BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1460 Length=268 Score E Sequences producing significant alignments: (Bits) Value gi|15840920|ref|NP_335957.1| hypothetical protein MT1507 [Mycoba... 532 2e-149 gi|57116868|ref|NP_215976.2| transcriptional regulatory protein ... 531 3e-149 gi|254231694|ref|ZP_04925021.1| hypothetical protein TBCG_01436 ... 531 5e-149 gi|167967410|ref|ZP_02549687.1| hypothetical protein MtubH3_0498... 530 6e-149 gi|31792654|ref|NP_855147.1| transcriptional regulatory protein ... 530 1e-148 gi|298524967|ref|ZP_07012376.1| transcriptional regulatory prote... 530 1e-148 gi|121637390|ref|YP_977613.1| putative transcriptional regulator... 528 3e-148 gi|308231847|ref|ZP_07413984.2| transcriptional regulator [Mycob... 511 3e-143 gi|217069502|gb|ACJ83238.1| Rv1460 antigen [Mycobacterium tuberc... 504 6e-141 gi|289761618|ref|ZP_06520996.1| hypothetical transcriptional reg... 440 1e-121 gi|308369447|ref|ZP_07417805.2| transcriptional regulator [Mycob... 436 1e-120 gi|240171375|ref|ZP_04750034.1| transcriptional regulatory prote... 397 1e-108 gi|342858750|ref|ZP_08715405.1| DNA-binding protein [Mycobacteri... 394 1e-107 gi|118617466|ref|YP_905798.1| transcriptional regulatory protein... 390 1e-106 gi|183982278|ref|YP_001850569.1| transcriptional regulatory prot... 387 7e-106 gi|15827238|ref|NP_301501.1| DNA-binding protein [Mycobacterium ... 386 1e-105 gi|41407284|ref|NP_960120.1| hypothetical protein MAP1186 [Mycob... 381 7e-104 gi|296170680|ref|ZP_06852255.1| DNA-binding protein [Mycobacteri... 380 9e-104 gi|254821670|ref|ZP_05226671.1| DNA-binding protein [Mycobacteri... 372 2e-101 gi|118466484|ref|YP_882501.1| DNA-binding protein [Mycobacterium... 372 4e-101 gi|336458013|gb|EGO37000.1| putative transcriptional regulator [... 369 2e-100 gi|169629834|ref|YP_001703483.1| transcriptional regulatory prot... 320 2e-85 gi|120403716|ref|YP_953545.1| putative transcriptional regulator... 318 7e-85 gi|118470796|ref|YP_887436.1| DNA-binding protein [Mycobacterium... 315 4e-84 gi|145224262|ref|YP_001134940.1| putative transcriptional regula... 315 5e-84 gi|126435055|ref|YP_001070746.1| transcriptional regulator [Myco... 314 8e-84 gi|108799402|ref|YP_639599.1| transcriptional regulator [Mycobac... 313 2e-83 gi|289757569|ref|ZP_06516947.1| transcriptional regulatory prote... 312 3e-83 gi|333990895|ref|YP_004523509.1| transcriptional regulator [Myco... 311 9e-83 gi|315444597|ref|YP_004077476.1| transcriptional regulator [Myco... 310 1e-82 gi|226366392|ref|YP_002784175.1| SufR family transcriptional reg... 288 8e-76 gi|111024145|ref|YP_707117.1| transcriptional regulator [Rhodoco... 288 9e-76 gi|325676698|ref|ZP_08156372.1| DNA-binding protein [Rhodococcus... 287 1e-75 gi|229493521|ref|ZP_04387306.1| transcriptional regulatory prote... 287 1e-75 gi|312139626|ref|YP_004006962.1| arsr family transcriptional reg... 287 1e-75 gi|226306541|ref|YP_002766501.1| hypothetical protein RER_30540 ... 286 2e-75 gi|54025531|ref|YP_119773.1| putative DNA-binding protein [Nocar... 262 4e-68 gi|262202309|ref|YP_003273517.1| ArsR family transcriptional reg... 253 3e-65 gi|343924599|ref|ZP_08764147.1| putative SufR family transcripti... 230 1e-58 gi|296117935|ref|ZP_06836518.1| putative DNA-binding transcripti... 221 1e-55 gi|227833039|ref|YP_002834746.1| ArsR transcriptional regulator ... 219 3e-55 gi|38233881|ref|NP_939648.1| putative DNA-binding protein [Coryn... 218 6e-55 gi|319947901|ref|ZP_08022086.1| hypothetical protein ES5_01186 [... 218 9e-55 gi|213965607|ref|ZP_03393801.1| transcriptional regulatory prote... 217 2e-54 gi|25028243|ref|NP_738297.1| hypothetical protein CE1687 [Coryne... 216 2e-54 gi|326382206|ref|ZP_08203898.1| regulatory protein ArsR [Gordoni... 216 2e-54 gi|300858512|ref|YP_003783495.1| ArsR family transcriptional reg... 215 6e-54 gi|308276466|gb|ADO26365.1| Iron-sulfur cluster biosynthesis tra... 214 8e-54 gi|227504376|ref|ZP_03934425.1| possible transcriptional regulat... 213 2e-53 gi|334696930|gb|AEG81727.1| ArsR-family transcription regulator ... 213 3e-53 >gi|15840920|ref|NP_335957.1| hypothetical protein MT1507 [Mycobacterium tuberculosis CDC1551] gi|13881124|gb|AAK45771.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] Length=278 Score = 532 bits (1371), Expect = 2e-149, Method: Compositional matrix adjust. Identities = 268/268 (100%), Positives = 268/268 (100%), Gaps = 0/268 (0%) Query 1 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG Sbjct 11 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 70 Query 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY Sbjct 71 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 130 Query 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA Sbjct 131 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 190 Query 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG Sbjct 191 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 250 Query 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 DCACTTHVPLSPAPSPRPPATSTEGASR Sbjct 251 DCACTTHVPLSPAPSPRPPATSTEGASR 278 >gi|57116868|ref|NP_215976.2| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|148661252|ref|YP_001282775.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148822679|ref|YP_001287433.1| transcriptional regulator [Mycobacterium tuberculosis F11] 31 more sequence titles Length=268 Score = 531 bits (1369), Expect = 3e-149, Method: Compositional matrix adjust. Identities = 267/268 (99%), Positives = 268/268 (100%), Gaps = 0/268 (0%) Query 1 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 +TSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG Sbjct 1 MTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 Query 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY Sbjct 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 Query 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA Sbjct 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 Query 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG Sbjct 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 Query 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 DCACTTHVPLSPAPSPRPPATSTEGASR Sbjct 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 >gi|254231694|ref|ZP_04925021.1| hypothetical protein TBCG_01436 [Mycobacterium tuberculosis C] gi|124600753|gb|EAY59763.1| hypothetical protein TBCG_01436 [Mycobacterium tuberculosis C] gi|323720031|gb|EGB29142.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length=308 Score = 531 bits (1367), Expect = 5e-149, Method: Compositional matrix adjust. Identities = 268/268 (100%), Positives = 268/268 (100%), Gaps = 0/268 (0%) Query 1 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG Sbjct 41 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 100 Query 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY Sbjct 101 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 160 Query 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA Sbjct 161 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 220 Query 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG Sbjct 221 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 280 Query 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 DCACTTHVPLSPAPSPRPPATSTEGASR Sbjct 281 DCACTTHVPLSPAPSPRPPATSTEGASR 308 >gi|167967410|ref|ZP_02549687.1| hypothetical protein MtubH3_04982 [Mycobacterium tuberculosis H37Ra] Length=268 Score = 530 bits (1366), Expect = 6e-149, Method: Compositional matrix adjust. Identities = 266/268 (99%), Positives = 268/268 (100%), Gaps = 0/268 (0%) Query 1 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 +TSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG Sbjct 1 MTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 Query 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY Sbjct 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 Query 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 DDLAS+AMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA Sbjct 121 DDLASSAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 Query 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG Sbjct 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 Query 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 DCACTTHVPLSPAPSPRPPATSTEGASR Sbjct 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 >gi|31792654|ref|NP_855147.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|289574139|ref|ZP_06454366.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|339631527|ref|YP_004723169.1| transcriptional regulator [Mycobacterium africanum GM041182] gi|31618244|emb|CAD96162.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] gi|289538570|gb|EFD43148.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|339330883|emb|CCC26554.1| putative transcriptional regulatory protein [Mycobacterium africanum GM041182] Length=268 Score = 530 bits (1364), Expect = 1e-148, Method: Compositional matrix adjust. Identities = 266/268 (99%), Positives = 267/268 (99%), Gaps = 0/268 (0%) Query 1 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 +TSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG Sbjct 1 MTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 Query 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY Sbjct 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 Query 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA Sbjct 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 Query 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG Sbjct 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 Query 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 DCACTTHVPLSPAPSPRPPATSTEG SR Sbjct 241 DCACTTHVPLSPAPSPRPPATSTEGVSR 268 >gi|298524967|ref|ZP_07012376.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|298494761|gb|EFI30055.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] Length=268 Score = 530 bits (1364), Expect = 1e-148, Method: Compositional matrix adjust. Identities = 266/268 (99%), Positives = 267/268 (99%), Gaps = 0/268 (0%) Query 1 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 +TSTTLPHRASLVDRSTEFCHTDVVKIPAVST VPAAVSDGHTRRAIVRLLLESGSITAG Sbjct 1 MTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTIVPAAVSDGHTRRAIVRLLLESGSITAG 60 Query 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY Sbjct 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 Query 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA Sbjct 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 Query 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG Sbjct 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 Query 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 DCACTTHVPLSPAPSPRPPATSTEGASR Sbjct 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 >gi|121637390|ref|YP_977613.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989865|ref|YP_002644552.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121493037|emb|CAL71508.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772978|dbj|BAH25784.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341601409|emb|CCC64082.1| probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=268 Score = 528 bits (1361), Expect = 3e-148, Method: Compositional matrix adjust. Identities = 265/268 (99%), Positives = 266/268 (99%), Gaps = 0/268 (0%) Query 1 VTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 +TSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG Sbjct 1 MTSTTLPHRASLVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAG 60 Query 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY Sbjct 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 Query 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA Sbjct 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 Query 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 GYVATTTRVGGPIHGVQ CQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG Sbjct 181 GYVATTTRVGGPIHGVQFCQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 Query 241 DCACTTHVPLSPAPSPRPPATSTEGASR 268 DCACTTHVPLSPAPSPRPPATSTEG SR Sbjct 241 DCACTTHVPLSPAPSPRPPATSTEGVSR 268 >gi|308231847|ref|ZP_07413984.2| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308378943|ref|ZP_07484417.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308380083|ref|ZP_07488646.2| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308215871|gb|EFO75270.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308358742|gb|EFP47593.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308362670|gb|EFP51521.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] Length=257 Score = 511 bits (1317), Expect = 3e-143, Method: Compositional matrix adjust. Identities = 256/257 (99%), Positives = 257/257 (100%), Gaps = 0/257 (0%) Query 12 LVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAA 71 +VDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAA Sbjct 1 MVDRSTEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAA 60 Query 72 GVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQL 131 GVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQL Sbjct 61 GVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQL 120 Query 132 REIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGG 191 REIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGG Sbjct 121 REIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGG 180 Query 192 PIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLS 251 PIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLS Sbjct 181 PIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLS 240 Query 252 PAPSPRPPATSTEGASR 268 PAPSPRPPATSTEGASR Sbjct 241 PAPSPRPPATSTEGASR 257 >gi|217069502|gb|ACJ83238.1| Rv1460 antigen [Mycobacterium tuberculosis] Length=253 Score = 504 bits (1298), Expect = 6e-141, Method: Compositional matrix adjust. Identities = 253/253 (100%), Positives = 253/253 (100%), Gaps = 0/253 (0%) Query 16 STEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRR 75 STEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRR Sbjct 1 STEFCHTDVVKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRR 60 Query 76 HLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIG 135 HLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIG Sbjct 61 HLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIG 120 Query 136 GEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHG 195 GEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHG Sbjct 121 GEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHG 180 Query 196 VQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPS 255 VQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPS Sbjct 181 VQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPS 240 Query 256 PRPPATSTEGASR 268 PRPPATSTEGASR Sbjct 241 PRPPATSTEGASR 253 >gi|289761618|ref|ZP_06520996.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|289709124|gb|EFD73140.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|339294435|gb|AEJ46546.1| hypothetical protein CCDC5079_1356 [Mycobacterium tuberculosis CCDC5079] gi|339298073|gb|AEJ50183.1| hypothetical protein CCDC5180_1346 [Mycobacterium tuberculosis CCDC5180] Length=221 Score = 440 bits (1131), Expect = 1e-121, Method: Compositional matrix adjust. Identities = 220/221 (99%), Positives = 221/221 (100%), Gaps = 0/221 (0%) Query 48 VRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYR 107 +RLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYR Sbjct 1 MRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYR 60 Query 108 LTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALE 167 LTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALE Sbjct 61 LTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALE 120 Query 168 AAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVL 227 AAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVL Sbjct 121 AAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVL 180 Query 228 GTHVQRLATIVNGDCACTTHVPLSPAPSPRPPATSTEGASR 268 GTHVQRLATIVNGDCACTTHVPLSPAPSPRPPATSTEGASR Sbjct 181 GTHVQRLATIVNGDCACTTHVPLSPAPSPRPPATSTEGASR 221 >gi|308369447|ref|ZP_07417805.2| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308370728|ref|ZP_07422520.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308371970|ref|ZP_07426887.2| transcriptional regulator [Mycobacterium tuberculosis SUMu004] 13 more sequence titles Length=221 Score = 436 bits (1122), Expect = 1e-120, Method: Compositional matrix adjust. Identities = 219/221 (99%), Positives = 220/221 (99%), Gaps = 0/221 (0%) Query 48 VRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYR 107 +RLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYR Sbjct 1 MRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYR 60 Query 108 LTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALE 167 LTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALE Sbjct 61 LTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALE 120 Query 168 AAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVL 227 AAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVL Sbjct 121 AAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVL 180 Query 228 GTHVQRLATIVNGDCACTTHVPLSPAPSPRPPATSTEGASR 268 GTHVQRLATIVNGDCACTTHVPLS APSPRPPATSTEGASR Sbjct 181 GTHVQRLATIVNGDCACTTHVPLSLAPSPRPPATSTEGASR 221 >gi|240171375|ref|ZP_04750034.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=221 Score = 397 bits (1020), Expect = 1e-108, Method: Compositional matrix adjust. Identities = 198/220 (90%), Positives = 206/220 (94%), Gaps = 0/220 (0%) Query 48 VRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYR 107 +RLLLESGSITA EIGDRLGLSAAGVRRHLDALIE GDAE+ AAPWQQ GRGRPAKRYR Sbjct 1 MRLLLESGSITASEIGDRLGLSAAGVRRHLDALIETGDAESVPAAPWQQAGRGRPAKRYR 60 Query 108 LTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALE 167 LTAAGR KLDHSYDDLASAAMRQLREIGGE+AVRTFARRRIDAILADVAPADG DD A+E Sbjct 61 LTAAGRGKLDHSYDDLASAAMRQLREIGGEDAVRTFARRRIDAILADVAPADGHDDDAVE 120 Query 168 AAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVL 227 AAAERIA AL+KAGYVATTTRVGGPIHGVQICQHHCPV+HVAEEFPELCE EQQAMAEVL Sbjct 121 AAAERIAGALTKAGYVATTTRVGGPIHGVQICQHHCPVAHVAEEFPELCEAEQQAMAEVL 180 Query 228 GTHVQRLATIVNGDCACTTHVPLSPAPSPRPPATSTEGAS 267 GTHVQRLATIVNGDCACTTHVPL+PAPSPR TS +GAS Sbjct 181 GTHVQRLATIVNGDCACTTHVPLTPAPSPRRDTTSIKGAS 220 >gi|342858750|ref|ZP_08715405.1| DNA-binding protein [Mycobacterium colombiense CECT 3035] gi|342134454|gb|EGT87634.1| DNA-binding protein [Mycobacterium colombiense CECT 3035] Length=254 Score = 394 bits (1011), Expect = 1e-107, Method: Compositional matrix adjust. Identities = 198/231 (86%), Positives = 210/231 (91%), Gaps = 0/231 (0%) Query 38 VSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQV 97 V DGHTRRAIVRLLLESGSITAGEIGDRLGL+AAGVRRHLDALIEAGDAE+ A A WQQ Sbjct 24 VPDGHTRRAIVRLLLESGSITAGEIGDRLGLAAAGVRRHLDALIEAGDAESVAPAAWQQA 83 Query 98 GRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAP 157 GRGRPAKRYRLTAAGRAKLDHSYDDLA+AAMRQLREIGGEEAV+ FAR+RIDAILADV Sbjct 84 GRGRPAKRYRLTAAGRAKLDHSYDDLAAAAMRQLREIGGEEAVQAFARQRIDAILADVPA 143 Query 158 ADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCE 217 AD D +EAAA+RIATAL+KAGYV TT +VGGPIHGVQICQHHCPVSHVAEEFPELC+ Sbjct 144 ADSAADPDVEAAADRIATALTKAGYVTTTAQVGGPIHGVQICQHHCPVSHVAEEFPELCD 203 Query 218 TEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSPRPPATSTEGASR 268 EQQAMAEVLGTHVQRLATIVNGDCACTTHVPL+ APSPR TS +GASR Sbjct 204 AEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLTQAPSPRHNTTSIKGASR 254 >gi|118617466|ref|YP_905798.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118569576|gb|ABL04327.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length=261 Score = 390 bits (1001), Expect = 1e-106, Method: Compositional matrix adjust. Identities = 216/260 (84%), Positives = 232/260 (90%), Gaps = 4/260 (1%) Query 12 LVDRSTEFCHTDVVKI-PAVSTTVPAAV---SDGHTRRAIVRLLLESGSITAGEIGDRLG 67 ++DR E HT VVKI P S AA+ SDGHTRRAIVRLLLESGSITAGEIGDRLG Sbjct 1 MLDRCPELRHTGVVKIQPEFSAAHSAALVAGSDGHTRRAIVRLLLESGSITAGEIGDRLG 60 Query 68 LSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAA 127 LSAAGVRRHLDALI+AGDAE++ AAPWQQVGRGRPAKRYRLT GRAKL+HSYDDLA+AA Sbjct 61 LSAAGVRRHLDALIDAGDAESAPAAPWQQVGRGRPAKRYRLTPGGRAKLEHSYDDLAAAA 120 Query 128 MRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTT 187 MRQLREIGG++AVRTFARRRIDAILA V A PDDAA+EAAAER+A+AL+KAGYVATTT Sbjct 121 MRQLREIGGDDAVRTFARRRIDAILAGVPAAASPDDAAVEAAAERVASALTKAGYVATTT 180 Query 188 RVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTH 247 RVGGPIHGVQICQHHCPVSHVAEEFPELCE EQQA+AEVLGTHVQRLATIVNGDCACTTH Sbjct 181 RVGGPIHGVQICQHHCPVSHVAEEFPELCEAEQQAIAEVLGTHVQRLATIVNGDCACTTH 240 Query 248 VPLSPAPSPRPPATSTEGAS 267 VPL+PAPSPR TST GAS Sbjct 241 VPLTPAPSPRQHLTSTGGAS 260 >gi|183982278|ref|YP_001850569.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183175604|gb|ACC40714.1| transcriptional regulatory protein [Mycobacterium marinum M] Length=261 Score = 387 bits (995), Expect = 7e-106, Method: Compositional matrix adjust. Identities = 215/260 (83%), Positives = 231/260 (89%), Gaps = 4/260 (1%) Query 12 LVDRSTEFCHTDVVKI-PAVSTTVPAAV---SDGHTRRAIVRLLLESGSITAGEIGDRLG 67 ++DR E HT VVKI P S AA+ SDGHTRRAIVRLLLESGSITAGEIGDRLG Sbjct 1 MLDRCPELRHTGVVKIQPEFSAAHSAALVAGSDGHTRRAIVRLLLESGSITAGEIGDRLG 60 Query 68 LSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAA 127 LSAAGVRRHLDALI+AGDAE++ AAPWQQ GRGRPAKRYRLT GRAKL+HSYDDLA+AA Sbjct 61 LSAAGVRRHLDALIDAGDAESAPAAPWQQAGRGRPAKRYRLTPGGRAKLEHSYDDLAAAA 120 Query 128 MRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTT 187 MRQLREIGG++AVRTFARRRIDAILA V A PDDAA+EAAAER+A+AL+KAGYVATTT Sbjct 121 MRQLREIGGDDAVRTFARRRIDAILAGVPAAASPDDAAVEAAAERVASALTKAGYVATTT 180 Query 188 RVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTH 247 RVGGPIHGVQICQHHCPVSHVAEEFPELCE EQQA+AEVLGTHVQRLATIVNGDCACTTH Sbjct 181 RVGGPIHGVQICQHHCPVSHVAEEFPELCEAEQQAIAEVLGTHVQRLATIVNGDCACTTH 240 Query 248 VPLSPAPSPRPPATSTEGAS 267 VPL+PAPSPR TST GAS Sbjct 241 VPLTPAPSPRQHLTSTGGAS 260 >gi|15827238|ref|NP_301501.1| DNA-binding protein [Mycobacterium leprae TN] gi|221229716|ref|YP_002503132.1| putative DNA-binding protein [Mycobacterium leprae Br4923] gi|466881|gb|AAA17126.1| B1496_C2_188 [Mycobacterium leprae] gi|2398708|emb|CAB16173.1| hypothetical protein MLCL536.29c [Mycobacterium leprae] gi|13092787|emb|CAC30100.1| putative DNA-binding protein [Mycobacterium leprae] gi|219932823|emb|CAR70685.1| putative DNA-binding protein [Mycobacterium leprae Br4923] Length=254 Score = 386 bits (992), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 200/246 (82%), Positives = 214/246 (87%), Gaps = 7/246 (2%) Query 13 VDRSTEFCHTDVVKIPA---VSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLS 69 +DRS E HT VVKI + +TTV AVSDGHTRRA+VRLLLESGSITAGEI DRLGLS Sbjct 11 LDRSPELRHTGVVKIRSELDAATTV--AVSDGHTRRAVVRLLLESGSITAGEISDRLGLS 68 Query 70 AAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMR 129 AAGVRRHLD LIE GDAE++ AAPWQQVGRGRPAK YRLTA GRAKL H+YD LASAAMR Sbjct 69 AAGVRRHLDVLIEMGDAESATAAPWQQVGRGRPAKHYRLTAVGRAKLGHAYDTLASAAMR 128 Query 130 QLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRV 189 QLREIGGE+AVRTFAR+RIDAILADV PA G D +EAAA R+A+ALS AGYVATT RV Sbjct 129 QLREIGGEDAVRTFARQRIDAILADVEPAGGGAD--VEAAANRVASALSDAGYVATTARV 186 Query 190 GGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVP 249 GGPIHGV+ICQHHCPVSHVAEEFPELCETEQQA+AEVLGTHVQRLA IVNGDCACTTHVP Sbjct 187 GGPIHGVEICQHHCPVSHVAEEFPELCETEQQAIAEVLGTHVQRLAMIVNGDCACTTHVP 246 Query 250 LSPAPS 255 L PS Sbjct 247 LMSVPS 252 >gi|41407284|ref|NP_960120.1| hypothetical protein MAP1186 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395636|gb|AAS03503.1| hypothetical protein MAP_1186 [Mycobacterium avium subsp. paratuberculosis K-10] Length=281 Score = 381 bits (978), Expect = 7e-104, Method: Compositional matrix adjust. Identities = 212/269 (79%), Positives = 226/269 (85%), Gaps = 8/269 (2%) Query 7 PHRASLVDRSTEFCHTDVVKI-----PAVSTTVPAAVSDGHTRRAIVRLLLESGSITAGE 61 P RA L+DRS E HT VVKI A AAV DGHTRRAIVRLLLESGSITAGE Sbjct 12 PPRAPLLDRSPELRHTGVVKIRTSLDDAAVGAAGAAVPDGHTRRAIVRLLLESGSITAGE 71 Query 62 IGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYD 121 IGDRLGL+AAGVRRHLDALIEAGDAE+ A A WQ GRGRPAKRYRLT+AGRAKLDH+YD Sbjct 72 IGDRLGLAAAGVRRHLDALIEAGDAESIAPAAWQHAGRGRPAKRYRLTSAGRAKLDHAYD 131 Query 122 DLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAG 181 DLA+AAMRQLREIGGEEAV+ FAR+RIDAILA V A D +EAAAERIATAL+KAG Sbjct 132 DLAAAAMRQLREIGGEEAVQAFARQRIDAILAGVPGAASAADDDIEAAAERIATALTKAG 191 Query 182 YVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGD 241 YVATTT+VGGPIHGVQICQHHCPVSHVAEEFPELC+ EQQAMAEVLGTHVQRLATIVNGD Sbjct 192 YVATTTQVGGPIHGVQICQHHCPVSHVAEEFPELCDAEQQAMAEVLGTHVQRLATIVNGD 251 Query 242 CACTTHVPL---SPAPSPRPPATSTEGAS 267 CACTTHVPL + APSPR TS +GAS Sbjct 252 CACTTHVPLAQTAKAPSPRRHTTSNKGAS 280 >gi|296170680|ref|ZP_06852255.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894669|gb|EFG74403.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=266 Score = 380 bits (977), Expect = 9e-104, Method: Compositional matrix adjust. Identities = 215/265 (82%), Positives = 227/265 (86%), Gaps = 9/265 (3%) Query 12 LVDRSTEFCHTDVVKIP-----AVSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRL 66 +VDRS E HT VVKI A AAV DGHTRRAIVRLL+ESG+ITAGEIGDRL Sbjct 1 MVDRSPELRHTGVVKIQTGFDDAAVGAAAAAVPDGHTRRAIVRLLVESGTITAGEIGDRL 60 Query 67 GLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASA 126 GL+AAGVRRHLDALIEAGDAE+ AA WQQ GRGRPAKR+RLTAAGRAKL+H+YDDLASA Sbjct 61 GLAAAGVRRHLDALIEAGDAESVPAAAWQQAGRGRPAKRFRLTAAGRAKLNHAYDDLASA 120 Query 127 AMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATT 186 AMRQLREIGGE+AVR FARRRIDAILA V AD DDA +EAAAER+A AL+KAGYVATT Sbjct 121 AMRQLREIGGEDAVRAFARRRIDAILAGVPAADSADDAEVEAAAERVAGALTKAGYVATT 180 Query 187 TRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTT 246 TRVGGPIHGVQICQHHCPVSHVAEEFPELCE EQQAMAEVLGTHVQRLATIVNGDCACTT Sbjct 181 TRVGGPIHGVQICQHHCPVSHVAEEFPELCEAEQQAMAEVLGTHVQRLATIVNGDCACTT 240 Query 247 HVPL----SPAPSPRPPATSTEGAS 267 HVPL S APSPRP TS EGAS Sbjct 241 HVPLTVPSSKAPSPRPHPTSIEGAS 265 >gi|254821670|ref|ZP_05226671.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950] Length=257 Score = 372 bits (956), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 200/243 (83%), Positives = 213/243 (88%), Gaps = 8/243 (3%) Query 34 VPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAP 93 V AA SD HTRRAIVRLLLESG+ITAGEIGDRLGL+AAGVRRHLDALIEAGDAEA+A A Sbjct 15 VGAASSDRHTRRAIVRLLLESGTITAGEIGDRLGLAAAGVRRHLDALIEAGDAEATAPAA 74 Query 94 WQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILA 153 WQQ GRGRPAKRYRLTA GRAKLDH+YDDLA+AAMRQLREIGGEEAV+ FAR+RIDAIL Sbjct 75 WQQAGRGRPAKRYRLTAGGRAKLDHAYDDLAAAAMRQLREIGGEEAVQAFARQRIDAILT 134 Query 154 DVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFP 213 +V AD D +EAAAERIATAL+KAGYVA+TT+VGGPIHGVQICQHHCPVSHVAEEFP Sbjct 135 EVTAADSAADDDVEAAAERIATALTKAGYVASTTQVGGPIHGVQICQHHCPVSHVAEEFP 194 Query 214 ELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPL------SPAPSPR--PPATSTEG 265 ELCE EQQAMAEVLGTHVQRLATIVNGDCACTTHVPL S APSPR TS +G Sbjct 195 ELCEAEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLTQSKASSTAPSPRHMTDTTSIKG 254 Query 266 ASR 268 ASR Sbjct 255 ASR 257 >gi|118466484|ref|YP_882501.1| DNA-binding protein [Mycobacterium avium 104] gi|254775764|ref|ZP_05217280.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118167771|gb|ABK68668.1| DNA-binding protein [Mycobacterium avium 104] Length=241 Score = 372 bits (954), Expect = 4e-101, Method: Compositional matrix adjust. Identities = 196/235 (84%), Positives = 210/235 (90%), Gaps = 3/235 (1%) Query 36 AAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQ 95 AAV DGHTRRAIVRLLLESGSITAGEIGDRLGL+AAGVRRHLDALIEAGDAE+ A A WQ Sbjct 6 AAVPDGHTRRAIVRLLLESGSITAGEIGDRLGLAAAGVRRHLDALIEAGDAESIAPAAWQ 65 Query 96 QVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADV 155 GRGRPAKRYRLT+AGRAKLDH+YDDLA+AAMRQLREIGGEEAV+ FAR+RIDAILA V Sbjct 66 HAGRGRPAKRYRLTSAGRAKLDHAYDDLAAAAMRQLREIGGEEAVQAFARQRIDAILAGV 125 Query 156 APADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPEL 215 A D +EAAA+RIATAL+KAGYVATTT+VGGPIHGVQICQHHCPVSHVAEEFPEL Sbjct 126 PGAASAADDDIEAAAQRIATALTKAGYVATTTQVGGPIHGVQICQHHCPVSHVAEEFPEL 185 Query 216 CETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPL---SPAPSPRPPATSTEGAS 267 C+ EQQAMAEVLGTHVQRLATIVNGDCACTTHVPL + APSPR TS +GAS Sbjct 186 CDAEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLAQTAKAPSPRRHTTSNKGAS 240 >gi|336458013|gb|EGO37000.1| putative transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=234 Score = 369 bits (948), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 194/231 (84%), Positives = 207/231 (90%), Gaps = 3/231 (1%) Query 40 DGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGR 99 DGHTRRAIVRLLLESGSITAGEIGDRLGL+AAGVRRHLDALIEAGDAE+ A A WQ GR Sbjct 3 DGHTRRAIVRLLLESGSITAGEIGDRLGLAAAGVRRHLDALIEAGDAESIAPAAWQHAGR 62 Query 100 GRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPAD 159 GRPAKRYRLT+AGRAKLDH+YDDLA+AAMRQLREIGGEEAV+ FAR+RIDAILA V A Sbjct 63 GRPAKRYRLTSAGRAKLDHAYDDLAAAAMRQLREIGGEEAVQAFARQRIDAILAGVPGAA 122 Query 160 GPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETE 219 D +EAAAERIATAL+KAGYVATTT+VGGPIHGVQICQHHCPVSHVAEEFPELC+ E Sbjct 123 SAADDDIEAAAERIATALTKAGYVATTTQVGGPIHGVQICQHHCPVSHVAEEFPELCDAE 182 Query 220 QQAMAEVLGTHVQRLATIVNGDCACTTHVPL---SPAPSPRPPATSTEGAS 267 QQAMAEVLGTHVQRLATIVNGDCACTTHVPL + APSPR TS +GAS Sbjct 183 QQAMAEVLGTHVQRLATIVNGDCACTTHVPLAQTAKAPSPRRHTTSNKGAS 233 >gi|169629834|ref|YP_001703483.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC 19977] gi|169241801|emb|CAM62829.1| Probable transcriptional regulatory protein [Mycobacterium abscessus] Length=245 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 164/223 (74%), Positives = 184/223 (83%), Gaps = 5/223 (2%) Query 35 PAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPW 94 PAA ++G TR A+VRLLLESG ITAGEIG+RLGLSAAGVRRHLDALI+AGDA A AA W Sbjct 23 PAASTEGQTRAAVVRLLLESGPITAGEIGERLGLSAAGVRRHLDALIDAGDAVAHPAAAW 82 Query 95 QQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILAD 154 Q GRGRPAKR++LTA GRAKL+H+YDDLASAAMRQLREIGG+EAVRTFARRRID IL D Sbjct 83 QHHGRGRPAKRFQLTADGRAKLNHAYDDLASAAMRQLREIGGDEAVRTFARRRIDTILGD 142 Query 155 VAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGP---IHGVQICQHHCPVSHVAEE 211 + DD L AA ++A AL++AGY A+T +VGG + GVQICQHHCPVSHVA E Sbjct 143 LTIGAPQDD--LPAAVGQVADALTRAGYAASTQKVGGSGGFLQGVQICQHHCPVSHVAAE 200 Query 212 FPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAP 254 FPELCE EQQA A VLGTHVQRLATI NGDCACTTHVP+ +P Sbjct 201 FPELCEAEQQAFAAVLGTHVQRLATIANGDCACTTHVPMQTSP 243 >gi|120403716|ref|YP_953545.1| putative transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956534|gb|ABM13539.1| transcriptional regulator [Mycobacterium vanbaalenii PYR-1] Length=220 Score = 318 bits (814), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 174/215 (81%), Positives = 190/215 (89%), Gaps = 2/215 (0%) Query 39 SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVG 98 +DGHTR AIVRLLLESG +TA IG+RLGLSAAGVRRHLDALIEAG+A+A+AAA WQQ G Sbjct 6 ADGHTRGAIVRLLLESGPVTASRIGERLGLSAAGVRRHLDALIEAGEAQANAAAAWQQEG 65 Query 99 RGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPA 158 RGRPAKRY+LT+AGRAKL+H+YDDLASAAMRQLREIGGEEAVRTFARRRID IL+ V Sbjct 66 RGRPAKRYQLTSAGRAKLEHTYDDLASAAMRQLREIGGEEAVRTFARRRIDTILSGVEHV 125 Query 159 DGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCET 218 DG + +EAAA +IA ALS AG+ TT RVGGP+ GVQICQHHCPVSHVAEEFPELCE Sbjct 126 DGGE--GVEAAAGQIAEALSAAGFATTTARVGGPVGGVQICQHHCPVSHVAEEFPELCEA 183 Query 219 EQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPA 253 EQQAMAEVLGTHVQRLATI NGD ACTTHVPLSPA Sbjct 184 EQQAMAEVLGTHVQRLATIANGDFACTTHVPLSPA 218 >gi|118470796|ref|YP_887436.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118172083|gb|ABK72979.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length=281 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 179/254 (71%), Positives = 199/254 (79%), Gaps = 20/254 (7%) Query 16 STEFCHTDVVKIPAVSTT-------VPAA--------VSDGHTRRAIVRLLLESGSITAG 60 S EF H VVK+ +T+ VPAA +DG TRRAI++LLLE G ITAG Sbjct 4 SDEFRHNGVVKLRGGATSPVATGPSVPAADEVPGVISTADGQTRRAIIKLLLE-GPITAG 62 Query 61 EIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSY 120 +IG+RLG+SAAGVRRHLDALIEAGDA+ASAAA WQ GRGRPAKRYRLTAAGRAKL HSY Sbjct 63 QIGERLGISAAGVRRHLDALIEAGDAQASAAAAWQHTGRGRPAKRYRLTAAGRAKLGHSY 122 Query 121 DDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERIATALSKA 180 DDLA AA+RQLREIGG++AVRTFARRRID IL+ V G D A AER+A A++KA Sbjct 123 DDLAVAAIRQLREIGGKDAVRTFARRRIDTILSGVTAGSG--DVA--QTAERVADAMTKA 178 Query 181 GYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNG 240 GY TT V GPI GVQICQHHCPVSHVAEEFPELCETE++A AE+LGTHVQRLATIVNG Sbjct 179 GYATTTAPVSGPIRGVQICQHHCPVSHVAEEFPELCETEREAFAEILGTHVQRLATIVNG 238 Query 241 DCACTTHVPLSPAP 254 DCACTTHVPL P Sbjct 239 DCACTTHVPLDLDP 252 >gi|145224262|ref|YP_001134940.1| putative transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145216748|gb|ABP46152.1| transcriptional regulator [Mycobacterium gilvum PYR-GCK] Length=245 Score = 315 bits (807), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 180/244 (74%), Positives = 199/244 (82%), Gaps = 15/244 (6%) Query 21 HTDVVKIPAVSTTVPAAV--------SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAG 72 HT VVK + S+ P + G TR AIVRLLLESG +TAG IG +LGLSAAG Sbjct 3 HTGVVKFRSQSSEAPTSAPLHPVDGDHHGDTRSAIVRLLLESGPVTAGHIGQQLGLSAAG 62 Query 73 VRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLR 132 VRRHLDALIEAGDA+A+AAA WQQ GRGRPAKRYRLTAAGRAKL+H+YDDLASAAMRQLR Sbjct 63 VRRHLDALIEAGDAQANAAAAWQQEGRGRPAKRYRLTAAGRAKLEHTYDDLASAAMRQLR 122 Query 133 EIGGEEAVRTFARRRIDAILADVAPADGPDDAA----LEAAAERIATALSKAGYVATTTR 188 EIGG++AVRTFARRRID ILA V P DDA+ +EAAA+RIA AL+ AGY TT R Sbjct 123 EIGGDDAVRTFARRRIDTILAGVEPV---DDASRGEEIEAAADRIADALTGAGYATTTPR 179 Query 189 VGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHV 248 V GP+ GVQICQHHCPVSHVAE+FPELCE EQQAM++VLGTHVQRLATIVNGDCACTTHV Sbjct 180 VRGPLSGVQICQHHCPVSHVAEQFPELCEAEQQAMSDVLGTHVQRLATIVNGDCACTTHV 239 Query 249 PLSP 252 PL P Sbjct 240 PLVP 243 >gi|126435055|ref|YP_001070746.1| transcriptional regulator [Mycobacterium sp. JLS] gi|126234855|gb|ABN98255.1| transcriptional regulator [Mycobacterium sp. JLS] Length=238 Score = 314 bits (805), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 167/222 (76%), Positives = 191/222 (87%), Gaps = 7/222 (3%) Query 36 AAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQ 95 A VSDGHTR AI+++LL+ G +TA IG+RLG+SAAGVRRHLDALIEAGDA+A+AAA WQ Sbjct 4 AHVSDGHTRSAIIQMLLQ-GPVTASAIGERLGISAAGVRRHLDALIEAGDAQATAAAAWQ 62 Query 96 QVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADV 155 GRGRPAKRYRLTAAGRAKL H+YDDLA+AAMRQLREIGG++AVRTFARRRID IL+ V Sbjct 63 HTGRGRPAKRYRLTAAGRAKLGHTYDDLAAAAMRQLREIGGDDAVRTFARRRIDTILSGV 122 Query 156 AP-ADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPE 214 A ADG +E+ A R+A AL++AGY TTTRV GPI GVQICQHHCPVSHVAEEFPE Sbjct 123 AQGADG-----VESTAGRVAEALTEAGYATTTTRVSGPIDGVQICQHHCPVSHVAEEFPE 177 Query 215 LCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSP 256 LCE E++A +E+LGTHVQRLATIVNGDCACTTHVPL P +P Sbjct 178 LCEAEREAFSEILGTHVQRLATIVNGDCACTTHVPLQPDTTP 219 >gi|108799402|ref|YP_639599.1| transcriptional regulator [Mycobacterium sp. MCS] gi|119868515|ref|YP_938467.1| transcriptional regulator [Mycobacterium sp. KMS] gi|108769821|gb|ABG08543.1| transcriptional regulator [Mycobacterium sp. MCS] gi|119694604|gb|ABL91677.1| transcriptional regulator [Mycobacterium sp. KMS] Length=238 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 166/222 (75%), Positives = 190/222 (86%), Gaps = 7/222 (3%) Query 36 AAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQ 95 A VSDGHTR AI+++LL+ G +TA IG+RLG+SAAGVRRHLDALIEAGDA+A+AAA WQ Sbjct 4 AHVSDGHTRSAIIQMLLQ-GPVTASAIGERLGISAAGVRRHLDALIEAGDAQATAAAAWQ 62 Query 96 QVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADV 155 GRGRPAKRYRLTAAGRAKL H+YDDLA+AAMRQLREIGG++AVRTF RRRID IL+ V Sbjct 63 HTGRGRPAKRYRLTAAGRAKLGHTYDDLAAAAMRQLREIGGDDAVRTFGRRRIDTILSGV 122 Query 156 AP-ADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPE 214 A ADG +E+ A R+A AL++AGY TTTRV GPI GVQICQHHCPVSHVAEEFPE Sbjct 123 AQGADG-----VESTAGRVAEALTEAGYATTTTRVSGPIDGVQICQHHCPVSHVAEEFPE 177 Query 215 LCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSP 256 LCE E++A +E+LGTHVQRLATIVNGDCACTTHVPL P +P Sbjct 178 LCEAEREAFSEILGTHVQRLATIVNGDCACTTHVPLQPDTTP 219 >gi|289757569|ref|ZP_06516947.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289713133|gb|EFD77145.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] Length=220 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 201/247 (82%), Positives = 204/247 (83%), Gaps = 30/247 (12%) Query 25 VKIPAVSTTVPAAVSDGHTRRAIVRLLLESGSITAGE---IGDRLGLSAAGVRRHLDALI 81 +KIPAVSTTVPAAVSDG TRRAIVRLLL S I AG+ IG+R AAGV R Sbjct 1 MKIPAVSTTVPAAVSDGLTRRAIVRLLL-SPWIWAGDAKSIGERF--VAAGVTR------ 51 Query 82 EAGDAEASAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVR 141 G RLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVR Sbjct 52 ------------------GVTPSPTRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVR 93 Query 142 TFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQH 201 TFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQH Sbjct 94 TFARRRIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQH 153 Query 202 HCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSPRPPAT 261 HCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSPRPPAT Sbjct 154 HCPVSHVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSPRPPAT 213 Query 262 STEGASR 268 STEGASR Sbjct 214 STEGASR 220 >gi|333990895|ref|YP_004523509.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333486863|gb|AEF36255.1| transcriptional regulatory protein [Mycobacterium sp. JDM601] Length=280 Score = 311 bits (796), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 163/233 (70%), Positives = 184/233 (79%), Gaps = 6/233 (2%) Query 39 SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVG 98 S+G TR+A+VRLL+ESGSITAG+IG RLGLSAAGVRRHLDALIE GDAEA A A WQQVG Sbjct 39 SEGRTRQAVVRLLMESGSITAGDIGARLGLSAAGVRRHLDALIELGDAEAHAPAAWQQVG 98 Query 99 RGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADV--- 155 RGRPAKRY+LT AGR KL H YDDLA AAMRQLREIGGE+AV FAR+RID IL++V Sbjct 99 RGRPAKRYQLTDAGRGKLGHRYDDLAVAAMRQLREIGGEDAVVAFARQRIDTILSEVAAV 158 Query 156 -APADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPE 214 A D D LEA AERIA AL++AGY A+T RV G + GVQI QHHCPV++VA+EFPE Sbjct 159 AAEGDSDTDGDLEATAERIAAALTEAGYAASTARVDGGVPGVQILQHHCPVANVAKEFPE 218 Query 215 LCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLS--PAPSPRPPATSTEG 265 LC E+QAMAEVLGTHVQRLATI +G CTTHVPL+ A S R T+ G Sbjct 219 LCRAERQAMAEVLGTHVQRLATIADGGYVCTTHVPLTIKSAKSGRAGKTTKAG 271 >gi|315444597|ref|YP_004077476.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|315262900|gb|ADT99641.1| transcriptional regulator [Mycobacterium sp. Spyr1] Length=221 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 173/216 (81%), Positives = 189/216 (88%), Gaps = 7/216 (3%) Query 41 GHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRG 100 G TR AIVRLLLESG +TAG IG +LGLSAAGVRRHLDALIEAGDA+A+AAA WQQ GRG Sbjct 7 GDTRSAIVRLLLESGPVTAGHIGQQLGLSAAGVRRHLDALIEAGDAQANAAAAWQQEGRG 66 Query 101 RPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADG 160 RPAKRYRLTAAGRAKL+H+YDDLASAAMRQLREIGG++AVRTFARRRID ILA V P Sbjct 67 RPAKRYRLTAAGRAKLEHTYDDLASAAMRQLREIGGDDAVRTFARRRIDTILAGVEPV-- 124 Query 161 PDDAA----LEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELC 216 DDA+ +EAAA+RIA AL+ AGY TT RV GP+ GVQICQHHCPVSHVAE+FPELC Sbjct 125 -DDASRGEEIEAAADRIADALTGAGYATTTPRVRGPLSGVQICQHHCPVSHVAEQFPELC 183 Query 217 ETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSP 252 E EQQAM++VLGTHVQRLATIVNGDCACTTHVPL P Sbjct 184 EAEQQAMSDVLGTHVQRLATIVNGDCACTTHVPLVP 219 >gi|226366392|ref|YP_002784175.1| SufR family transcriptional regulator [Rhodococcus opacus B4] gi|226244882|dbj|BAH55230.1| putative SufR family transcriptional regulator [Rhodococcus opacus B4] Length=249 Score = 288 bits (736), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 146/229 (64%), Positives = 174/229 (76%), Gaps = 4/229 (1%) Query 30 VSTTVPAAVS-DGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEA 88 V+T P AV +GHTR A+V+LLLE G ITA EIG RLGLSAAGVRRHLDAL+E+G+A Sbjct 24 VATASPVAVGHEGHTRAAVVKLLLEEGPITASEIGTRLGLSAAGVRRHLDALLESGEARE 83 Query 89 SAAAPWQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRI 148 +++ + GRGRPAK +++TA GR +L H+YDDLA AAMRQLRE+GG+ A+ FARRR+ Sbjct 84 ASSVAVRHRGRGRPAKYFQITAKGRGRLGHAYDDLAGAAMRQLREVGGDAAITEFARRRV 143 Query 149 DAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHV 208 AI+ DV PA LE A+ IA A + AG+ A+T VG +GVQICQHHCPVSHV Sbjct 144 QAIVGDVTPAADQSAEGLETTADAIADAFTTAGFAASTRPVG---NGVQICQHHCPVSHV 200 Query 209 AEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSPR 257 AEEFPELCE EQ A A++LGTHVQRLATI NGDCACTTHVPL P PR Sbjct 201 AEEFPELCEAEQAAFAQLLGTHVQRLATIANGDCACTTHVPLVPPSGPR 249 >gi|111024145|ref|YP_707117.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110823675|gb|ABG98959.1| probable transcriptional regulator [Rhodococcus jostii RHA1] Length=261 Score = 288 bits (736), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 151/264 (58%), Positives = 184/264 (70%), Gaps = 22/264 (8%) Query 13 VDRSTEFCHTDVVKIPA------------------VSTTVPAAVS-DGHTRRAIVRLLLE 53 +D +EF HT VVK V T P AV +GHTR A+V+LLLE Sbjct 1 MDLRSEFRHTGVVKTETTPRATTESAVHAPSSAAPVGTASPVAVGHEGHTRAAVVKLLLE 60 Query 54 SGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRPAKRYRLTAAGR 113 G ITA EIG RLGLSAAGVRRHLDAL+++G+A +++ + GRGRPAK +++TA GR Sbjct 61 EGPITASEIGTRLGLSAAGVRRHLDALLDSGEAREASSVAVRHRGRGRPAKYFQITAKGR 120 Query 114 AKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDAALEAAAERI 173 +L H+YDDLA AAMRQLRE+GG+ A+ FARRR+ AI+ +V PA LE A+ I Sbjct 121 GRLGHAYDDLAGAAMRQLREVGGDAAITDFARRRVQAIVGNVTPAADQSAEGLETTADAI 180 Query 174 ATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMAEVLGTHVQR 233 A A + AG+ A+T VG +GVQICQHHCPVSHVAEEFPELCE EQ+A A++LGTHVQR Sbjct 181 ADAFTTAGFAASTRPVG---NGVQICQHHCPVSHVAEEFPELCEAEQEAFAQLLGTHVQR 237 Query 234 LATIVNGDCACTTHVPLSPAPSPR 257 LATI NGDCACTTHVPL P P+ Sbjct 238 LATIANGDCACTTHVPLVPPSGPK 261 >gi|325676698|ref|ZP_08156372.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325552480|gb|EGD22168.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length=232 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 140/212 (67%), Positives = 172/212 (82%), Gaps = 3/212 (1%) Query 40 DGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGR 99 +GHTR A+V+LL+E G I+A +IG RLGLSAAGVRRHLD LIEAG+A+ ++AA W+Q GR Sbjct 18 EGHTRAAVVQLLVEEGPISATDIGARLGLSAAGVRRHLDVLIEAGEAQEASAASWRQRGR 77 Query 100 GRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPAD 159 GRPAK +++TAAGR KL H+YDDLA AAMRQLREIGG+ A+ FARRR+ +I+ VAP D Sbjct 78 GRPAKLFQITAAGRGKLGHTYDDLAGAAMRQLREIGGDAAIEDFARRRVQSIVGSVAPVD 137 Query 160 GPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETE 219 + A+E+ AE IA A + AG+ A+ VG +GVQICQHHCP+SHVAEEFPELCE E Sbjct 138 DDEPEAVESTAEEIAEAFTSAGFAASIRPVG---NGVQICQHHCPISHVAEEFPELCEAE 194 Query 220 QQAMAEVLGTHVQRLATIVNGDCACTTHVPLS 251 + A AE+LGTHVQ+LATI NGDCACTTHVPL+ Sbjct 195 RAAFAELLGTHVQQLATIANGDCACTTHVPLA 226 >gi|229493521|ref|ZP_04387306.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|229319482|gb|EEN85318.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length=219 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 142/211 (68%), Positives = 169/211 (81%), Gaps = 3/211 (1%) Query 40 DGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGR 99 +G TR A+V+LLLE G ITA EIG RLGLSAAGVRRHLDALIE+G+A ++AA +Q GR Sbjct 6 EGQTRAAVVKLLLEEGPITASEIGTRLGLSAAGVRRHLDALIESGEARTASAASLRQRGR 65 Query 100 GRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPAD 159 GRPAK++++TA GR +L H+YDDLA AAMRQLREIGG+ A+ FA+RR+ AI+ DV PAD Sbjct 66 GRPAKQFQITATGRGRLGHTYDDLAGAAMRQLREIGGDAAIEEFAKRRVQAIVGDVEPAD 125 Query 160 GPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETE 219 D +EA A+ IA A + G+ A+T VG +GVQICQHHCPVSHVAEEFPELCE E Sbjct 126 PTDVDNVEATADAIAEAFNAVGFAASTRPVG---NGVQICQHHCPVSHVAEEFPELCEAE 182 Query 220 QQAMAEVLGTHVQRLATIVNGDCACTTHVPL 250 QQA ++LGTHVQRLATI NGDCACTTHVPL Sbjct 183 QQAFRQLLGTHVQRLATIANGDCACTTHVPL 213 >gi|312139626|ref|YP_004006962.1| arsr family transcriptional regulator [Rhodococcus equi 103S] gi|311888965|emb|CBH48278.1| putative ArsR family transcriptional regulator [Rhodococcus equi 103S] Length=220 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 140/212 (67%), Positives = 172/212 (82%), Gaps = 3/212 (1%) Query 40 DGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGR 99 +GHTR A+V+LL+E G I+A +IG RLGLSAAGVRRHLD LIEAG+A+ ++AA W+Q GR Sbjct 6 EGHTRAAVVQLLVEEGPISATDIGARLGLSAAGVRRHLDVLIEAGEAQEASAASWRQRGR 65 Query 100 GRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPAD 159 GRPAK +++TAAGR KL H+YDDLA AAMRQLREIGG+ A+ FARRR+ +I+ VAP D Sbjct 66 GRPAKLFQITAAGRGKLGHTYDDLAGAAMRQLREIGGDAAIEDFARRRVQSIVGSVAPVD 125 Query 160 GPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETE 219 + A+E+ AE IA A + AG+ A+ VG +GVQICQHHCP+SHVAEEFPELCE E Sbjct 126 DDEPEAVESTAEEIAEAFTSAGFAASIRPVG---NGVQICQHHCPISHVAEEFPELCEAE 182 Query 220 QQAMAEVLGTHVQRLATIVNGDCACTTHVPLS 251 + A AE+LGTHVQ+LATI NGDCACTTHVPL+ Sbjct 183 RAAFAELLGTHVQQLATIANGDCACTTHVPLA 214 >gi|226306541|ref|YP_002766501.1| hypothetical protein RER_30540 [Rhodococcus erythropolis PR4] gi|226185658|dbj|BAH33762.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=217 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 141/211 (67%), Positives = 169/211 (81%), Gaps = 3/211 (1%) Query 40 DGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGR 99 +G TR A+V+LLLE G ITA EIG RLGLSAAGVRRHLDALIE+G+A ++A+ +Q GR Sbjct 4 EGQTRAAVVKLLLEEGPITASEIGTRLGLSAAGVRRHLDALIESGEARTASASSLRQRGR 63 Query 100 GRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPAD 159 GRPAK++++TA GR +L H+YDDLA AAMRQLREIGG+ A+ FA+RR+ AI+ DV PAD Sbjct 64 GRPAKQFQITATGRGRLGHTYDDLAGAAMRQLREIGGDAAIEEFAKRRVQAIVGDVEPAD 123 Query 160 GPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETE 219 D +EA A+ IA A + G+ A+T VG +GVQICQHHCPVSHVAEEFPELCE E Sbjct 124 PTDVDNVEATADAIAEAFNAVGFAASTRPVG---NGVQICQHHCPVSHVAEEFPELCEAE 180 Query 220 QQAMAEVLGTHVQRLATIVNGDCACTTHVPL 250 QQA ++LGTHVQRLATI NGDCACTTHVPL Sbjct 181 QQAFRQLLGTHVQRLATIANGDCACTTHVPL 211 >gi|54025531|ref|YP_119773.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54017039|dbj|BAD58409.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length=278 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 137/213 (65%), Positives = 165/213 (78%), Gaps = 3/213 (1%) Query 40 DGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGR 99 +GHTR AIV+LLLE G ITA IG++LGL+ AGVRRHLDALIE+G A A +APWQQ GR Sbjct 28 EGHTRAAIVQLLLEEGPITATAIGNKLGLAPAGVRRHLDALIESGQARAGRSAPWQQKGR 87 Query 100 GRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPAD 159 GRPAK+Y+LTAAGR +L H+YDDLA AA+RQL EIGG +A+ FAR+R I+A + P Sbjct 88 GRPAKQYQLTAAGRGQLGHAYDDLAGAAIRQLGEIGGPQAITEFARKRARTIVAGIEPVR 147 Query 160 GPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETE 219 EA AE +A A + +G+ ATT +VG GVQICQHHCPV+HVAEEFP+LCE E Sbjct 148 EHTPERTEAKAEELAAAFTDSGFAATTRKVGA---GVQICQHHCPVAHVAEEFPQLCEAE 204 Query 220 QQAMAEVLGTHVQRLATIVNGDCACTTHVPLSP 252 +A+ ++LGTHVQRLATI NGDCACTTHVPL P Sbjct 205 LEAVRDLLGTHVQRLATIANGDCACTTHVPLLP 237 >gi|262202309|ref|YP_003273517.1| ArsR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085656|gb|ACY21624.1| regulatory protein ArsR [Gordonia bronchialis DSM 43247] Length=274 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 131/215 (61%), Positives = 157/215 (74%), Gaps = 6/215 (2%) Query 40 DGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGR 99 DG TR A+V LL+E G +TAGEIG+RLG+SAAGVRRHLDAL+ GD E S++ + Q GR Sbjct 32 DGQTRAAVVTLLVEDGPLTAGEIGERLGISAAGVRRHLDALLAVGDVEVSSSG-FGQRGR 90 Query 100 GRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPAD 159 GRPAK ++LTA GR KL H+YDDLA AAMR+LR + G++AV FAR R++ I+A V PA Sbjct 91 GRPAKWFQLTATGRGKLRHAYDDLAGAAMRKLRAVAGDDAVEEFARERVERIVAGV-PAS 149 Query 160 GPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETE 219 G + + E IA AL+ AGY T VG G+QICQHHCPV+HVA EFP+LCE E Sbjct 150 GGSTSVADTV-EAIADALTSAGYATNTREVG---TGMQICQHHCPVAHVATEFPQLCEAE 205 Query 220 QQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAP 254 E+LGTHVQRLATI NGDCACTTHVPL P Sbjct 206 TAVFTELLGTHVQRLATIANGDCACTTHVPLQSVP 240 >gi|343924599|ref|ZP_08764147.1| putative SufR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343765534|dbj|GAA11073.1| putative SufR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=228 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 122/204 (60%), Positives = 150/204 (74%), Gaps = 7/204 (3%) Query 47 IVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAE--ASAAAPWQQVGRGRPAK 104 +V LL+E G +TA EIG+RLG+SAAGVRRHLDAL AGD E ++ + GRGRPAK Sbjct 1 MVNLLVEDGPLTASEIGERLGISAAGVRRHLDALTSAGDIEVASTGFGQRRGRGRGRPAK 60 Query 105 RYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPDDA 164 ++LTA GR K+ H+YDDLA AAMR+LR++GG +AV FAR R++ I+ADV+P+ P Sbjct 61 WFQLTAEGRGKMRHAYDDLAGAAMRKLRDLGGHDAVAEFARERVERIVADVSPSADP--V 118 Query 165 ALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQAMA 224 + E IA AL+ AGY T +VG +G+QICQHHCPV+HVA EFPELCE E Sbjct 119 TVSDTVEEIADALTSAGYATNTRQVG---NGIQICQHHCPVAHVATEFPELCEAETAVFT 175 Query 225 EVLGTHVQRLATIVNGDCACTTHV 248 E+LGTHVQRLATI NGDCACTTHV Sbjct 176 ELLGTHVQRLATIANGDCACTTHV 199 >gi|296117935|ref|ZP_06836518.1| putative DNA-binding transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] gi|295969166|gb|EFG82408.1| putative DNA-binding transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] Length=238 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/218 (52%), Positives = 150/218 (69%), Gaps = 8/218 (3%) Query 39 SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPW---- 94 ++G TRR ++ LLL+ G ITA +G +LGLSAAGVRRHLD L+E G E P Sbjct 14 TEGDTRRQVMLLLLKEGPITASNLGTQLGLSAAGVRRHLDILVEDGLTEVVNRRPQPKNG 73 Query 95 QQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILAD 154 Q GRGRPAK +RLT GR++ H+YD+LAS A+ LRE+GG EAV+ FA R++ +LAD Sbjct 74 QSAGRGRPAKHFRLTDKGRSQFGHTYDELASEALDTLREVGGSEAVKKFAILRMERLLAD 133 Query 155 VAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPE 214 + P G +++ ++ A ++A AL GY AT G HGVQ+CQHHCPV+ VAE+ PE Sbjct 134 IEPLVGENESVVDTA-RKLAAALDDNGYAATIHEAG---HGVQVCQHHCPVARVAEQHPE 189 Query 215 LCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSP 252 LCE EQ+ + +LGTHVQ LA+I +G CTT++PL+P Sbjct 190 LCEAEQEVFSALLGTHVQPLASIADGHGICTTNIPLTP 227 >gi|227833039|ref|YP_002834746.1| ArsR transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182473|ref|ZP_06041894.1| ArsR transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] gi|227454055|gb|ACP32808.1| ArsR transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] Length=236 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 115/220 (53%), Positives = 149/220 (68%), Gaps = 8/220 (3%) Query 39 SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEA----SAAAPW 94 ++G TRR ++ LLL+ G +TA +G+RLGLSAAG+RRHLD L+E G E +A P Sbjct 12 TEGDTRRHVMLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHRRPSARPG 71 Query 95 QQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILAD 154 Q GRGRPAK +RLT GRA+ H+YD LA+ A+ LRE GG EAVR FA+ R + ++ D Sbjct 72 QTAGRGRPAKHFRLTDQGRAQFGHAYDQLAAEALTALREAGGPEAVRHFAKARFERLVED 131 Query 155 VAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPE 214 V P D+ ++ A R+A L GY AT T VG +GVQICQHHCPV+HVA E PE Sbjct 132 VTPLV-EDEESVPEVARRLAEVLDAHGYAATVTSVG---NGVQICQHHCPVAHVAAEHPE 187 Query 215 LCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAP 254 LCE EQ+ + +LG HVQ LA+I +G CTT++PL+P P Sbjct 188 LCEAEQEVFSALLGKHVQPLASIADGHGICTTNIPLTPVP 227 >gi|38233881|ref|NP_939648.1| putative DNA-binding protein [Corynebacterium diphtheriae NCTC 13129] gi|38200142|emb|CAE49823.1| Putative DNA-binding protein [Corynebacterium diphtheriae] Length=238 Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 108/220 (50%), Positives = 150/220 (69%), Gaps = 4/220 (1%) Query 39 SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQ-QV 97 +DG TRR I+ ++L+ G +TA ++G +L LSA G+RRHLD L++ G AE S+ + Sbjct 12 TDGETRRHIMLIMLKEGPVTATQLGQQLNLSATGIRRHLDILLDEGFAEISSVRRVACEK 71 Query 98 GRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAP 157 RGRPAK ++LTA+GR++ H YD LA+ A+ L+E GGE AVR FAR+R++ ILADV Sbjct 72 SRGRPAKAFKLTASGRSQFGHEYDSLAAEALATLKESGGEAAVRAFARKRVEKILADVHV 131 Query 158 ADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCE 217 D DD L A ++ A S GY AT + +GVQICQHHCP+S VA +FPELCE Sbjct 132 PDNIDDNQLAEVATQLVEAFSNNGYAAT---INNAANGVQICQHHCPISGVAADFPELCE 188 Query 218 TEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSPR 257 E + +A++LG HVQ LA+I +G CTT++P++P +PR Sbjct 189 AEHEMIAKILGHHVQPLASIADGHDICTTNIPITPILTPR 228 >gi|319947901|ref|ZP_08022086.1| hypothetical protein ES5_01186 [Dietzia cinnamea P4] gi|319438444|gb|EFV93379.1| hypothetical protein ES5_01186 [Dietzia cinnamea P4] Length=245 Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 115/207 (56%), Positives = 145/207 (71%), Gaps = 7/207 (3%) Query 43 TRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVGRGRP 102 TR I LLLE G++TA EIG LGL+AAGVRRHLD L+EAG+ EA+ P RGRP Sbjct 15 TRSTIRELLLERGALTAAEIGQELGLTAAGVRRHLDHLVEAGEVEAARTRPAGT--RGRP 72 Query 103 AKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPADGPD 162 A+ +++TA GR+ H YD LA A+ LR IGG EAV FAR R+ +++ V PA+G Sbjct 73 ARAFQVTATGRSTARHGYDHLAVEALTALRRIGGAEAVSEFARERVRSVIGHVRPAEGAH 132 Query 163 DAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCETEQQA 222 D +E AA IA ALSKAGY ++ G G+QICQHHCPV +VA FPELCE EQ+ Sbjct 133 D--VERAATDIAVALSKAGYASSVEDAGT---GLQICQHHCPVWNVASRFPELCEAEQEV 187 Query 223 MAEVLGTHVQRLATIVNGDCACTTHVP 249 ++E++GTHVQRLATI G+CACTT++P Sbjct 188 VSEIVGTHVQRLATIAGGNCACTTNIP 214 >gi|213965607|ref|ZP_03393801.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213951766|gb|EEB63154.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length=232 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 118/215 (55%), Positives = 147/215 (69%), Gaps = 5/215 (2%) Query 38 VSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQV 97 V+DG TR+ I++LLLE +A I D LGLSAAGVRRH+D L++ G AE + A Sbjct 8 VNDGDTRKRILQLLLEHNPASATFIADTLGLSAAGVRRHIDILVDEGLAETAPAPSTGPR 67 Query 98 GRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAP 157 GRGRPAK YRLT GRA+ H+YDDLASAA+ LR+ GGE+AV FAR+RID IL V P Sbjct 68 GRGRPAKSYRLTDRGRARFGHAYDDLASAALTALRKAGGEQAVAQFARQRIDDILLGVTP 127 Query 158 ADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCE 217 DA E E + A +AGY AT + G GVQICQHHCP+SHVA EFPELC Sbjct 128 VG--QDAEKEEVVEAVVDAFRRAGYAATINQNTG---GVQICQHHCPISHVASEFPELCA 182 Query 218 TEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSP 252 E +A++++LG H Q LATI +G+ CTT++PL+P Sbjct 183 AEHEAVSKLLGQHTQPLATIADGNGICTTNIPLTP 217 >gi|25028243|ref|NP_738297.1| hypothetical protein CE1687 [Corynebacterium efficiens YS-314] gi|23493527|dbj|BAC18497.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length=238 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 115/219 (53%), Positives = 148/219 (68%), Gaps = 6/219 (2%) Query 36 AAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASA--AAP 93 A+ +DG TRR I+ +LLE +TA EI D+L LS AGVRRHLD L+E EA+ P Sbjct 13 ASGADGDTRRNIMLILLERAPVTASEIADQLQLSTAGVRRHLDNLVEDELIEATKPRQNP 72 Query 94 WQQVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILA 153 ++ RGRPAK YRLT+ GRA H YD LA++A+ LRE GG+EAVR FARRRI I+ Sbjct 73 YEPKTRGRPAKSYRLTSQGRAIFGHEYDTLAASALATLREFGGDEAVREFARRRIATIVE 132 Query 154 DVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFP 213 V PA+ + ++ A+ + A S+ GY AT GG G+QICQHHCP+S+VA EFP Sbjct 133 GVTPAE-VSEQSIRDTAKSLVDAFSRHGYAATVDAAGG---GLQICQHHCPISNVATEFP 188 Query 214 ELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSP 252 ELCE E A++E+LG H Q LATI +G CTT++PL+P Sbjct 189 ELCEAEHHAVSELLGLHTQPLATIADGHGICTTNIPLTP 227 >gi|326382206|ref|ZP_08203898.1| regulatory protein ArsR [Gordonia neofelifaecis NRRL B-59395] gi|326198936|gb|EGD56118.1| regulatory protein ArsR [Gordonia neofelifaecis NRRL B-59395] Length=250 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 118/215 (55%), Positives = 150/215 (70%), Gaps = 9/215 (4%) Query 40 DGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEAS----AAAPWQ 95 DG TR A+V LL++ G +TAG+I +RLG+S AGVRRHL+ L GD E + + A Sbjct 19 DGQTRAAVVSLLVDEGPMTAGDIAERLGISPAGVRRHLENLSADGDIEVAPSGFSKAGSG 78 Query 96 QVGRGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADV 155 + GRGRPAK ++LT AGR KL H+YDDLA A +R+LR++ G++AV FA RI ++A+V Sbjct 79 RGGRGRPAKWFQLTPAGRGKLRHAYDDLAGAVLRKLRDVAGQQAVDEFAHDRIAGLVAEV 138 Query 156 APADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPEL 215 P + ++ A ++IA AL+ GY A T VG GVQICQHHCPV+HVA EFPEL Sbjct 139 EPVE--SSGSVIATVQQIADALTAGGYSADTREVGA---GVQICQHHCPVAHVASEFPEL 193 Query 216 CETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPL 250 CE E E+LGTHVQRLATI NGDC CTTHVP+ Sbjct 194 CEAETAMFTELLGTHVQRLATIANGDCVCTTHVPV 228 >gi|300858512|ref|YP_003783495.1| ArsR family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685966|gb|ADK28888.1| ArsR-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302206224|gb|ADL10566.1| Iron-sulfur cluster biosynthesis transcriptional regulator SufR [Corynebacterium pseudotuberculosis C231] gi|302330782|gb|ADL20976.1| Iron-sulfur cluster biosynthesis transcriptional regulator SufR [Corynebacterium pseudotuberculosis 1002] Length=257 Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 113/230 (50%), Positives = 152/230 (67%), Gaps = 8/230 (3%) Query 30 VSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEAS 89 V + V +DG TRR I+ ++L+SG +TA ++G+ LGLSA G+RRH+D L+E G AE S Sbjct 22 VRSVVETRSTDGETRRQIMLVMLKSGPVTATQLGEALGLSATGIRRHVDILVEEGLAEVS 81 Query 90 AAAPWQQVG---RGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARR 146 P + G RGRPAK +RLTAAGR + H YD LA+ A+ LRE GGE AV+ FAR+ Sbjct 82 Q--PRKVTGDKTRGRPAKSFRLTAAGRGQFGHDYDSLAAQALATLRETGGEAAVKEFARK 139 Query 147 RIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVS 206 R+ AI+ + D +LE A + A S++GY AT T +GVQICQHHCP++ Sbjct 140 RVAAIVEGIEIPATEDANSLEKTASALVKAFSESGYAATLTNAA---NGVQICQHHCPIA 196 Query 207 HVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSP 256 VA EFPELCE E +A+A +LG HVQ LA+I G CTT++P++P +P Sbjct 197 GVAAEFPELCEAEHEAIAMLLGHHVQPLASIAEGHDICTTNIPITPILTP 246 >gi|308276466|gb|ADO26365.1| Iron-sulfur cluster biosynthesis transcriptional regulator SufR [Corynebacterium pseudotuberculosis I19] gi|341824906|gb|AEK92427.1| Iron-sulfur cluster biosynthesis transcriptional regulator SufR [Corynebacterium pseudotuberculosis PAT10] Length=282 Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 113/230 (50%), Positives = 152/230 (67%), Gaps = 8/230 (3%) Query 30 VSTTVPAAVSDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEAS 89 V + V +DG TRR I+ ++L+SG +TA ++G+ LGLSA G+RRH+D L+E G AE S Sbjct 47 VRSVVETRSTDGETRRQIMLVMLKSGPVTATQLGEALGLSATGIRRHVDILVEEGLAEVS 106 Query 90 AAAPWQQVG---RGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARR 146 P + G RGRPAK +RLTAAGR + H YD LA+ A+ LRE GGE AV+ FAR+ Sbjct 107 Q--PRKVTGDKTRGRPAKSFRLTAAGRGQFGHDYDSLAAQALATLRETGGEAAVKEFARK 164 Query 147 RIDAILADVAPADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVS 206 R+ AI+ + D +LE A + A S++GY AT T +GVQICQHHCP++ Sbjct 165 RVAAIVEGIEIPATEDANSLEKTASALVKAFSESGYAATLTNAA---NGVQICQHHCPIA 221 Query 207 HVAEEFPELCETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSP 256 VA EFPELCE E +A+A +LG HVQ LA+I G CTT++P++P +P Sbjct 222 GVAAEFPELCEAEHEAIAMLLGHHVQPLASIAEGHDICTTNIPITPILTP 271 >gi|227504376|ref|ZP_03934425.1| possible transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227199024|gb|EEI79072.1| possible transcriptional regulator [Corynebacterium striatum ATCC 6940] Length=227 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 112/219 (52%), Positives = 147/219 (68%), Gaps = 5/219 (2%) Query 39 SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVG 98 ++G TRR ++ LLL+ G +TA +G+RLGLSAAG+RRHLD L+E E P G Sbjct 10 TEGDTRRQVMLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEELTEVVHRRP-HSAG 68 Query 99 RGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPA 158 RGRPAK +RLT GRA+ H+YD LAS A+ LR GG EAVR+FA+ R + +LADV P Sbjct 69 RGRPAKHFRLTDRGRAQFGHAYDALASDALDALRAAGGAEAVRSFAKARFEKLLADVKPL 128 Query 159 DGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCET 218 DD +++ A+++A L + GY AT G +GVQICQHHCPV+HVA E PELCE Sbjct 129 -VRDDESVKEVAKKLAEVLDEHGYAATVNSAG---NGVQICQHHCPVAHVAAEHPELCEA 184 Query 219 EQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSPR 257 EQ+ + +LG HVQ LA+I +G CTT++PL+P R Sbjct 185 EQEVFSALLGKHVQPLASIADGHGICTTNIPLTPVSPDR 223 >gi|334696930|gb|AEG81727.1| ArsR-family transcription regulator [Corynebacterium ulcerans 809] Length=251 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/221 (51%), Positives = 149/221 (68%), Gaps = 8/221 (3%) Query 39 SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVG 98 +DG TRR I+ ++L+SG +TA ++G+ LGLSA G+RRH+D L+E G AE S P + G Sbjct 25 TDGETRRQIMLVMLKSGPVTATQLGETLGLSATGIRRHVDILVEEGLAEISQ--PRKTAG 82 Query 99 ---RGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADV 155 RGRPAK +RLTAAGR + H YD LA+ A+ L+E GGE AV+ FAR+R+ I+ V Sbjct 83 DKTRGRPAKSFRLTAAGRGQFGHDYDSLAAQALATLKETGGETAVKEFARKRVATIIEGV 142 Query 156 APADGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPEL 215 D +LE AA + A S++GY AT T +GVQICQHHCP++ VA EFPEL Sbjct 143 EIPTVEDADSLEKAAFALVEAFSESGYAATLTNAA---NGVQICQHHCPIAGVAAEFPEL 199 Query 216 CETEQQAMAEVLGTHVQRLATIVNGDCACTTHVPLSPAPSP 256 CE E +A+A +LG HVQ LA+I G CTT++P++P +P Sbjct 200 CEAEHEAIAMLLGHHVQPLASIAEGHDICTTNIPITPILTP 240 Lambda K H 0.317 0.130 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 410477079682 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40