
Sbjct 127 AAVVIVVAMQTLILGAIGFALGWRPSVLGLALGAVVIALGTVTFACMGLLLGGSLRAEIV 186
Query 184 LAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVL 243
LA+AN++WF AG G++ ++ I + A++ PSGAL +AL A +V++ + +L
Sbjct 187 LALANILWFAMAGIGSVIF-ADQINDGVRIAAQIVPSGALAQALEDATGGTVNFACVAIL 245
Query 244 AVWGALAALAALRWFRF 260
A W A+ A R F+F
Sbjct 246 AAWAAVTGFVATRTFKF 262
>gi|296140213|ref|YP_003647456.1| multidrug ABC transporter inner membrane protein [Tsukamurella
paurometabola DSM 20162]
gi|296028347|gb|ADG79117.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Tsukamurella
paurometabola DSM 20162]
Length=261
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/259 (65%), Positives = 198/259 (77%), Gaps = 2/259 (0%)
Query 4 TNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
+ F AGTF+P P+P A M+AAQ +EL LLLRNGEQLLLTMFIPI LL+GLT+LP
Sbjct 3 STESRFTAGTFAPAPQPAAPAAMIAAQTRMELTLLLRNGEQLLLTMFIPIALLIGLTVLP 62
Query 64 MGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKS 123
+G T VP IMA+AV+STAFTGQAIAV FDRRYGALKRLGATPLP WG+IAGK+
Sbjct 63 IGD-DVLTIDTLVPAIMAVAVMSTAFTGQAIAVGFDRRYGALKRLGATPLPKWGVIAGKT 121
Query 124 LAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIV 183
LAVV VV LQA+ILGAIGFALGWRP L LGAG++A+G FA+LGLLLGGTL+AE+V
Sbjct 122 LAVVIVVGLQALILGAIGFALGWRPDPVGLVLGAGVLAIGVFAFASLGLLLGGTLKAEVV 181
Query 184 LAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMT-VSVDWFGIVV 242
LA+ANL+WFV + G+L + +P A +AR++PSGALTEAL +A T D FGI V
Sbjct 182 LALANLLWFVMSAIGSLVVVDRHLPDAVVLLARLSPSGALTEALIRATTGGGPDLFGIAV 241
Query 243 LAVWGALAALAALRWFRFT 261
L VWG L + AA+R FRFT
Sbjct 242 LLVWGLLGSAAAVRLFRFT 260
>gi|111024142|ref|YP_707114.1| ABC transporter permease [Rhodococcus jostii RHA1]
gi|110823672|gb|ABG98956.1| possible ABC transporter, permease component [Rhodococcus jostii
RHA1]
Length=266
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 168/257 (66%), Positives = 195/257 (76%), Gaps = 2/257 (0%)
Query 5 NRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPM 64
NR F GTF+PDPRP+ +ML AQ +LELKLLLRNGEQLLLTMFIPITLL+GL LLP+
Sbjct 12 NR--FAPGTFAPDPRPSGAAVMLRAQTALELKLLLRNGEQLLLTMFIPITLLIGLCLLPI 69
Query 65 GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSL 124
G G +R VP +M +AV+STAFTGQAIAV FDRRYGALKRLGATPLP WGIIAGKS
Sbjct 70 GDLGTSRVDKVVPAVMMVAVMSTAFTGQAIAVGFDRRYGALKRLGATPLPRWGIIAGKSA 129
Query 125 AVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVL 184
AVV VV LQ+++LGAIG ALGWRP+ L LGA IIALGT FAA+GLLLGGTLRA+IVL
Sbjct 130 AVVIVVALQSVLLGAIGLALGWRPSAWGLVLGAVIIALGTVTFAAMGLLLGGTLRADIVL 189
Query 185 AVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLA 244
A+AN++WFV G G++ + +P AR+ PSGAL AL A++ SVD +VVL
Sbjct 190 ALANILWFVMVGVGSVVFATGELPWLLHTGARLIPSGALAHALDAALSGSVDLLSVVVLV 249
Query 245 VWGALAALAALRWFRFT 261
VWGA A A R FRFT
Sbjct 250 VWGAAAGALAARTFRFT 266
>gi|333919567|ref|YP_004493148.1| putative ABC transporter membrane protein [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481788|gb|AEF40348.1| Putative ABC transporter membrane protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=271
Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/262 (59%), Positives = 182/262 (70%), Gaps = 4/262 (1%)
Query 2 TQTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTL 61
T+ FPAGTF+P P+P+ MLAAQ LEL LLLRNGEQLLLTM IPI+LL+G +
Sbjct 8 TRVTANRFPAGTFTPSPQPSRPLPMLAAQTRLELVLLLRNGEQLLLTMLIPISLLIGFAV 67
Query 62 LPMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAG 121
LP+G G +R VP I+ALA++STAFTGQAIAV FDRRYGALKRLGAT LP W II G
Sbjct 68 LPIGDLGESRTNAIVPGILALAIMSTAFTGQAIAVGFDRRYGALKRLGATALPKWAIIGG 127
Query 122 KSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAE 181
KS AVV VV LQ ++L AIG ALGWRP+L L L +ALGT FAA+GL +GG LRAE
Sbjct 128 KSCAVVLVVCLQMVLLVAIGVALGWRPSLAGLALAVPAVALGTVAFAAMGLFIGGWLRAE 187
Query 182 IVLAVANLMWFVFAGFGALTLESNVIPTAFKWV----ARVTPSGALTEALSQAMTVSVDW 237
IVLA+AN++WF AG G+L + + + F + AR+TPSGAL E+L+ A + D
Sbjct 188 IVLALANILWFALAGVGSLVIAARLYGEEFPGLAHAFARITPSGALVESLAMAFDGAADV 247
Query 238 FGIVVLAVWGALAALAALRWFR 259
G VLA W A A A R FR
Sbjct 248 TGYAVLAAWAAACAFGAFRTFR 269
>gi|319947904|ref|ZP_08022089.1| putative ABC transporter membrane protein [Dietzia cinnamea P4]
gi|319438447|gb|EFV93382.1| putative ABC transporter membrane protein [Dietzia cinnamea P4]
Length=263
Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/257 (51%), Positives = 163/257 (64%), Gaps = 2/257 (0%)
Query 5 NRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPM 64
NR F GTF+ P +V M AAQ +EL L LRNGEQLL+ + IP+ +L LT +
Sbjct 9 NR--FAPGTFARPSAPASVARMAAAQTRMELALFLRNGEQLLVALVIPVAILFALTAVEF 66
Query 65 GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSL 124
G+ R + ++ ++V+ TAFTGQAIAV FDRRYGALKRLG TPLP I+AGK L
Sbjct 67 GAVPEPRIDHAITAVLTISVMGTAFTGQAIAVGFDRRYGALKRLGGTPLPPAVIVAGKML 126
Query 125 AVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVL 184
A + +V QA+ILG I LGWRP L L+LGA +ALG+ F+++GLLLGGTLRAEIVL
Sbjct 127 ATLVLVAGQAVILGVIAAVLGWRPDLAGLSLGAVAVALGSVAFSSMGLLLGGTLRAEIVL 186
Query 185 AVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLA 244
A+ANL+WFV G L + +PTA + V PS ALT AL A V + LA
Sbjct 187 ALANLIWFVLIGGAGLAIGVVDLPTAVHDLLVVVPSYALTTALVTATGGGVPALAALSLA 246
Query 245 VWGALAALAALRWFRFT 261
+W A+ A+R F FT
Sbjct 247 LWTAVCGGFAVRHFSFT 263
>gi|296117939|ref|ZP_06836522.1| ABC-type efflux system, permease protein [Corynebacterium ammoniagenes
DSM 20306]
gi|295969170|gb|EFG82412.1| ABC-type efflux system, permease protein [Corynebacterium ammoniagenes
DSM 20306]
Length=269
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/255 (47%), Positives = 165/255 (65%), Gaps = 5/255 (1%)
Query 7 PAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPM-G 65
P+F GTF+PD + +++ M+ AQ ++E KL+LR+GEQ LL++ IP+ LL+ + P+
Sbjct 17 PSFAPGTFTPDAKASSISTMITAQGAMEAKLMLRHGEQQLLSIIIPLGLLIAFRVFPITD 76
Query 66 SFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLA 125
SFG AA +P++ A+A S FTGQAIAVAFDRRYGALKR GA+ +P W IIAGK +A
Sbjct 77 SFGGIDAA--IPMVFAVAATSAGFTGQAIAVAFDRRYGALKRSGASGVPAWAIIAGKIIA 134
Query 126 VVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLA 185
V A+V LQ I+LG F LG+R ++ + L ++ LG A F ALGL LGG+L AEIVLA
Sbjct 135 VFAMVCLQVIVLGTASFLLGFRAPVSGILLAFVVLLLGVAAFTALGLTLGGSLSAEIVLA 194
Query 186 VANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAV 245
++NL+WF+ TL S + W+ + PS AL L +A+ S + L +
Sbjct 195 LSNLIWFILLAIVGWTLYSQGL-IDVGWL-NLIPSVALASGLVEALAGSFPTIPFLALIL 252
Query 246 WGALAALAALRWFRF 260
W +A+ AA +WFRF
Sbjct 253 WAIVASFAASKWFRF 267
>gi|227549234|ref|ZP_03979283.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium lipophiloflavum DSM 44291]
gi|227078688|gb|EEI16651.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium lipophiloflavum DSM 44291]
Length=257
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/252 (49%), Positives = 161/252 (64%), Gaps = 5/252 (1%)
Query 12 GTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPM-GSFGHN 70
GTF+P PR +V M AQ +E L+LR+GEQLLL + IP +LV LP+ G+
Sbjct 8 GTFTPRPRRASVTRMALAQGRIEALLMLRHGEQLLLNLIIPAVILVAAAKLPIPGADSPA 67
Query 71 RAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVAVV 130
R VPV+ A+A S FTGQAIA+AFDRRYGALKR GA+ +P W IIAGK L V+A+V
Sbjct 68 RLDHLVPVVFAVAASSAGFTGQAIALAFDRRYGALKRTGASGVPAWTIIAGKILGVLAMV 127
Query 131 FLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVANLM 190
+Q ++LGAI ALGWR + G + LG A F ALGLLLGGT+ +E+VLA+ANL+
Sbjct 128 AVQIVVLGAIAVALGWRVPVGGALFGGVTLLLGVACFTALGLLLGGTMSSELVLALANLL 187
Query 191 WFVFAG-FGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGAL 249
W + G G +T N++ + + P+ AL AL+QA+ +SVD + L VW A+
Sbjct 188 WLILVGILGWVTYSGNLVEAGWY---NLVPTVALAGALTQALHLSVDSGAWIALTVWVAV 244
Query 250 AALAALRWFRFT 261
A AA RWFRF
Sbjct 245 AVTAAARWFRFD 256
>gi|25028246|ref|NP_738300.1| hypothetical protein CE1690 [Corynebacterium efficiens YS-314]
gi|259507305|ref|ZP_05750205.1| ABC efflux system, permease protein [Corynebacterium efficiens
YS-314]
gi|23493530|dbj|BAC18500.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259165109|gb|EEW49663.1| ABC efflux system, permease protein [Corynebacterium efficiens
YS-314]
Length=262
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 120/260 (47%), Positives = 159/260 (62%), Gaps = 5/260 (1%)
Query 4 TNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLP 63
TN FPAGTF+P PR + ML AQ +E L LR+GEQ LL +F+P+ L+ L
Sbjct 3 TNESRFPAGTFAPAPRRASPARMLLAQGRVESLLFLRHGEQQLLNLFLPLVGLIALARFD 62
Query 64 M--GSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAG 121
+ G + A F P IMA+A +S+ FTGQAI++AFDRRYGALKR GA+ +P W I+ G
Sbjct 63 LVPGDSDSSLAVAF-PFIMAVASMSSGFTGQAISLAFDRRYGALKRTGASGVPAWTIVFG 121
Query 122 KSLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAE 181
K +AV+AV +Q +ILG LGWR ++T LG + +G A F ALGLL+GGTL +E
Sbjct 122 KVIAVLAVTVVQILILGTTALILGWRTSVTGALLGILTLLIGVAAFTALGLLMGGTLSSE 181
Query 182 IVLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIV 241
+VLA+ANL+W V G A + S + V PS AL + +S A + W +
Sbjct 182 LVLALANLIWVVLTGIAAWAVFSPEVNA--DGALSVIPSVALAQGISNAFAGDLPWLQLG 239
Query 242 VLAVWGALAALAALRWFRFT 261
+L VW A+A AA RWF FT
Sbjct 240 ILLVWLAVAGFAANRWFSFT 259
>gi|227833036|ref|YP_002834743.1| putative ABC transport system, permease protein [Corynebacterium
aurimucosum ATCC 700975]
gi|262182476|ref|ZP_06041897.1| putative ABC transport system, permease protein [Corynebacterium
aurimucosum ATCC 700975]
gi|227454052|gb|ACP32805.1| putative ABC transport system, permease protein [Corynebacterium
aurimucosum ATCC 700975]
Length=253
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 110/252 (44%), Positives = 157/252 (63%), Gaps = 4/252 (1%)
Query 9 FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFG 68
+ GTFSP P+ V M AQ ++E KL+LR+GEQ LL++ IP+ +L+G L + G
Sbjct 4 YAPGTFSPHPQRVGVATMARAQGAIESKLMLRHGEQQLLSIIIPLAILIGAAKLK-DTTG 62
Query 69 HNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVA 128
H F P+++A+A S+ FTGQAI++AFDRRYGALKR GA+ +P W I+ GK L V++
Sbjct 63 HGVDEVF-PMVLAVAATSSGFTGQAISLAFDRRYGALKRTGASGVPAWAIVVGKILGVLS 121
Query 129 VVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVAN 188
+V LQ ++LG + LG R ++ +G + LG A F ALGLLLGGT +E+VLAVAN
Sbjct 122 MVVLQVLVLGTVAAILGLRVSVVGAAIGVLTLVLGVATFTALGLLLGGTFSSEVVLAVAN 181
Query 189 LMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGA 248
L+WF+ G + S + V + P+ A+ L A+ S ++VL W A
Sbjct 182 LIWFLLLGAVGWAMFSQGLGD--NGVLTLVPTVAMAAGLDTALNGSFPGIELLVLVGWAA 239
Query 249 LAALAALRWFRF 260
+A+ AA+RWFRF
Sbjct 240 VASFAAVRWFRF 251
>gi|38233885|ref|NP_939652.1| hypothetical protein DIP1299 [Corynebacterium diphtheriae NCTC
13129]
gi|38200146|emb|CAE49827.1| Putative membrane protein [Corynebacterium diphtheriae]
Length=265
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/259 (42%), Positives = 157/259 (61%), Gaps = 3/259 (1%)
Query 3 QTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLL 62
Q+ FPAG F P P ++ ML +Q +E KL LR+GEQ+LL+ IP+ +V ++ L
Sbjct 9 QSTVSRFPAGIFEPHPVQASILKMLTSQGRIEAKLFLRHGEQILLSFVIPVISIVAISFL 68
Query 63 PMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGK 122
+ T +PV++ +A +S+ FTGQAI++AFDRRYGAL+R+GA+ +P W I+ GK
Sbjct 69 HIVDEPTPLLVT-LPVMLTMASLSSGFTGQAISLAFDRRYGALQRVGASGVPSWTIVLGK 127
Query 123 SLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEI 182
+ V+ V LQ +++ I FALGWR +A G + LG A F ALGLL+GGTL +E+
Sbjct 128 VIGVLTVSILQVLVISCIAFALGWRVTPSAYFCGMAVFFLGVATFTALGLLMGGTLSSEL 187
Query 183 VLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVV 242
VL +ANL+WF G + + N ++ W++ + PS A+ + +S A V V+
Sbjct 188 VLGLANLIWFGLIGIVSFVVFRNGSESS-TWMS-IVPSVAVGKGMSLAFAGIVPIKECVI 245
Query 243 LAVWGALAALAALRWFRFT 261
L W L AL A RWF+F
Sbjct 246 LLFWLVLGALGATRWFKFN 264
>gi|225021391|ref|ZP_03710583.1| hypothetical protein CORMATOL_01410 [Corynebacterium matruchotii
ATCC 33806]
gi|224945773|gb|EEG26982.1| hypothetical protein CORMATOL_01410 [Corynebacterium matruchotii
ATCC 33806]
Length=252
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/252 (43%), Positives = 148/252 (59%), Gaps = 4/252 (1%)
Query 9 FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFG 68
FPAGTF PDP + ML AQ +E KL LR+GEQLLL+ IP+ +LV +TLLP+
Sbjct 3 FPAGTFRPDPHRASTRTMLRAQAIIEAKLFLRHGEQLLLSFIIPVCMLVAITLLPVIEQD 62
Query 69 HNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVA 128
F P+++A+A +S+ FTG+AI++AFDRRYGALKR GA+ +PV II GK L +VA
Sbjct 63 DPMRVGF-PIVLAVAAMSSGFTGEAISLAFDRRYGALKRTGASGVPVGIIIVGKILGLVA 121
Query 129 VVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVAN 188
V +Q I+L I LGW P + G + G F +LG+L+GGTL +E+VL AN
Sbjct 122 VAIIQIIVLTTIALLLGWSPTPEGILTGVLVFLTGITAFTSLGMLMGGTLSSELVLGFAN 181
Query 189 LMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGA 248
L+W + AG + L ++ F + PS AL L + ++ LA W
Sbjct 182 LIWVLLAGGASYLLVNH---DTFPPILTAVPSVALASGLLDSFDGIFPGMALISLAGWTI 238
Query 249 LAALAALRWFRF 260
+ AA RWF+F
Sbjct 239 IGVTAATRWFKF 250
>gi|317505954|ref|ZP_07963786.1| DrrB family ABC transporter efflux protein [Segniliparus rugosus
ATCC BAA-974]
gi|316255730|gb|EFV14968.1| DrrB family ABC transporter efflux protein [Segniliparus rugosus
ATCC BAA-974]
Length=254
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/253 (56%), Positives = 176/253 (70%), Gaps = 2/253 (0%)
Query 8 AFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSF 67
AFP GTF+PDP+P+ LAAQ EL L LR+GEQLLL +FIP+ LLVG+ +LP+GS
Sbjct 3 AFPPGTFAPDPKPSPAVRALAAQTKFELMLFLRHGEQLLLNLFIPVMLLVGIDVLPLGSV 62
Query 68 GHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVV 127
G PV+MALAV+S+AFTGQAIAVAFDRRYGALKR AT + +IAGK LAVV
Sbjct 63 GWATIDRVAPVVMALAVVSSAFTGQAIAVAFDRRYGALKRYAATSVGRGTLIAGKVLAVV 122
Query 128 AVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVA 187
VV LQ++++G + LGWRP+ L + ++ALGTA FAA GLLLGG ++AEIVLA A
Sbjct 123 VVVALQSVVIGTVAALLGWRPSAEGLLIAVPVLALGTAAFAAGGLLLGGAVKAEIVLAGA 182
Query 188 NLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWG 247
N++WF+ G L L S P W+ ++ PS AL ALS A+ + +D F +VVLAVW
Sbjct 183 NVLWFLMLGVCGLALSSA--PGWHSWLLKIVPSEALASALSAALQLRLDVFCVVVLAVWA 240
Query 248 ALAALAALRWFRF 260
+ A AA RWFRF
Sbjct 241 VVLAWAARRWFRF 253
>gi|334696933|gb|AEG81730.1| putative membrane protein [Corynebacterium ulcerans 809]
Length=266
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/254 (43%), Positives = 166/254 (66%), Gaps = 5/254 (1%)
Query 9 FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFG 68
FP GTF+P+P+ +V M+ +Q +E KL LR+GEQ LL+ IP+ +L+ L LP+
Sbjct 16 FPPGTFTPNPQRASVARMVWSQGFVEAKLFLRHGEQQLLSFIIPLGMLLALAYLPLLDDP 75
Query 69 HNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVA 128
+ F P+++ALA +S+ FTGQAI++AFDRRYGAL+R GA+ +P W I++GK L V++
Sbjct 76 NPLTKGF-PMMLALASMSSGFTGQAISLAFDRRYGALQRTGASGVPSWTIVSGKVLGVLS 134
Query 129 VVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVAN 188
V F+Q ++LGA+ ALGW T + +G + +G A F +LGLL+GGTL +E+VL +AN
Sbjct 135 VSFIQIVLLGAVALALGWTSTATGIVIGLLVFFIGVAAFTSLGLLMGGTLSSELVLGLAN 194
Query 189 LMWFVFAGFGALTL-ESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWG 247
L+W V G + L +S+ PT W+ ++ PS AL++ L S +++L W
Sbjct 195 LIWVVLVGVASYILFQSSAEPTT--WL-KLIPSVALSDGLYSGFRGSFPTTDVIILLGWL 251
Query 248 ALAALAALRWFRFT 261
+L ++ A RWF+F+
Sbjct 252 SLGSVMANRWFKFS 265
>gi|305681198|ref|ZP_07404005.1| ABC transporter efflux protein, DrrB family [Corynebacterium
matruchotii ATCC 14266]
gi|305659403|gb|EFM48903.1| ABC transporter efflux protein, DrrB family [Corynebacterium
matruchotii ATCC 14266]
Length=252
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/252 (43%), Positives = 147/252 (59%), Gaps = 4/252 (1%)
Query 9 FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFG 68
FPAGTF PDP + ML AQ +E KL LR+GEQLLL+ IP+ +LV +TLLP+
Sbjct 3 FPAGTFRPDPHRASTRTMLRAQAIIEAKLFLRHGEQLLLSFIIPVCMLVAITLLPVIEQD 62
Query 69 HNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVA 128
F P+++A+A +S+ FTG+AI++AFDRRYGALKR GA+ +P II GK L +VA
Sbjct 63 DPMRVGF-PIVLAVAAMSSGFTGEAISLAFDRRYGALKRTGASGVPAGIIIVGKILGLVA 121
Query 129 VVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVAN 188
V +Q I+L I LGW P + G + G F +LG+L+GGTL +E+VL AN
Sbjct 122 VAIIQIIVLTTIALLLGWSPTPEGILTGVLVFLTGITAFTSLGMLMGGTLSSELVLGFAN 181
Query 189 LMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGA 248
L+W + AG + L ++ F + PS AL L + ++ LA W
Sbjct 182 LIWVLLAGGASYLLVNH---DTFPPILTAVPSVALASGLLDSFDGIFPGMALISLAGWTI 238
Query 249 LAALAALRWFRF 260
+ AA RWF+F
Sbjct 239 IGVTAATRWFKF 250
>gi|213965621|ref|ZP_03393815.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Corynebacterium
amycolatum SK46]
gi|213951780|gb|EEB63168.1| ABC drug efflux pump, inner membrane subunit, DrrB family [Corynebacterium
amycolatum SK46]
Length=267
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/259 (44%), Positives = 162/259 (63%), Gaps = 1/259 (0%)
Query 3 QTNRPAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLL 62
+ + F GTF+P P+ + + ++ +Q LE KL R+GEQ+LLT+ IP+ +L+GL ++
Sbjct 6 RADASRFAKGTFAPAPQRSDMAKLVMSQAWLETKLFWRHGEQMLLTIIIPLAMLIGLVMV 65
Query 63 PMGSFGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGK 122
P+ H F P+++A++V+S FTGQAIAV FDRRYGALKR+GA+ +P WGIIAGK
Sbjct 66 PVFELDHPLERIF-PMVLAISVMSAGFTGQAIAVGFDRRYGALKRIGASGVPPWGIIAGK 124
Query 123 SLAVVAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEI 182
++V V LQ I+ +G ALG ++ L + LGT F +LGLL+GGTL AE+
Sbjct 125 IVSVCTTVTLQYILFSLVGLALGAELSIGGWLLAYVGMLLGTFVFTSLGLLMGGTLGAEL 184
Query 183 VLAVANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVV 242
+L +ANL+WF+ G + + + + PS ALT+ +S A+ +SV W + V
Sbjct 185 ILGLANLIWFILIGATTYVAVAPSLDGISSVLLHLLPSVALTDVISAALAMSVHWSAVGV 244
Query 243 LAVWGALAALAALRWFRFT 261
L VWG L A A RWFRF
Sbjct 245 LIVWGVLGAALAARWFRFD 263
>gi|337290818|ref|YP_004629839.1| hypothetical protein CULC22_01210 [Corynebacterium ulcerans BR-AD22]
gi|334699124|gb|AEG83920.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=266
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/254 (43%), Positives = 164/254 (65%), Gaps = 5/254 (1%)
Query 9 FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFG 68
FP GTF+P+P+ +V M+ +Q +E KL LR+GEQ LL+ IP+ +L+ L LP+
Sbjct 16 FPPGTFTPNPQRASVARMVWSQGFVEAKLFLRHGEQQLLSFIIPLGMLLALAYLPLLDDP 75
Query 69 HNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVA 128
+ F P+++ALA +S+ FTGQAI++AFDRRYGAL+R GA+ +P W I++GK L V++
Sbjct 76 NPLTKGF-PMMLALASMSSGFTGQAISLAFDRRYGALQRTGASGVPSWTIVSGKVLGVLS 134
Query 129 VVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVAN 188
V F+Q ++LGA+ ALGW T + +G + +G A F +LGLL+GGTL +E+VL +AN
Sbjct 135 VSFIQIVVLGAVALALGWTSTATGIVIGLLVFFIGVAAFTSLGLLMGGTLSSELVLGLAN 194
Query 189 LMWFVFAGFGALTL-ESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWG 247
L+W V G + L + PT W+ ++ PS AL++ L S +++L W
Sbjct 195 LIWVVLVGVASYILFRGSAEPTT--WL-KLIPSVALSDGLYSGFRGSFPTTDLIILLGWL 251
Query 248 ALAALAALRWFRFT 261
+L ++ A RWF+F+
Sbjct 252 SLGSVMANRWFKFS 265
>gi|227503590|ref|ZP_03933639.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium accolens ATCC 49725]
gi|227075626|gb|EEI13589.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium accolens ATCC 49725]
Length=254
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/253 (43%), Positives = 153/253 (61%), Gaps = 4/253 (1%)
Query 9 FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFG 68
F GTFSP P+ + ++ AQ +E KL+LR+GEQ LL++ IP+ +L+G L S G
Sbjct 5 FSPGTFSPAPKRASAGAIIFAQGGMEAKLMLRHGEQQLLSIIIPLAILIGTARLE-SSTG 63
Query 69 HNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVA 128
H F P+++A+A S FTGQAI++AFDRRYGALKR GA+ +P W II GK + V+
Sbjct 64 HGLHEVF-PMVLAVAATSAGFTGQAISLAFDRRYGALKRTGASGVPAWAIIGGKIIGVLT 122
Query 129 VVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVAN 188
+V Q ++LGA FALG R + + L + G A F A+GL+LGGTL +E VLA+AN
Sbjct 123 MVVFQILVLGATAFALGLRISAPGILLMIVSLIFGVAAFTAMGLVLGGTLSSEAVLALAN 182
Query 189 LMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGA 248
L+WF+ L S + + + P+ AL AL+ A + ++ L W A
Sbjct 183 LIWFILLAIVGWALYSQGLGD--NGLLNIVPTVALAGALADASNSTFPGIELISLTAWLA 240
Query 249 LAALAALRWFRFT 261
+A+ AA+RWFRF
Sbjct 241 VASYAAVRWFRFD 253
>gi|291003575|ref|ZP_06561548.1| putative ABC-2 type transport system permease protein [Saccharopolyspora
erythraea NRRL 2338]
Length=266
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/225 (51%), Positives = 149/225 (67%), Gaps = 0/225 (0%)
Query 7 PAFPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGS 66
P FPAGTF P P MLAA +E L+LR+GEQ LLT+ IP+ LL+GL+ L +G+
Sbjct 9 PRFPAGTFRPSPGRGRPGRMLAAHTRIEALLILRHGEQALLTLIIPLALLIGLSTLHIGT 68
Query 67 FGHNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAV 126
R + +P I+ALAV+STAFTGQAIA+ FDRRYG +KRL AT LP W +I+G+ LA
Sbjct 69 VPEPRVDSVMPRILALAVMSTAFTGQAIALGFDRRYGVIKRLSATALPRWVLISGRVLAT 128
Query 127 VAVVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAV 186
+ VV LQA++LG LGW P+ L ++ LGT F A G+L+GGTLRAEIVLA+
Sbjct 129 LVVVALQAVVLGVAAALLGWTPSPVGLLAAVPLLVLGTLAFGAAGVLVGGTLRAEIVLAL 188
Query 187 ANLMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAM 231
AN +WFV G L L ++ +P +A + PSGAL E+L A+
Sbjct 189 ANAVWFVLLLAGGLALPASDLPGPLSAIAGLLPSGALAESLDAAL 233
>gi|306836148|ref|ZP_07469134.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium accolens ATCC 49726]
gi|304567998|gb|EFM43577.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium accolens ATCC 49726]
Length=254
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 107/253 (43%), Positives = 152/253 (61%), Gaps = 4/253 (1%)
Query 9 FPAGTFSPDPRPNAVPLMLAAQFSLELKLLLRNGEQLLLTMFIPITLLVGLTLLPMGSFG 68
F GTF P P+ + ++ AQ +E KL+LR+GEQ LL++ IP+ +L+G L S G
Sbjct 5 FSPGTFRPAPKRASAGAIILAQGGMEAKLMLRHGEQQLLSIIIPLAILIGTARLE-SSTG 63
Query 69 HNRAATFVPVIMALAVISTAFTGQAIAVAFDRRYGALKRLGATPLPVWGIIAGKSLAVVA 128
H F P+++A+A S FTGQAI++AFDRRYGALKR GA+ +P W II GK + V+
Sbjct 64 HGLHEVF-PMVLAVAATSAGFTGQAISLAFDRRYGALKRTGASGVPAWAIIGGKIIGVLT 122
Query 129 VVFLQAIILGAIGFALGWRPALTALTLGAGIIALGTAGFAALGLLLGGTLRAEIVLAVAN 188
+V Q ++LGA FALG R + + L + G A F A+GL+LGGTL +E VLA+AN
Sbjct 123 MVVFQILVLGATAFALGLRISAPGILLMIVSLIFGVAAFTAMGLVLGGTLSSEAVLALAN 182
Query 189 LMWFVFAGFGALTLESNVIPTAFKWVARVTPSGALTEALSQAMTVSVDWFGIVVLAVWGA 248
L+WF+ L S + + + P+ AL AL+ A + ++ L W A
Sbjct 183 LIWFILLAIVGWALYSQGLGD--NGLLNIVPTVALAGALADASNSTFPGIELISLTAWLA 240
Query 249 LAALAALRWFRFT 261
+A+ AA+RWFRF
Sbjct 241 VASYAAVRWFRFD 253
Lambda K H
0.328 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 388543189928
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40