BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1476
Length=186
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608614|ref|NP_215992.1| hypothetical protein Rv1476 [Mycoba... 374 3e-102
gi|240172220|ref|ZP_04750879.1| hypothetical protein MkanA1_2309... 306 9e-82
gi|183982296|ref|YP_001850587.1| hypothetical protein MMAR_2283 ... 281 2e-74
gi|15827971|ref|NP_302234.1| hypothetical protein ML1813 [Mycoba... 280 6e-74
gi|118617146|ref|YP_905478.1| hypothetical protein MUL_1485 [Myc... 276 1e-72
gi|254819546|ref|ZP_05224547.1| hypothetical protein MintA_06454... 270 8e-71
gi|342858767|ref|ZP_08715422.1| hypothetical protein MCOL_07816 ... 261 3e-68
gi|41407300|ref|NP_960136.1| hypothetical protein MAP1202 [Mycob... 259 1e-67
gi|254775747|ref|ZP_05217263.1| hypothetical protein MaviaA2_139... 258 2e-67
gi|118462963|ref|YP_882484.1| hypothetical protein MAV_3302 [Myc... 258 2e-67
gi|296170663|ref|ZP_06852238.1| conserved hypothetical protein [... 235 2e-60
gi|126435071|ref|YP_001070762.1| hypothetical protein Mjls_2487 ... 196 1e-48
gi|119868530|ref|YP_938482.1| hypothetical protein Mkms_2495 [My... 196 1e-48
gi|333990878|ref|YP_004523492.1| hypothetical protein JDM601_223... 176 1e-42
gi|108799417|ref|YP_639614.1| hypothetical protein Mmcs_2450 [My... 176 2e-42
gi|145224248|ref|YP_001134926.1| hypothetical protein Mflv_3664 ... 169 1e-40
gi|315444584|ref|YP_004077463.1| hypothetical protein Mspyr1_301... 167 6e-40
gi|118473730|ref|YP_887459.1| hypothetical protein MSMEG_3144 [M... 162 2e-38
gi|120403730|ref|YP_953559.1| hypothetical protein Mvan_2746 [My... 158 4e-37
gi|169629813|ref|YP_001703462.1| hypothetical protein MAB_2729c ... 151 4e-35
gi|111024158|ref|YP_707130.1| hypothetical protein RHA1_ro07208 ... 115 2e-24
gi|226366405|ref|YP_002784188.1| hypothetical protein ROP_69960 ... 114 9e-24
gi|312139642|ref|YP_004006978.1| membrane protein [Rhodococcus e... 102 3e-20
gi|54025452|ref|YP_119694.1| hypothetical protein nfa34820 [Noca... 102 3e-20
gi|226306556|ref|YP_002766516.1| hypothetical protein RER_30690 ... 94.4 8e-18
gi|326382233|ref|ZP_08203925.1| hypothetical protein SCNU_04786 ... 91.7 4e-17
gi|229493439|ref|ZP_04387224.1| putative membrane protein [Rhodo... 87.0 1e-15
gi|319951197|ref|ZP_08025038.1| hypothetical protein ES5_16179 [... 85.9 3e-15
gi|317508710|ref|ZP_07966365.1| hypothetical protein HMPREF9336_... 84.3 6e-15
gi|296139784|ref|YP_003647027.1| hypothetical protein Tpau_2076 ... 79.0 3e-13
gi|296393884|ref|YP_003658768.1| hypothetical protein Srot_1474 ... 78.6 4e-13
gi|227488901|ref|ZP_03919217.1| conserved hypothetical protein [... 74.3 8e-12
gi|333919584|ref|YP_004493165.1| hypothetical protein AS9A_1916 ... 71.6 5e-11
gi|262202329|ref|YP_003273537.1| hypothetical protein Gbro_2402 ... 66.2 2e-09
gi|343927992|ref|ZP_08767458.1| hypothetical protein GOALK_099_0... 64.7 6e-09
gi|225021410|ref|ZP_03710602.1| hypothetical protein CORMATOL_01... 48.5 4e-04
gi|300858497|ref|YP_003783480.1| hypothetical protein cpfrc_0108... 43.9 0.010
gi|302206207|gb|ADL10549.1| 1-deoxy-D-xylulose-5-phosphate synth... 43.9 0.011
gi|294500800|ref|YP_003564500.1| cytochrome c oxidase Cu(A) cent... 42.4 0.032
gi|336325604|ref|YP_004605570.1| hypothetical protein CRES_1050 ... 42.4 0.035
gi|295706145|ref|YP_003599220.1| cytochrome c oxidase Cu(A) cent... 42.0 0.040
gi|213965579|ref|ZP_03393773.1| hypothetical protein CORAM0001_0... 40.8 0.081
gi|345443039|gb|AEN88056.1| Cytochrome c oxidase Cu(A) center as... 40.8 0.094
gi|172040702|ref|YP_001800416.1| hypothetical protein cur_1022 [... 40.0 0.17
gi|337290757|ref|YP_004629778.1| hypothetical protein CULC22_011... 38.9 0.36
gi|334696870|gb|AEG81667.1| hypothetical protein CULC809_01134 [... 38.5 0.43
gi|333030394|ref|ZP_08458455.1| Glycoside hydrolase 97 [Bacteroi... 37.7 0.82
gi|227549257|ref|ZP_03979306.1| conserved hypothetical protein [... 37.4 1.1
gi|320586715|gb|EFW99385.1| enoyl-hydratase isomerase family pro... 37.0 1.2
gi|227833061|ref|YP_002834768.1| hypothetical protein cauri_1237... 37.0 1.4
>gi|15608614|ref|NP_215992.1| hypothetical protein Rv1476 [Mycobacterium tuberculosis H37Rv]
gi|15840937|ref|NP_335974.1| hypothetical protein MT1523 [Mycobacterium tuberculosis CDC1551]
gi|31792671|ref|NP_855164.1| hypothetical protein Mb1512 [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=186
Score = 374 bits (961), Expect = 3e-102, Method: Compositional matrix adjust.
Identities = 186/186 (100%), Positives = 186/186 (100%), Gaps = 0/186 (0%)
Query 1 MTGPYFPQTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLK 60
MTGPYFPQTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLK
Sbjct 1 MTGPYFPQTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLK 60
Query 61 IVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTG 120
IVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTG
Sbjct 61 IVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTG 120
Query 121 NPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGD 180
NPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGD
Sbjct 121 NPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGD 180
Query 181 DLNQGV 186
DLNQGV
Sbjct 181 DLNQGV 186
>gi|240172220|ref|ZP_04750879.1| hypothetical protein MkanA1_23094 [Mycobacterium kansasii ATCC
12478]
Length=192
Score = 306 bits (784), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 151/181 (84%), Positives = 160/181 (89%), Gaps = 0/181 (0%)
Query 6 FPQTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLD 65
PQTIPFLP+YIPQDVDMTAVKA+VAA+GVSAPP A PGLLEVV HA DEGI+LKIVLLD
Sbjct 12 LPQTIPFLPAYIPQDVDMTAVKAQVAAVGVSAPPPAVPGLLEVVNHAHDEGINLKIVLLD 71
Query 66 HNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQS 125
HNPPNDTPLRDIATVVGADY DATVLVLSP+YVGSYSTQYPRVTLEAGEDHSKTGNPVQS
Sbjct 72 HNPPNDTPLRDIATVVGADYKDATVLVLSPSYVGSYSTQYPRVTLEAGEDHSKTGNPVQS 131
Query 126 AQNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGDDLNQG 185
AQNF+HEL TPEFPW+ LTI LLI VLAAAVG R MQLR RRSATS D+A D QG
Sbjct 132 AQNFLHELDTPEFPWAGLTIFLLIAVLAAAVGTRFMQLRARRSATSGDSADTISDQAGQG 191
Query 186 V 186
+
Sbjct 192 I 192
>gi|183982296|ref|YP_001850587.1| hypothetical protein MMAR_2283 [Mycobacterium marinum M]
gi|183175622|gb|ACC40732.1| conserved membrane protein [Mycobacterium marinum M]
Length=183
Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/180 (77%), Positives = 155/180 (87%), Gaps = 0/180 (0%)
Query 7 PQTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDH 66
P+TIPFLP+YIPQDVDM AVKAEVAA+GVSAPPAA PGL+EVV A+ +GI+LKIVL+DH
Sbjct 4 PETIPFLPAYIPQDVDMAAVKAEVAAIGVSAPPAALPGLVEVVSQAQHDGINLKIVLIDH 63
Query 67 NPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSA 126
NPPNDTPLRDIATVVGADY D TVL LSPNYVGSYS ++PRVTLEAGEDHSKTGN VQSA
Sbjct 64 NPPNDTPLRDIATVVGADYPDVTVLALSPNYVGSYSKEFPRVTLEAGEDHSKTGNAVQSA 123
Query 127 QNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGDDLNQGV 186
QNF++EL TPEFPW+ LTI LLIGVLAAAVG R MQLR RRSATS + + + + GV
Sbjct 124 QNFLNELDTPEFPWTGLTIFLLIGVLAAAVGTRFMQLRARRSATSPEVSHAVAEPADPGV 183
>gi|15827971|ref|NP_302234.1| hypothetical protein ML1813 [Mycobacterium leprae TN]
gi|221230448|ref|YP_002503864.1| hypothetical protein MLBr_01813 [Mycobacterium leprae Br4923]
gi|13093524|emb|CAC30766.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933555|emb|CAR71908.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=190
Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 140/179 (79%), Positives = 151/179 (85%), Gaps = 0/179 (0%)
Query 7 PQTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDH 66
PQTIP LP YIPQDVDMT VK+EVAA GVSA PAA PGLLEVV HA+ EGI+LKIVLLDH
Sbjct 11 PQTIPMLPIYIPQDVDMTVVKSEVAAAGVSASPAAMPGLLEVVSHAQAEGINLKIVLLDH 70
Query 67 NPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSA 126
N PNDTPLRDIATVVGADY D TVL LSPNYVGSYST YPRVTLEAGED SKTGNPVQSA
Sbjct 71 NLPNDTPLRDIATVVGADYPDVTVLTLSPNYVGSYSTHYPRVTLEAGEDISKTGNPVQSA 130
Query 127 QNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGDDLNQG 185
QNF+ EL+ PEFPW+ LTIVLLIGVL AA+G R MQLR +R ATS DAA +D+N+
Sbjct 131 QNFLGELNVPEFPWTVLTIVLLIGVLVAAIGTRFMQLRSKRLATSLDAAGILAEDVNRA 189
>gi|118617146|ref|YP_905478.1| hypothetical protein MUL_1485 [Mycobacterium ulcerans Agy99]
gi|118569256|gb|ABL04007.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=192
Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/180 (76%), Positives = 154/180 (86%), Gaps = 0/180 (0%)
Query 7 PQTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDH 66
P+TIPFLP+YIPQ+VDM AVKAEVAA+GVSAPP A PGL+EVV A+ +GI+LKIVL+DH
Sbjct 13 PETIPFLPAYIPQEVDMAAVKAEVAAIGVSAPPEALPGLVEVVSQAQHDGINLKIVLIDH 72
Query 67 NPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSA 126
NPPNDTPLRDIATVVGADY D TVL LSP+YVGSYS ++PRVTLEAGEDHSKTGN VQSA
Sbjct 73 NPPNDTPLRDIATVVGADYPDVTVLALSPSYVGSYSKEFPRVTLEAGEDHSKTGNAVQSA 132
Query 127 QNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGDDLNQGV 186
QNF++EL TPEFPW+ LTI LLIGVLAAAVG R MQLR RRSATS + A + + GV
Sbjct 133 QNFLNELDTPEFPWTGLTISLLIGVLAAAVGTRFMQLRARRSATSPEVAQVVAEPADPGV 192
>gi|254819546|ref|ZP_05224547.1| hypothetical protein MintA_06454 [Mycobacterium intracellulare
ATCC 13950]
Length=190
Score = 270 bits (690), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 133/179 (75%), Positives = 151/179 (85%), Gaps = 0/179 (0%)
Query 7 PQTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDH 66
PQT+P LP+YIP DVDMT +KA+VAA GVSAPPAA PGLLEVV A +GI+LKIVLLDH
Sbjct 11 PQTVPVLPAYIPVDVDMTMIKAQVAATGVSAPPAAMPGLLEVVNQAHGDGINLKIVLLDH 70
Query 67 NPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSA 126
NPPNDTPLRDI+TVVGADY DATVL LSP+YVGSYSTQ+PRVTLEAGED +KTGNPV SA
Sbjct 71 NPPNDTPLRDISTVVGADYHDATVLTLSPSYVGSYSTQFPRVTLEAGEDIAKTGNPVVSA 130
Query 127 QNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGDDLNQG 185
Q+F+HEL TPEFPW+ LTI LLI V AAAVG RL+Q+RG RSATS ++A + N G
Sbjct 131 QHFLHELDTPEFPWTGLTIFLLIAVFAAAVGTRLLQVRGERSATSDESATAEDAEANTG 189
>gi|342858767|ref|ZP_08715422.1| hypothetical protein MCOL_07816 [Mycobacterium colombiense CECT
3035]
gi|342134471|gb|EGT87651.1| hypothetical protein MCOL_07816 [Mycobacterium colombiense CECT
3035]
Length=182
Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 129/174 (75%), Positives = 146/174 (84%), Gaps = 0/174 (0%)
Query 13 LPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDT 72
LP YIPQDVDM+ +KA+VAA GVSAPP+A PGLL+VV AR +GI+LKIVLLDHNPPNDT
Sbjct 9 LPLYIPQDVDMSVIKAQVAADGVSAPPSAMPGLLDVVNQARADGINLKIVLLDHNPPNDT 68
Query 73 PLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHE 132
PLRDI+TVVGADY DATVL LSP+YVGSYSTQ+PRVTLEAGED +KTGNPV SAQ+F+HE
Sbjct 69 PLRDISTVVGADYHDATVLTLSPSYVGSYSTQFPRVTLEAGEDIAKTGNPVVSAQHFLHE 128
Query 133 LSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGDDLNQGV 186
L TPEFPW+ LTI LLI V AAAVG RL+QLR +RSAT+ D A D N V
Sbjct 129 LDTPEFPWTGLTIFLLIAVFAAAVGTRLLQLRSKRSATTDDTAANPAADANTAV 182
>gi|41407300|ref|NP_960136.1| hypothetical protein MAP1202 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395652|gb|AAS03519.1| hypothetical protein MAP_1202 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=208
Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/162 (80%), Positives = 140/162 (87%), Gaps = 0/162 (0%)
Query 14 PSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTP 73
P YIP DVDMT VKA VAA GVSAPPAA PGLLEVV AR EGI+LKIVLLDHNPPNDTP
Sbjct 36 PLYIPVDVDMTMVKAAVAATGVSAPPAAMPGLLEVVNQARAEGINLKIVLLDHNPPNDTP 95
Query 74 LRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHEL 133
LRDI+TVVGADY DATVL LSPNYVGSYSTQ+PRVTLEAGED +KTGNPV SAQ+F+HEL
Sbjct 96 LRDISTVVGADYHDATVLTLSPNYVGSYSTQFPRVTLEAGEDIAKTGNPVVSAQHFLHEL 155
Query 134 STPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAA 175
TPEFPW+ LTI LLI V AAAVG R++Q+R RR+AT DAA
Sbjct 156 DTPEFPWTGLTIFLLIAVFAAAVGTRVLQVRSRRAATPPDAA 197
>gi|254775747|ref|ZP_05217263.1| hypothetical protein MaviaA2_13915 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|336458029|gb|EGO37016.1| hypothetical protein MAPs_17270 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=181
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/162 (80%), Positives = 140/162 (87%), Gaps = 0/162 (0%)
Query 14 PSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTP 73
P YIP DVDMT VKA VAA GVSAPPAA PGLLEVV AR EGI+LKIVLLDHNPPNDTP
Sbjct 9 PLYIPVDVDMTMVKAAVAATGVSAPPAAMPGLLEVVNQARAEGINLKIVLLDHNPPNDTP 68
Query 74 LRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHEL 133
LRDI+TVVGADY DATVL LSPNYVGSYSTQ+PRVTLEAGED +KTGNPV SAQ+F+HEL
Sbjct 69 LRDISTVVGADYHDATVLTLSPNYVGSYSTQFPRVTLEAGEDIAKTGNPVVSAQHFLHEL 128
Query 134 STPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAA 175
TPEFPW+ LTI LLI V AAAVG R++Q+R RR+AT DAA
Sbjct 129 DTPEFPWTGLTIFLLIAVFAAAVGTRVLQVRSRRAATPPDAA 170
>gi|118462963|ref|YP_882484.1| hypothetical protein MAV_3302 [Mycobacterium avium 104]
gi|118164250|gb|ABK65147.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=181
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/162 (80%), Positives = 140/162 (87%), Gaps = 0/162 (0%)
Query 14 PSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTP 73
P YIP DVDMT VKA VAA GVSAPPAA PGLLEVV AR EGI+LKIVLLDHNPPNDTP
Sbjct 9 PLYIPVDVDMTMVKAAVAATGVSAPPAAMPGLLEVVNQARAEGINLKIVLLDHNPPNDTP 68
Query 74 LRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHEL 133
LRDI+TVVGADY DATVL LSPNYVGSYSTQ+PRVTLEAGED +KTGNPV SAQ+F+HEL
Sbjct 69 LRDISTVVGADYHDATVLTLSPNYVGSYSTQFPRVTLEAGEDIAKTGNPVVSAQHFLHEL 128
Query 134 STPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAA 175
TPEFPW+ LTI LLI V AAAVG R++Q+R RR+AT DAA
Sbjct 129 DTPEFPWTGLTIFLLIAVFAAAVGTRVLQVRSRRAATPPDAA 170
>gi|296170663|ref|ZP_06852238.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894652|gb|EFG74386.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=180
Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/170 (75%), Positives = 144/170 (85%), Gaps = 1/170 (0%)
Query 11 PFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPN 70
P LP YIPQDVDMTAVKA+VAA GVSAP A PGLL +V A +GI+LKIVLLDHNPPN
Sbjct 5 PVLPVYIPQDVDMTAVKAQVAATGVSAPAADMPGLLHIVDEAHAKGINLKIVLLDHNPPN 64
Query 71 DTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFV 130
DTPLRDI+TVVGADY DATVL LSP+YVGSYSTQ+PRVTLEAGED +KTGNPV SAQ+FV
Sbjct 65 DTPLRDISTVVGADYHDATVLTLSPSYVGSYSTQFPRVTLEAGEDIAKTGNPVVSAQHFV 124
Query 131 HELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGD 180
+ELSTPEFPW+ LTI LL+ V AAAV R++Q+R RR AT TD +PGA +
Sbjct 125 NELSTPEFPWTGLTIFLLLAVFAAAVATRVLQVRSRRPATPTD-SPGAQE 173
>gi|126435071|ref|YP_001070762.1| hypothetical protein Mjls_2487 [Mycobacterium sp. JLS]
gi|126234871|gb|ABN98271.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=178
Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/164 (60%), Positives = 124/164 (76%), Gaps = 0/164 (0%)
Query 8 QTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHN 67
IPFLP +IP DVDM V A+V GVSAP A L +VV AR +GIDLKIV++D N
Sbjct 5 HVIPFLPGFIPPDVDMNMVIADVGDDGVSAPGADVAALRQVVSEARSDGIDLKIVVIDTN 64
Query 68 PPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQ 127
P DTPLRDIAT VG Y +TVL LSP+Y G+YS+ + RVTLEAG+D +KTG+PVQS++
Sbjct 65 PHIDTPLRDIATEVGQAYPGSTVLALSPSYAGTYSSTFDRVTLEAGQDLAKTGDPVQSSK 124
Query 128 NFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATS 171
NFV +L+TP+FPW+ALTIVL+IGV AA R +Q+RG+R+A +
Sbjct 125 NFVGQLTTPDFPWTALTIVLVIGVAAATAATRWLQIRGKRAAAA 168
>gi|119868530|ref|YP_938482.1| hypothetical protein Mkms_2495 [Mycobacterium sp. KMS]
gi|119694619|gb|ABL91692.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=192
Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/173 (59%), Positives = 128/173 (74%), Gaps = 1/173 (0%)
Query 8 QTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHN 67
IPFLP +IP DVDM V A+V GVSAP A L +VV AR +GIDLKIV++D N
Sbjct 19 HVIPFLPGFIPPDVDMNMVIADVGDDGVSAPGADVAALRQVVSEARSDGIDLKIVVIDTN 78
Query 68 PPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQ 127
P DTPLRDIAT VG Y +TVL LSP+Y G+YS+ + RVTLEAG+D +KTG+PVQS++
Sbjct 79 PHIDTPLRDIATEVGQAYPGSTVLALSPSYAGTYSSTFDRVTLEAGQDLAKTGDPVQSSK 138
Query 128 NFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPGAGD 180
NFV +L+TP+FPW+ALTIVL+IGV AA R +Q+RG+R+A + +A P D
Sbjct 139 NFVGQLTTPDFPWTALTIVLVIGVAAATAATRWLQIRGKRAA-AAEAGPTPAD 190
>gi|333990878|ref|YP_004523492.1| hypothetical protein JDM601_2238 [Mycobacterium sp. JDM601]
gi|333486846|gb|AEF36238.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=183
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 117/180 (65%), Gaps = 7/180 (3%)
Query 1 MTGPYFPQTIPF-------LPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHAR 53
MT P+ P IP L P D M VK VA GVSAP A P L V+ A
Sbjct 1 MTTPHPPAYIPGELCITVGLDPATPPDECMALVKVAVAVDGVSAPAADVPALRNVIADAA 60
Query 54 DEGIDLKIVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAG 113
+GIDLKIV + NP DT LRD+ATVVG DY DATVLVLS YVGSYS ++ R LEA
Sbjct 61 RDGIDLKIVEVARNPGMDTALRDVATVVGYDYPDATVLVLSTTYVGSYSGRFHRSKLEAA 120
Query 114 EDHSKTGNPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTD 173
EDH+KTG+PV SAQNFV+EL++P+ PW+ LT+ LLIGV AAAVG R +Q R +R S +
Sbjct 121 EDHAKTGDPVTSAQNFVNELNSPDLPWTGLTVALLIGVAAAAVGTRFLQRRSKRVLNSLE 180
>gi|108799417|ref|YP_639614.1| hypothetical protein Mmcs_2450 [Mycobacterium sp. MCS]
gi|108769836|gb|ABG08558.1| putative membrane protein [Mycobacterium sp. MCS]
Length=159
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/149 (60%), Positives = 113/149 (76%), Gaps = 0/149 (0%)
Query 23 MTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDIATVVG 82
M V A+V GVSAP A L +VV AR +GIDLKIV++D NP DTPLRDIAT VG
Sbjct 1 MNMVIADVGDDGVSAPGADVAALRQVVSEARSDGIDLKIVVIDTNPHIDTPLRDIATEVG 60
Query 83 ADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPEFPWSA 142
Y +TVL LSP+Y G+YS+ + RVTLEAG+D +KTG+PVQS++NFV +L+TP+FPW+A
Sbjct 61 QAYPGSTVLALSPSYAGTYSSTFDRVTLEAGQDLAKTGDPVQSSKNFVGQLTTPDFPWTA 120
Query 143 LTIVLLIGVLAAAVGARLMQLRGRRSATS 171
LTIVL+IGV AA R +Q+RG+R+A +
Sbjct 121 LTIVLVIGVAAATAATRWLQIRGKRAAAA 149
>gi|145224248|ref|YP_001134926.1| hypothetical protein Mflv_3664 [Mycobacterium gilvum PYR-GCK]
gi|145216734|gb|ABP46138.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=197
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/201 (49%), Positives = 126/201 (63%), Gaps = 25/201 (12%)
Query 1 MTGPYFPQTIPFLPSYIPQ-----------------DVDMTAVKAEVAALGVSAP----P 39
M+G F +P P+YIP D M V+ VA GVS P P
Sbjct 1 MSGLTF---VPIAPTYIPPELCQSVGVAMEPGKPTPDACMDIVRTNVAESGVSVPIGTDP 57
Query 40 AATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVG 99
A L++VV AR +GIDLKIV++D NPP +PLRDIAT VG +TVL +SP++ G
Sbjct 58 AVEQQLVDVVAGARADGIDLKIVVIDANPPIHSPLRDIATEVGEANPGSTVLAISPSFAG 117
Query 100 SYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGAR 159
+YS+++ RVTLEAGED +KTGNPVQS+QNFV EL+T FPW+ TIVL+I V+ A G R
Sbjct 118 TYSSEFDRVTLEAGEDVAKTGNPVQSSQNFVSELTTSHFPWTPFTIVLVIAVILAVAGTR 177
Query 160 LMQLRGRRSATSTDAAPGAGD 180
++Q G+RS TST AP + D
Sbjct 178 VLQQWGKRS-TSTGTAPSSSD 197
>gi|315444584|ref|YP_004077463.1| hypothetical protein Mspyr1_30100 [Mycobacterium sp. Spyr1]
gi|315262887|gb|ADT99628.1| hypothetical protein Mspyr1_30100 [Mycobacterium sp. Spyr1]
Length=197
Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/192 (49%), Positives = 122/192 (64%), Gaps = 24/192 (12%)
Query 1 MTGPYFPQTIPFLPSYIPQ-----------------DVDMTAVKAEVAALGVSAP----P 39
M+G F +P P+YIP D M V+ VA GVS P P
Sbjct 1 MSGLTF---VPIAPTYIPPELCQSVGVAMEPGKPTPDACMDIVRTNVAESGVSVPIGTDP 57
Query 40 AATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVG 99
A L++VV AR +GIDLKIV++D NPP +PLRDIAT VG +TVL +SP++ G
Sbjct 58 AVEQQLVDVVAGARADGIDLKIVVIDANPPIHSPLRDIATEVGEANPGSTVLAISPSFAG 117
Query 100 SYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGAR 159
+YS+++ RVTLEAGED +KTGNPVQS+QNFV EL+T FPW+ TIVL+I V+ A G R
Sbjct 118 TYSSEFDRVTLEAGEDVAKTGNPVQSSQNFVSELTTSHFPWTPFTIVLVIAVILAVAGTR 177
Query 160 LMQLRGRRSATS 171
++Q G+RSAT+
Sbjct 178 VLQKWGKRSATT 189
>gi|118473730|ref|YP_887459.1| hypothetical protein MSMEG_3144 [Mycobacterium smegmatis str.
MC2 155]
gi|118175017|gb|ABK75913.1| putative membrane protein [Mycobacterium smegmatis str. MC2 155]
Length=200
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/187 (52%), Positives = 125/187 (67%), Gaps = 19/187 (10%)
Query 1 MTGPYFPQTIPFLPSYIPQDVD----------------MTAVKAEVAALGVSAPPAATPG 44
MTGP+ IPFLP+YIP ++ M AV+A+V GVSAPP A G
Sbjct 1 MTGPH---VIPFLPAYIPVEICDIAGIDPAVPDAVAQCMAAVQADVREDGVSAPPEAVEG 57
Query 45 LLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQ 104
L +VV AR+ GIDLKIV + NP DTPLRDIAT VG + ATVL +SP++ G+YST
Sbjct 58 LRQVVADAREAGIDLKIVAIPRNPAIDTPLRDIATEVGQENPGATVLAVSPSFAGTYSTS 117
Query 105 YPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLR 164
+ RVTLEAG+D +KTG+PV SA NF+ E+ P+FPW LTIVL++GV AAA R++Q+R
Sbjct 118 FDRVTLEAGQDVAKTGDPVLSANNFLAEIQKPDFPWMTLTIVLVLGVAAAAALTRVLQVR 177
Query 165 GRRSATS 171
+ A+S
Sbjct 178 SKALASS 184
>gi|120403730|ref|YP_953559.1| hypothetical protein Mvan_2746 [Mycobacterium vanbaalenii PYR-1]
gi|119956548|gb|ABM13553.1| hypothetical protein Mvan_2746 [Mycobacterium vanbaalenii PYR-1]
Length=203
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/194 (50%), Positives = 128/194 (66%), Gaps = 22/194 (11%)
Query 1 MTGPYFPQTIPFLPSYIPQ----------------DVDMTAVKAEVAALGVSA---PPAA 41
+TGP F +PFLP+YIP D+ M V+++VA GVSA PAA
Sbjct 9 VTGPLF---VPFLPTYIPPELCHTVGVDPQLPGAPDLCMDIVRSDVAESGVSARGLDPAA 65
Query 42 TPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSY 101
L +VV+ A +GIDLKIV++D NPP DTPLRDIAT VG ATVL LSP++ G++
Sbjct 66 VSQLTQVVEDAGVQGIDLKIVVIDANPPIDTPLRDIATEVGEANPGATVLALSPSFAGTF 125
Query 102 STQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLM 161
S ++ RVTLEAGED +KTG+PV S++NFV EL+T FPW+ +IV++ V+ A V RL+
Sbjct 126 SPEFDRVTLEAGEDLAKTGDPVLSSKNFVGELTTTHFPWTPFSIVVVSAVVLAVVATRLL 185
Query 162 QLRGRRSATSTDAA 175
Q G+RS+ S +AA
Sbjct 186 QKWGKRSSASEEAA 199
>gi|169629813|ref|YP_001703462.1| hypothetical protein MAB_2729c [Mycobacterium abscessus ATCC
19977]
gi|169241780|emb|CAM62808.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=185
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/178 (50%), Positives = 113/178 (64%), Gaps = 20/178 (11%)
Query 7 PQTIP-FLPSYIPQDVDMT-----------------AVKAEVAALGVSAPPAATPGLLEV 48
PQ +P F+P+ + Q V ++ +A+V GV+A PA PGL EV
Sbjct 3 PQHLPTFIPAELCQAVGVSIQTAGTDPVGWSAKCLQMARADVNEDGVAAAPADVPGLKEV 62
Query 49 VQHARDEGIDLKIVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRV 108
V A + IDLK+V L NP DTPLRDIAT +G D+ D+T+LV+SP+Y G+YS +Y RV
Sbjct 63 VAKAHAKDIDLKVVALPGNPWIDTPLRDIATEIGKDHPDSTILVISPSYAGTYSAKYDRV 122
Query 109 TLEAGEDHSKTGNPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGR 166
TLEAG+D +KTGNPV SA NFV EL F W+ALTIVL++ V AA G L +RGR
Sbjct 123 TLEAGQDVAKTGNPVLSANNFVDELGREHFSWTALTIVLVVLVAAACAGIAL--VRGR 178
>gi|111024158|ref|YP_707130.1| hypothetical protein RHA1_ro07208 [Rhodococcus jostii RHA1]
gi|110823688|gb|ABG98972.1| possible membrane protein [Rhodococcus jostii RHA1]
Length=201
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/163 (45%), Positives = 101/163 (62%), Gaps = 2/163 (1%)
Query 13 LPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDT 72
L + +P+D+D++ V A+V+ GVSAP L VV A D GI L IV+LD +P D+
Sbjct 23 LSTDLPEDIDVSDVVADVSDDGVSAPSDEASDLAAVVDRAADHGIKLSIVVLDEDPGRDS 82
Query 73 PLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHE 132
LRD+AT VGA+ TVLVLSP++VG+YS RV LE+G+D + TG+ V SA +FV E
Sbjct 83 QLRDLATEVGAEEG-GTVLVLSPSWVGTYSDSISRVLLESGQDRTYTGDAVVSANHFVDE 141
Query 133 LSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAA 175
+ P PW+ T V++ V+ A+ GA RRS + D A
Sbjct 142 VIEPGPPWALFTAVIVAIVVIAS-GATFFAKSRRRSGSRDDTA 183
>gi|226366405|ref|YP_002784188.1| hypothetical protein ROP_69960 [Rhodococcus opacus B4]
gi|226244895|dbj|BAH55243.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=202
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/132 (47%), Positives = 90/132 (69%), Gaps = 1/132 (0%)
Query 13 LPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDT 72
L + +P+D+D++ V A+V+ GVSAP T L+ VV A + G++L IV+LD +P D+
Sbjct 23 LSTDLPEDIDVSDVVADVSDDGVSAPSDETGELVAVVDRAAEHGLELSIVVLDEDPGRDS 82
Query 73 PLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHE 132
LRD+AT VGA+ TVLVLSP++VG+YS RV LE+G+D + TG+PV +A +FV E
Sbjct 83 QLRDLATEVGAEEG-GTVLVLSPSWVGTYSDSISRVLLESGQDRTYTGDPVVAANHFVDE 141
Query 133 LSTPEFPWSALT 144
+ P PW+ T
Sbjct 142 VVEPGPPWALFT 153
>gi|312139642|ref|YP_004006978.1| membrane protein [Rhodococcus equi 103S]
gi|325676680|ref|ZP_08156354.1| hypothetical protein HMPREF0724_14137 [Rhodococcus equi ATCC
33707]
gi|311888981|emb|CBH48294.1| putative membrane protein [Rhodococcus equi 103S]
gi|325552462|gb|EGD22150.1| hypothetical protein HMPREF0724_14137 [Rhodococcus equi ATCC
33707]
Length=185
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Query 1 MTGPYFPQTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLK 60
MT P +P + + IP DV + AV A+++ VSAP A GL VV A+++G+ L+
Sbjct 1 MTASIAPVLLPNI-AKIPDDVSLDAVFADLSDDNVSAPDADVEGLQAVVARAQEDGVTLR 59
Query 61 IVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTG 120
IV++D +P PLRD+AT VG TVLVLSP+ G+YS RV LE +D + TG
Sbjct 60 IVVVDSDPHGPEPLRDLATEVGK-VEGGTVLVLSPSANGTYSDTISRVVLENAQDRTFTG 118
Query 121 NPVQSAQNFVHELSTPEFPW 140
NPV SA NFV ++ P W
Sbjct 119 NPVDSANNFVDGITEPAPRW 138
>gi|54025452|ref|YP_119694.1| hypothetical protein nfa34820 [Nocardia farcinica IFM 10152]
gi|54016960|dbj|BAD58330.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=196
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/164 (43%), Positives = 96/164 (59%), Gaps = 10/164 (6%)
Query 13 LPSYIPQDVD---MTAVKAEVAALGVSAPPAA-TPGLLEVVQHARDEGIDLKIVLLDHNP 68
L + +P VD + ++K +VA V+AP GL +V AR EGI L IV++ NP
Sbjct 20 LAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIVAEARAEGIPLSIVVIPGNP 79
Query 69 PNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGED--HSKTGNPVQSA 126
+D+ LRD+AT VG TV+VLS ++VG+YS RV LE ED SK GN V++A
Sbjct 80 GHDSNLRDLATEVG-KTEQGTVVVLSDDWVGTYSDSISRVKLEWAEDAAKSKQGNSVEAA 138
Query 127 QNFVHELSTPE-FPWSALTIVLLIGVLAAAVGARLMQLRGRRSA 169
+ FV L PE F W+A+T VL+ G A G L ++ RR+A
Sbjct 139 RIFVDRLEQPETFSWTAITGVLIAGTALAVAGLHL--IKARRAA 180
>gi|226306556|ref|YP_002766516.1| hypothetical protein RER_30690 [Rhodococcus erythropolis PR4]
gi|226185673|dbj|BAH33777.1| hypothetical protein RER_30690 [Rhodococcus erythropolis PR4]
Length=196
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/134 (41%), Positives = 77/134 (58%), Gaps = 3/134 (2%)
Query 34 GVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDIATVVGADYSDATVLVL 93
GVSAP + GL VV AR+ G+DL +V++D NP + LRD+AT VG TVLVL
Sbjct 39 GVSAPESDVVGLTAVVTDARERGVDLSVVVVDANPGRPSDLRDLATTVG-KTEGGTVLVL 97
Query 94 SPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPEFPWSALTIVLLIGVLA 153
SP+++GSYS RV LE +D S + +A F HE+ P PW+ T++++ L
Sbjct 98 SPDWMGSYSDSISRVQLETAQDRSFGESASVTADRFSHEIVAPGPPWTLYTVLVI--ALV 155
Query 154 AAVGARLMQLRGRR 167
A + ++ RR
Sbjct 156 AVIAGITFAVKWRR 169
>gi|326382233|ref|ZP_08203925.1| hypothetical protein SCNU_04786 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198963|gb|EGD56145.1| hypothetical protein SCNU_04786 [Gordonia neofelifaecis NRRL
B-59395]
Length=191
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/164 (38%), Positives = 87/164 (54%), Gaps = 3/164 (1%)
Query 20 DVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDIAT 79
++DM A+K + GV AP L E+VQ A +G L +V+LD + P T RDIAT
Sbjct 18 NLDMAAIKESLTTTGVWAPADQQAALKELVQQADADGHSLHVVVLDQSYPKFTAYRDIAT 77
Query 80 VVGADYSDATVLVLSPNYVGSYSTQYPRVTLE-AGEDHSKTGNPVQSAQNFVHELSTPEF 138
+ + TVLV P+ G+ S+++ RV LE A D +K Q+A H+ P
Sbjct 78 ELQSQVG-GTVLVFGPSGSGTASSEFSRVQLEDASSDVTKGSTATQAATQMYHKAVDPNV 136
Query 139 PWSALTIVLLIGVLAAAVGARLMQLRGRRSAT-STDAAPGAGDD 181
W+ +TI L++ V+ AV ARL R RR+ + AA G G D
Sbjct 137 NWNGVTIGLIVLVVIGAVIARLQMKRKRRAESDQVPAAVGGGSD 180
>gi|229493439|ref|ZP_04387224.1| putative membrane protein [Rhodococcus erythropolis SK121]
gi|229319400|gb|EEN85236.1| putative membrane protein [Rhodococcus erythropolis SK121]
Length=196
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/111 (46%), Positives = 65/111 (59%), Gaps = 1/111 (0%)
Query 34 GVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDIATVVGADYSDATVLVL 93
GVSAP GL VV AR+ G+DL +V++D NP + LRD+AT VG TVLVL
Sbjct 39 GVSAPADDVAGLTAVVTDARERGVDLSVVVVDANPGRPSDLRDLATTVGK-TEGGTVLVL 97
Query 94 SPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPEFPWSALT 144
SP+++GSYS RV LE +D S + +A F HE+ P PW+ T
Sbjct 98 SPDWMGSYSDSISRVQLETAQDRSFGESASVTADRFSHEIVAPGPPWTLYT 148
>gi|319951197|ref|ZP_08025038.1| hypothetical protein ES5_16179 [Dietzia cinnamea P4]
gi|319435147|gb|EFV90426.1| hypothetical protein ES5_16179 [Dietzia cinnamea P4]
Length=176
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/125 (42%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query 17 IPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRD 76
+PQ +D AV A++A GVSAP GL VV+ A D G+DLK+V + T RD
Sbjct 26 VPQWLDFPAVVADLADDGVSAPEPFVEGLRTVVEEAADRGLDLKVVYTEAPAAVYTDARD 85
Query 77 IATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHS-KTGNPVQSAQNFVHELST 135
+AT + +Y + T+LV +P ++GS S PR LEAG+D + + +PV SA F H+++
Sbjct 86 VATFLNEEY-EGTILVRTPAFIGSSSDTIPRHRLEAGQDDAWEEFDPVASAAVFAHKVTA 144
Query 136 PEFPW 140
P PW
Sbjct 145 PTPPW 149
>gi|317508710|ref|ZP_07966365.1| hypothetical protein HMPREF9336_02737 [Segniliparus rugosus ATCC
BAA-974]
gi|316253031|gb|EFV12446.1| hypothetical protein HMPREF9336_02737 [Segniliparus rugosus ATCC
BAA-974]
Length=188
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 86/150 (58%), Gaps = 10/150 (6%)
Query 17 IPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPND---TP 73
+P D A++AE+A GV A PA PGL +VV A+ +G+D ++++L PP D T
Sbjct 13 LPAGADPAAIRAELARTGVYAGPADRPGLAQVVARAKGQGLDFEVLVL---PPGDYVPTQ 69
Query 74 LRDIAT-VVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHE 132
LR++AT V G+D TVL ++P Y GSYS R LE +D GNP +A F+
Sbjct 70 LRNLATEVAGSD--PVTVLAVAPGYAGSYSASISRARLENAQDELD-GNPTVAANQFLDR 126
Query 133 LSTPEFPWSALTIVLLIGVLAAAVGARLMQ 162
L P W+ +T VL + VL A V ARL Q
Sbjct 127 LLAPSVSWTEITAVLSVLVLGAVVVARLSQ 156
>gi|296139784|ref|YP_003647027.1| hypothetical protein Tpau_2076 [Tsukamurella paurometabola DSM
20162]
gi|296027918|gb|ADG78688.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=201
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/180 (35%), Positives = 95/180 (53%), Gaps = 13/180 (7%)
Query 10 IPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGL----LEVVQHARDEGID-LKIVLL 64
+P L + +P DVDMTA+KA++A GV+ A G+ VV+ A +GI+ K+++L
Sbjct 4 LPIL-TEVPTDVDMTALKADLADGGVAILNPAYQGMESQVAAVVKDAEAKGIENFKVIVL 62
Query 65 DHNPPNDTPLRDIAT-VVGADYSDATVLVLSPNYVGSYST-QYPRVTLEAGED-HSKTG- 120
H+ DT LRD+ T + + +VLV+SP V +ST Q R +E +D H TG
Sbjct 63 AHDYRPDTSLRDLGTELAKQEGGTMSVLVMSPTQVAGFSTGQLSRYQIEKAQDGHKPTGL 122
Query 121 ---NPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDAAPG 177
NP +A++FV FPW+ T+ L++ V A AR++ R + A G
Sbjct 123 TLNNPPAAARDFVDIADNATFPWAGFTVALVLFVAVLAGVARVITRNRSREVDAARRAAG 182
>gi|296393884|ref|YP_003658768.1| hypothetical protein Srot_1474 [Segniliparus rotundus DSM 44985]
gi|296181031|gb|ADG97937.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=176
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/159 (37%), Positives = 86/159 (55%), Gaps = 4/159 (2%)
Query 17 IPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRD 76
+P D A++A++ A GV A P+ PGL E V A+ +G+ ++++L P T LR+
Sbjct 10 LPPGSDPAAIRADLVATGVHASPSDRPGLTEAVARAKGQGLSFEVLVLPPGPYVPTQLRN 69
Query 77 IAT-VVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELST 135
+AT V G+D TVL L+P +VGSYS RV LE +D NP +A F+ L
Sbjct 70 LATEVAGSD--PVTVLALAPGFVGSYSASVTRVRLENAQDELDA-NPTVAANQFLDRLFA 126
Query 136 PEFPWSALTIVLLIGVLAAAVGARLMQLRGRRSATSTDA 174
P W+ ++ L + VL A + A+L + GR S A
Sbjct 127 PSVSWTGVSAALSVLVLVAVLVAKLSRWGGRWKTRSGRA 165
>gi|227488901|ref|ZP_03919217.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227542103|ref|ZP_03972152.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227091323|gb|EEI26635.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182154|gb|EEI63126.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=193
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/158 (34%), Positives = 79/158 (50%), Gaps = 8/158 (5%)
Query 17 IPQDVDMTAVKAEVAALGV------SAPPAATPGLLEVVQHARDEGI-DLKIVLLDHNPP 69
IP+DVD+ + E+ A GV P+ L+ V Q A ++GI D+KI +D P
Sbjct 34 IPEDVDINELVHELDADGVYIGSLADQYPSMEEQLIAVTQKAEEQGIGDMKIAFIDQTPA 93
Query 70 NDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTG-NPVQSAQN 128
+ LRDIA + + VLV +P ST R TLEA + H + V+++
Sbjct 94 HTADLRDIAQELLNNTGADLVLVRNPMSGAVVSTDVSRATLEAAQYHFLADPDYVRASNF 153
Query 129 FVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGR 166
FV +S+ PW+ + IV+LIG++ A G R R
Sbjct 154 FVDYVSSSSIPWALVGIVVLIGLVLVAAGTWFFARRSR 191
>gi|333919584|ref|YP_004493165.1| hypothetical protein AS9A_1916 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481805|gb|AEF40365.1| hypothetical protein AS9A_1916 [Amycolicicoccus subflavus DQS3-9A1]
Length=183
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/148 (36%), Positives = 73/148 (50%), Gaps = 1/148 (0%)
Query 18 PQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDI 77
P V++ V A +A V AP ++V A ++GIDLKIV +NP RD+
Sbjct 24 PPAVNLDDVLAGLAEDNVYAPDGEVDTFRDIVAEAAEQGIDLKIVAFPYNPWYGGGPRDL 83
Query 78 ATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPE 137
A +GA T+LVL PN + SYS R TLE + +A F+ E++
Sbjct 84 ANDIGA-ADGGTILVLGPNVIASYSDSISRFTLEGAQMEIARREHPDAAAMFLDEITASG 142
Query 138 FPWSALTIVLLIGVLAAAVGARLMQLRG 165
FPW+ LT+ +L V+A V R RG
Sbjct 143 FPWTGLTVAVLFLVVAVVVATRWWSRRG 170
>gi|262202329|ref|YP_003273537.1| hypothetical protein Gbro_2402 [Gordonia bronchialis DSM 43247]
gi|262085676|gb|ACY21644.1| hypothetical protein Gbro_2402 [Gordonia bronchialis DSM 43247]
Length=208
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/123 (35%), Positives = 63/123 (52%), Gaps = 3/123 (2%)
Query 20 DVDMTAVKAEVAALGVSAP--PAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDI 77
+VDM + ++AA V+AP P P LL VV A+ +G D+ +V+L PN RDI
Sbjct 28 NVDMKQLATDLAADHVAAPSNPDQVPALLAVVADAKAKGHDISLVVLADQQPNYWIYRDI 87
Query 78 ATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPE 137
AT + D TV+VL PN VGS + R E ++ P +A+ V +++ P
Sbjct 88 ATTLQHDVG-GTVIVLGPNSVGSTGPDFSRFVQEQATNNLDLKQPAVAARQMVDQMTAPT 146
Query 138 FPW 140
W
Sbjct 147 LDW 149
>gi|343927992|ref|ZP_08767458.1| hypothetical protein GOALK_099_01240 [Gordonia alkanivorans NBRC
16433]
gi|343762215|dbj|GAA14384.1| hypothetical protein GOALK_099_01240 [Gordonia alkanivorans NBRC
16433]
Length=209
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/138 (32%), Positives = 75/138 (55%), Gaps = 2/138 (1%)
Query 21 VDMTAVKAEVAALGVS-APPAATPGLLEVVQHARDEGIDLKIVLLDHNPPNDTPLRDIAT 79
VDM + ++A GV+ A P P +LEV+++A+ +G D V++D P + RDIA
Sbjct 25 VDMAQLSRDIADDGVAGATPEQVPAMLEVIEYAKSKGQDFSFVVVDQVQPRFSLYRDIAN 84
Query 80 VVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPEFP 139
+ + TV+VL PN VGS S ++ RV E + +P +A+ V ++
Sbjct 85 QL-QEQVGGTVIVLGPNSVGSSSPEFSRVIQEQATQNLTLTDPPGAARQMVDSMTDSHID 143
Query 140 WSALTIVLLIGVLAAAVG 157
W+ + ++L++ V+ AVG
Sbjct 144 WTVVGLLLILVVVLGAVG 161
>gi|225021410|ref|ZP_03710602.1| hypothetical protein CORMATOL_01429 [Corynebacterium matruchotii
ATCC 33806]
gi|224945792|gb|EEG27001.1| hypothetical protein CORMATOL_01429 [Corynebacterium matruchotii
ATCC 33806]
Length=155
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/154 (31%), Positives = 75/154 (49%), Gaps = 9/154 (5%)
Query 17 IPQDVDMTAVKAEVAALGVSAPP---AATPGLLEVVQHARDEGI-DLKIVLLDHNPPNDT 72
+P+ V+++ + ++ GV+ A L+ +A G+ +L I +LD P
Sbjct 2 VPESVNLSDLSEQLLVDGVALERDNNALHQDLMAAKDYAASRGVGELGIAVLDAPPARLA 61
Query 73 PLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQ--SAQNFV 130
+RDIA + D ATV+V P ST+Y R LE + S P + F
Sbjct 62 DMRDIAQELARDTGIATVVVKVPGTAAVVSTRYSRADLEKAQ-QSLVVQPDYGVGVRGFA 120
Query 131 HELSTPEFPWSALTIVLLIGVLAAAVGARLMQLR 164
L+ P P L+ +LL+ V+AAAVGA LM+++
Sbjct 121 DSLAHP-LPVGLLSTLLLV-VIAAAVGASLMRIK 152
>gi|300858497|ref|YP_003783480.1| hypothetical protein cpfrc_01080 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685951|gb|ADK28873.1| hypothetical protein cpfrc_01080 [Corynebacterium pseudotuberculosis
FRC41]
gi|302330765|gb|ADL20959.1| 1-deoxy-D-xylulose-5-phosphate synthase [Corynebacterium pseudotuberculosis
1002]
gi|308276449|gb|ADO26348.1| Putative 1-deoxy-D-xylulose-5-phosphate synthase [Corynebacterium
pseudotuberculosis I19]
gi|341824889|gb|AEK92410.1| 1-deoxy-D-xylulose-5-phosphate synthase [Corynebacterium pseudotuberculosis
PAT10]
Length=195
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/156 (31%), Positives = 70/156 (45%), Gaps = 13/156 (8%)
Query 17 IPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARD--EGIDLKIVLLDHNPPNDTPL 74
+PQ +D+ A AE+ A GV+ TP EV + D +G L I ++D P + L
Sbjct 43 LPQGIDINAYIAEIEASGVALQ---TPN-AEVHRKLIDATQGHGLAIAVVDQTPEHPADL 98
Query 75 RDIA----TVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNP--VQSAQN 128
RD+A V D +TV V SP S + R LEA + H P V A
Sbjct 99 RDLAQELLNQVSTDGKFSTVAVRSPGTGAVVSKSHSRAELEAWQ-HQFFSEPDYVLGATR 157
Query 129 FVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLR 164
V +L P + + ++ L+ V A +G + Q R
Sbjct 158 LVADLEHDTIPLAPVGLMALLAVSVAIIGTFISQRR 193
>gi|302206207|gb|ADL10549.1| 1-deoxy-D-xylulose-5-phosphate synthase [Corynebacterium pseudotuberculosis
C231]
Length=195
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/156 (31%), Positives = 70/156 (45%), Gaps = 13/156 (8%)
Query 17 IPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARD--EGIDLKIVLLDHNPPNDTPL 74
+PQ +D+ A AE+ A GV+ TP EV + D +G L I ++D P + L
Sbjct 43 LPQGIDINAYIAEIEASGVALQ---TPN-AEVHRKLIDATQGHGLAIAVVDQTPEHPADL 98
Query 75 RDIA----TVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNP--VQSAQN 128
RD+A V D +TV V SP S + R LEA + H P V A
Sbjct 99 RDLAQELLNQVSTDGKFSTVAVRSPGTGAVVSESHSRAELEAWQ-HQFFSEPDYVLGATR 157
Query 129 FVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLR 164
V +L P + + ++ L+ V A +G + Q R
Sbjct 158 LVADLEHDTIPLAPVGLMALLAVSVAIIGTFISQRR 193
>gi|294500800|ref|YP_003564500.1| cytochrome c oxidase Cu(A) center assembly protein [Bacillus
megaterium QM B1551]
gi|294350737|gb|ADE71066.1| cytochrome c oxidase Cu(A) center assembly protein [Bacillus
megaterium QM B1551]
Length=192
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/88 (32%), Positives = 45/88 (52%), Gaps = 11/88 (12%)
Query 15 SYIPQD---VDMTAVKAEVAALGV------SAPPAATPGLLEVVQHARDEGIDLKIVLLD 65
SY+ QD V ++ +K V + P T + ++ + A+DEG+D++ V
Sbjct 38 SYVNQDQKKVGISQLKGNVWVANFIFTSCETVCPPMTAHMAKLQKMAKDEGLDVRFVSFS 97
Query 66 HNPPNDTPL--RDIATVVGADYSDATVL 91
+P DTPL +D AT GAD+S+ L
Sbjct 98 VDPEVDTPLKMKDYATKFGADFSNWDFL 125
>gi|336325604|ref|YP_004605570.1| hypothetical protein CRES_1050 [Corynebacterium resistens DSM
45100]
gi|336101586|gb|AEI09406.1| hypothetical protein CRES_1050 [Corynebacterium resistens DSM
45100]
Length=167
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/155 (24%), Positives = 72/155 (47%), Gaps = 14/155 (9%)
Query 17 IPQDVDMTAVKAEVAALGVSAPPA----------ATPGLLEVVQH--ARDEGIDLKIVLL 64
IP +VD+ ++ A ++ + P G+++ +H A+++ LK+VL+
Sbjct 2 IPSNVDIDSIVASLSDAAIYVDPKFPRANKISQRELEGIIDNAEHGEAKEKFGKLKVVLI 61
Query 65 DHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQ 124
+ + T +RD+A + + + TV+V SP+ + + + R LE+ + G
Sbjct 62 EQSLSG-TGMRDVAQRIKDESNANTVIVRSPSGTAAVADGFSRYNLESNSHLASKGGAAT 120
Query 125 SAQNFVHELSTPEFPWSALTIVLLIG-VLAAAVGA 158
Q ++ L P + + I LI VL+ AV A
Sbjct 121 GLQTYIQALDHHRAPEATVNIGGLIALVLSVAVAA 155
>gi|295706145|ref|YP_003599220.1| cytochrome c oxidase Cu(A) center assembly protein [Bacillus
megaterium DSM 319]
gi|294803804|gb|ADF40870.1| cytochrome c oxidase Cu(A) center assembly protein [Bacillus
megaterium DSM 319]
Length=192
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/88 (31%), Positives = 45/88 (52%), Gaps = 11/88 (12%)
Query 15 SYIPQD---VDMTAVKAEVAALGV------SAPPAATPGLLEVVQHARDEGIDLKIVLLD 65
SY+ QD V ++ +K V + P T + ++ + A+DEG+D++ V
Sbjct 38 SYVNQDQKKVGLSQLKGNVWVANFIFTSCETVCPPMTAHMAKLQKMAKDEGLDVRFVSFS 97
Query 66 HNPPNDTP--LRDIATVVGADYSDATVL 91
+P DTP ++D AT GAD+S+ L
Sbjct 98 VDPEVDTPSKMKDYATKFGADFSNWDFL 125
>gi|213965579|ref|ZP_03393773.1| hypothetical protein CORAM0001_0961 [Corynebacterium amycolatum
SK46]
gi|213951738|gb|EEB63126.1| hypothetical protein CORAM0001_0961 [Corynebacterium amycolatum
SK46]
Length=169
Score = 40.8 bits (94), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/154 (27%), Positives = 65/154 (43%), Gaps = 14/154 (9%)
Query 26 VKAEVAALGVSAPPAATPGLLEVVQ----HARDEGI-DLKIVLLDHN---PPNDTPLRDI 77
V+ VA L P L E VQ A + G+ + I+ LD P + DI
Sbjct 14 VEKAVAQLRTDNIVTTNPKLREAVQPIVDDAANRGVPNFHIIYLDTEKIYPVAEQKNTDI 73
Query 78 ATVVG--ADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQ---SAQNFVHE 132
+ AD T +V +P V + S+ +PR +E DH+ P ++HE
Sbjct 74 FSFARQVADQVGGTTVVRTPGNVATASSDFPRAAIERA-DHAMMETPRDYPAGLDAYLHE 132
Query 133 LSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGR 166
L+ PW+ +++ + ++A VG LR R
Sbjct 133 LTNYVVPWTLYSLIAGVVIVALFVGLTFYWLRTR 166
>gi|345443039|gb|AEN88056.1| Cytochrome c oxidase Cu(A) center assembly protein [Bacillus
megaterium WSH-002]
Length=176
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/88 (31%), Positives = 45/88 (52%), Gaps = 11/88 (12%)
Query 15 SYIPQD---VDMTAVKAEVAALGV------SAPPAATPGLLEVVQHARDEGIDLKIVLLD 65
SY+ QD V ++ +K V + P T + ++ + A+DEG+D++ V
Sbjct 22 SYVNQDQKKVGLSQLKGNVWIANFIFTSCETVCPPMTAHMAKLQKMAKDEGLDVRFVSFS 81
Query 66 HNPPNDTP--LRDIATVVGADYSDATVL 91
+P DTP ++D AT GAD+S+ L
Sbjct 82 VDPEVDTPPKMKDYATKFGADFSNWDFL 109
>gi|172040702|ref|YP_001800416.1| hypothetical protein cur_1022 [Corynebacterium urealyticum DSM
7109]
gi|171852006|emb|CAQ04982.1| hypothetical protein cu1022 [Corynebacterium urealyticum DSM
7109]
Length=176
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/93 (32%), Positives = 46/93 (50%), Gaps = 2/93 (2%)
Query 75 RDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELS 134
RD+A ++ T LV++P + S S YPR TLE + V + +NF+ +
Sbjct 85 RDLAQILHDATCSDTTLVMTPKWGTSVSDIYPRFTLERNHEKLHGNLNVDAVENFLSAID 144
Query 135 TPEFPWSALTIVLL-IGVLAAAVGARLMQLRGR 166
P +A++ LL I +L+ A+ A Q R R
Sbjct 145 DTATPTTAVSNGLLGIIILSIAITALFAQ-RSR 176
>gi|337290757|ref|YP_004629778.1| hypothetical protein CULC22_01149 [Corynebacterium ulcerans BR-AD22]
gi|334699063|gb|AEG83859.1| hypothetical protein CULC22_01149 [Corynebacterium ulcerans BR-AD22]
Length=154
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 48/162 (30%), Positives = 75/162 (47%), Gaps = 25/162 (15%)
Query 17 IPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARD--EGIDLKIVLLDHNPPNDTPL 74
+PQ +D+ A +AE+ + GV+ TP EV + D +G L I ++D P + L
Sbjct 2 LPQGIDVNAYEAELKSSGVALQ---TPN-AEVREKLIDATQGRGLAIAVVDQTPEHPADL 57
Query 75 RDIA----TVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNP------VQ 124
RD+A + AD +TV V SP+ S + R LEA + H P +
Sbjct 58 RDLAQELLNRLSADSEVSTVAVRSPHTGAIVSKGHSRAELEAAQ-HQFFSEPDYVVGVTR 116
Query 125 SAQNFVHELSTPEFP--WSALTIVLLIGVLAAAVGARLMQLR 164
A + HE + P P ++++ +V L A VG + Q R
Sbjct 117 LAMDLEHE-TIPLLPIGFASMAVVFL-----AIVGTFISQRR 152
>gi|334696870|gb|AEG81667.1| hypothetical protein CULC809_01134 [Corynebacterium ulcerans
809]
Length=154
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/106 (33%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query 17 IPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARD--EGIDLKIVLLDHNPPNDTPL 74
+PQ +D+ A +AE+ + GV+ TP EV + D +G L I ++D P + L
Sbjct 2 LPQGIDVNAYEAELKSSGVA---LQTPN-AEVREKLIDATQGQGLAIAVVDQTPEHPADL 57
Query 75 RDIA----TVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDH 116
RD+A + AD +TV V SP+ S + R LEA ++
Sbjct 58 RDLAQELLNRLSADSEVSTVAVRSPHTGAIVSKGHSRAELEAAQNQ 103
>gi|333030394|ref|ZP_08458455.1| Glycoside hydrolase 97 [Bacteroides coprosuis DSM 18011]
gi|332740991|gb|EGJ71473.1| Glycoside hydrolase 97 [Bacteroides coprosuis DSM 18011]
Length=654
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 19/63 (31%), Positives = 31/63 (50%), Gaps = 0/63 (0%)
Query 83 ADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSAQNFVHELSTPEFPWSA 142
A+ SD + + + + +P+V LE GED ++ ++ A+ H ST EFPW
Sbjct 207 ANVSDYPRMFVKGDGKNGVESIFPKVPLEFGEDGDRSLKILKEAEYIAHTSSTREFPWRY 266
Query 143 LTI 145
I
Sbjct 267 FVI 269
>gi|227549257|ref|ZP_03979306.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078711|gb|EEI16674.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
DSM 44291]
Length=159
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/160 (24%), Positives = 72/160 (45%), Gaps = 11/160 (6%)
Query 16 YIPQDVDMTAVKAEV----AALGVSAP--PAATPGLLEVVQHARDEGID-LKIVLLDHNP 68
IP D DM ++++++ A G P P L + + +A ID + +V+L+ P
Sbjct 1 MIPADTDMESLRSQLLDDGIAFGTDNPVNPGLEAALHDALSNADTTAIDPVGVVVLETTP 60
Query 69 PNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTGNPVQSA-- 126
LRD+A + + TV++ +P+ + S R +E + + P A
Sbjct 61 LQPADLRDVAQDLVLNTPFETVIIRTPHAASAVSEHLTRHQIETAQ-RAMVAEPDYPAGL 119
Query 127 QNFVHELSTPEFPWSALTIVLLIGVLAAAVGARLMQLRGR 166
+ F+ + + W+ + + ++IG LA G +Q R +
Sbjct 120 RLFIDTAQSTSWNWALIALAVIIG-LAVVAGISALQARVK 158
>gi|320586715|gb|EFW99385.1| enoyl-hydratase isomerase family protein [Grosmannia clavigera
kw1407]
Length=394
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (33%), Positives = 29/61 (48%), Gaps = 4/61 (6%)
Query 1 MTGPYFP----QTIPFLPSYIPQDVDMTAVKAEVAALGVSAPPAATPGLLEVVQHARDEG 56
+T FP + + F+ +P + AV E A L S P A G E++QHARD
Sbjct 296 LTARVFPAAEAEAVGFVSRVLPSKAAVVAVALETATLIASKSPVAVQGTKELLQHARDHS 355
Query 57 I 57
+
Sbjct 356 V 356
>gi|227833061|ref|YP_002834768.1| hypothetical protein cauri_1237 [Corynebacterium aurimucosum
ATCC 700975]
gi|262182450|ref|ZP_06041871.1| hypothetical protein CaurA7_00519 [Corynebacterium aurimucosum
ATCC 700975]
gi|227454077|gb|ACP32830.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=158
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/96 (33%), Positives = 43/96 (45%), Gaps = 2/96 (2%)
Query 61 IVLLDHNPPNDTPLRDIATVVGADYSDATVLVLSPNYVGSYSTQYPRVTLEAGEDHSKTG 120
I ++D P LRD+AT + TV++ +P V + S Y R TLEA ED G
Sbjct 47 IAVVDVFPEKIPDLRDLATTLQEQTGLDTVILQAPMKVSAVSNSYDRATLEAAEDSLPAG 106
Query 121 -NPVQSAQNFVHELSTPEFPWSALTIVLLIGVLAAA 155
+ V +F PW L + + GV A A
Sbjct 107 LDQVTLLNDFYAVGDQFSVPW-LLILTVAFGVAAVA 141
Lambda K H
0.315 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 177363380150
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40