BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1490

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608628|ref|NP_216006.1|  hypothetical protein Rv1490 [Mycoba...   868    0.0  
gi|289442939|ref|ZP_06432683.1|  membrane protein [Mycobacterium ...   866    0.0  
gi|340626506|ref|YP_004744958.1|  hypothetical protein MCAN_15081...   860    0.0  
gi|308231854|ref|ZP_07414017.2|  membrane protein [Mycobacterium ...   818    0.0  
gi|118464861|ref|YP_881219.1|  hypothetical protein MAV_2000 [Myc...   290    3e-76
gi|336458155|gb|EGO37138.1|  hypothetical protein MAPs_16130 [Myc...   284    2e-74
gi|342857525|ref|ZP_08714181.1|  hypothetical protein MCOL_01575 ...   280    3e-73
gi|254774720|ref|ZP_05216236.1|  hypothetical protein MaviaA2_086...   268    2e-69
gi|254821609|ref|ZP_05226610.1|  hypothetical protein MintA_16867...   262    1e-67
gi|126435679|ref|YP_001071370.1|  hypothetical protein Mjls_3100 ...   258    2e-66
gi|167041811|gb|ABZ06553.1|  hypothetical protein ALOHA_HF4000093...  38.9    1.9  
gi|300870388|ref|YP_003785259.1|  hypothetical protein BP951000_0...  36.6    8.3  
gi|94967830|ref|YP_589878.1|  vitamin K epoxide reductase [Candid...  36.6    8.3  


>gi|15608628|ref|NP_216006.1| hypothetical protein Rv1490 [Mycobacterium tuberculosis H37Rv]
 gi|15840952|ref|NP_335989.1| hypothetical protein MT1536 [Mycobacterium tuberculosis CDC1551]
 gi|31792686|ref|NP_855179.1| hypothetical protein Mb1527 [Mycobacterium bovis AF2122/97]
 46 more sequence titles
 Length=435

 Score =  868 bits (2242),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/435 (99%), Positives = 435/435 (100%), Gaps = 0/435 (0%)

Query  1    VSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF  60
            +SQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF
Sbjct  1    MSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF  60

Query  61   PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW  120
            PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW
Sbjct  61   PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW  120

Query  121  LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV  180
            LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV
Sbjct  121  LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV  180

Query  181  ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL  240
            ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL
Sbjct  181  ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL  240

Query  241  LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP  300
            LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP
Sbjct  241  LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP  300

Query  301  WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL  360
            WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL
Sbjct  301  WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL  360

Query  361  PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL  420
            PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL
Sbjct  361  PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL  420

Query  421  VLAVIPTGSANNIGR  435
            VLAVIPTGSANNIGR
Sbjct  421  VLAVIPTGSANNIGR  435


>gi|289442939|ref|ZP_06432683.1| membrane protein [Mycobacterium tuberculosis T46]
 gi|289569516|ref|ZP_06449743.1| membrane protein [Mycobacterium tuberculosis T17]
 gi|289750052|ref|ZP_06509430.1| membrane protein [Mycobacterium tuberculosis T92]
 gi|289415858|gb|EFD13098.1| membrane protein [Mycobacterium tuberculosis T46]
 gi|289543270|gb|EFD46918.1| membrane protein [Mycobacterium tuberculosis T17]
 gi|289690639|gb|EFD58068.1| membrane protein [Mycobacterium tuberculosis T92]
Length=435

 Score =  866 bits (2238),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/435 (99%), Positives = 434/435 (99%), Gaps = 0/435 (0%)

Query  1    VSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF  60
            +SQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF
Sbjct  1    MSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF  60

Query  61   PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW  120
            PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW
Sbjct  61   PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW  120

Query  121  LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV  180
            LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFL RAHTSRTRV
Sbjct  121  LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLNRAHTSRTRV  180

Query  181  ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL  240
            ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL
Sbjct  181  ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL  240

Query  241  LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP  300
            LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP
Sbjct  241  LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP  300

Query  301  WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL  360
            WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL
Sbjct  301  WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL  360

Query  361  PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL  420
            PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL
Sbjct  361  PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL  420

Query  421  VLAVIPTGSANNIGR  435
            VLAVIPTGSANNIGR
Sbjct  421  VLAVIPTGSANNIGR  435


>gi|340626506|ref|YP_004744958.1| hypothetical protein MCAN_15081 [Mycobacterium canettii CIPT 
140010059]
 gi|340004696|emb|CCC43840.1| putative membrane protein [Mycobacterium canettii CIPT 140010059]
Length=435

 Score =  860 bits (2221),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/435 (99%), Positives = 432/435 (99%), Gaps = 0/435 (0%)

Query  1    VSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF  60
            +SQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF
Sbjct  1    MSQCFAVKGIGGADQATLGSAEILVKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVF  60

Query  61   PNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW  120
            PNAILWLHYY+ASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW
Sbjct  61   PNAILWLHYYSASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVW  120

Query  121  LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRV  180
            LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTR HTSRTRV
Sbjct  121  LILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRVHTSRTRV  180

Query  181  ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVL  240
            ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTV VL
Sbjct  181  ILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVLVL  240

Query  241  LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP  300
            LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP
Sbjct  241  LLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTP  300

Query  301  WFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL  360
            WFNLDWITSAKLVAVVGFRALFGA LLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL
Sbjct  301  WFNLDWITSAKLVAVVGFRALFGALLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLAL  360

Query  361  PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL  420
            PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL
Sbjct  361  PVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVL  420

Query  421  VLAVIPTGSANNIGR  435
            VLAVIPTGSANNIGR
Sbjct  421  VLAVIPTGSANNIGR  435


>gi|308231854|ref|ZP_07414017.2| membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308369454|ref|ZP_07417837.2| membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308370735|ref|ZP_07422552.2| membrane protein [Mycobacterium tuberculosis SUMu003]
 20 more sequence titles
 Length=411

 Score =  818 bits (2114),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/411 (99%), Positives = 411/411 (100%), Gaps = 0/411 (0%)

Query  25   VKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLG  84
            +KYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLG
Sbjct  1    MKYAQLADKRARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLG  60

Query  85   GELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPF  144
            GELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPF
Sbjct  61   GELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPF  120

Query  145  AFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEF  204
            AFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEF
Sbjct  121  AFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEF  180

Query  205  ALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVE  264
            ALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVE
Sbjct  181  ALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVE  240

Query  265  NPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGA  324
            NPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGA
Sbjct  241  NPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGA  300

Query  325  FLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVM  384
            FLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVM
Sbjct  301  FLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVM  360

Query  385  ITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIGR  435
            ITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIGR
Sbjct  361  ITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIGR  411


>gi|118464861|ref|YP_881219.1| hypothetical protein MAV_2000 [Mycobacterium avium 104]
 gi|118166148|gb|ABK67045.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=418

 Score =  290 bits (742),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 154/376 (41%), Positives = 230/376 (62%), Gaps = 2/376 (0%)

Query  59   VFPNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVV  118
            V P  + W+ YYAA Y  GFVRRGL GEL+ ++ G H+FA    V W S  V+L  LA V
Sbjct  40   VVPLDVYWMSYYAADYTHGFVRRGLAGELVHLVPG-HYFAVGLGVRWMSTAVYLCGLAAV  98

Query  119  VWLILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRT  178
              ++L+ G RS+RR+M+A+L+P+LPF   +A ++  P+LFG TAL  FS  LT A +   
Sbjct  99   AGVVLAGGPRSQRRLMVAMLIPLLPFGVPFAAFSARPDLFGGTALALFSTALTHARSRAL  158

Query  179  RVILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVS  238
             +    LYG  +AVL L+HEAI L+FA GAVLAI+VL     G+ RR+   +A+ PG ++
Sbjct  159  AMGWCALYGGAIAVLTLVHEAIGLQFAFGAVLAIVVLG-GGLGSARRLGALVAVTPGVLA  217

Query  239  VLLLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHV  298
              ++AV+GR D+A +LCA +PH ++ NP+A  T+P+ +L ++     S  DYHDWVC +V
Sbjct  218  AAMVAVLGRHDVAAELCAAVPHRLMPNPFAKVTSPETLLRFVIEGPPSQTDYHDWVCRNV  277

Query  299  TPWFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNL  358
             P ++     + + V  +G   L  + + G    VAT   +  +S VP   F A L G +
Sbjct  278  MPNYDNGISDALRAVGQIGALGLTVSLIFGAAAVVATLWGLGELSGVPWHAFVAALHGRM  337

Query  359  ALPVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCV  418
                    L+VP+F+T  DWTRW  ++  D+AIV++L+A  R EI+Q P+ R +++F+ +
Sbjct  338  TWVTAGLLLVVPVFLTGYDWTRWLTVVAFDIAIVFLLFASRRAEIDQAPTPRTLRLFIVL  397

Query  419  VLVLAVIPTGSANNIG  434
            V+  A+IP G+    G
Sbjct  398  VIAFALIPVGAVPGFG  413


>gi|336458155|gb|EGO37138.1| hypothetical protein MAPs_16130 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=418

 Score =  284 bits (726),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 158/404 (40%), Positives = 239/404 (60%), Gaps = 2/404 (0%)

Query  31   ADKRARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLGGELIRM  90
            A +R RVYV +   +  W    ++    V P  + W+ YYAA Y  GFVRRGL GEL+ +
Sbjct  12   ARRRHRVYVGIGAAIAAWAALVLWCAIRVVPLDVYWMSYYAADYTHGFVRRGLAGELVHL  71

Query  91   LTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPFAFSYAI  150
            + G H+FA    V W S  V+L  LA V  ++L+ G RS+RR+M+A+L+P+LPF   +A 
Sbjct  72   VPG-HYFAVGLGVRWMSTAVYLCGLAAVAGVVLAGGPRSQRRLMVAMLIPLLPFGVPFAA  130

Query  151  YNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEFALGAVL  210
            ++  P+LFG  AL  FS  LT A +    +    LYG  +AVL L+HEAI L+F  GAVL
Sbjct  131  FSARPDLFGGAALALFSTALTHARSRALAMGWCALYGGAIAVLTLVHEAIGLQFGFGAVL  190

Query  211  AIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVENPWAVA  270
            AI+VL     G+ RR+   +A+ PG ++  ++AV+GR D+A +LCA +PH ++ NP+A  
Sbjct  191  AIVVLG-GGLGSARRLGALVAVTPGVLAAAMVAVLGRHDVAAELCAAVPHRLMPNPFAKV  249

Query  271  TTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGAFLLGLL  330
            T+P+ +L ++     S  DYHDWV  +V P ++     + + V  +G   L  + + G  
Sbjct  250  TSPETLLRFVIEGPPSQTDYHDWVRRNVMPNYDNGISDALRAVGQIGALGLTVSLIFGAA  309

Query  331  FFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVMITLDVA  390
              VAT   +  +S VP   F A L G +        L+VP+F+T  DWTRW  ++  D+A
Sbjct  310  AVVATLWGLGELSGVPWHAFVAALHGRMTWVTAGLLLVVPVFLTGYDWTRWLTVVAFDIA  369

Query  391  IVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIG  434
            IV++L+A  R EI+Q P+ R +++F+ +V+  A+IP G+    G
Sbjct  370  IVFLLFASRRGEIDQAPTPRTLRLFIVLVIAFALIPVGAVPGFG  413


>gi|342857525|ref|ZP_08714181.1| hypothetical protein MCOL_01575 [Mycobacterium colombiense CECT 
3035]
 gi|342134858|gb|EGT88024.1| hypothetical protein MCOL_01575 [Mycobacterium colombiense CECT 
3035]
Length=409

 Score =  280 bits (716),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 153/376 (41%), Positives = 227/376 (61%), Gaps = 2/376 (0%)

Query  59   VFPNAILWLHYYAASYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVV  118
            V P  + W+ YYAA Y  GFVRRGL GEL+R++  +H+F     + W S  V+L ALA V
Sbjct  31   VVPLDVYWMSYYAADYTHGFVRRGLAGELVRLVP-NHYFGATLGLRWVSTAVYLCALAAV  89

Query  119  VWLILSTGNRSERRIMLALLVPVLPFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRT  178
              ++LS   RSERR+M+A+L+P+LPF   +A ++  P+LFG  AL  FS  L    +   
Sbjct  90   AGVVLSHHYRSERRLMVAMLIPLLPFGVPFAAFSARPDLFGAAALALFSSALMLTRSRPV  149

Query  179  RVILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVS  238
             +     YG  +AVL L+HEAI L+FALG VLAI+VL   A  + +R+   LA+ PG ++
Sbjct  150  AMGWCAAYGAVIAVLTLMHEAIGLQFALGTVLAIVVLG-GALESGQRLGALLAVTPGVIT  208

Query  239  VLLLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHV  298
              ++A  GR D+A +LCA +PH  + NP+A  T+P+ +L ++     S  DYHDWVC +V
Sbjct  209  TAVVAAFGRHDVASRLCAAVPHHRMPNPFATVTSPETLLRFVLDGRSSQTDYHDWVCRNV  268

Query  299  TPWFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNL  358
            TP ++     + + V  +G   L  + L G     AT   +R +S VP+R F   LRG +
Sbjct  269  TPNYDNGISDAIRTVGHIGALGLTVSLLFGAAAVAATLWGLRELSGVPLRAFAESLRGRV  328

Query  359  ALPVLASALLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCV  418
            A       L++P+F+T  DWTRW  +I  DVA+V+IL+A  RPE++Q P+ + +++FV +
Sbjct  329  AWVAAGLLLVIPVFLTGYDWTRWLTIIAFDVAVVFILFAARRPEMDQAPTPKTLRLFVFL  388

Query  419  VLVLAVIPTGSANNIG  434
             +  A+IP G+    G
Sbjct  389  AIAFALIPVGAVPGFG  404


>gi|254774720|ref|ZP_05216236.1| hypothetical protein MaviaA2_08613 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=416

 Score =  268 bits (684),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 165/411 (41%), Positives = 237/411 (58%), Gaps = 3/411 (0%)

Query  25   VKYAQLADKRAR-VYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGL  83
            V  A  AD RAR ++V V+  +  W    ++F   V P  + W+ YY A Y  GFVRRGL
Sbjct  3    VDLALDADHRARRLHVGVAVAIAAWAAAVLWFAIKVVPLDVYWMSYYTADYTHGFVRRGL  62

Query  84   GGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLP  143
             GEL+R L  +H+FA   ++ W S  ++L  LA V  +++S  +RSERR+M+A ++P+LP
Sbjct  63   AGELVR-LAPNHYFAATLSLRWLSTLIYLGGLATVAGVVVSGRHRSERRLMVAAVLPLLP  121

Query  144  FAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLE  203
            F   +A ++  P+LFG  AL AFS  L    +     I    YG  +A L L+HEAI L+
Sbjct  122  FGVPFAAFSARPDLFGGAALAAFSSALALTRSRPAATIWCAAYGAVIAALTLVHEAIGLQ  181

Query  204  FALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMV  263
            FALGA LAIIVL   A   T R    LA+ PG ++   +A  GR DIA QLCA +PH  V
Sbjct  182  FALGAFLAIIVLG-GALETTWRRGMLLAVLPGVLTTAAVAAFGRHDIAPQLCAAVPHHPV  240

Query  264  ENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFG  323
             NP+A  T+P  ++ Y+     S  DYHDWVC +V P +      + + V  +G   L  
Sbjct  241  PNPFATVTSPATLMHYVLAGQPSQTDYHDWVCRNVMPNYANGIADAIRTVGHIGALDLTV  300

Query  324  AFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWV  383
            + L G      T   +  +S VP+R F   LRG  A  +    L++P+F+T  DWTRW  
Sbjct  301  SLLFGAGAAAVTVWGLSALSGVPLRAFVDALRGRTAWVIAGLLLVIPVFLTGFDWTRWLT  360

Query  384  MITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIG  434
            ++  DVAIV++L+A  RPEI++ P+ + V++F+ +V+ LA+IP G+    G
Sbjct  361  IVAFDVAIVFLLFAARRPEIDRRPTPKTVRLFILLVIALALIPVGAVPGFG  411


>gi|254821609|ref|ZP_05226610.1| hypothetical protein MintA_16867 [Mycobacterium intracellulare 
ATCC 13950]
Length=415

 Score =  262 bits (669),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 160/414 (39%), Positives = 233/414 (57%), Gaps = 7/414 (1%)

Query  24   LVKYAQLADKRAR-VYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRG  82
            +V    +A +RAR +Y  ++  +  W    ++F   V P  + W+ YY A Y  GFVRRG
Sbjct  1    MVDLGLVAHQRARRLYAGIAISIAAWAAAVLWFAIKVVPLDVYWMSYYTADYTHGFVRRG  60

Query  83   LGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVL  142
            L GEL+R L   H+F    ++ W S  V+L  LA V  ++L     SERR+M+A ++P+L
Sbjct  61   LAGELVR-LAPSHYFTATLSLRWLSTVVYLCGLATVAGVVLFGRRPSERRLMVATVLPLL  119

Query  143  PFAFSYAIYNPHPELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPL  202
            PF   +A ++  P+LFG  AL AFS  L    +          YG  +A L L+HEAI L
Sbjct  120  PFGIPFAAFSARPDLFGGAALAAFSSALALTQSRAVATARCAAYGAVIAALTLVHEAIGL  179

Query  203  EFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGM  262
            +FALGA LAIIVL   A   T+R    LA+ PG ++   +A  GR DIA QLCA +PH +
Sbjct  180  QFALGAFLAIIVLG-GALETTQRRGMLLAVLPGVLTTAAVAAFGRHDIAPQLCAAVPHRL  238

Query  263  VENPWAVATTPQRVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALF  322
            V NP+A  T+P  ++ Y+     S  DYHDWVC +V P +      + + V  +G   L 
Sbjct  239  VPNPFATVTSPATLMHYVLAEQPSQTDYHDWVCRNVMPHYANGITDAIRTVGHIGALGLT  298

Query  323  GAFLLGLLFFVATTSMIRYVSAVPVRTFFAELRGNLALPVLASALL--VPLFITAVDWTR  380
             + + G      T   +  +S VP+R F   LR     P +A+ LL  +P+F+T  DWTR
Sbjct  299  VSLIFGAGAAAVTVWGLSALSGVPLRAFTEALRAR--TPWVATGLLLVIPVFLTGFDWTR  356

Query  381  WWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTGSANNIG  434
            W  ++  DVAIV++L+A  RPEI+Q P+ + +++FV +V+  A+IP G+    G
Sbjct  357  WLTIVAFDVAIVFLLFAARRPEIDQRPTPKTLRLFVLLVIAFALIPVGAVPGFG  410


>gi|126435679|ref|YP_001071370.1| hypothetical protein Mjls_3100 [Mycobacterium sp. JLS]
 gi|126235479|gb|ABN98879.1| putative membrane protein [Mycobacterium sp. JLS]
Length=410

 Score =  258 bits (658),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 147/394 (38%), Positives = 223/394 (57%), Gaps = 5/394 (1%)

Query  35   ARVYVLVSTWLVVWGIWHVYFVEAVFPNAILWLHYYAASYEFGFVRRGLGGELIRMLTGD  94
            +R Y+  +  L+VW    +     + P+   +  Y++  Y  GFVRRGL GE++ + + D
Sbjct  11   SRRYLTFALLLLVWMFSLLVIAMTLIPDGYFY-SYFSVDYSRGFVRRGLAGEILNLFSRD  69

Query  95   HFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERRIMLALLVPVLPFAFSYAIYNPH  154
             +F     + W     + + LA ++W +L+ G RSER++ LALL+P+LPF F++ +++  
Sbjct  70   DYFGALRVMRWIPTVAFGLGLAALIWSVLARGGRSERKLQLALLIPILPFGFAFGLFSAR  129

Query  155  PELFGMTALVAFSIFLTRAHTSRTRVILSTLYGLTMAVLALIHEAIPLEFALGAVLAIIV  214
             +L G  AL AF+I LT   T R  VILS +YG  +AVL L+HEA P  F LGA+ A+ V
Sbjct  130  TDLLGAAALAAFAISLTSVTTGRGTVILSAVYGAALAVLTLMHEATPFLFGLGAIAALTV  189

Query  215  LSKNATGATRRICTALAIGPGTVSVLLLAVVGRRDIADQLCAHIPHGMVENPWAVATTPQ  274
            L++  + +    C+ LA  PG  + L +AV G R I+  LC  +PHG + +P A   T  
Sbjct  190  LARGLSTSAFGWCSVLASLPGLATALAVAVFGERGISGALCQSVPHGPMNHPLAGKPTVS  249

Query  275  RVLDYIFGRVESHADYHDWVCEHVTPWFNLDWITSAKLVAVVGFRALFGAFLLGLLFFVA  334
            ++L     R E   DYHDW+C  + P F+  +  + + V  +G  AL G+ L G+     
Sbjct  250  QILHGF--RYE--VDYHDWMCRAILPLFDQSFGDALRFVRSIGPLALSGSTLYGIGLLAV  305

Query  335  TTSMIRYVSAVPVRTFFAELRGNLALPVLASALLVPLFITAVDWTRWWVMITLDVAIVYI  394
            +  +I   S VP+R F   L    A  VL   L +P+F+T VDW RWW  IT ++ IV+I
Sbjct  306  SMCLIAQASGVPLRRFRDVLLTRKAAVVLGLVLFLPVFLTGVDWIRWWATITYNLGIVFI  365

Query  395  LYAIDRPEIEQPPSRRNVQVFVCVVLVLAVIPTG  428
            LYA  +PE+ +PP+RR+  V      VLA++P G
Sbjct  366  LYATRQPELSEPPTRRSTTVVAVAGTVLALLPIG  399


>gi|167041811|gb|ABZ06553.1| hypothetical protein ALOHA_HF4000093M11ctg1g39 [uncultured marine 
microorganism HF4000_093M11]
Length=503

 Score = 38.9 bits (89),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 53/222 (24%), Positives = 94/222 (43%), Gaps = 24/222 (10%)

Query  73   SYEFGFVRRGLGGELIRMLTGDHFFAGAYTVLWTSITVWLIALAVVVWLILSTGNRSERR  132
            +YE GF+RRGL GE+I  L    FF       +  I      L+++ +L+     R E+ 
Sbjct  40   NYEGGFIRRGLSGEII--LRTSSFFDVQIKFTYFCILS---ILSLLFYLLFFDFLRKEKL  94

Query  133  IMLALLVPVLPFAFSYAIYNPHPELFG------MTALVAFSIFLTRAHTSRTRVILSTLY  186
                L + + P + S+ IYN     FG      +   + F +FL      + + +     
Sbjct  95   NFQNLFIILSPLSISFIIYN-----FGAIGRKEILYFIIFLVFLYLVEILKKKELSIFFL  149

Query  187  GLTMAVLALIHEAIPLEFALGAVLAIIVLSKNATGATRRICTALAIGPGTVSVLLLAVVG  246
             +   ++ L+HE   L F + A L I +   N T       T       ++S  +L V+ 
Sbjct  150  IIFFPLVLLLHEG--LIFFISAFLVIFLFEINKTNKKFIFLTIFIFILISLSTFILMVIF  207

Query  247  RRDIA--DQLCAHIPHGMVENPW---AVAT-TPQRVLDYIFG  282
            + + A  + +C+ +    +E  +   A+AT +    LD +F 
Sbjct  208  KGNTAQVEVICSSLSDYPIEGCFLGSAIATLSSVHTLDSVFS  249


>gi|300870388|ref|YP_003785259.1| hypothetical protein BP951000_0760 [Brachyspira pilosicoli 95/1000]
 gi|300688087|gb|ADK30758.1| conserved hypothetical protein [Brachyspira pilosicoli 95/1000]
Length=635

 Score = 36.6 bits (83),  Expect = 8.3, Method: Compositional matrix adjust.
 Identities = 17/59 (29%), Positives = 33/59 (56%), Gaps = 0/59 (0%)

Query  367  LLVPLFITAVDWTRWWVMITLDVAIVYILYAIDRPEIEQPPSRRNVQVFVCVVLVLAVI  425
            L++P  I    WTR+ V I +++ I YILY + +  I        + + V +V+++++I
Sbjct  189  LIIPFIIFVFSWTRYIVSIPVNMIIFYILYLMIKDSIINYNKVYKINIIVFIVMIMSII  247


>gi|94967830|ref|YP_589878.1| vitamin K epoxide reductase [Candidatus Koribacter versatilis 
Ellin345]
 gi|94549880|gb|ABF39804.1| Vitamin K epoxide reductase [Candidatus Koribacter versatilis 
Ellin345]
Length=553

 Score = 36.6 bits (83),  Expect = 8.3, Method: Compositional matrix adjust.
 Identities = 24/81 (30%), Positives = 48/81 (60%), Gaps = 10/81 (12%)

Query  352  AELRGNLALPVLASALLVPLFITAVD------WTRWWVMITLDVAIVYILYAID--RPEI  403
            ++L   +A  + A+ L+V L++T+++      W  W V   + +A+++IL  ++  +PE 
Sbjct  80   SKLLKRIAFYLSAAGLIVSLYLTSLEAFQIHAWCAWCVAQQIAIALIFILLGVELGKPES  139

Query  404  EQPP-SRRNVQVF-VCVVLVL  422
            + P  ++RNV V  +CVVL +
Sbjct  140  DTPKRAQRNVAVLIICVVLAI  160



Lambda     K      H
   0.330    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 888274778888


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40