BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1490 Length=435 Score E Sequences producing significant alignments: (Bits) Value gi|15608628|ref|NP_216006.1| hypothetical protein Rv1490 [Mycoba... 868 0.0 gi|289442939|ref|ZP_06432683.1| membrane protein [Mycobacterium ... 866 0.0 gi|340626506|ref|YP_004744958.1| hypothetical protein MCAN_15081... 860 0.0 gi|308231854|ref|ZP_07414017.2| membrane protein [Mycobacterium ... 818 0.0 gi|118464861|ref|YP_881219.1| hypothetical protein MAV_2000 [Myc... 290 3e-76 gi|336458155|gb|EGO37138.1| hypothetical protein MAPs_16130 [Myc... 284 2e-74 gi|342857525|ref|ZP_08714181.1| hypothetical protein MCOL_01575 ... 280 3e-73 gi|254774720|ref|ZP_05216236.1| hypothetical protein MaviaA2_086... 268 2e-69 gi|254821609|ref|ZP_05226610.1| hypothetical protein MintA_16867... 262 1e-67 gi|126435679|ref|YP_001071370.1| hypothetical protein Mjls_3100 ... 258 2e-66 gi|167041811|gb|ABZ06553.1| hypothetical protein ALOHA_HF4000093... 38.9 1.9 gi|300870388|ref|YP_003785259.1| hypothetical protein BP951000_0... 36.6 8.3 gi|94967830|ref|YP_589878.1| vitamin K epoxide reductase [Candid... 36.6 8.3 >gi|15608628|ref|NP_216006.1| hypothetical protein Rv1490 [Mycobacterium tuberculosis H37Rv] gi|15840952|ref|NP_335989.1| hypothetical protein MT1536 [Mycobacterium tuberculosis CDC1551] gi|31792686|ref|NP_855179.1| hypothetical protein Mb1527 [Mycobacterium bovis AF2122/97] 46 more sequence titlesLength=435 Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/435 (99%), Positives = 435/435 (100%), Gaps = 0/435 (0%) Query 1 VSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF 60 +SQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF Sbjct 1 MSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF 60 Query 61 PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW 120 PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW Sbjct 61 PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW 120 Query 121 LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV 180 LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV Sbjct 121 LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV 180 Query 181 ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL 240 ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL Sbjct 181 ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL 240 Query 241 LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP 300 LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP Sbjct 241 LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP 300 Query 301 WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL 360 WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL Sbjct 301 WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL 360 Query 361 PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL 420 PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL Sbjct 361 PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL 420 Query 421 VLAVIPTGSANNIGR 435 VLAVIPTGSANNIGR Sbjct 421 VLAVIPTGSANNIGR 435 >gi|289442939|ref|ZP_06432683.1| membrane protein [Mycobacterium tuberculosis T46] gi|289569516|ref|ZP_06449743.1| membrane protein [Mycobacterium tuberculosis T17] gi|289750052|ref|ZP_06509430.1| membrane protein [Mycobacterium tuberculosis T92] gi|289415858|gb|EFD13098.1| membrane protein [Mycobacterium tuberculosis T46] gi|289543270|gb|EFD46918.1| membrane protein [Mycobacterium tuberculosis T17] gi|289690639|gb|EFD58068.1| membrane protein [Mycobacterium tuberculosis T92] Length=435 Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/435 (99%), Positives = 434/435 (99%), Gaps = 0/435 (0%) Query 1 VSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF 60 +SQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF Sbjct 1 MSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF 60 Query 61 PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW 120 PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW Sbjct 61 PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW 120 Query 121 LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV 180 LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFL RAHTSRTRV Sbjct 121 LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLNRAHTSRTRV 180 Query 181 ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL 240 ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL Sbjct 181 ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL 240 Query 241 LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP 300 LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP Sbjct 241 LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP 300 Query 301 WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL 360 WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL Sbjct 301 WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL 360 Query 361 PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL 420 PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL Sbjct 361 PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL 420 Query 421 VLAVIPTGSANNIGR 435 VLAVIPTGSANNIGR Sbjct 421 VLAVIPTGSANNIGR 435 >gi|340626506|ref|YP_004744958.1| hypothetical protein MCAN_15081 [Mycobacterium canettii CIPT 140010059] gi|340004696|emb|CCC43840.1| putative membrane protein [Mycobacterium canettii CIPT 140010059] Length=435 Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/435 (99%), Positives = 432/435 (99%), Gaps = 0/435 (0%) Query 1 VSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF 60 +SQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF Sbjct 1 MSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF 60 Query 61 PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW 120 PNAILWLHYY+ASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW Sbjct 61 PNAILWLHYYSASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW 120 Query 121 LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV 180 LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTR HTSRTRV Sbjct 121 LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRVHTSRTRV 180 Query 181 ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL 240 ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTV VL Sbjct 181 ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVLVL 240 Query 241 LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP 300 LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP Sbjct 241 LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP 300 Query 301 WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL 360 WFNLDWITSAKLVAVVGFRALFGA LLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL Sbjct 301 WFNLDWITSAKLVAVVGFRALFGALLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL 360 Query 361 PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL 420 PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL Sbjct 361 PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL 420 Query 421 VLAVIPTGSANNIGR 435 VLAVIPTGSANNIGR Sbjct 421 VLAVIPTGSANNIGR 435 >gi|308231854|ref|ZP_07414017.2| membrane protein [Mycobacterium tuberculosis SUMu001] gi|308369454|ref|ZP_07417837.2| membrane protein [Mycobacterium tuberculosis SUMu002] gi|308370735|ref|ZP_07422552.2| membrane protein [Mycobacterium tuberculosis SUMu003] 20 more sequence titles Length=411 Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/411 (99%), Positives = 411/411 (100%), Gaps = 0/411 (0%) Query 25 VKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLG 84 +KYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLG Sbjct 1 MKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLG 60 Query 85 GELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPF 144 GELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPF Sbjct 61 GELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPF 120 Query 145 AFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEF 204 AFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEF Sbjct 121 AFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEF 180 Query 205 ALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVE 264 ALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVE Sbjct 181 ALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVE 240 Query 265 NPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGA 324 NPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGA Sbjct 241 NPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGA 300 Query 325 FLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVM 384 FLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVM Sbjct 301 FLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVM 360 Query 385 ITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIGR 435 ITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIGR Sbjct 361 ITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIGR 411 >gi|118464861|ref|YP_881219.1| hypothetical protein MAV_2000 [Mycobacterium avium 104] gi|118166148|gb|ABK67045.1| conserved hypothetical protein [Mycobacterium avium 104] Length=418 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 154/376 (41%), Positives = 230/376 (62%), Gaps = 2/376 (0%) Query 59 VFPNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVV 118 V P + W+ YYAA Y GFVRRGL GEL+ ++ G H+FA V W S V+L LA V Sbjct 40 VVPLDVYWMSYYAADYTHGFVRRGLAGELVHLVPG-HYFAVGLGVRWMSTAVYLCGLAAV 98 Query 119 VWLILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRT 178 ++L+ G RS+RR+M+A+L+P+LPF +A ++ P+LFG TAL FS LT A + Sbjct 99 AGVVLAGGPRSQRRLMVAMLIPLLPFGVPFAAFSARPDLFGGTALALFSTALTHARSRAL 158 Query 179 RVILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVS 238 + LYG +AVL L+HEAI L+FA GAVLAI+VL G+ RR+ +A+ PG ++ Sbjct 159 AMGWCALYGGAIAVLTLVHEAIGLQFAFGAVLAIVVLG-GGLGSARRLGALVAVTPGVLA 217 Query 239 VLLLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHV 298 ++AV+GR D+A +LCA +PH ++ NP+A T+P+ +L ++ S DYHDWVC +V Sbjct 218 AAMVAVLGRHDVAAELCAAVPHRLMPNPFAKVTSPETLLRFVIEGPPSQTDYHDWVCRNV 277 Query 299 TPWFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNL 358 P ++ + + V +G L + + G VAT + +S VP F A L G + Sbjct 278 MPNYDNGISDALRAVGQIGALGLTVSLIFGAAAVVATLWGLGELSGVPWHAFVAALHGRM 337 Query 359 ALPVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCV 418 L+VP+F+T DWTRW ++ D+AIV++L+A R EI+Q P+ R +++F+ + Sbjct 338 TWVTAGLLLVVPVFLTGYDWTRWLTVVAFDIAIVFLLFASRRAEIDQAPTPRTLRLFIVL 397 Query 419 VLVLAVIPTGSANNIG 434 V+ A+IP G+ G Sbjct 398 VIAFALIPVGAVPGFG 413 >gi|336458155|gb|EGO37138.1| hypothetical protein MAPs_16130 [Mycobacterium avium subsp. paratuberculosis S397] Length=418 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 158/404 (40%), Positives = 239/404 (60%), Gaps = 2/404 (0%) Query 31 ADKRARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLGGELIRM 90 A +R RVYV + + W ++ V P + W+ YYAA Y GFVRRGL GEL+ + Sbjct 12 ARRRHRVYVGIGAAIAAWAALVLWCAIRVVPLDVYWMSYYAADYTHGFVRRGLAGELVHL 71 Query 91 LTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPFAFSYAI 150 + G H+FA V W S V+L LA V ++L+ G RS+RR+M+A+L+P+LPF +A Sbjct 72 VPG-HYFAVGLGVRWMSTAVYLCGLAAVAGVVLAGGPRSQRRLMVAMLIPLLPFGVPFAA 130 Query 151 YNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEFALGAVL 210 ++ P+LFG AL FS LT A + + LYG +AVL L+HEAI L+F GAVL Sbjct 131 FSARPDLFGGAALALFSTALTHARSRALAMGWCALYGGAIAVLTLVHEAIGLQFGFGAVL 190 Query 211 AIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVENPWAVA 270 AI+VL G+ RR+ +A+ PG ++ ++AV+GR D+A +LCA +PH ++ NP+A Sbjct 191 AIVVLG-GGLGSARRLGALVAVTPGVLAAAMVAVLGRHDVAAELCAAVPHRLMPNPFAKV 249 Query 271 TTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGAFLLGLL 330 T+P+ +L ++ S DYHDWV +V P ++ + + V +G L + + G Sbjct 250 TSPETLLRFVIEGPPSQTDYHDWVRRNVMPNYDNGISDALRAVGQIGALGLTVSLIFGAA 309 Query 331 FFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVMITLDVA 390 VAT + +S VP F A L G + L+VP+F+T DWTRW ++ D+A Sbjct 310 AVVATLWGLGELSGVPWHAFVAALHGRMTWVTAGLLLVVPVFLTGYDWTRWLTVVAFDIA 369 Query 391 IVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIG 434 IV++L+A R EI+Q P+ R +++F+ +V+ A+IP G+ G Sbjct 370 IVFLLFASRRGEIDQAPTPRTLRLFIVLVIAFALIPVGAVPGFG 413 >gi|342857525|ref|ZP_08714181.1| hypothetical protein MCOL_01575 [Mycobacterium colombiense CECT 3035] gi|342134858|gb|EGT88024.1| hypothetical protein MCOL_01575 [Mycobacterium colombiense CECT 3035] Length=409 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/376 (41%), Positives = 227/376 (61%), Gaps = 2/376 (0%) Query 59 VFPNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVV 118 V P + W+ YYAA Y GFVRRGL GEL+R++ +H+F + W S V+L ALA V Sbjct 31 VVPLDVYWMSYYAADYTHGFVRRGLAGELVRLVP-NHYFGATLGLRWVSTAVYLCALAAV 89 Query 119 VWLILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRT 178 ++LS RSERR+M+A+L+P+LPF +A ++ P+LFG AL FS L + Sbjct 90 AGVVLSHHYRSERRLMVAMLIPLLPFGVPFAAFSARPDLFGAAALALFSSALMLTRSRPV 149 Query 179 RVILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVS 238 + YG +AVL L+HEAI L+FALG VLAI+VL A + +R+ LA+ PG ++ Sbjct 150 AMGWCAAYGAVIAVLTLMHEAIGLQFALGTVLAIVVLG-GALESGQRLGALLAVTPGVIT 208 Query 239 VLLLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHV 298 ++A GR D+A +LCA +PH + NP+A T+P+ +L ++ S DYHDWVC +V Sbjct 209 TAVVAAFGRHDVASRLCAAVPHHRMPNPFATVTSPETLLRFVLDGRSSQTDYHDWVCRNV 268 Query 299 TPWFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNL 358 TP ++ + + V +G L + L G AT +R +S VP+R F LRG + Sbjct 269 TPNYDNGISDAIRTVGHIGALGLTVSLLFGAAAVAATLWGLRELSGVPLRAFAESLRGRV 328 Query 359 ALPVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCV 418 A L++P+F+T DWTRW +I DVA+V+IL+A RPE++Q P+ + +++FV + Sbjct 329 AWVAAGLLLVIPVFLTGYDWTRWLTIIAFDVAVVFILFAARRPEMDQAPTPKTLRLFVFL 388 Query 419 VLVLAVIPTGSANNIG 434 + A+IP G+ G Sbjct 389 AIAFALIPVGAVPGFG 404 >gi|254774720|ref|ZP_05216236.1| hypothetical protein MaviaA2_08613 [Mycobacterium avium subsp. avium ATCC 25291] Length=416 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 165/411 (41%), Positives = 237/411 (58%), Gaps = 3/411 (0%) Query 25 VKYAQLADKRAR-VYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGL 83 V A AD RAR ++V V+ + W ++F V P + W+ YY A Y GFVRRGL Sbjct 3 VDLALDADHRARRLHVGVAVAIAAWAAAVLWFAIKVVPLDVYWMSYYTADYTHGFVRRGL 62 Query 84 GGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLP 143 GEL+R L +H+FA ++ W S ++L LA V +++S +RSERR+M+A ++P+LP Sbjct 63 AGELVR-LAPNHYFAATLSLRWLSTLIYLGGLATVAGVVVSGRHRSERRLMVAAVLPLLP 121 Query 144 FAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLE 203 F +A ++ P+LFG AL AFS L + I YG +A L L+HEAI L+ Sbjct 122 FGVPFAAFSARPDLFGGAALAAFSSALALTRSRPAATIWCAAYGAVIAALTLVHEAIGLQ 181 Query 204 FALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMV 263 FALGA LAIIVL A T R LA+ PG ++ +A GR DIA QLCA +PH V Sbjct 182 FALGAFLAIIVLG-GALETTWRRGMLLAVLPGVLTTAAVAAFGRHDIAPQLCAAVPHHPV 240 Query 264 ENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFG 323 NP+A T+P ++ Y+ S DYHDWVC +V P + + + V +G L Sbjct 241 PNPFATVTSPATLMHYVLAGQPSQTDYHDWVCRNVMPNYANGIADAIRTVGHIGALDLTV 300 Query 324 AFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWV 383 + L G T + +S VP+R F LRG A + L++P+F+T DWTRW Sbjct 301 SLLFGAGAAAVTVWGLSALSGVPLRAFVDALRGRTAWVIAGLLLVIPVFLTGFDWTRWLT 360 Query 384 MITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIG 434 ++ DVAIV++L+A RPEI++ P+ + V++F+ +V+ LA+IP G+ G Sbjct 361 IVAFDVAIVFLLFAARRPEIDRRPTPKTVRLFILLVIALALIPVGAVPGFG 411 >gi|254821609|ref|ZP_05226610.1| hypothetical protein MintA_16867 [Mycobacterium intracellulare ATCC 13950] Length=415 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 160/414 (39%), Positives = 233/414 (57%), Gaps = 7/414 (1%) Query 24 LVKYAQLADKRAR-VYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRG 82 +V +A +RAR +Y ++ + W ++F V P + W+ YY A Y GFVRRG Sbjct 1 MVDLGLVAHQRARRLYAGIAISIAAWAAAVLWFAIKVVPLDVYWMSYYTADYTHGFVRRG 60 Query 83 LGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVL 142 L GEL+R L H+F ++ W S V+L LA V ++L SERR+M+A ++P+L Sbjct 61 LAGELVR-LAPSHYFTATLSLRWLSTVVYLCGLATVAGVVLFGRRPSERRLMVATVLPLL 119 Query 143 PFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPL 202 PF +A ++ P+LFG AL AFS L + YG +A L L+HEAI L Sbjct 120 PFGIPFAAFSARPDLFGGAALAAFSSALALTQSRAVATARCAAYGAVIAALTLVHEAIGL 179 Query 203 EFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGM 262 +FALGA LAIIVL A T+R LA+ PG ++ +A GR DIA QLCA +PH + Sbjct 180 QFALGAFLAIIVLG-GALETTQRRGMLLAVLPGVLTTAAVAAFGRHDIAPQLCAAVPHRL 238 Query 263 VENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALF 322 V NP+A T+P ++ Y+ S DYHDWVC +V P + + + V +G L Sbjct 239 VPNPFATVTSPATLMHYVLAEQPSQTDYHDWVCRNVMPHYANGITDAIRTVGHIGALGLT 298 Query 323 GAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALL--VPLFITAVDWTR 380 + + G T + +S VP+R F LR P +A+ LL +P+F+T DWTR Sbjct 299 VSLIFGAGAAAVTVWGLSALSGVPLRAFTEALRAR--TPWVATGLLLVIPVFLTGFDWTR 356 Query 381 WWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIG 434 W ++ DVAIV++L+A RPEI+Q P+ + +++FV +V+ A+IP G+ G Sbjct 357 WLTIVAFDVAIVFLLFAARRPEIDQRPTPKTLRLFVLLVIAFALIPVGAVPGFG 410 >gi|126435679|ref|YP_001071370.1| hypothetical protein Mjls_3100 [Mycobacterium sp. JLS] gi|126235479|gb|ABN98879.1| putative membrane protein [Mycobacterium sp. JLS] Length=410 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/394 (38%), Positives = 223/394 (57%), Gaps = 5/394 (1%) Query 35 ARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLGGELIRMLTGD 94 +R Y+ + L+VW + + P+ + Y++ Y GFVRRGL GE++ + + D Sbjct 11 SRRYLTFALLLLVWMFSLLVIAMTLIPDGYFY-SYFSVDYSRGFVRRGLAGEILNLFSRD 69 Query 95 HFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPFAFSYAIYNPH 154 +F + W + + LA ++W +L+ G RSER++ LALL+P+LPF F++ +++ Sbjct 70 DYFGALRVMRWIPTVAFGLGLAALIWSVLARGGRSERKLQLALLIPILPFGFAFGLFSAR 129 Query 155 PELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIV 214 +L G AL AF+I LT T R VILS +YG +AVL L+HEA P F LGA+ A+ V Sbjct 130 TDLLGAAALAAFAISLTSVTTGRGTVILSAVYGAALAVLTLMHEATPFLFGLGAIAALTV 189 Query 215 LSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQ 274 L++ + + C+ LA PG + L +AV G R I+ LC +PHG + +P A T Sbjct 190 LARGLSTSAFGWCSVLASLPGLATALAVAVFGERGISGALCQSVPHGPMNHPLAGKPTVS 249 Query 275 RVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVA 334 ++L R E DYHDW+C + P F+ + + + V +G AL G+ L G+ Sbjct 250 QILHGF--RYE--VDYHDWMCRAILPLFDQSFGDALRFVRSIGPLALSGSTLYGIGLLAV 305 Query 335 TTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVMITLDVAIVYI 394 + +I S VP+R F L A VL L +P+F+T VDW RWW IT ++ IV+I Sbjct 306 SMCLIAQASGVPLRRFRDVLLTRKAAVVLGLVLFLPVFLTGVDWIRWWATITYNLGIVFI 365 Query 395 LYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTG 428 LYA +PE+ +PP+RR+ V VLA++P G Sbjct 366 LYATRQPELSEPPTRRSTTVVAVAGTVLALLPIG 399 >gi|167041811|gb|ABZ06553.1| hypothetical protein ALOHA_HF4000093M11ctg1g39 [uncultured marine microorganism HF4000_093M11] Length=503 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 53/222 (24%), Positives = 94/222 (43%), Gaps = 24/222 (10%) Query 73 SYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERR 132 +YE GF+RRGL GE+I L FF + I L+++ +L+ R E+ Sbjct 40 NYEGGFIRRGLSGEII--LRTSSFFDVQIKFTYFCILS---ILSLLFYLLFFDFLRKEKL 94 Query 133 IMLALLVPVLPFAFSYAIYNPHPELFG------MTALVAFSIFLTRAHTSRTRVILSTLY 186 L + + P + S+ IYN FG + + F +FL + + + Sbjct 95 NFQNLFIILSPLSISFIIYN-----FGAIGRKEILYFIIFLVFLYLVEILKKKELSIFFL 149 Query 187 GLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVG 246 + ++ L+HE L F + A L I + N T T ++S +L V+ Sbjct 150 IIFFPLVLLLHEG--LIFFISAFLVIFLFEINKTNKKFIFLTIFIFILISLSTFILMVIF 207 Query 247 RRDIA--DQLCAHIPHGMVENPW---AVAT-TPQRVLDYIFG 282 + + A + +C+ + +E + A+AT + LD +F Sbjct 208 KGNTAQVEVICSSLSDYPIEGCFLGSAIATLSSVHTLDSVFS 249 >gi|300870388|ref|YP_003785259.1| hypothetical protein BP951000_0760 [Brachyspira pilosicoli 95/1000] gi|300688087|gb|ADK30758.1| conserved hypothetical protein [Brachyspira pilosicoli 95/1000] Length=635 Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust. Identities = 17/59 (29%), Positives = 33/59 (56%), Gaps = 0/59 (0%) Query 367 LLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVI 425 L++P I WTR+ V I +++ I YILY + + I + + V +V+++++I Sbjct 189 LIIPFIIFVFSWTRYIVSIPVNMIIFYILYLMIKDSIINYNKVYKINIIVFIVMIMSII 247 >gi|94967830|ref|YP_589878.1| vitamin K epoxide reductase [Candidatus Koribacter versatilis Ellin345] gi|94549880|gb|ABF39804.1| Vitamin K epoxide reductase [Candidatus Koribacter versatilis Ellin345] Length=553 Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust. Identities = 24/81 (30%), Positives = 48/81 (60%), Gaps = 10/81 (12%) Query 352 AELRGNLALPVLASALLVPLFITAVD------WTRWWVMITLDVAIVYILYAID--RPEI 403 ++L +A + A+ L+V L++T+++ W W V + +A+++IL ++ +PE Sbjct 80 SKLLKRIAFYLSAAGLIVSLYLTSLEAFQIHAWCAWCVAQQIAIALIFILLGVELGKPES 139 Query 404 EQPP-SRRNVQVF-VCVVLVL 422 + P ++RNV V +CVVL + Sbjct 140 DTPKRAQRNVAVLIICVVLAI 160 Lambda K H 0.330 0.141 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 888274778888 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40