BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1489
Length=118
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840950|ref|NP_335987.1| hypothetical protein MT1534 [Mycoba... 226 1e-57
gi|289745240|ref|ZP_06504618.1| conserved hypothetical protein [... 223 8e-57
gi|289447092|ref|ZP_06436836.1| conserved hypothetical protein [... 222 1e-56
gi|297634055|ref|ZP_06951835.1| hypothetical protein MtubK4_0802... 218 2e-55
gi|298524998|ref|ZP_07012407.1| conserved hypothetical protein [... 216 1e-54
gi|183982308|ref|YP_001850599.1| hypothetical protein MMAR_2295 ... 186 9e-46
gi|240172234|ref|ZP_04750893.1| hypothetical protein MkanA1_2316... 176 9e-43
gi|118617158|ref|YP_905490.1| hypothetical protein MUL_1498 [Myc... 172 1e-41
gi|296170651|ref|ZP_06852226.1| conserved hypothetical protein [... 165 3e-39
gi|342858780|ref|ZP_08715435.1| hypothetical protein MCOL_07881 ... 161 4e-38
gi|41407313|ref|NP_960149.1| hypothetical protein MAP1215 [Mycob... 157 7e-37
gi|254819557|ref|ZP_05224558.1| hypothetical protein MintA_06519... 154 6e-36
gi|333989005|ref|YP_004521619.1| hypothetical protein JDM601_036... 130 6e-29
gi|120403744|ref|YP_953573.1| hypothetical protein Mvan_2760 [My... 115 2e-24
gi|126435715|ref|YP_001071406.1| hypothetical protein Mjls_3136 ... 112 1e-23
gi|108800091|ref|YP_640288.1| hypothetical protein Mmcs_3125 [My... 112 1e-23
gi|145224236|ref|YP_001134914.1| hypothetical protein Mflv_3652 ... 109 1e-22
gi|169629799|ref|YP_001703448.1| hypothetical protein MAB_2715c ... 106 1e-21
gi|118473152|ref|YP_887471.1| hypothetical protein MSMEG_3156 [M... 105 2e-21
gi|333990866|ref|YP_004523480.1| hypothetical protein JDM601_222... 103 1e-20
gi|326381415|ref|ZP_08203109.1| hypothetical protein SCNU_00650 ... 98.2 3e-19
gi|169629798|ref|YP_001703447.1| hypothetical protein MAB_2714c ... 96.3 2e-18
gi|169629360|ref|YP_001703009.1| hypothetical protein MAB_2274c ... 93.2 1e-17
gi|296141084|ref|YP_003648327.1| hypothetical protein Tpau_3404 ... 86.3 1e-15
gi|317507215|ref|ZP_07964966.1| hypothetical protein HMPREF9336_... 83.6 8e-15
gi|326332522|ref|ZP_08198795.1| FtsQ [Nocardioidaceae bacterium ... 71.2 4e-11
gi|302521972|ref|ZP_07274314.1| conserved hypothetical protein [... 66.6 1e-09
gi|295836461|ref|ZP_06823394.1| membrane protein [Streptomyces s... 65.5 3e-09
gi|333024366|ref|ZP_08452430.1| hypothetical protein STTU_1870 [... 65.1 3e-09
gi|297192449|ref|ZP_06909847.1| integral membrane protein [Strep... 41.2 0.058
gi|296119588|ref|ZP_06838146.1| putative membrane protein [Coryn... 40.0 0.12
gi|254775271|ref|ZP_05216787.1| hypothetical protein MaviaA2_114... 39.3 0.19
gi|304407947|ref|ZP_07389597.1| DoxX family protein [Paenibacill... 39.3 0.22
gi|260905692|ref|ZP_05914014.1| hypothetical protein BlinB_10202... 38.5 0.34
gi|68535081|ref|YP_249786.1| hypothetical protein jk0019 [Coryne... 38.1 0.46
gi|41407731|ref|NP_960567.1| hypothetical protein MAP1633c [Myco... 37.7 0.50
gi|336457391|gb|EGO36400.1| hypothetical protein MAPs_22560 [Myc... 37.7 0.53
gi|227831966|ref|YP_002833673.1| hypothetical protein cauri_0136... 37.0 1.1
gi|119716414|ref|YP_923379.1| integral membrane protein [Nocardi... 36.2 1.5
gi|294056263|ref|YP_003549921.1| hypothetical protein Caka_2736 ... 36.2 1.8
gi|251795732|ref|YP_003010463.1| DoxX family protein [Paenibacil... 36.2 1.9
gi|145221784|ref|YP_001132462.1| hypothetical protein Mflv_1192 ... 35.8 2.1
gi|68535636|ref|YP_250341.1| hypothetical protein jk0564 [Coryne... 35.0 3.2
gi|227502546|ref|ZP_03932595.1| conserved hypothetical protein [... 35.0 3.6
gi|296165111|ref|ZP_06847662.1| integral membrane protein [Mycob... 34.3 5.5
gi|225020798|ref|ZP_03709990.1| hypothetical protein CORMATOL_00... 33.9 7.3
gi|294056262|ref|YP_003549920.1| hypothetical protein Caka_2735 ... 33.9 8.4
>gi|15840950|ref|NP_335987.1| hypothetical protein MT1534 [Mycobacterium tuberculosis CDC1551]
gi|31792684|ref|NP_855177.1| hypothetical protein Mb1525 [Mycobacterium bovis AF2122/97]
gi|57116875|ref|YP_177645.1| hypothetical protein Rv1489 [Mycobacterium tuberculosis H37Rv]
65 more sequence titles
Length=118
Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/118 (100%), Positives = 118/118 (100%), Gaps = 0/118 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL
Sbjct 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT
Sbjct 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
>gi|289745240|ref|ZP_06504618.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289757601|ref|ZP_06516979.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294993233|ref|ZP_06798924.1| hypothetical protein Mtub2_01677 [Mycobacterium tuberculosis
210]
gi|289685768|gb|EFD53256.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289713165|gb|EFD77177.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326903115|gb|EGE50048.1| hypothetical protein TBPG_00979 [Mycobacterium tuberculosis W-148]
Length=118
Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 117/118 (99%), Positives = 117/118 (99%), Gaps = 0/118 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVV AASAVGLL
Sbjct 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVTAASAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT
Sbjct 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
>gi|289447092|ref|ZP_06436836.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289420050|gb|EFD17251.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=118
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/118 (99%), Positives = 117/118 (99%), Gaps = 0/118 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MSGLTSPKTYAVLAALQAGDAVACAIPLP I+RLLDDLDVPVSVRPVLPVVKAASAVGLL
Sbjct 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPAISRLLDDLDVPVSVRPVLPVVKAASAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT
Sbjct 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
>gi|297634055|ref|ZP_06951835.1| hypothetical protein MtubK4_08027 [Mycobacterium tuberculosis
KZN 4207]
Length=115
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/115 (99%), Positives = 115/115 (100%), Gaps = 0/115 (0%)
Query 4 LTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVT 63
+TSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVT
Sbjct 1 MTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVT 60
Query 64 RFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
RFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT
Sbjct 61 RFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 115
>gi|298524998|ref|ZP_07012407.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298494792|gb|EFI30086.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|339294464|gb|AEJ46575.1| hypothetical protein CCDC5079_1385 [Mycobacterium tuberculosis
CCDC5079]
gi|339298104|gb|AEJ50214.1| hypothetical protein CCDC5180_1377 [Mycobacterium tuberculosis
CCDC5180]
Length=115
Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/115 (99%), Positives = 114/115 (99%), Gaps = 0/115 (0%)
Query 4 LTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVT 63
+TSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVV AASAVGLLSVT
Sbjct 1 MTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVTAASAVGLLSVT 60
Query 64 RFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
RFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT
Sbjct 61 RFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 115
>gi|183982308|ref|YP_001850599.1| hypothetical protein MMAR_2295 [Mycobacterium marinum M]
gi|183175634|gb|ACC40744.1| conserved membrane protein [Mycobacterium marinum M]
Length=118
Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 94/117 (81%), Positives = 105/117 (90%), Gaps = 0/117 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS +TSPK YAVL ALQAGDAVACAIPLPPIA++LDDL VP +VRPV PVVKAA+AVGL
Sbjct 1 MSVVTSPKAYAVLGALQAGDAVACAIPLPPIAKILDDLGVPEAVRPVFPVVKAAAAVGLF 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPER 117
SVTRFPALARLTTAMLTLYF+LAV AHVRVRD++VN IPAASFL FA+MT KGP++
Sbjct 61 SVTRFPALARLTTAMLTLYFMLAVAAHVRVRDKIVNIIPAASFLATFAVMTVKGPDQ 117
>gi|240172234|ref|ZP_04750893.1| hypothetical protein MkanA1_23164 [Mycobacterium kansasii ATCC
12478]
Length=118
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/117 (79%), Positives = 99/117 (85%), Gaps = 0/117 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
M LTSPKTYA LA QAGDAVACAIPL PI +LLDDL VP VRPVLPV KAA+AVGLL
Sbjct 1 MGILTSPKTYAALAVFQAGDAVACAIPLAPIEKLLDDLGVPADVRPVLPVAKAAAAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPER 117
S TRFPALARLTTAMLT+YF+LA+GAHVR RD V AIPAA FL LFA+MTAKGP+R
Sbjct 61 SATRFPALARLTTAMLTVYFVLALGAHVRARDFSVTAIPAAMFLALFAVMTAKGPDR 117
>gi|118617158|ref|YP_905490.1| hypothetical protein MUL_1498 [Mycobacterium ulcerans Agy99]
gi|118569268|gb|ABL04019.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=114
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/112 (77%), Positives = 97/112 (87%), Gaps = 0/112 (0%)
Query 6 SPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRF 65
SPK Y VL A QAGDAVACAIPLPPIA++LDDL VP +VRPV P+VKAA+AVGL SVTRF
Sbjct 2 SPKAYTVLGAFQAGDAVACAIPLPPIAKILDDLGVPEAVRPVFPLVKAAAAVGLFSVTRF 61
Query 66 PALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPER 117
PALARLTTAMLTLYF+LAV AHVRVRD++VN IPAAS L FA+MT GP++
Sbjct 62 PALARLTTAMLTLYFVLAVAAHVRVRDKIVNIIPAASSLATFAVMTVNGPDQ 113
>gi|296170651|ref|ZP_06852226.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894640|gb|EFG74374.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=118
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/118 (69%), Positives = 99/118 (84%), Gaps = 0/118 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS TSPKTYA L A DAVAC + + PI ++LDD+ +P +VRPVLP VKAA+AVGLL
Sbjct 1 MSVFTSPKTYAALGVFHAVDAVACGVQVAPIKKVLDDVGLPENVRPVLPAVKAAAAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
SVTRFPALAR+TTAMLT+YF+LA+GAH+RVRD+ VNA+PAA FL FA+MTAKGP+R+
Sbjct 61 SVTRFPALARVTTAMLTVYFVLALGAHIRVRDKAVNALPAAVFLATFAVMTAKGPDRS 118
>gi|342858780|ref|ZP_08715435.1| hypothetical protein MCOL_07881 [Mycobacterium colombiense CECT
3035]
gi|342134484|gb|EGT87664.1| hypothetical protein MCOL_07881 [Mycobacterium colombiense CECT
3035]
Length=118
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/117 (71%), Positives = 95/117 (82%), Gaps = 0/117 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS LTSPKTY L A DAVAC + + PI ++LDD+ VP ++RPVLP VKAA+AVGLL
Sbjct 1 MSVLTSPKTYTALGVFHAVDAVACGVQVAPIKKVLDDVGVPENIRPVLPAVKAAAAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPER 117
SV RFPALARLTTAMLTLYF+LAVGAHVRVRD+VVN +PAA FL L A MT KGP++
Sbjct 61 SVHRFPALARLTTAMLTLYFVLAVGAHVRVRDKVVNGLPAALFLALVAGMTIKGPDQ 117
>gi|41407313|ref|NP_960149.1| hypothetical protein MAP1215 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118463375|ref|YP_882471.1| hypothetical protein MAV_3289 [Mycobacterium avium 104]
gi|254775734|ref|ZP_05217250.1| hypothetical protein MaviaA2_13850 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395665|gb|AAS03532.1| hypothetical protein MAP_1215 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118164662|gb|ABK65559.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336458043|gb|EGO37030.1| hypothetical protein MAPs_17410 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=118
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/118 (73%), Positives = 98/118 (84%), Gaps = 0/118 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS LTSPKTYA L A DAVAC + + PI + LD+L VP ++RPVLPVVKAA+AVGLL
Sbjct 1 MSALTSPKTYAALGVFHAVDAVACGVQVAPIRKTLDNLGVPDNIRPVLPVVKAAAAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
SVTRFP LARLTTAMLTLYF+LAVGAHVRVRD+VVN +PAA F+ LFA MT +GPER+
Sbjct 61 SVTRFPGLARLTTAMLTLYFVLAVGAHVRVRDKVVNGLPAALFVALFAAMTVRGPERS 118
>gi|254819557|ref|ZP_05224558.1| hypothetical protein MintA_06519 [Mycobacterium intracellulare
ATCC 13950]
Length=118
Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/117 (72%), Positives = 98/117 (84%), Gaps = 0/117 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS LTSPKTYA L A A DAV C + + PI ++LDD+ +P +VRPVLPVVKAA+AVGLL
Sbjct 1 MSALTSPKTYAALGAFHAVDAVLCGVQVAPIKKVLDDVGLPENVRPVLPVVKAAAAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPER 117
SVTRFP LAR+TTAMLTLYF++AVGAHVRVRD+VVN +PAA FL LFA MT KGP+R
Sbjct 61 SVTRFPVLARVTTAMLTLYFVVAVGAHVRVRDKVVNGLPAALFLALFAAMTVKGPDR 117
>gi|333989005|ref|YP_004521619.1| hypothetical protein JDM601_0365 [Mycobacterium sp. JDM601]
gi|333484973|gb|AEF34365.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=118
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/116 (70%), Positives = 92/116 (80%), Gaps = 0/116 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS LTSPKTY LAA QA DA CAIP+P IA+ LD ++ P +RP+LP+VK ASAVGLL
Sbjct 1 MSALTSPKTYTGLAAFQAADAALCAIPVPYIAKALDTVECPEQIRPILPIVKVASAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPE 116
S RFPALARLTTA LTLYFILAVGAH+RVRD + N +PAASFL LFA MT +GP
Sbjct 61 SARRFPALARLTTAALTLYFILAVGAHIRVRDSIPNTVPAASFLALFAAMTVEGPS 116
>gi|120403744|ref|YP_953573.1| hypothetical protein Mvan_2760 [Mycobacterium vanbaalenii PYR-1]
gi|119956562|gb|ABM13567.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=120
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/118 (62%), Positives = 90/118 (77%), Gaps = 0/118 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS LTS +TYAVLAA+QA DA AC P+PPI + DD+ + +RP++PVVKAASAVGLL
Sbjct 1 MSVLTSKRTYAVLAAVQAADAAACVGPIPPIKKTFDDVGLAEELRPLIPVVKAASAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPERT 118
SV R PALAR TT MLT+YF+LAVG+HVR RD + + A+SFL LF MT +GP+ T
Sbjct 61 SVFRRPALARFTTFMLTVYFVLAVGSHVRARDWSPSLVAASSFLALFGAMTVRGPDVT 118
>gi|126435715|ref|YP_001071406.1| hypothetical protein Mjls_3136 [Mycobacterium sp. JLS]
gi|126235515|gb|ABN98915.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=120
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/116 (59%), Positives = 84/116 (73%), Gaps = 0/116 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS L S +TYA LAA+QA DA AC P+ PI + LDD+ +P +RP++PVVKAASAVGLL
Sbjct 1 MSALGSKRTYAALAAMQAADAAACVKPIAPIKKALDDVGLPEEIRPLIPVVKAASAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPE 116
SV +P LAR+TT MLT+YF+LA G+HVR RD A+S L LF MT KGP+
Sbjct 61 SVFGWPPLARITTFMLTVYFVLAAGSHVRARDWSPGLAAASSLLVLFGAMTVKGPD 116
>gi|108800091|ref|YP_640288.1| hypothetical protein Mmcs_3125 [Mycobacterium sp. MCS]
gi|119869218|ref|YP_939170.1| hypothetical protein Mkms_3186 [Mycobacterium sp. KMS]
gi|108770510|gb|ABG09232.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119695307|gb|ABL92380.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=120
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/116 (59%), Positives = 83/116 (72%), Gaps = 0/116 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS L S +TYA LAA+QA DA AC P+ PI + DD+ +P +RP++PVVKAASAVGLL
Sbjct 1 MSALGSKRTYAALAAMQAADAAACVKPIAPIKKAFDDVGLPEEIRPLIPVVKAASAVGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPE 116
SV +P LARLTT MLT+YF+LA G+HVR RD A+S L LF MT KGP+
Sbjct 61 SVFGWPPLARLTTFMLTVYFVLAAGSHVRARDWSPGLAAASSLLVLFGAMTVKGPD 116
>gi|145224236|ref|YP_001134914.1| hypothetical protein Mflv_3652 [Mycobacterium gilvum PYR-GCK]
gi|315444572|ref|YP_004077451.1| hypothetical protein Mspyr1_29980 [Mycobacterium sp. Spyr1]
gi|145216722|gb|ABP46126.1| hypothetical protein Mflv_3652 [Mycobacterium gilvum PYR-GCK]
gi|315262875|gb|ADT99616.1| hypothetical protein Mspyr1_29980 [Mycobacterium sp. Spyr1]
Length=118
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/116 (57%), Positives = 84/116 (73%), Gaps = 0/116 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS LT+ +TYA LAA+QA DA AC P+ P+A L+ + +P + PVLPVVK ASA+GLL
Sbjct 1 MSALTARRTYAALAAVQAADAAACVGPVAPVAEALEAVGLPKRLWPVLPVVKGASALGLL 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPE 116
SV RFP LAR+TT MLT+YF+LA G+H+R RD + A+SFL L+ MT GPE
Sbjct 61 SVYRFPRLARVTTLMLTVYFMLAAGSHIRARDWSPGLVAASSFLALYGAMTVTGPE 116
>gi|169629799|ref|YP_001703448.1| hypothetical protein MAB_2715c [Mycobacterium abscessus ATCC
19977]
gi|169241766|emb|CAM62794.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=122
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/111 (50%), Positives = 72/111 (65%), Gaps = 0/111 (0%)
Query 4 LTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVT 63
SP+ A+LA+ QA DA C P+P +A+ LDD+ P R + +KAASAVGLL
Sbjct 6 FVSPRVLALLASFQAVDAAICVQPIPYVAKCLDDVRYPQQYRWIFAPIKAASAVGLLGGI 65
Query 64 RFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKG 114
RFP LA+LT MLT+YF LAVGAHVR RD +NA+ A++ L + + KG
Sbjct 66 RFPWLAKLTLLMLTVYFTLAVGAHVRARDIGLNAVSASALLATYGALMVKG 116
>gi|118473152|ref|YP_887471.1| hypothetical protein MSMEG_3156 [Mycobacterium smegmatis str.
MC2 155]
gi|118174439|gb|ABK75335.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=107
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/88 (58%), Positives = 65/88 (74%), Gaps = 0/88 (0%)
Query 29 PPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLTTAMLTLYFILAVGAHV 88
PP+ + DDL VP +R + P +KAASAVGL++ R+PAL RLTTAML LYF+LAVGAHV
Sbjct 18 PPVVKAFDDLGVPHRIRWIFPPIKAASAVGLIAAGRYPALGRLTTAMLALYFLLAVGAHV 77
Query 89 RVRDRVVNAIPAASFLTLFALMTAKGPE 116
R D+ VNAIPAA FL + +T + P+
Sbjct 78 RAHDKPVNAIPAAGFLATYLALTLRHPQ 105
>gi|333990866|ref|YP_004523480.1| hypothetical protein JDM601_2226 [Mycobacterium sp. JDM601]
gi|333486834|gb|AEF36226.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=127
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/116 (55%), Positives = 81/116 (70%), Gaps = 0/116 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS LT+ TYA LAA AGDAVA AIP+P +A+ +D + +P VR +PV KAA+A+GL
Sbjct 1 MSALTARPTYAALAAFLAGDAVASAIPVPYVAKNMDAMRIPPEVRWAVPVAKAAAALGLG 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPE 116
SV RFP +AR TTAMLT YF A+G + VR+R N +PA L +FA+MT +GP
Sbjct 61 SVFRFPGVARATTAMLTAYFAGALGIQLWVRNRAANIVPAVLLLAVFAVMTVQGPH 116
>gi|326381415|ref|ZP_08203109.1| hypothetical protein SCNU_00650 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199662|gb|EGD56842.1| hypothetical protein SCNU_00650 [Gordonia neofelifaecis NRRL
B-59395]
Length=136
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/111 (51%), Positives = 72/111 (65%), Gaps = 0/111 (0%)
Query 6 SPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRF 65
P Y + AA Q+ DA+AC P+P IAR LDD+ PV R + PV+K+ASA GL + RF
Sbjct 10 DPLVYRLAAAGQSADAIACIGPIPYIARCLDDVGFPVEQRWIFPVIKSASAAGLAAAPRF 69
Query 66 PALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPE 116
P LAR T MLT+YF LAVGAH+R +D +N A+S L +A + A GP
Sbjct 70 PLLARFTAVMLTVYFCLAVGAHIRAKDLRLNFAAASSMLAFYATLAATGPR 120
>gi|169629798|ref|YP_001703447.1| hypothetical protein MAB_2714c [Mycobacterium abscessus ATCC
19977]
gi|169241765|emb|CAM62793.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=125
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/88 (54%), Positives = 64/88 (73%), Gaps = 0/88 (0%)
Query 27 PLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLTTAMLTLYFILAVGA 86
P+ P+ L+ + +P + +LPVVK ASA GL+ R+ AL RLTT MLT+YF LAVGA
Sbjct 29 PIKPVKDSLEKVGLPQDIWWLLPVVKTASAAGLIGGIRWSALGRLTTFMLTVYFTLAVGA 88
Query 87 HVRVRDRVVNAIPAASFLTLFALMTAKG 114
H+R D+++NA+PA S L LFA++TAKG
Sbjct 89 HLRAHDKMLNALPATSLLALFAVLTAKG 116
>gi|169629360|ref|YP_001703009.1| hypothetical protein MAB_2274c [Mycobacterium abscessus ATCC
19977]
gi|169241327|emb|CAM62355.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=141
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 0/100 (0%)
Query 12 VLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARL 71
+LA QA DA C P+ + + LD + P R V PVVK ASA GLL TR PALA+L
Sbjct 13 LLATFQAIDAALCVQPIDYVTKCLDTVRFPQQGRWVFPVVKGASAAGLLLGTRVPALAKL 72
Query 72 TTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMT 111
T MLT YF LAVGAHV+ RD NA+ A+S L ++A ++
Sbjct 73 TLVMLTFYFSLAVGAHVKARDLSFNALAASSLLAVYAALS 112
>gi|296141084|ref|YP_003648327.1| hypothetical protein Tpau_3404 [Tsukamurella paurometabola DSM
20162]
gi|296029218|gb|ADG79988.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=126
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/114 (53%), Positives = 74/114 (65%), Gaps = 0/114 (0%)
Query 4 LTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVT 63
L P+ Y + AALQA DA C P+P + R LDD+ P R P+VKAASAVGL +
Sbjct 8 LRDPRLYRLAAALQATDAAICVPPIPYVRRCLDDVHWPQEHRWFFPLVKAASAVGLAAAP 67
Query 64 RFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKGPER 117
RFP L R+TT MLTLYF +AVGAH+R RD N + A+S LT +A + A GP R
Sbjct 68 RFPRLGRVTTTMLTLYFSVAVGAHLRARDLRFNFVGASSLLTFYAALAASGPPR 121
>gi|317507215|ref|ZP_07964966.1| hypothetical protein HMPREF9336_01338 [Segniliparus rugosus ATCC
BAA-974]
gi|316254488|gb|EFV13807.1| hypothetical protein HMPREF9336_01338 [Segniliparus rugosus ATCC
BAA-974]
Length=126
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/114 (54%), Positives = 76/114 (67%), Gaps = 0/114 (0%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS SPKT A AALQA DAVACAIP+ IA D ++VPV R + PVVK ASA GL
Sbjct 1 MSRKPSPKTLAAFAALQAADAVACAIPVKAIAEAFDRVEVPVKYRWLFPVVKGASAAGLA 60
Query 61 SVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAKG 114
+FP +ARLT A+LT+YF+ AVG+HVRVRD + N+ AA L + + A+
Sbjct 61 LGAKFPPVARLTLALLTVYFVAAVGSHVRVRDSIPNSAAAAVLLGTYGYLAAQS 114
>gi|326332522|ref|ZP_08198795.1| FtsQ [Nocardioidaceae bacterium Broad-1]
gi|325949712|gb|EGD41779.1| FtsQ [Nocardioidaceae bacterium Broad-1]
Length=248
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (47%), Positives = 52/80 (65%), Gaps = 0/80 (0%)
Query 13 LAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLT 72
LA +Q GDAV C P+ IAR D+ +P ++ PV+P VK A+ VGL++ P + LT
Sbjct 143 LAVIQIGDAVMCFKPVGFIARCFTDVGLPRALWPVMPWVKVAATVGLVAGLWVPYVGALT 202
Query 73 TAMLTLYFILAVGAHVRVRD 92
+A L +YF+ AV AH+R RD
Sbjct 203 SAALIVYFVCAVTAHIRARD 222
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/59 (34%), Positives = 31/59 (53%), Gaps = 6/59 (10%)
Query 35 LDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLTTAMLTLYFILAVGAHVRVRDR 93
++ L P+ V A +GLL PA+ + A ++F+LA+GAH+RV DR
Sbjct 41 MEWLSFPIGVS------YALGFLGLLVGAAVPAVGIVAAAGFVVFFVLAIGAHLRVGDR 93
>gi|302521972|ref|ZP_07274314.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|318059394|ref|ZP_07978117.1| hypothetical protein SSA3_15706 [Streptomyces sp. SA3_actG]
gi|318079001|ref|ZP_07986333.1| hypothetical protein SSA3_20374 [Streptomyces sp. SA3_actF]
gi|302430867|gb|EFL02683.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length=116
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/86 (49%), Positives = 53/86 (62%), Gaps = 0/86 (0%)
Query 17 QAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLTTAML 76
Q DAV P+ + L D+ +P +LPVVKAASA GL++ TR+ LA LT+A L
Sbjct 15 QLVDAVLSLRPVGFVRDCLTDVGLPRRWWRLLPVVKAASAAGLVAGTRWHWLAVLTSAAL 74
Query 77 TLYFILAVGAHVRVRDRVVNAIPAAS 102
LYF+LA+GAHVR RD N AS
Sbjct 75 VLYFLLAIGAHVRARDFGRNLFLNAS 100
>gi|295836461|ref|ZP_06823394.1| membrane protein [Streptomyces sp. SPB74]
gi|295826046|gb|EFG64640.1| membrane protein [Streptomyces sp. SPB74]
Length=116
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/91 (49%), Positives = 54/91 (60%), Gaps = 1/91 (1%)
Query 19 GDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLTTAMLTL 78
GDA C P + L D+ +P P+LPVVK ASA GLL+ R LA LT+A L L
Sbjct 17 GDAALCPRPAGFVRDCLTDVGLPRRWWPLLPVVKTASAAGLLAGIRRQPLAVLTSAALVL 76
Query 79 YFILAVGAHVRVRDRVVNA-IPAASFLTLFA 108
YF+LA+GAHVR D N + A+ LTL A
Sbjct 77 YFLLALGAHVRAGDFGRNLFLNASGMLTLCA 107
>gi|333024366|ref|ZP_08452430.1| hypothetical protein STTU_1870 [Streptomyces sp. Tu6071]
gi|332744218|gb|EGJ74659.1| hypothetical protein STTU_1870 [Streptomyces sp. Tu6071]
Length=116
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (65%), Gaps = 0/76 (0%)
Query 17 QAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLTTAML 76
Q DAV P+ + L D+ +P +LPVVKAASA GL++ R+ LA LT+A L
Sbjct 15 QLVDAVLSLRPVGFVRDCLSDVGLPRRWWRLLPVVKAASAAGLVAGVRWHWLAVLTSAAL 74
Query 77 TLYFILAVGAHVRVRD 92
LYF+LA+GAHVR RD
Sbjct 75 VLYFLLAIGAHVRARD 90
>gi|297192449|ref|ZP_06909847.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197717986|gb|EDY61894.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length=116
Score = 41.2 bits (95), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/88 (39%), Positives = 43/88 (49%), Gaps = 1/88 (1%)
Query 5 TSPKTYAVLAALQAG-DAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVT 63
T+ VLAA G AV+ + + R + D VP++ P L KAA AVGLL+
Sbjct 4 TAQAVVTVLAAAMVGFSAVSVFLRTQWVVRPMADYGVPMTWLPWLGTAKAAGAVGLLAGL 63
Query 64 RFPALARLTTAMLTLYFILAVGAHVRVR 91
P + L A L LYF AV VR R
Sbjct 64 FVPVVGVLAGAGLVLYFTGAVATVVRAR 91
>gi|296119588|ref|ZP_06838146.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
gi|295967471|gb|EFG80738.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
Length=119
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/81 (31%), Positives = 41/81 (51%), Gaps = 0/81 (0%)
Query 11 AVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALAR 70
A+LA + GD +P+ I L+ ++ P L V+K+ + VGL++ P +A
Sbjct 12 ALLAIVLTGDIAMSILPMKFIRDCLEGVNFPREWWWTLLVIKSLTVVGLVAGIWIPGIAL 71
Query 71 LTTAMLTLYFILAVGAHVRVR 91
T + +YF A AH+R R
Sbjct 72 AATIGVIVYFTCASYAHIRER 92
>gi|254775271|ref|ZP_05216787.1| hypothetical protein MaviaA2_11456 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=120
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/72 (39%), Positives = 38/72 (53%), Gaps = 1/72 (1%)
Query 21 AVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGL-LSVTRFPALARLTTAMLTLY 79
A+A +P + + ++ VP + P L +K A AVGL L + P L L L+
Sbjct 20 AIADYVPAGFVLKNSAEVHVPAAALPYLATLKLAGAVGLTLGLVALPRLGVAAGIGLVLF 79
Query 80 FILAVGAHVRVR 91
FI AVGAHVR R
Sbjct 80 FIGAVGAHVRAR 91
>gi|304407947|ref|ZP_07389597.1| DoxX family protein [Paenibacillus curdlanolyticus YK9]
gi|304342966|gb|EFM08810.1| DoxX family protein [Paenibacillus curdlanolyticus YK9]
Length=114
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/67 (32%), Positives = 35/67 (53%), Gaps = 0/67 (0%)
Query 34 LLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLTTAMLTLYFILAVGAHVRVRDR 93
L +++ +P R V V+ A AVGL+ +P +A T M+ + +LA +H RV+
Sbjct 33 LFEEIKLPQWFRIVTGYVQIAGAVGLVIGYWYPEVAAWTGVMIGIMMLLACLSHFRVKHP 92
Query 94 VVNAIPA 100
+ PA
Sbjct 93 IGKTFPA 99
>gi|260905692|ref|ZP_05914014.1| hypothetical protein BlinB_10202 [Brevibacterium linens BL2]
Length=119
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/92 (32%), Positives = 43/92 (47%), Gaps = 4/92 (4%)
Query 11 AVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALAR 70
AV+A + D + P IA LD + +P VL VVK + GL++ P +
Sbjct 12 AVMAFIVGVDGLLTFWPPKVIADCLDGVGLPRDWWWVLAVVKFLAVAGLIAGFWIPGVGL 71
Query 71 LTTAMLTLYFILAVGAHVRV----RDRVVNAI 98
L +YF+ A GAH+R RD +N +
Sbjct 72 AAIVGLIVYFLTAAGAHLRAGYIGRDFWLNCL 103
>gi|68535081|ref|YP_249786.1| hypothetical protein jk0019 [Corynebacterium jeikeium K411]
gi|68535695|ref|YP_250400.1| hypothetical protein jk0623 [Corynebacterium jeikeium K411]
gi|255324693|ref|ZP_05365807.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
7 more sequence titles
Length=120
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/82 (37%), Positives = 42/82 (52%), Gaps = 4/82 (4%)
Query 12 VLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARL 71
+LAA+ GDA P+P I L + +P L V+K +AVGL++ FP +
Sbjct 13 LLAAILLGDAALSLKPVPFIEACLSGVKLPKDWWWALIVIKCLAAVGLIAGLWFPGVG-- 70
Query 72 TTAMLTL--YFILAVGAHVRVR 91
TAM+ + YF A AHVR
Sbjct 71 ITAMIGVIAYFCAAAAAHVRAH 92
>gi|41407731|ref|NP_960567.1| hypothetical protein MAP1633c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396084|gb|AAS03950.1| hypothetical protein MAP_1633c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=117
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/72 (38%), Positives = 37/72 (52%), Gaps = 1/72 (1%)
Query 21 AVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGL-LSVTRFPALARLTTAMLTLY 79
A+A +P + + ++ VP + P L +K A AVGL L + P L L L+
Sbjct 17 AIADYVPAGFVLKNSAEVHVPAAALPYLATLKLAGAVGLTLGLVALPRLGVAAGIGLVLF 76
Query 80 FILAVGAHVRVR 91
F AVGAHVR R
Sbjct 77 FFGAVGAHVRAR 88
>gi|336457391|gb|EGO36400.1| hypothetical protein MAPs_22560 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=120
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/72 (38%), Positives = 37/72 (52%), Gaps = 1/72 (1%)
Query 21 AVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGL-LSVTRFPALARLTTAMLTLY 79
A+A +P + + ++ VP + P L +K A AVGL L + P L L L+
Sbjct 20 AIADYVPAGFVLKNSAEVHVPAAALPYLATLKLAGAVGLTLGLVALPRLGVAAGIGLVLF 79
Query 80 FILAVGAHVRVR 91
F AVGAHVR R
Sbjct 80 FFGAVGAHVRAR 91
>gi|227831966|ref|YP_002833673.1| hypothetical protein cauri_0136 [Corynebacterium aurimucosum
ATCC 700975]
gi|262183219|ref|ZP_06042640.1| hypothetical protein CaurA7_04440 [Corynebacterium aurimucosum
ATCC 700975]
gi|227452982|gb|ACP31735.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=120
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/80 (34%), Positives = 38/80 (48%), Gaps = 0/80 (0%)
Query 12 VLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARL 71
+LAA+ GDA P+P I L + +P L V+K +A GL++ FP +
Sbjct 13 LLAAILLGDAALSLKPVPFIEACLSGVKLPKDWWWALIVIKYLAAAGLIAGLWFPGVGIA 72
Query 72 TTAMLTLYFILAVGAHVRVR 91
T + YF A AHVR
Sbjct 73 TMVGVIAYFCAAAAAHVRAH 92
>gi|119716414|ref|YP_923379.1| integral membrane protein [Nocardioides sp. JS614]
gi|119537075|gb|ABL81692.1| integral membrane protein [Nocardioides sp. JS614]
Length=117
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (35%), Positives = 34/64 (54%), Gaps = 0/64 (0%)
Query 36 DDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVV 95
+ VP+ PVL ++ A A+G+++ L A LT YF+ A+G H+RV D
Sbjct 36 KTVGVPMRYIPVLAALEVAGAIGIVAGLWLEPLGIAAAAGLTAYFLGAMGGHLRVGDTKG 95
Query 96 NAIP 99
A+P
Sbjct 96 LAMP 99
>gi|294056263|ref|YP_003549921.1| hypothetical protein Caka_2736 [Coraliomargarita akajimensis
DSM 45221]
gi|293615596|gb|ADE55751.1| hypothetical protein Caka_2736 [Coraliomargarita akajimensis
DSM 45221]
Length=113
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/59 (33%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 55 SAVGLLSVTRFPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTLFALMTAK 113
+AVGLL+ P L+ L A L L +G + + D + +PAAS+L L + +
Sbjct 51 AAVGLLAGIWLPWLSGLAAAGLALQMACGLGLRIHIGDSWIKCLPAASYLLLCGWLATQ 109
>gi|251795732|ref|YP_003010463.1| DoxX family protein [Paenibacillus sp. JDR-2]
gi|247543358|gb|ACT00377.1| DoxX family protein [Paenibacillus sp. JDR-2]
Length=122
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (27%), Positives = 40/83 (49%), Gaps = 7/83 (8%)
Query 33 RLLDDLDVPVSVRPVLPVVKAASAVGLLSVTRFPALARLTTAMLTLYFILAVGAHVRVRD 92
L D + +P R V +V+ AVGL+ +P +A + + A+ +H+RV+
Sbjct 32 ELFDSIKLPQWFRVVTGLVQLIGAVGLIIGYWYPGMAGWAGVWIGITMFFAILSHLRVKH 91
Query 93 R-------VVNAIPAASFLTLFA 108
++N + AA+ + LFA
Sbjct 92 TFGKMFPAILNLVIAAAVILLFA 114
>gi|145221784|ref|YP_001132462.1| hypothetical protein Mflv_1192 [Mycobacterium gilvum PYR-GCK]
gi|315446478|ref|YP_004079357.1| hypothetical protein Mspyr1_49920 [Mycobacterium sp. Spyr1]
gi|145214270|gb|ABP43674.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315264781|gb|ADU01523.1| hypothetical protein Mspyr1_49920 [Mycobacterium sp. Spyr1]
Length=119
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/56 (43%), Positives = 29/56 (52%), Gaps = 1/56 (1%)
Query 37 DLDVPVSVRPVLPVVKAASAVGL-LSVTRFPALARLTTAMLTLYFILAVGAHVRVR 91
+ VPVS P L K A AVGL + + P + L L+FI AVGAH R R
Sbjct 35 QVHVPVSALPYLATAKLAGAVGLVIGLVAVPWVGVAAGIGLVLFFIGAVGAHGRAR 90
>gi|68535636|ref|YP_250341.1| hypothetical protein jk0564 [Corynebacterium jeikeium K411]
gi|260578294|ref|ZP_05846210.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|68263235|emb|CAI36723.1| putative membrane protein [Corynebacterium jeikeium K411]
gi|258603596|gb|EEW16857.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length=120
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/93 (31%), Positives = 48/93 (52%), Gaps = 3/93 (3%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS L + +Y +LAA+ AGDA+ P I R L+ + P L +K+ +A GL+
Sbjct 1 MSSLATGGSY-LLAAVLAGDALISVKPPKFIRRCLEGVKFPEDWWWTLIAIKSLAATGLV 59
Query 61 --SVTRFPALARLTTAMLTLYFILAVGAHVRVR 91
+ T ++A + + YF+ A+ AH++
Sbjct 60 YGAATGNASIATTVSVGVLGYFLSAIIAHIKAN 92
>gi|227502546|ref|ZP_03932595.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49725]
gi|306835109|ref|ZP_07468150.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
gi|227076708|gb|EEI14671.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49725]
gi|304569024|gb|EFM44548.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
Length=121
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/91 (32%), Positives = 46/91 (51%), Gaps = 3/91 (3%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
M L TY +LA + GDAV P I+R L ++ P L +KA +A+GL+
Sbjct 1 MGSLAVFGTY-LLAIVLIGDAVLSVKPPKFISRCLRGVNFPQDWWWALIGIKALAALGLI 59
Query 61 --SVTRFPALARLTTAMLTLYFILAVGAHVR 89
+V P++ + + YFI A+ AH++
Sbjct 60 VGAVLNNPSITATVSVGVLGYFIFAIIAHIK 90
>gi|296165111|ref|ZP_06847662.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295899523|gb|EFG78978.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=116
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/91 (38%), Positives = 44/91 (49%), Gaps = 1/91 (1%)
Query 12 VLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL-SVTRFPALAR 70
+ AA+ AG AVA IP + ++ VP S P L VK A A GL+ +T P L
Sbjct 11 ITAAITAGIAVADLIPARFVLANSAEVGVPRSWLPALGAVKLAGAAGLIVGLTGPPVLGI 70
Query 71 LTTAMLTLYFILAVGAHVRVRDRVVNAIPAA 101
A L L+F+ AV H+R A P A
Sbjct 71 AAAAGLVLFFVGAVVTHLRAHVLYNIAFPGA 101
>gi|225020798|ref|ZP_03709990.1| hypothetical protein CORMATOL_00806 [Corynebacterium matruchotii
ATCC 33806]
gi|224946433|gb|EEG27642.1| hypothetical protein CORMATOL_00806 [Corynebacterium matruchotii
ATCC 33806]
Length=120
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/91 (31%), Positives = 47/91 (52%), Gaps = 3/91 (3%)
Query 1 MSGLTSPKTYAVLAALQAGDAVACAIPLPPIARLLDDLDVPVSVRPVLPVVKAASAVGLL 60
MS L +Y +LAA+ AGDA+ P I++ L ++ P L +K+ +A GL+
Sbjct 1 MSSLAVGGSY-LLAAVLAGDALMSIKPPKFISQCLSGVNFPKDWWWALIGIKSLAATGLV 59
Query 61 SVTRFPALARLTTAMLTL--YFILAVGAHVR 89
+ + TT + + YFI A+ AH++
Sbjct 60 AGATIGDTSITTTVSIGVLGYFIFAIIAHIK 90
>gi|294056262|ref|YP_003549920.1| hypothetical protein Caka_2735 [Coraliomargarita akajimensis
DSM 45221]
gi|293615595|gb|ADE55750.1| conserved hypothetical protein [Coraliomargarita akajimensis
DSM 45221]
Length=122
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/42 (39%), Positives = 26/42 (62%), Gaps = 0/42 (0%)
Query 65 FPALARLTTAMLTLYFILAVGAHVRVRDRVVNAIPAASFLTL 106
+PAL R ++ L + AVG H +V+D V ++PAA+ L +
Sbjct 72 WPALVRPAAGVMALLMLGAVGMHAKVKDPAVRSVPAAAMLVM 113
Lambda K H
0.325 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129536132814
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40