BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1501
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
gi|167969311|ref|ZP_02551588.1| hypothetical protein MtubH3_1530... 567 7e-160
gi|15608639|ref|NP_216017.1| hypothetical protein Rv1501 [Mycoba... 566 1e-159
gi|148822723|ref|YP_001287477.1| hypothetical protein TBFG_11532... 564 5e-159
gi|289574185|ref|ZP_06454412.1| conserved hypothetical protein [... 563 7e-159
gi|289447107|ref|ZP_06436851.1| phytanoyl-CoA dioxygenase [Mycob... 517 7e-145
gi|183982327|ref|YP_001850618.1| hypothetical protein MMAR_2314 ... 470 9e-131
gi|330808193|ref|YP_004352655.1| hypothetical protein PSEBR_a145... 134 2e-29
gi|338782302|gb|EGP46677.1| phytanoyl-CoA dioxygenase [Achromoba... 130 2e-28
gi|154253753|ref|YP_001414577.1| phytanoyl-CoA dioxygenase [Parv... 120 2e-25
gi|149276450|ref|ZP_01882594.1| Phytanoyl-CoA dioxygenase [Pedob... 119 5e-25
gi|325103562|ref|YP_004273216.1| Phytanoyl-CoA dioxygenase [Pedo... 117 2e-24
gi|333894123|ref|YP_004467998.1| Phytanoyl-CoA dioxygenase [Alte... 110 2e-22
gi|254515912|ref|ZP_05127972.1| Phytanoyl-CoA dioxygenase superf... 108 7e-22
gi|218460590|ref|ZP_03500681.1| phytanoyl-CoA dioxygenase [Rhizo... 107 1e-21
gi|170722915|ref|YP_001750603.1| phytanoyl-CoA dioxygenase [Pseu... 106 4e-21
gi|94314158|ref|YP_587367.1| putative dioxygenase [Cupriavidus m... 101 1e-19
gi|323139989|ref|ZP_08075005.1| Phytanoyl-CoA dioxygenase [Methy... 100 3e-19
gi|307728819|ref|YP_003906043.1| Phytanoyl-CoA dioxygenase [Burk... 99.4 5e-19
gi|186477055|ref|YP_001858525.1| phytanoyl-CoA dioxygenase [Burk... 90.5 3e-16
gi|116250573|ref|YP_766411.1| deoxygenase [Rhizobium leguminosar... 88.2 1e-15
gi|340628598|ref|YP_004747050.1| hypothetical protein MCAN_36451... 87.0 3e-15
gi|15610769|ref|NP_218150.1| hypothetical protein Rv3633 [Mycoba... 85.9 7e-15
gi|152994862|ref|YP_001339697.1| phytanoyl-CoA dioxygenase [Mari... 85.5 7e-15
gi|306778517|ref|ZP_07416854.1| hypothetical protein TMBG_02169 ... 85.1 1e-14
gi|4895124|gb|AAD32731.1| MmcH [Streptomyces lavendulae] 84.7 2e-14
gi|154251308|ref|YP_001412132.1| phytanoyl-CoA dioxygenase [Parv... 84.3 2e-14
gi|316931574|ref|YP_004106556.1| Phytanoyl-CoA dioxygenase [Rhod... 78.6 1e-12
gi|339477006|gb|EGP92097.1| hypothetical protein MYCGRDRAFT_3510... 77.4 2e-12
gi|192288876|ref|YP_001989481.1| Phytanoyl-CoA dioxygenase [Rhod... 77.0 3e-12
gi|39933518|ref|NP_945794.1| hypothetical protein RPA0441 [Rhodo... 77.0 3e-12
gi|118618777|ref|YP_907109.1| hypothetical protein MUL_3479 [Myc... 76.6 3e-12
gi|41409258|ref|NP_962094.1| hypothetical protein MAP3160 [Mycob... 76.6 4e-12
gi|183981567|ref|YP_001849858.1| hypothetical protein MMAR_1551 ... 76.3 4e-12
gi|336459287|gb|EGO38231.1| protein involved in biosynthesis of ... 76.3 4e-12
gi|255625370|ref|XP_002540619.1| conserved hypothetical protein ... 75.5 8e-12
gi|118467270|ref|YP_883146.1| phytanoyl-CoA dioxygenase (PhyH) f... 74.3 2e-11
gi|254776406|ref|ZP_05217922.1| phytanoyl-CoA dioxygenase (PhyH)... 73.6 3e-11
gi|342860984|ref|ZP_08717633.1| phytanoyl-CoA dioxygenase (PhyH)... 73.2 4e-11
gi|296169237|ref|ZP_06850890.1| phytanoyl-CoA dioxygenase [Mycob... 71.6 1e-10
gi|340522233|gb|EGR52466.1| predicted protein [Trichoderma reese... 70.5 2e-10
gi|318075467|ref|ZP_07982799.1| hypothetical protein SSA3_01792 ... 70.5 2e-10
gi|302519381|ref|ZP_07271723.1| phytanoyl-CoA dioxygenase [Strep... 70.5 3e-10
gi|88706243|ref|ZP_01103950.1| conserved hypothetical protein [C... 70.5 3e-10
gi|154253118|ref|YP_001413942.1| phytanoyl-CoA dioxygenase [Parv... 70.5 3e-10
gi|212539396|ref|XP_002149853.1| conserved hypothetical protein ... 70.1 4e-10
gi|154250668|ref|YP_001411492.1| phytanoyl-CoA dioxygenase [Parv... 69.7 4e-10
gi|311104573|ref|YP_003977426.1| phytanoyl-CoA dioxygenase [Achr... 69.7 4e-10
gi|167578415|ref|ZP_02371289.1| MmcH, putative [Burkholderia tha... 69.7 4e-10
gi|254821154|ref|ZP_05226155.1| phytanoyl-CoA dioxygenase (PhyH)... 69.7 5e-10
gi|339296446|gb|AEJ48557.1| hypothetical protein CCDC5079_3368 [... 69.3 6e-10
>gi|167969311|ref|ZP_02551588.1| hypothetical protein MtubH3_15305 [Mycobacterium tuberculosis
H37Ra]
Length=278
Score = 567 bits (1461), Expect = 7e-160, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%), Gaps = 0/273 (0%)
Query 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA
Sbjct 6 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 65
Query 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 120
RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV
Sbjct 66 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 125
Query 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP
Sbjct 126 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 185
Query 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA
Sbjct 186 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 245
Query 241 RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG
Sbjct 246 RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 278
>gi|15608639|ref|NP_216017.1| hypothetical protein Rv1501 [Mycobacterium tuberculosis H37Rv]
gi|15840965|ref|NP_336002.1| hypothetical protein MT1550 [Mycobacterium tuberculosis CDC1551]
gi|31792698|ref|NP_855191.1| hypothetical protein Mb1539 [Mycobacterium bovis AF2122/97]
73 more sequence titles
Length=273
Score = 566 bits (1459), Expect = 1e-159, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%), Gaps = 0/273 (0%)
Query 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA
Sbjct 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
Query 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 120
RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV
Sbjct 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 120
Query 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP
Sbjct 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
Query 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA
Sbjct 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
Query 241 RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG
Sbjct 241 RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
>gi|148822723|ref|YP_001287477.1| hypothetical protein TBFG_11532 [Mycobacterium tuberculosis F11]
gi|148721250|gb|ABR05875.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
Length=273
Score = 564 bits (1454), Expect = 5e-159, Method: Compositional matrix adjust.
Identities = 272/273 (99%), Positives = 272/273 (99%), Gaps = 0/273 (0%)
Query 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA
Sbjct 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
Query 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 120
RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQN FILPSFPPFSTPDV
Sbjct 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNSFILPSFPPFSTPDV 120
Query 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP
Sbjct 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
Query 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA
Sbjct 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
Query 241 RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG
Sbjct 241 RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
>gi|289574185|ref|ZP_06454412.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339631571|ref|YP_004723213.1| hypothetical protein MAF_15260 [Mycobacterium africanum GM041182]
gi|289538616|gb|EFD43194.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339330927|emb|CCC26598.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=273
Score = 563 bits (1452), Expect = 7e-159, Method: Compositional matrix adjust.
Identities = 272/273 (99%), Positives = 272/273 (99%), Gaps = 0/273 (0%)
Query 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKE LA
Sbjct 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKEGLA 60
Query 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 120
RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV
Sbjct 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 120
Query 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP
Sbjct 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
Query 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA
Sbjct 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
Query 241 RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG
Sbjct 241 RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
>gi|289447107|ref|ZP_06436851.1| phytanoyl-CoA dioxygenase [Mycobacterium tuberculosis CPHL_A]
gi|289420065|gb|EFD17266.1| phytanoyl-CoA dioxygenase [Mycobacterium tuberculosis CPHL_A]
Length=250
Score = 517 bits (1332), Expect = 7e-145, Method: Compositional matrix adjust.
Identities = 250/250 (100%), Positives = 250/250 (100%), Gaps = 0/250 (0%)
Query 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA
Sbjct 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
Query 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 120
RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV
Sbjct 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 120
Query 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP
Sbjct 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
Query 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA
Sbjct 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
Query 241 RTQQLLGWYS 250
RTQQLLGWYS
Sbjct 241 RTQQLLGWYS 250
>gi|183982327|ref|YP_001850618.1| hypothetical protein MMAR_2314 [Mycobacterium marinum M]
gi|183175653|gb|ACC40763.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=273
Score = 470 bits (1210), Expect = 9e-131, Method: Compositional matrix adjust.
Identities = 220/273 (81%), Positives = 248/273 (91%), Gaps = 0/273 (0%)
Query 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
M V+ + + L Q+QDAL+CVGYAVVEDVLD LA TRDRMY VQERIL+EIG+ERL+
Sbjct 1 MTAVECDASPWLVQLQDALHCVGYAVVEDVLDAGFLATTRDRMYLVQERILSEIGQERLS 60
Query 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV 120
AGELGVLRLMMKYDPHFF FLEIPEVL++VDRVLS+TAILHLQNGFILPSFP +TP+V
Sbjct 61 IAGELGVLRLMMKYDPHFFAFLEIPEVLNVVDRVLSDTAILHLQNGFILPSFPSVATPEV 120
Query 121 FQNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
FQNAFHQDFPRVLSGY+ASVN+MFAIDPFTRD GATLVVPG+HQR EKPD +YL RNAV
Sbjct 121 FQNAFHQDFPRVLSGYVASVNVMFAIDPFTRDNGATLVVPGTHQRAEKPDASYLTRNAVA 180
Query 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPA 240
V+C AG++ VFDSTLWHAAG+N SGKDRLAINHQF+RSFFKQQIDYVRALGD V+L+QPA
Sbjct 181 VECPAGAMLVFDSTLWHAAGQNISGKDRLAINHQFSRSFFKQQIDYVRALGDTVILDQPA 240
Query 241 RTQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
RTQQLLGWY+RVVT+LDEYYQPP++RLYRKGQG
Sbjct 241 RTQQLLGWYTRVVTSLDEYYQPPERRLYRKGQG 273
>gi|330808193|ref|YP_004352655.1| hypothetical protein PSEBR_a1456 [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327376301|gb|AEA67651.1| conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length=259
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/264 (33%), Positives = 126/264 (48%), Gaps = 9/264 (3%)
Query 12 LDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGELGVLRLM 71
++ V AL GY + ++ + L R+ + +R + + + E ++
Sbjct 1 MNPVLQALQANGYVCLPSLITGSLLDQLREDLGHAIDRCRQVQLENGITQRTEQTAHHIL 60
Query 72 MKYDPHFFTFLEIPEVLSIVD---RVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQD 128
M+ D F L IVD +L AIL+ G S+ D + H+D
Sbjct 61 MQ-DSSFVELLNRFAEWGIVDILRHMLGGAAILNSFGGL-----NNLSSTDAYVRNVHRD 114
Query 129 FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSL 188
+ + + +D FT D GATL +PGSH +KPD A +AGS+
Sbjct 115 VRSWSAESMQMAQALVLLDDFTVDNGATLFLPGSHAAPDKPDPQVFEEQARKALGSAGSI 174
Query 189 FVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
++FDS +WHAAG N + R + FTRS+FK Q DY RALG+ Q QQLLGW
Sbjct 175 YLFDSRIWHAAGVNRTDLPRRCLTLTFTRSYFKPQFDYCRALGEDFCRSQTPSMQQLLGW 234
Query 249 YSRVVTNLDEYYQPPDKRLYRKGQ 272
Y+R + L E+YQP ++R YRK Q
Sbjct 235 YARTPSTLHEWYQPEEQRFYRKSQ 258
>gi|338782302|gb|EGP46677.1| phytanoyl-CoA dioxygenase [Achromobacter xylosoxidans AXX-A]
Length=261
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/259 (31%), Positives = 136/259 (53%), Gaps = 8/259 (3%)
Query 12 LDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIG-KERLARAGELGVLRL 70
+++ ++L GYA+ + + +AA R+R V+E + + G ++RL R E LR
Sbjct 1 MERAIESLRTFGYAIYDAGFSPSEMAALRERFDAVREMVYQQGGGRDRLTRIDEQHTLRA 60
Query 71 MMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQDFP 130
M+ +D F P++L+I +++ + +L+ QNG I P + + Q +H+D P
Sbjct 61 MLAHDASFLELARHPDILAIARQLVGDYIVLNQQNGVINPG----NGREYNQGKWHRDLP 116
Query 131 --RVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSL 188
+S ++N +F +D FT D GATLV P SH+ P +L + A+ AG
Sbjct 117 YQHFVSSRPLAINALFCVDEFTHDNGATLVAPASHKMEAFPSDEFLRQTALQAVAPAGHF 176
Query 189 FVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
+ D+ +H+ N S +DR A+NH +T +QQID LG A ++ + + LLG+
Sbjct 177 IILDAMTFHSGAVNRSPRDRRAVNHVYTIPMIRQQIDLPAVLG-ADYRKEDSSVRSLLGY 235
Query 249 YSRVVTNLDEYYQPPDKRL 267
V +++EYY ++R+
Sbjct 236 GLEVPRSVEEYYLSREQRV 254
>gi|154253753|ref|YP_001414577.1| phytanoyl-CoA dioxygenase [Parvibaculum lavamentivorans DS-1]
gi|154157703|gb|ABS64920.1| Phytanoyl-CoA dioxygenase [Parvibaculum lavamentivorans DS-1]
Length=274
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/260 (30%), Positives = 130/260 (50%), Gaps = 9/260 (3%)
Query 10 TSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIG-KERLARAGELGVL 68
T++D+ + L +GYAV++ A L ++ + ++ G K+ L + E +
Sbjct 17 TAIDRAIEQLRLLGYAVLDGSYSRAELTQLQEAFCAARRKMEEHFGGKDSLEKIDEHNTI 76
Query 69 RLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQD 128
R+ M Y+ F ++ + R++ + IL+ QNG P ++ Q AFH+D
Sbjct 77 RIPMMYERVFLDLALNQAIIELCRRMIGDYFILNQQNGISNPG----NSTRYNQGAFHRD 132
Query 129 FP--RVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAG 186
P +S ++N +F +D FT + GAT V+PGSH++ P + V + AG
Sbjct 133 LPYQHFVSDRPLAINALFCLDDFTTENGATYVLPGSHKQSAYPSDATVDALKVQIPAPAG 192
Query 187 SLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLL 246
S + D L+H+ G N + ++R A+NH ++ KQQID ALGD + R QLL
Sbjct 193 SFIILDCMLYHSGGVNRTDRERRAVNHVYSIPMLKQQIDLPAALGDTFSDDPGVR--QLL 250
Query 247 GWYSRVVTNLDEYYQPPDKR 266
G+ S V ++ YY+ K+
Sbjct 251 GYDSTVPLDVAAYYRSRTKK 270
>gi|149276450|ref|ZP_01882594.1| Phytanoyl-CoA dioxygenase [Pedobacter sp. BAL39]
gi|149232970|gb|EDM38345.1| Phytanoyl-CoA dioxygenase [Pedobacter sp. BAL39]
Length=267
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/148 (43%), Positives = 83/148 (57%), Gaps = 0/148 (0%)
Query 126 HQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAA 185
H+D V ++ A+D FT D GAT + GSH EKPD Y +A
Sbjct 120 HRDIRSFTGNMKLMVMMLVALDDFTIDNGATYFLSGSHHHEEKPDDEYFYAHADRALAKK 179
Query 186 GSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQL 245
GS+ +FD+ LWHAAGRN + R A+ FTR F KQQ+DY R LG E +Q+
Sbjct 180 GSVILFDANLWHAAGRNHTDLPRRALTMAFTRPFLKQQLDYPRFLGYEYGEELSGVLRQV 239
Query 246 LGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
LG+ +R+ +L EYYQP KR+Y+ GQG
Sbjct 240 LGYNARIPADLQEYYQPVPKRMYQPGQG 267
>gi|325103562|ref|YP_004273216.1| Phytanoyl-CoA dioxygenase [Pedobacter saltans DSM 12145]
gi|324972410|gb|ADY51394.1| Phytanoyl-CoA dioxygenase [Pedobacter saltans DSM 12145]
Length=267
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/270 (28%), Positives = 125/270 (47%), Gaps = 20/270 (7%)
Query 11 SLDQVQDALNCVGYAVVEDVLDEASLAATRDRM---YRVQERILTEIGKERLARAGELGV 67
++ + A++ G+ + E+ ++E + + + Y ++ I + G E G
Sbjct 11 TISDFESAMDQFGWVIYENAVEENFINEIINDLEPAYLLRRAIQIQNGIEENME----GT 66
Query 68 LRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNG-FILPSFP---PFSTPDVFQN 123
L +++ D FLE + + + H NG +IL F F + +
Sbjct 67 LHHLLEKDNFSMPFLE---------QKYCDKEMKHFLNGNYILNGFSGVLNFKNFKAYVH 117
Query 124 AFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQC 183
H+D + ++ ++ +D +T + GAT + GSH +KPD + NA
Sbjct 118 NIHRDIRSFTGNFKIAIQMIVPLDDYTLENGATYFLTGSHHIEDKPDEQFFYMNADRAVS 177
Query 184 AAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQ 243
GS+ +FDS +WHA G N + R A+ FTR FFK Q D+ R LG +
Sbjct 178 KKGSIILFDSNIWHAVGNNNTDNPRRALTLTFTRPFFKPQFDFPRYLGYDFTDYLSPHLK 237
Query 244 QLLGWYSRVVTNLDEYYQPPDKRLYRKGQG 273
Q++G+ SR+ N E+YQPP R+Y+ GQG
Sbjct 238 QVIGYNSRISANFQEFYQPPHLRMYQPGQG 267
>gi|333894123|ref|YP_004467998.1| Phytanoyl-CoA dioxygenase [Alteromonas sp. SN2]
gi|332994141|gb|AEF04196.1| Phytanoyl-CoA dioxygenase [Alteromonas sp. SN2]
Length=255
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/265 (26%), Positives = 132/265 (50%), Gaps = 16/265 (6%)
Query 11 SLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAG--ELGVL 68
+L +++ + G V++D++D +++ R + I ++ L R + G++
Sbjct 3 NLHHLKEEMVDTGVVVIDDIVDTDTVSILR-------AELEAAIEEDSLVRDSVFDAGMV 55
Query 69 RLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVFQNAFHQ 127
M + ++ ++ ++D + + AI++ Q+ + P + + H
Sbjct 56 HNCMLRGEAMCSLIQNKKINDVIDALFTPYAIIYAYQSSSLYPGRGNYGS------RIHV 109
Query 128 DFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGS 187
D PR + YI ++ + A++ FT+D G T +PGSH+ PD ++ NA + C G+
Sbjct 110 DCPRFIPNYITNLGAIIALNDFTQDNGGTYYLPGSHKSESLPDQSFFYENAKQLSCNRGA 169
Query 188 LFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLG 247
L +F+ L HAAG N + R A+ + R + +Q+ D+ R + + + ++ +G
Sbjct 170 LILFNGRLVHAAGVNRTDTARHALTINYCRPYMRQRFDFPRLISTEQLRQFNDIGKRRIG 229
Query 248 WYSRVVTNLDEYYQPPDKRLYRKGQ 272
R+ T+LDE+Y P DKRLY+ GQ
Sbjct 230 MDVRMPTSLDEFYLPADKRLYKPGQ 254
>gi|254515912|ref|ZP_05127972.1| Phytanoyl-CoA dioxygenase superfamily protein [gamma proteobacterium
NOR5-3]
gi|219675634|gb|EED32000.1| Phytanoyl-CoA dioxygenase superfamily protein [gamma proteobacterium
NOR5-3]
Length=256
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/184 (34%), Positives = 98/184 (54%), Gaps = 9/184 (4%)
Query 93 RVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQDFPRVLSGYIASVNIMFAIDPFTRD 152
R+LS T+I++ + S PP ++ + H D PR + GY ++ ++F +D FT +
Sbjct 79 RLLSPTSIIY---AYQSSSAPPGASN--YGGRIHVDSPRFIRGYRTNLGVIFPLDDFTEE 133
Query 153 TGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAIN 212
G TL GSH+R E P + C+AG + VFD+ L HA G N + + R A+
Sbjct 134 NGGTLYCKGSHKREELPQEEEFYERVSVITCSAGDMIVFDARLAHATGVNRTSEARHALT 193
Query 213 HQFTRSFFKQQIDYVRALGDAVVLEQPART---QQLLGWYSRVVTNLDEYYQPPDKRLYR 269
F RS+ +Q+ D+ R + +A A ++LLG R+ +L E+Y P +RLY+
Sbjct 194 INFCRSYMRQRFDFCR-MAEAQQEHIKALNLDGKRLLGMNVRMPVSLSEFYLPESERLYK 252
Query 270 KGQG 273
GQG
Sbjct 253 PGQG 256
>gi|218460590|ref|ZP_03500681.1| phytanoyl-CoA dioxygenase [Rhizobium etli Kim 5]
Length=211
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/209 (33%), Positives = 103/209 (50%), Gaps = 8/209 (3%)
Query 55 GKERLARAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPP 114
G+ RL E +RL M Y+ F + + R+LS+ +L+ QNG P
Sbjct 4 GRARLEAIDEHNTIRLPMLYNKLFLQLAMNDNITELCGRLLSDYFVLNQQNGISNPG--- 60
Query 115 FSTPDVFQNAFHQDFP--RVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHT 172
S Q A+H+D P S ++N ++ ID FT + GAT V+P SH++ P
Sbjct 61 -SAARYNQGAYHRDLPFQHFTSSRPLAINALYCIDDFTTENGATFVIPASHKQEPFPSDA 119
Query 173 YLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGD 232
+ + V AGS V D +H G N + ++R A+NH +T KQQID+ AL +
Sbjct 120 MVNALQLQVPARAGSFIVLDCMTYHTGGVNHTQRERRAVNHVYTIPLLKQQIDFPAALKE 179
Query 233 AVVLEQPARTQQLLGWYSRVVTNLDEYYQ 261
+Q AR +LLG+ + T++ YY+
Sbjct 180 DFTNDQKAR--RLLGYGLSIPTDVQSYYR 206
>gi|170722915|ref|YP_001750603.1| phytanoyl-CoA dioxygenase [Pseudomonas putida W619]
gi|169760918|gb|ACA74234.1| Phytanoyl-CoA dioxygenase [Pseudomonas putida W619]
Length=259
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/252 (30%), Positives = 122/252 (49%), Gaps = 21/252 (8%)
Query 25 AVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGELGVLRLMMKYDPHFFTFLEI 84
A+VE + ++ A R Y+++ I + V L+ ++D F L+
Sbjct 26 AIVEQMREDIHKAYAICRDYQIKNGIDQDTSNT---------VHHLIGQFDS-FLDCLKA 75
Query 85 PEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV--FQNAFHQDFPRVLSGYIASV-N 141
+ + ++R IL+ G I +T D + H+D R SG + + N
Sbjct 76 YPIYAFIERYFGGQFILNSYGGAI-------NTRDSQSYAQRVHRDI-RSFSGDMPLLLN 127
Query 142 IMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLWHAAGR 201
+ +D FT GAT ++ GSH+ KP Y +A AGS+ +F+S +WHA G
Sbjct 128 TLVMLDDFTAANGATWMLSGSHKAEAKPTDDYFMAHAEQAIAPAGSILMFNSNVWHAGGS 187
Query 202 NTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGWYSRVVTNLDEYYQ 261
N + + R ++ F++ F KQQ DY RALG + +Q++G+ +RV LDE+YQ
Sbjct 188 NVTDQVRRSVTPMFSKPFIKQQFDYPRALGYDLGPNLDPMMRQVIGYNARVPATLDEWYQ 247
Query 262 PPDKRLYRKGQG 273
PP +R+Y QG
Sbjct 248 PPARRMYHSNQG 259
>gi|94314158|ref|YP_587367.1| putative dioxygenase [Cupriavidus metallidurans CH34]
gi|93358010|gb|ABF12098.1| hypothetical protein (putative dioxygenase) [Cupriavidus metallidurans
CH34]
Length=259
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/271 (28%), Positives = 124/271 (46%), Gaps = 21/271 (7%)
Query 9 NTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGE---- 64
NT+L + + L G+ VV ++ E + A + ++ + K R
Sbjct 2 NTNLARHEAELESQGWTVVPRLIHEELVGA-------LNHALVPSLNKRDAIRTANGLME 54
Query 65 --LGVLRLMMKYDPHFFTFLEIPEVLS-IVDRVLSETAILHLQNGFILPSFPPFSTPDVF 121
G ++ D + L E L IV IL+ GFI + +
Sbjct 55 NCQGTAHHVLSDDRCYVELLAKFEALDPIVKWFFGGNYILNSYGGFI-------NDGKTY 107
Query 122 QNAFHQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPV 181
+ H+D + +N + +D FT GAT ++ GS + E+P + R+A V
Sbjct 108 AHDVHRDIRFHSNAKRFMLNTLVMLDEFTEPNGATHILSGSQHQPERPSNDTFFRDAARV 167
Query 182 QCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPAR 241
GS+ +FDS +WHAAG NT+ R A+ FT FFK Q+DY R + + V
Sbjct 168 TGERGSVLLFDSRIWHAAGENTTNLPRRALTLTFTCPFFKPQLDYPRLMASSGVSTLTPF 227
Query 242 TQQLLGWYSRVVTNLDEYYQPPDKRLYRKGQ 272
+Q++G+ +RV +L+E+Y P ++R Y++GQ
Sbjct 228 LRQVIGFNARVPASLEEFYVPVEQRFYQRGQ 258
>gi|323139989|ref|ZP_08075005.1| Phytanoyl-CoA dioxygenase [Methylocystis sp. ATCC 49242]
gi|322394755|gb|EFX97340.1| Phytanoyl-CoA dioxygenase [Methylocystis sp. ATCC 49242]
Length=274
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/231 (30%), Positives = 117/231 (51%), Gaps = 16/231 (6%)
Query 8 NNTSLDQVQDALNCVGYAVVEDVL--DEASLAATR-DRMYRVQERILTEIGKERLARAGE 64
NN+ D++ + L G+++V L +E A+ R D +Y Q + E G++ + +
Sbjct 16 NNSEQDRIIEELTRDGFSLVRGCLLKEEVDYASRRLDEIYGAQ---VQEFGEDNIGLIHD 72
Query 65 LGVLRLMMKYDPHFFTFLEIPE-VLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQN 123
++R M+ +D F + E +L IV RV+ L Q G + P + +++Q
Sbjct 73 RHIVRSMLAFDDFFLHRIACNECLLEIVKRVIGNNLSLSSQVGILNPP-----SGELYQT 127
Query 124 AFHQDFPR---VLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVP 180
A+H++ +S IA + +FAI+PF TG T +PGSH P Y+ ++ V
Sbjct 128 AWHRELQYQHFTISRPIA-LQTLFAIEPFNEVTGGTFFIPGSHLHEMFPSEEYVHKHEVQ 186
Query 181 VQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALG 231
+ C G +FD+ +H AG N S R AIN+ +T +QQI++ R +G
Sbjct 187 IICEPGDTVIFDALAYHRAGVNRSNSIRRAINNLYTVPLIQQQINFSRMMG 237
>gi|307728819|ref|YP_003906043.1| Phytanoyl-CoA dioxygenase [Burkholderia sp. CCGE1003]
gi|307583354|gb|ADN56752.1| Phytanoyl-CoA dioxygenase [Burkholderia sp. CCGE1003]
Length=272
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/237 (28%), Positives = 110/237 (47%), Gaps = 18/237 (7%)
Query 5 KVENNTSLDQVQDALNCVGYAVVEDVLDEA---SLAATRDRMYRVQERILTEIGKER-LA 60
++ + ++D+ L GY ++E L L + DR+Y+ Q + E G E+ LA
Sbjct 11 RLASEDAIDEAVAELRVNGYTIIESGLPAGLIDRLKSGIDRIYQTQ---IDEFGDEQALA 67
Query 61 RAGELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPD- 119
+ + R + YDP F + P ++++ R+L +L QNG I + PD
Sbjct 68 SISDTDIARCTLAYDPDFLSVATAPNLMNLAARLLGNEFVLMQQNGII-------NRPDR 120
Query 120 -VFQNAFHQD--FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLAR 176
+Q +H+D + S + N + +D FT + GA+ V+P +H P + R
Sbjct 121 QNYQVKWHRDLSYQHWTSSKTIAFNALLCVDEFTHENGASFVLPATHHIEAFPTDQFATR 180
Query 177 NAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDA 233
+ + AGS V D+ L+H G N S R A+NH F QQ+++ AL A
Sbjct 181 HEKQIAAPAGSFIVLDAMLYHRGGINVSNGVRRAVNHLIGLPFLAQQVNFESALESA 237
>gi|186477055|ref|YP_001858525.1| phytanoyl-CoA dioxygenase [Burkholderia phymatum STM815]
gi|184193514|gb|ACC71479.1| Phytanoyl-CoA dioxygenase [Burkholderia phymatum STM815]
Length=277
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/220 (27%), Positives = 100/220 (46%), Gaps = 12/220 (5%)
Query 12 LDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKER-LARAGELGVLRL 70
D+ L GY V++ L + + + R+ + + E+G E+ LA + + R
Sbjct 23 FDEAVAELRINGYTVIDSGLPAGLIEKLKSGIDRIYQTQIHELGDEQALASINDTDIARC 82
Query 71 MMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDV--FQNAFHQD 128
++ YD F T P ++ + R+L +L QNG I + PD +Q +H+D
Sbjct 83 VLTYDADFLTVATAPNLMKLATRLLGTEFVLMQQNGII-------NRPDRQNYQVKWHRD 135
Query 129 --FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAG 186
+ S + N + +D FT GA+ V+P +H P ++ ++ + AG
Sbjct 136 LSYQHWTSSKTIAFNALLCVDEFTLKNGASFVLPATHHIEAFPTDRFVRQHERQIAAPAG 195
Query 187 SLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDY 226
S V D+ L+H G N S R A+NH F QQ+++
Sbjct 196 SFIVLDAMLYHRGGINVSNDVRRAVNHLIGLPFLAQQVNF 235
>gi|116250573|ref|YP_766411.1| deoxygenase [Rhizobium leguminosarum bv. viciae 3841]
gi|32261043|emb|CAE00194.1| hypothetical protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115255221|emb|CAK06296.1| putative deoxygenase [Rhizobium leguminosarum bv. viciae 3841]
Length=273
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/232 (29%), Positives = 103/232 (45%), Gaps = 8/232 (3%)
Query 6 VENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKE--RLARAG 63
E N D + + + +GY ++ L A L R + TE L++
Sbjct 13 TEANDIYDILAEEVRLLGYTTLDSGLAGAQLDELSQFFNRAELEYDTEATDRGYDLSKIN 72
Query 64 ELGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQN 123
E +RL+ P+F+ + + +++ R+L IL+ NG I Q
Sbjct 73 ERDTIRLLPMLCPNFWEVVFNGPLHALLSRLLGGYFILNQVNGLINRG----HQSKYHQA 128
Query 124 AFHQDFP--RVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPV 181
+H+D P S ++N +FA+D FT + G+T V+PG+H R P + R V
Sbjct 129 QYHRDLPYQHFTSSRPLAINALFALDDFTIENGSTRVIPGTHHREAFPPDEVVRRLETHV 188
Query 182 QCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDA 233
G+ V D ++HA G N + K+R AINH FT +QQ LG+A
Sbjct 189 TVKRGTFIVLDCMVYHAGGTNKTDKNRRAINHVFTIPMLRQQFHIPSVLGEA 240
>gi|340628598|ref|YP_004747050.1| hypothetical protein MCAN_36451 [Mycobacterium canettii CIPT
140010059]
gi|340006788|emb|CCC45976.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=291
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/274 (27%), Positives = 126/274 (46%), Gaps = 30/274 (10%)
Query 9 NTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGK-----ERLARAG 63
++S++++ ++ GY VVEDVLD S+AA R++ + T I + LAR G
Sbjct 4 SSSVERLVGEIDEFGYTVVEDVLDADSVAAYLADTRRLERELPTVIANSTTVVKGLARPG 63
Query 64 ELGVLRL---------MMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPP 114
+ V R+ ++ + + P++L +++ VL +L + + S
Sbjct 64 HVPVDRVDHDWVRIDNLLLHGTRYEALPVHPKLLPVIEGVLGRDCLL----SWCMTSN-- 117
Query 115 FSTPDVFQNAFHQD---FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDH 171
P H D +P N + A+ FT D GAT VVPGSH+ E+P
Sbjct 118 -QLPGAVAQRLHCDDEMYPLPRPHQPLLCNALIALCDFTADNGATQVVPGSHRWPERPSP 176
Query 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALG 231
Y PV+ AG +++ +LWH A N + R A+ F F +QQ++ ++
Sbjct 177 PY--PEGKPVEIKAGDALIWNGSLWHTAAANRTDAPRPALTINFCVGFVRQQVNQQLSIP 234
Query 232 DAVVLEQPARTQQLLGW--YSRVVTNLDEYYQPP 263
+V R Q+L+G+ Y+ + +D ++PP
Sbjct 235 RELVRRFEPRLQELIGYGLYAGKMGRID--WRPP 266
>gi|15610769|ref|NP_218150.1| hypothetical protein Rv3633 [Mycobacterium tuberculosis H37Rv]
gi|15843245|ref|NP_338282.1| hypothetical protein MT3735 [Mycobacterium tuberculosis CDC1551]
gi|31794803|ref|NP_857296.1| hypothetical protein Mb3657 [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=291
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/274 (27%), Positives = 126/274 (46%), Gaps = 30/274 (10%)
Query 9 NTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGK-----ERLARAG 63
++S++++ ++ GY VVEDVLD S+AA R++ + T I + LAR G
Sbjct 4 SSSVERLVGEIDEFGYTVVEDVLDADSVAAYLADTRRLERELPTVIANSTTVVKGLARPG 63
Query 64 ELGVLRL---------MMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPP 114
+ V R+ ++ + + P++L +++ VL +L + + S
Sbjct 64 HVPVDRVDHDWVRIDNLLLHGTRYEALPVHPKLLPVIEGVLGRDCLL----SWCMTSN-- 117
Query 115 FSTPDVFQNAFHQD---FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDH 171
P H D +P N + A+ FT D GAT VVPGSH+ E+P
Sbjct 118 -QLPGAVAQRLHCDDEMYPLPRPHQPLLCNALIALCDFTADNGATQVVPGSHRWPERPSP 176
Query 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALG 231
Y PV+ AG +++ +LWH A N + R A+ F F +QQ++ ++
Sbjct 177 PY--PEGKPVEINAGDALIWNGSLWHTAAANRTDAPRPALTINFCVGFVRQQVNQQLSIP 234
Query 232 DAVVLEQPARTQQLLGW--YSRVVTNLDEYYQPP 263
+V R Q+L+G+ Y+ + +D ++PP
Sbjct 235 RELVRCFEPRLQELIGYGLYAGKMGRID--WRPP 266
>gi|152994862|ref|YP_001339697.1| phytanoyl-CoA dioxygenase [Marinomonas sp. MWYL1]
gi|150835786|gb|ABR69762.1| Phytanoyl-CoA dioxygenase [Marinomonas sp. MWYL1]
Length=267
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/249 (25%), Positives = 117/249 (47%), Gaps = 14/249 (5%)
Query 23 GYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGELGVLRLMMKYDPHFFTFL 82
G+ +++ ++ + A + + L G+E L E +R YDP +
Sbjct 27 GFTILKSNFSDSDIKAISTMVEKTHVEYLDLYGEEYLISIDEHNTVRAPFLYDPIYLKVS 86
Query 83 EIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQNAF-HQDFP--RVLSGYIAS 139
+V+ +V+ +L IL+ QN I P D + F H+D P ++ +
Sbjct 87 FNEKVMEVVEHILKSNFILNQQNIIINPG-----GGDKYNQLFWHRDLPYQHFVTSRPIA 141
Query 140 VNIMFAIDPFTRDTGATLVVPGSHQRIEK-PDHTYLARNAVPVQCAAGSLFVFDSTLWHA 198
+N ++ + FT D G+T V+PGSH +IEK P + +L N + ++G + DS L+H+
Sbjct 142 LNALYCVCDFTFDNGSTQVLPGSH-KIEKFPGNKFLEENKMQFYVSSGDYLLIDSMLYHS 200
Query 199 AGRNTSGKDRLAINHQFTRSFFKQQIDYVRA--LGDAVVLEQPARTQQLLGWYSRVVTNL 256
N + R+ IN+ ++ ++QID+ + L D +E R ++ LG +++
Sbjct 201 GSINKTSDRRIGINNVYSTPIIRRQIDFNSSDFLYDISSIEN--RFKKYLGLQYTTCSSV 258
Query 257 DEYYQPPDK 265
+Y +K
Sbjct 259 SDYLTSREK 267
>gi|306778517|ref|ZP_07416854.1| hypothetical protein TMBG_02169 [Mycobacterium tuberculosis SUMu002]
gi|306786539|ref|ZP_07424861.1| hypothetical protein TMCG_01132 [Mycobacterium tuberculosis SUMu003]
gi|306790906|ref|ZP_07429228.1| hypothetical protein TMDG_01365 [Mycobacterium tuberculosis SUMu004]
13 more sequence titles
Length=291
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/274 (27%), Positives = 126/274 (46%), Gaps = 30/274 (10%)
Query 9 NTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGK-----ERLARAG 63
++S++++ ++ GY VVEDVLD S+AA R++ + T I + LAR G
Sbjct 4 SSSVERLVGEIDEFGYTVVEDVLDADSVAAYLADTRRLERELPTVIANSTTVVKGLARPG 63
Query 64 ELGVLRL---------MMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPP 114
+ V R+ ++ + + P++L +++ VL +L + + S
Sbjct 64 HVPVDRVDHDWVRIDNLLLHGTRYEALPVHPKLLPVIEGVLGRDCLL----SWCMTSN-- 117
Query 115 FSTPDVFQNAFHQD---FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDH 171
P H D +P N + A+ FT D GAT VVPGSH+ E+P
Sbjct 118 -QLPGAVAQRLHCDDEMYPLPRPHQPLLCNALIALCDFTADNGATQVVPGSHRWPERPAP 176
Query 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALG 231
Y PV+ AG +++ +LWH A N + R A+ F F +QQ++ ++
Sbjct 177 PY--PEGKPVEINAGDALIWNGSLWHTAAANRTDAPRPALTINFCVGFVRQQVNQQLSIP 234
Query 232 DAVVLEQPARTQQLLGW--YSRVVTNLDEYYQPP 263
+V R Q+L+G+ Y+ + +D ++PP
Sbjct 235 RELVRCFEPRLQELIGYGLYAGKMGRID--WRPP 266
>gi|4895124|gb|AAD32731.1| MmcH [Streptomyces lavendulae]
Length=254
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/233 (31%), Positives = 105/233 (46%), Gaps = 16/233 (6%)
Query 22 VGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGELGVLRLMMKYDPHFFTF 81
GY ++E L A R R+ V E+ E G L G V L+ K + F
Sbjct 19 AGYCLIECPLPAAVFEKLRGRLLEVAEQE-RENGSAFLYDGGNQRVFSLLNKGE-EFEQN 76
Query 82 LEIPEVLSIVDRVLSETAILHLQNGFILPS-FPPFSTPDVFQNAFHQD--FPRV-LSGYI 137
++ P V+ +++ +L GF+L S + P + H D F R Y
Sbjct 77 VQDPTVMLLMEEILG--------FGFLLSSTHANIAGPGGSRMHLHADQTFARPPWPPYP 128
Query 138 ASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNA--VPVQCAAGSLFVFDSTL 195
N M+ +D FT D GAT +VPGSH +PD+ N V V AGS+ VFD L
Sbjct 129 LVANSMWMLDDFTEDNGATRLVPGSHLLGRQPDYDRGEGNTETVAVCAPAGSVMVFDGRL 188
Query 196 WHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
WH G NT+ + R I + + R + +QQ ++ L + V ++LLG+
Sbjct 189 WHQTGANTTDRPRHGILNYYCRGYVRQQQNFFSGLREDVATRATPELRRLLGY 241
>gi|154251308|ref|YP_001412132.1| phytanoyl-CoA dioxygenase [Parvibaculum lavamentivorans DS-1]
gi|154155258|gb|ABS62475.1| Phytanoyl-CoA dioxygenase [Parvibaculum lavamentivorans DS-1]
Length=265
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/256 (28%), Positives = 108/256 (43%), Gaps = 24/256 (9%)
Query 5 KVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGE 64
K+ S+ + + L G ++EDVLD +A R + R E
Sbjct 7 KLPRARSVAEAKQQLTEHGLTIMEDVLDAEGIARVRAALKRGIEADNAN----------- 55
Query 65 LGVLRLMMKYDP-----HFFTFLEIPEVL-SIVDRVLSETAILHLQNG-FILPSFPP-FS 116
GV +DP F + +V +V + + +L +G F+L +F +
Sbjct 56 -GVQLHGFSFDPDTLNTRVFNLIGKDQVFRDLVQHPAAVELVRYLLDGPFLLSNFSANVT 114
Query 117 TPDVFQNAFHQD---FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTY 173
P H D P Y ++N+ +A+D FT + GAT VPGSH + P
Sbjct 115 APGSGAMGMHADQGYVPAPWPSYPLAINVAWALDDFTVENGATRFVPGSHLKDHGPGKAS 174
Query 174 LARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKD-RLAINHQFTRSFFKQQIDYVRALGD 232
VP+ C AGS+FV D +WH G NTSG D R + + R F + Q ++ L
Sbjct 175 ERAQTVPIICKAGSIFVMDGRVWHQTGPNTSGGDTRAGLFAYYVRPFIRPQWNWYLTLAP 234
Query 233 AVVLEQPARTQQLLGW 248
VV +++LG+
Sbjct 235 EVVRGASPLLREMLGY 250
>gi|316931574|ref|YP_004106556.1| Phytanoyl-CoA dioxygenase [Rhodopseudomonas palustris DX-1]
gi|315599288|gb|ADU41823.1| Phytanoyl-CoA dioxygenase [Rhodopseudomonas palustris DX-1]
Length=282
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/229 (28%), Positives = 99/229 (44%), Gaps = 12/229 (5%)
Query 23 GYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGELGVLRLMMKYDPHFFTFL 82
GY V+E D A +AA + + R++ + K L V L+ YD F+
Sbjct 18 GYTVIERAADPALVAALIEAVERIERDHQLDCAKTSFEGFKTLRVNNLLT-YDEVFWQVP 76
Query 83 EIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQD---FPRVLSGYIAS 139
VL IV+ VL + +L +L P H+D P +
Sbjct 77 LHGSVLPIVEAVLDKECLLSSFCSLVL-------GPGQEAQPIHEDTQLIPLPRPHIPIT 129
Query 140 VNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLWHAA 199
+N ++A+ FT GAT ++PGSH+ P + +A+ AGS+ +FDS LWH
Sbjct 130 LNAIWALSDFTATNGATRIIPGSHKNETSPVYGQ-DYDAITATMPAGSVMLFDSALWHGG 188
Query 200 GRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
G NTS R A + + + +QQ + + + P R Q+L G+
Sbjct 189 GPNTSEARRFAFSCAYCWGWMRQQENLQLGIPREIAQRFPRRLQELCGY 237
>gi|339477006|gb|EGP92097.1| hypothetical protein MYCGRDRAFT_35104 [Mycosphaerella graminicola
IPO323]
Length=281
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/254 (27%), Positives = 115/254 (46%), Gaps = 21/254 (8%)
Query 1 MIPVKVENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLA 60
+I + + LD+ + L G+AVV DVL A R+++ +E + R+A
Sbjct 4 LITDTAADASKLDEAKQRLLTEGWAVVPDVLTRDQSAEVLSRLWQAKEASEARGDRTRMA 63
Query 61 R--AGELGV-LRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPP-FS 116
E + + +M+ D F + P + +V VL E FI+ +F +
Sbjct 64 HLDPNESNIRIFYLMELDKIFRDLISHPTAVEMVKAVLGE--------DFIISNFTANIA 115
Query 117 TPDVFQNAFHQDFPRVLSGYIAS---VNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTY 173
P A H D V+ S +N ++ + ++ GATL +PGS++ + + D
Sbjct 116 RPGSSSMALHSDQSIVMPAPWQSTWALNCIWCLTDVYKENGATLYIPGSNKWMNREDIPG 175
Query 174 LA-RNAVPVQCAAGSLFVFDSTLWHAAGRN-TSGKDRLAINHQFTRSFFKQQIDYVRALG 231
A R P + AGS+ + D +WH +G N T +DR + +T SF +QQ+++ L
Sbjct 176 DAPRLLRPFEAKAGSIILMDGRVWHTSGSNVTRDQDRALLFGYYTASFLRQQVNWTAKLS 235
Query 232 ----DAVVLEQPAR 241
D++ E AR
Sbjct 236 QDIQDSLSEEMKAR 249
>gi|192288876|ref|YP_001989481.1| Phytanoyl-CoA dioxygenase [Rhodopseudomonas palustris TIE-1]
gi|192282625|gb|ACE99005.1| Phytanoyl-CoA dioxygenase [Rhodopseudomonas palustris TIE-1]
Length=282
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/231 (28%), Positives = 103/231 (45%), Gaps = 16/231 (6%)
Query 23 GYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGELGVLRL--MMKYDPHFFT 80
GY V+E D A +AA + R++ ++G + + G LR+ ++ YD F+
Sbjct 18 GYTVIERAADPALVAALIGAVERIERD--HQLGCAKTSFEG-FKTLRVNNLLTYDEVFWD 74
Query 81 FLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQD---FPRVLSGYI 137
VL IV+ VL + +L +L P H+D P
Sbjct 75 VPLHSSVLPIVEAVLDKECLLSSFCSLVL-------GPGQEAQPIHEDTQLIPLPRPHIP 127
Query 138 ASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLWH 197
++N ++A+ FT GAT ++PGSH+ P + +AV AGS+ +FDS LWH
Sbjct 128 ITLNAIWALSDFTATNGATRIIPGSHKYATSPVYGQ-DYDAVTATMPAGSVMLFDSALWH 186
Query 198 AAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
G N+S R A + + + +QQ + + + P R Q+L G+
Sbjct 187 GGGPNSSDARRFAFSCAYCWGWMRQQENLQLGIPREIAQRFPRRLQELCGY 237
>gi|39933518|ref|NP_945794.1| hypothetical protein RPA0441 [Rhodopseudomonas palustris CGA009]
gi|39647364|emb|CAE25885.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length=282
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/231 (28%), Positives = 103/231 (45%), Gaps = 16/231 (6%)
Query 23 GYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGELGVLRL--MMKYDPHFFT 80
GY V+E D A +AA + R++ ++G + + G LR+ ++ YD F+
Sbjct 18 GYTVIERAADPALVAALIGAVERIERD--HQLGCAKTSFEG-FKTLRVNNLLTYDEVFWE 74
Query 81 FLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQD---FPRVLSGYI 137
VL +V+ VL + +L +L P H+D P
Sbjct 75 VPLHSSVLPVVEAVLDKECLLSSFCSLVL-------GPGQEAQPIHEDTQLIPLPRPHIP 127
Query 138 ASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLWH 197
++N ++A+ FT GAT ++PGSH+ P + +AV AGS+ +FDS LWH
Sbjct 128 ITLNAIWALSDFTATNGATRIIPGSHKYETSPVYGQ-DYDAVTATMPAGSVMLFDSALWH 186
Query 198 AAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
G NTS R A + + + +QQ + + + P R Q+L G+
Sbjct 187 GGGPNTSEARRFAFSCAYCWGWMRQQENLQLGIPREIAQRFPRRLQELCGY 237
>gi|118618777|ref|YP_907109.1| hypothetical protein MUL_3479 [Mycobacterium ulcerans Agy99]
gi|118570887|gb|ABL05638.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=282
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/172 (34%), Positives = 83/172 (49%), Gaps = 22/172 (12%)
Query 85 PEVLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVFQNAFHQD----FPRVLSGYIAS 139
P VL+++DR+L +L LQ ILP + Q H D PR + A+
Sbjct 103 PRVLAVLDRILMPNYLLSALQAINILPG-------EDAQLPHHDDGFYPIPRPRAPLAAA 155
Query 140 VNIMFAIDPFTRDTGATLVVPGSHQ---RIEKPDHTYLARNAVPVQCAAGSLFVFDSTLW 196
++AID FT D GAT+V+PGSH+ R PD L PV AGS F TLW
Sbjct 156 T--IWAIDDFTADNGATVVIPGSHRWGRRPPGPDDQVL-----PVVMPAGSCVFFVGTLW 208
Query 197 HAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
H G NTS +RLA+ Q+ + + Y+ ++ + +++LG+
Sbjct 209 HGGGANTSTSERLAVTAQYCEPWLRPMEAYILSISREIARAVSDDIRRMLGY 260
>gi|41409258|ref|NP_962094.1| hypothetical protein MAP3160 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398078|gb|AAS05708.1| hypothetical protein MAP_3160 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=277
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/149 (36%), Positives = 77/149 (52%), Gaps = 22/149 (14%)
Query 81 FLEIPEVLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVFQNAFHQD----FPRVLSG 135
++ P VL+++DR+L +L LQ I P + Q A H D PR +
Sbjct 91 LVDHPRVLAVLDRLLMPNYLLSALQAINIQPG-------EAAQLAHHDDGFYPVPRPRAP 143
Query 136 YIASVNIMFAIDPFTRDTGATLVVPGSH---QRIEKPDHTYLARNAVPVQCAAGSLFVFD 192
A+ ++AID FT D GAT++ PGSH +R PD A+PV AGS +F
Sbjct 144 LAAAT--IWAIDDFTADNGATVLYPGSHRWGKRRPGPDD-----EAIPVVMPAGSCVLFV 196
Query 193 STLWHAAGRNTSGKDRLAINHQFTRSFFK 221
TLWH G NT+ +DRLA+ Q+ + + +
Sbjct 197 GTLWHGGGANTTDRDRLAVTAQYCQPWLR 225
>gi|183981567|ref|YP_001849858.1| hypothetical protein MMAR_1551 [Mycobacterium marinum M]
gi|183174893|gb|ACC40003.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=287
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/172 (34%), Positives = 83/172 (49%), Gaps = 22/172 (12%)
Query 85 PEVLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVFQNAFHQD----FPRVLSGYIAS 139
P VL+++DR+L +L LQ ILP + Q H D PR + A+
Sbjct 105 PRVLAVLDRILMPNYLLSALQAINILPG-------EDAQLPHHDDGFYPIPRPRAPLAAA 157
Query 140 VNIMFAIDPFTRDTGATLVVPGSHQ---RIEKPDHTYLARNAVPVQCAAGSLFVFDSTLW 196
++AID FT D GAT+V+PGSH+ R PD L PV +AGS F TLW
Sbjct 158 T--IWAIDDFTADNGATVVIPGSHRWGRRPPGPDDQVL-----PVVMSAGSCVFFVGTLW 210
Query 197 HAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
H G NTS +RLA+ Q+ + + Y ++ + +++LG+
Sbjct 211 HGGGANTSTSERLAVTAQYCEPWLRPMEAYTLSISREIARAVSDDIRRMLGY 262
>gi|336459287|gb|EGO38231.1| protein involved in biosynthesis of mitomycin antibiotics/polyketide
fumonisin [Mycobacterium avium subsp. paratuberculosis
S397]
Length=287
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/149 (36%), Positives = 77/149 (52%), Gaps = 22/149 (14%)
Query 81 FLEIPEVLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVFQNAFHQD----FPRVLSG 135
++ P VL+++DR+L +L LQ I P + Q A H D PR +
Sbjct 101 LVDHPRVLAVLDRLLMPNYLLSALQAINIQPG-------EAAQLAHHDDGFYAVPRPRAP 153
Query 136 YIASVNIMFAIDPFTRDTGATLVVPGSH---QRIEKPDHTYLARNAVPVQCAAGSLFVFD 192
A+ ++AID FT D GAT++ PGSH +R PD A+PV AGS +F
Sbjct 154 LAAAT--IWAIDDFTADNGATVLYPGSHRWGKRRPGPDD-----EAIPVVMPAGSCVLFV 206
Query 193 STLWHAAGRNTSGKDRLAINHQFTRSFFK 221
TLWH G NT+ +DRLA+ Q+ + + +
Sbjct 207 GTLWHGGGANTTDRDRLAVTAQYCQPWLR 235
>gi|255625370|ref|XP_002540619.1| conserved hypothetical protein [Ricinus communis]
gi|223494675|gb|EEF21764.1| conserved hypothetical protein [Ricinus communis]
Length=97
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/86 (40%), Positives = 51/86 (60%), Gaps = 0/86 (0%)
Query 146 IDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSG 205
+D FT G+T ++ GSH+ EKP Y ++A AGS+ +F+S +WHA G N +
Sbjct 2 LDDFTPHNGSTWMLSGSHKYAEKPSDDYFKQHAEQAIGPAGSILLFNSNVWHAGGNNETD 61
Query 206 KDRLAINHQFTRSFFKQQIDYVRALG 231
R ++ F++ F KQQ DY RA+G
Sbjct 62 LQRRSVTPMFSKPFMKQQFDYPRAMG 87
>gi|118467270|ref|YP_883146.1| phytanoyl-CoA dioxygenase (PhyH) family protein [Mycobacterium
avium 104]
gi|118168557|gb|ABK69454.1| phytanoyl-CoA dioxygenase (PhyH) family protein [Mycobacterium
avium 104]
Length=287
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/149 (35%), Positives = 76/149 (52%), Gaps = 22/149 (14%)
Query 81 FLEIPEVLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVFQNAFHQD----FPRVLSG 135
++ P VL+++DR+L +L LQ I P + Q A H D PR +
Sbjct 101 LVDHPRVLAVLDRLLMPNYLLSALQAINIQPG-------EAAQLAHHDDGFYPVPRPRAP 153
Query 136 YIASVNIMFAIDPFTRDTGATLVVPGSH---QRIEKPDHTYLARNAVPVQCAAGSLFVFD 192
A+ ++AID FT D GAT++ PGSH +R PD A+PV GS +F
Sbjct 154 LAAAT--IWAIDDFTADNGATVLYPGSHRWGKRRPGPDD-----EAIPVVMPVGSCVLFV 206
Query 193 STLWHAAGRNTSGKDRLAINHQFTRSFFK 221
TLWH G NT+ +DRLA+ Q+ + + +
Sbjct 207 GTLWHGGGANTTDRDRLAVTAQYCQPWLR 235
>gi|254776406|ref|ZP_05217922.1| phytanoyl-CoA dioxygenase (PhyH) family protein [Mycobacterium
avium subsp. avium ATCC 25291]
Length=287
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/143 (37%), Positives = 74/143 (52%), Gaps = 22/143 (15%)
Query 87 VLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVFQNAFHQD----FPRVLSGYIASVN 141
VL+++DR+L +L LQ I P + Q A H D PR + A+
Sbjct 107 VLAVLDRLLMPNYLLSALQAINIQPG-------EAAQLAHHDDGFYPVPRPRAPLAAAT- 158
Query 142 IMFAIDPFTRDTGATLVVPGSH---QRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLWHA 198
++AID FT D GAT++ PGSH +R PD A+PV AGS +F TLWH
Sbjct 159 -IWAIDEFTADNGATVLYPGSHRWGKRRPGPDD-----EAIPVVMPAGSCVLFVGTLWHG 212
Query 199 AGRNTSGKDRLAINHQFTRSFFK 221
G NT+ +DRLA+ Q+ + + +
Sbjct 213 GGANTTDRDRLAVTAQYCQPWLR 235
>gi|342860984|ref|ZP_08717633.1| phytanoyl-CoA dioxygenase (PhyH) family protein [Mycobacterium
colombiense CECT 3035]
gi|342131428|gb|EGT84698.1| phytanoyl-CoA dioxygenase (PhyH) family protein [Mycobacterium
colombiense CECT 3035]
Length=289
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/262 (28%), Positives = 113/262 (44%), Gaps = 41/262 (15%)
Query 22 VGYAVVEDVLDEASLAATRDRMYRVQERILT--------EIGKERLARAGE--------- 64
G + V+ + EA +AA Y + E +L+ E+ + L G
Sbjct 27 TGGSAVDSAIAEADMAALDRDGYVIWENLLSAEQCSQIREVVRPWLGHTGRNSFEGLRTQ 86
Query 65 --LGVLRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVF 121
VL DP ++ P VL+ +DR+L +L LQ I P +
Sbjct 87 RIYSVLSRTRVCDP----LVDDPRVLAALDRLLMPNYLLSALQAINIQPG-------EAA 135
Query 122 QNAFHQD----FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARN 177
Q A H D PR A+ ++AID FT D GAT+V PGSH+ ++ A
Sbjct 136 QLAHHDDGFYPIPRPREPLAAAT--IWAIDDFTADNGATVVYPGSHRWGKR--RPGPADQ 191
Query 178 AVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLE 237
A+PV AGS F TLWH G N + ++RLA+ Q+ + + + Y ++ +
Sbjct 192 ALPVVMPAGSCVFFVGTLWHGGGANNTDRERLAVTAQYCQPWLRPMEAYTLSISRDIARA 251
Query 238 QPARTQQLLGW--YSRVVTNLD 257
+++LG+ + V N+D
Sbjct 252 VSDDMRRMLGYSIHPPFVGNVD 273
>gi|296169237|ref|ZP_06850890.1| phytanoyl-CoA dioxygenase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896135|gb|EFG75802.1| phytanoyl-CoA dioxygenase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=287
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/219 (31%), Positives = 99/219 (46%), Gaps = 31/219 (14%)
Query 23 GYAVVEDVLDEASLAATRDRMYRVQERILT--------EIGKERLARAG--ELGVLRLMM 72
G + V+ + EA +AA Y + E +LT E+ + L G LR
Sbjct 28 GGSAVDGAIVEADMAALDRDGYVIWEGLLTPEECDQIREVVRPWLGHTGRNSFEGLRTQR 87
Query 73 KYDPHFFT-----FLEIPEVLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVFQNAFH 126
Y T ++ P VL+++DR+L +L LQ I P + Q A H
Sbjct 88 IYSLLSRTRVCDGIVDNPRVLAVLDRLLMPNYLLSALQAINIQPG-------EAAQLAHH 140
Query 127 QD----FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQ 182
D PR A+ ++AID FT D GAT++ PGSH+ ++ A+PV
Sbjct 141 DDGFYPVPRPRDPLAAAT--IWAIDDFTADNGATVLYPGSHRWGKR--RPGPGDQAMPVV 196
Query 183 CAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFK 221
AGS F TLWH G N++ +DRLAI Q+ + + +
Sbjct 197 MPAGSCVFFVGTLWHGGGANSTDRDRLAITAQYCQPWLR 235
>gi|340522233|gb|EGR52466.1| predicted protein [Trichoderma reesei QM6a]
Length=312
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/111 (36%), Positives = 59/111 (54%), Gaps = 10/111 (9%)
Query 141 NIMFAIDPFTRDTGATLVVPGSH----QRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLW 196
+M A+D +T GAT++VP SH +R+ KP+ A+PV AGS+ F S LW
Sbjct 168 GVMIALDDYTATNGATVIVPDSHLWDSRRVPKPEE------AIPVIMPAGSILYFVSLLW 221
Query 197 HAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLG 247
H G N S K RLA+ Q+ + + + + + A+ + E P R +LG
Sbjct 222 HGGGANRSDKSRLALTAQYCQPWIRPMENLILAVDWEKLDEMPPRLVDMLG 272
>gi|318075467|ref|ZP_07982799.1| hypothetical protein SSA3_01792 [Streptomyces sp. SA3_actF]
Length=296
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/258 (27%), Positives = 112/258 (44%), Gaps = 23/258 (8%)
Query 6 VENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRM-YRVQERILTEIGKERLARAGE 64
V +T LD+V L G +VE+ +D A+LA R+ + ++ +E G + +
Sbjct 10 VTPDTPLDEVVGILERQGAVIVEEFVDPATLAGLREDLGLGLETAGYSESGYD----GKK 65
Query 65 LGVLRLMMKYDPHFFTFLEI-PEVLSIVDRVLSETAILHLQNGFILPSFPP-----FST- 117
L + P T + + P+ L R+L + H+ G I P F+
Sbjct 66 TKRLSSLFHRSPRHMTEVVLQPQFLGAARRLLQQPT--HMWIGKIRMEVTPSVQVSFTQA 123
Query 118 ----PDVFQNAFHQDFPRVL---SGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPD 170
P + H+D L G + +M A++ FT GATLV+PGSH ++
Sbjct 124 IRIDPGQGRQPLHRDDAMHLWRHPGPPCRLQLMLALNDFTSANGATLVIPGSHHWDDERA 183
Query 171 HTYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRAL 230
TY AVP AGS ++ ++H G NT+ R +++ +Q+ + A+
Sbjct 184 PTYA--EAVPAVMPAGSALLWPGGVYHGGGANTTDSPRYSLSVALDLGNLRQEENQYLAV 241
Query 231 GDAVVLEQPARTQQLLGW 248
V+ P Q+LLGW
Sbjct 242 PRETVMTLPEEVQRLLGW 259
>gi|302519381|ref|ZP_07271723.1| phytanoyl-CoA dioxygenase [Streptomyces sp. SPB78]
gi|318056442|ref|ZP_07975165.1| hypothetical protein SSA3_00762 [Streptomyces sp. SA3_actG]
gi|333026791|ref|ZP_08454855.1| putative phytanoyl-CoA dioxygenase [Streptomyces sp. Tu6071]
gi|302428276|gb|EFL00092.1| phytanoyl-CoA dioxygenase [Streptomyces sp. SPB78]
gi|332746643|gb|EGJ77084.1| putative phytanoyl-CoA dioxygenase [Streptomyces sp. Tu6071]
Length=293
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/258 (27%), Positives = 112/258 (44%), Gaps = 23/258 (8%)
Query 6 VENNTSLDQVQDALNCVGYAVVEDVLDEASLAATRDRM-YRVQERILTEIGKERLARAGE 64
V +T LD+V L G +VE+ +D A+LA R+ + ++ +E G + +
Sbjct 7 VTPDTPLDEVVGILERQGAVIVEEFVDPATLAGLREDLGLGLETAGYSESGYD----GKK 62
Query 65 LGVLRLMMKYDPHFFTFLEI-PEVLSIVDRVLSETAILHLQNGFILPSFPP-----FST- 117
L + P T + + P+ L R+L + H+ G I P F+
Sbjct 63 TKRLSSLFHRSPRHMTEVVLQPQFLGAARRLLQQPT--HMWIGKIRMEVTPSVQVSFTQA 120
Query 118 ----PDVFQNAFHQDFPRVL---SGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPD 170
P + H+D L G + +M A++ FT GATLV+PGSH ++
Sbjct 121 IRIDPGQGRQPLHRDDAMHLWRHPGPPCRLQLMLALNDFTSANGATLVIPGSHHWDDERA 180
Query 171 HTYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRAL 230
TY AVP AGS ++ ++H G NT+ R +++ +Q+ + A+
Sbjct 181 PTYA--EAVPAVMPAGSALLWPGGVYHGGGANTTDSPRYSLSVALDLGNLRQEENQYLAV 238
Query 231 GDAVVLEQPARTQQLLGW 248
V+ P Q+LLGW
Sbjct 239 PRETVMTLPEEVQRLLGW 256
>gi|88706243|ref|ZP_01103950.1| conserved hypothetical protein [Congregibacter litoralis KT71]
gi|88699637|gb|EAQ96749.1| conserved hypothetical protein [Congregibacter litoralis KT71]
Length=315
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/174 (32%), Positives = 79/174 (46%), Gaps = 17/174 (9%)
Query 81 FLEIPEVLSIVDRVLSETAIL-HLQNGFILPSFP--PFSTPDVFQNAFHQDFPRVLSGYI 137
F+ P +L+ +DR+L +L Q IL P P T D F +P +
Sbjct 122 FIVHPLILAHLDRLLKPNYLLSQAQVINILSGSPAQPLHTDDGF-------YPWPSPRPV 174
Query 138 ASVNIMFAIDPFTRDTGATLVVPGSHQRIEK---PDHTYLARNAVPVQCAAGSLFVFDST 194
SV +FAID FT D GAT+ +PGSH E D + +P AGS +F
Sbjct 175 LSVATVFAIDDFTEDNGATVAIPGSHLWGEGRFPTDSDPRVKAVMP----AGSCILFLGN 230
Query 195 LWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
LWH G N SG+ R+A Q+ + + Q +Y ++ ++LLG+
Sbjct 231 LWHGGGENYSGESRMAFTGQYCEPYLRTQENYFLSVSKDTAAGVSEDMRRLLGY 284
>gi|154253118|ref|YP_001413942.1| phytanoyl-CoA dioxygenase [Parvibaculum lavamentivorans DS-1]
gi|154157068|gb|ABS64285.1| Phytanoyl-CoA dioxygenase [Parvibaculum lavamentivorans DS-1]
Length=269
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/130 (30%), Positives = 69/130 (54%), Gaps = 5/130 (3%)
Query 140 VNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLWHAA 199
N M+A+ FT + GAT ++PG+H+ P++ +++P + GS+ ++ +LWH
Sbjct 129 CNSMWALTDFTEENGATRIIPGTHKWDRSPEYG-THYDSIPAEMPKGSVLIWHGSLWHGG 187
Query 200 GRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW--YSRVVTNLD 257
G N SG R+ I + F +QQ + L +V R Q+L G+ Y ++ ++D
Sbjct 188 GANKSGARRVGIAMNYCAGFIRQQENQQLGLPLDLVKTFEPRLQELCGFGTYMNLIGHID 247
Query 258 EYYQPPDKRL 267
+ + P +RL
Sbjct 248 K--KTPAQRL 255
>gi|212539396|ref|XP_002149853.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
gi|210067152|gb|EEA21244.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
Length=303
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/177 (27%), Positives = 87/177 (50%), Gaps = 18/177 (10%)
Query 78 FFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFS--TPDVFQNAFHQD----FPR 131
F F+ P+VL++ D L G+++ +F S + + Q H D PR
Sbjct 102 FDKFVSHPDVLALNDYFLDP--------GYLINAFHSISIQSGEKHQILHHDDGHVTVPR 153
Query 132 VLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVF 191
+ + +M A+D FT G+T+VVP SH + + A P+ +GS+ F
Sbjct 154 PHAPF--GTGVMVALDAFTETNGSTVVVPKSH--LWNSNRWPAQNEAFPIVMESGSMVYF 209
Query 192 DSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
STLWH G N SG++R+++N Q+ + + + +++ A+ + + P + ++G+
Sbjct 210 LSTLWHGGGENNSGEERISLNMQYCQPWIRPFENHILAVSWEKLSQIPPKIVDMMGY 266
>gi|154250668|ref|YP_001411492.1| phytanoyl-CoA dioxygenase [Parvibaculum lavamentivorans DS-1]
gi|154154618|gb|ABS61835.1| Phytanoyl-CoA dioxygenase [Parvibaculum lavamentivorans DS-1]
Length=315
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/232 (25%), Positives = 98/232 (43%), Gaps = 18/232 (7%)
Query 23 GYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGELGVLRLMMKYDPHFFTFL 82
GY + E+V++ ++ R+ + RV+ + + L+ H TF
Sbjct 51 GYVIFENVIEPELVSEIREELLRVERDNNMGFRDTDFEGKQTVRIYNLLA----HGPTFW 106
Query 83 EIP---EVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQD---FPRVLSGY 136
+IP L ++VL E + + L P H D P
Sbjct 107 KIPIHEATLPFAEKVLDEELQVSSVSSITL-------CPGQGAQPLHADDQLIPVPKPHQ 159
Query 137 IASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLW 196
++N ++AI FT + GAT +VPGSH+ PD+ + + V + AGS+ + +LW
Sbjct 160 PFTLNCVWAISDFTEENGATRLVPGSHKASGMPDYD-MEMDTVAGEMPAGSVLFWHGSLW 218
Query 197 HAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW 248
HA G N S + R + + + F +QQ + + + P R Q+L G+
Sbjct 219 HAGGNNRSKERRFCVANYYCAGFIRQQENQQLGIPLEEARKFPRRLQELCGY 270
>gi|311104573|ref|YP_003977426.1| phytanoyl-CoA dioxygenase [Achromobacter xylosoxidans A8]
gi|310759262|gb|ADP14711.1| phytanoyl-CoA dioxygenase PhyH family protein 3 [Achromobacter
xylosoxidans A8]
Length=282
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/243 (26%), Positives = 106/243 (44%), Gaps = 17/243 (6%)
Query 12 LDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGKERLARAGELGV-LRL 70
LD+ A G+ V+ ++ ++ ++ + R++ +G + + G V +
Sbjct 7 LDERIAAFERDGFVVLPGIIPPEQVSQLQEALIRIEAE--HNLGYAQTSFEGRKTVRINN 64
Query 71 MMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQD-- 128
++ YDP F+ PEVL++ +R+L +L P H+D
Sbjct 65 LLVYDPCFWDVPLQPEVLALAERLLDRELLLSSLCSLT-------LAPGQGAQPLHEDTQ 117
Query 129 ---FPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAA 185
PR +VN ++A+ FT + GAT +VPGSH+ P + A
Sbjct 118 QLALPRPRPPL--AVNAIWALSDFTAENGATHIVPGSHRYDSSPPYGAQDIETAQATMKA 175
Query 186 GSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQL 245
GS+ +FDS LWH G N S R A++ + + +QQ + + +V P R Q+L
Sbjct 176 GSVMLFDSALWHKGGANNSNARRYALSCYYCAGWIRQQENLQLGIPADMVRRFPRRLQEL 235
Query 246 LGW 248
G+
Sbjct 236 CGY 238
>gi|167578415|ref|ZP_02371289.1| MmcH, putative [Burkholderia thailandensis TXDOH]
Length=256
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/246 (29%), Positives = 108/246 (44%), Gaps = 28/246 (11%)
Query 12 LDQVQDALNCVGYAVVEDVLDEASLAATRDRMYRVQERILTEIGK-ER---LARAGELGV 67
+D V + + G+ V+E +L R+ YRV+ ILT++ + ER L +G +
Sbjct 17 IDNVLEQVRETGFCVIESLL-------PREFTYRVRG-ILTKLQRIERHRNLQPSGHQRI 68
Query 68 LRLMMKYDPHFFTFLEIPEVLSIVDRVLSETAILHLQNGFILPSFPPFSTPDVFQNAFHQ 127
L L++K D F L P VL+I R L + + L P + +H
Sbjct 69 LHLLIK-DAIFSELLCHPLVLAIWRRQLGDDMVCSTMTANAL-------LPGSTEQYWHA 120
Query 128 DFP-----RVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTY-LARNAVPV 181
D+P + + S +++ ID FT + G T + GSH+R PD +A +
Sbjct 121 DYPYWTMQQPYPVFPLSGQVIWMIDAFTEENGGTAGIAGSHRRGHLPDMGRDWCDDATIL 180
Query 182 QCAAGSLFVFDSTLWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPAR 241
+ GS + D WH + N S + R A+ + RS+ Q D L A + E
Sbjct 181 TGSPGSAVIADGAWWHTSRPNRSRRTRYAVLASYIRSYCVTQEDMSMQL--AAIPEPSPL 238
Query 242 TQQLLG 247
QQLLG
Sbjct 239 VQQLLG 244
>gi|254821154|ref|ZP_05226155.1| phytanoyl-CoA dioxygenase (PhyH) family protein [Mycobacterium
intracellulare ATCC 13950]
Length=287
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/185 (31%), Positives = 88/185 (48%), Gaps = 20/185 (10%)
Query 81 FLEIPEVLSIVDRVLSETAILH-LQNGFILPSFPPFSTPDVFQNAFHQD----FPRVLSG 135
++ P VL+ +DR+L +L LQ I P + Q A H D PR +
Sbjct 101 LVDHPRVLAALDRLLMPNYLLSALQAINIQPG-------EAAQLAHHDDGFYPIPRPRAP 153
Query 136 YIASVNIMFAIDPFTRDTGATLVVPGSHQRIEK-PDHTYLARNAVPVQCAAGSLFVFDST 194
A+ ++AID FT D GAT++ PGSH+ ++ PD A+PV AGS F T
Sbjct 154 LAAAT--IWAIDDFTADNGATVLYPGSHRWGKRRPDSD---DEALPVVMPAGSCVFFVGT 208
Query 195 LWHAAGRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW--YSRV 252
LWH G N + +RLAI Q+ + + Y ++ + +++LG+ +
Sbjct 209 LWHGGGANNTAHERLAITAQYCEPWLRPMEAYTLSVSRDIARTVSDDIRRMLGYSIHPPF 268
Query 253 VTNLD 257
V N+D
Sbjct 269 VGNVD 273
>gi|339296446|gb|AEJ48557.1| hypothetical protein CCDC5079_3368 [Mycobacterium tuberculosis
CCDC5079]
Length=217
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/126 (33%), Positives = 66/126 (53%), Gaps = 6/126 (4%)
Query 140 VNIMFAIDPFTRDTGATLVVPGSHQRIEKPDHTYLARNAVPVQCAAGSLFVFDSTLWHAA 199
N + A+ FT D GAT VVPGSH+ E+P Y PV+ AG +++ +LWH A
Sbjct 71 CNALIALCDFTADNGATQVVPGSHRWPERPSPPY--PEGKPVEINAGDALIWNGSLWHTA 128
Query 200 GRNTSGKDRLAINHQFTRSFFKQQIDYVRALGDAVVLEQPARTQQLLGW--YSRVVTNLD 257
N + R A+ F F +QQ++ ++ +V R Q+L+G+ Y+ + +D
Sbjct 129 AANRTDAPRPALTINFCVGFVRQQVNQQLSIPRELVRCFEPRLQELIGYGLYAGKMGRID 188
Query 258 EYYQPP 263
++PP
Sbjct 189 --WRPP 192
Lambda K H
0.323 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 426144143792
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40