BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1503c
Length=182
Score E
Sequences producing significant alignments: (Bits) Value
gi|289442954|ref|ZP_06432698.1| TDP-4-oxo-6-deoxy-D-glucose tran... 376 9e-103
gi|289574187|ref|ZP_06454414.1| TDP-4-oxo-6-deoxy-D-glucose tran... 375 1e-102
gi|31792701|ref|NP_855194.1| TDP-4-oxo-6-deoxy-D-glucose transam... 375 2e-102
gi|15608641|ref|NP_216019.1| hypothetical protein Rv1503c [Mycob... 372 9e-102
gi|148822725|ref|YP_001287479.1| hypothetical protein TBFG_11534... 367 3e-100
gi|308377744|ref|ZP_07668580.1| TDP-4-oxo-6-deoxy-D-glucose tran... 354 4e-96
gi|183982333|ref|YP_001850624.1| pyridoxal phosphate-dependent e... 316 8e-85
gi|148661298|ref|YP_001282821.1| hypothetical protein MRA_1514 [... 298 2e-79
gi|339631573|ref|YP_004723215.1| hypothetical protein MAF_15280 ... 296 6e-79
gi|330808316|ref|YP_004352778.1| dTDP-4-keto-6-deoxy-D-glucose a... 248 3e-64
gi|119898966|ref|YP_934179.1| TDP-4-oxo-6-deoxy-D-glucose transa... 246 7e-64
gi|104779538|ref|YP_606036.1| TDP-4-oxo-6-deoxy-D-glucose transa... 244 5e-63
gi|116250565|ref|YP_766403.1| TDP-4-oxo-6-deoxy-D-glucose transa... 237 4e-61
gi|30250101|ref|NP_842171.1| TDP-4-oxo-6-deoxy-D-glucose transam... 235 2e-60
gi|254283358|ref|ZP_04958326.1| DegT/DnrJ/EryC1/StrS aminotransf... 228 4e-58
gi|237653914|ref|YP_002890228.1| TDP-4-oxo-6-deoxy-D-glucose tra... 223 9e-57
gi|333894120|ref|YP_004467995.1| TDP-4-oxo-6-deoxy-D-glucose tra... 223 1e-56
gi|254515910|ref|ZP_05127970.1| aminotransferase [gamma proteoba... 221 3e-56
gi|344338823|ref|ZP_08769754.1| TDP-4-keto-6-deoxy-D-glucose tra... 220 7e-56
gi|322419927|ref|YP_004199150.1| TDP-4-keto-6-deoxy-D-glucose tr... 215 2e-54
gi|82701422|ref|YP_410988.1| TDP-4-oxo-6-deoxy-D-glucose transam... 211 3e-53
gi|288941513|ref|YP_003443753.1| TDP-4-keto-6-deoxy-D-glucose tr... 210 9e-53
gi|254523108|ref|ZP_05135163.1| DegT/DnrJ/EryC1/StrS aminotransf... 205 2e-51
gi|338814356|ref|ZP_08626377.1| TDP-4-oxo-6-deoxy-D-glucose tran... 204 5e-51
gi|114776260|ref|ZP_01451305.1| DegT/DnrJ/EryC1/StrS family prot... 202 1e-50
gi|326792620|ref|YP_004310441.1| TDP-4-keto-6-deoxy-D-glucose tr... 198 3e-49
gi|338782295|gb|EGP46670.1| TDP-4-oxo-6-deoxy-D-glucose transami... 198 3e-49
gi|331086866|ref|ZP_08335943.1| lipopolysaccharide biosynthesis ... 195 2e-48
gi|187735008|ref|YP_001877120.1| TDP-4-keto-6-deoxy-D-glucose tr... 194 4e-48
gi|257064133|ref|YP_003143805.1| TDP-4-keto-6-deoxy-D-glucose tr... 194 5e-48
gi|292486666|ref|YP_003529536.1| TDP-4-keto-6-deoxy-D-glucose tr... 192 1e-47
gi|163795366|ref|ZP_02189333.1| putative lipopolysaccharide bios... 190 6e-47
gi|153813212|ref|ZP_01965880.1| hypothetical protein RUMOBE_0362... 190 7e-47
gi|161505558|ref|YP_001572670.1| TDP-4-oxo-6-deoxy-D-glucose tra... 188 4e-46
gi|293393874|ref|ZP_06638181.1| lipopolysaccharide biosynthesis ... 187 6e-46
gi|340001383|ref|YP_004732267.1| lipopolysaccharide biosynthesis... 187 7e-46
gi|336436440|ref|ZP_08616152.1| lipopolysaccharide biosynthesis ... 186 9e-46
gi|218675444|ref|ZP_03525113.1| TDP-4-oxo-6-deoxy-D-glucose tran... 186 1e-45
gi|313904877|ref|ZP_07838249.1| TDP-4-keto-6-deoxy-D-glucose tra... 186 1e-45
gi|146313629|ref|YP_001178703.1| TDP-4-oxo-6-deoxy-D-glucose tra... 186 1e-45
gi|188532361|ref|YP_001906158.1| TDP-4-oxo-6-deoxy-D-glucose tra... 186 2e-45
gi|62182400|ref|YP_218817.1| TDP-4-oxo-6-deoxy-D-glucose transam... 186 2e-45
gi|200387654|ref|ZP_03214266.1| TDP-4-keto-6-deoxy-D-glucose tra... 185 2e-45
gi|294637942|ref|ZP_06716210.1| lipopolysaccharide biosynthesis ... 185 3e-45
gi|226950127|ref|YP_002805218.1| lipopolysaccharide biosynthesis... 185 3e-45
gi|205354506|ref|YP_002228307.1| TDP-4-oxo-6-deoxy-D-glucose tra... 185 3e-45
gi|56415784|ref|YP_152859.1| TDP-4-oxo-6-deoxy-D-glucose transam... 185 3e-45
gi|16762205|ref|NP_457822.1| TDP-4-oxo-6-deoxy-D-glucose transam... 184 3e-45
gi|168244976|ref|ZP_02669908.1| TDP-4-keto-6-deoxy-D-glucose tra... 184 4e-45
gi|168234245|ref|ZP_02659303.1| TDP-4-keto-6-deoxy-D-glucose tra... 184 4e-45
>gi|289442954|ref|ZP_06432698.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium tuberculosis
T46]
gi|289447109|ref|ZP_06436853.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium tuberculosis
CPHL_A]
gi|289569532|ref|ZP_06449759.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
7 more sequence titles
Length=382
Score = 376 bits (965), Expect = 9e-103, Method: Compositional matrix adjust.
Identities = 182/182 (100%), Positives = 182/182 (100%), Gaps = 0/182 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR
Sbjct 201 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 260
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA
Sbjct 261 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 320
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 180
VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL
Sbjct 321 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 380
Query 181 RA 182
RA
Sbjct 381 RA 382
>gi|289574187|ref|ZP_06454414.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium tuberculosis
K85]
gi|289538618|gb|EFD43196.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium tuberculosis
K85]
Length=370
Score = 375 bits (963), Expect = 1e-102, Method: Compositional matrix adjust.
Identities = 181/182 (99%), Positives = 182/182 (100%), Gaps = 0/182 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR
Sbjct 189 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 248
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTS+GIGA
Sbjct 249 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSKGIGA 308
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 180
VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL
Sbjct 309 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 368
Query 181 RA 182
RA
Sbjct 369 RA 370
>gi|31792701|ref|NP_855194.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium bovis
AF2122/97]
gi|121637436|ref|YP_977659.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224989911|ref|YP_002644598.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|31618291|emb|CAD96209.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493083|emb|CAL71554.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773024|dbj|BAH25830.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|341601455|emb|CCC64128.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=382
Score = 375 bits (962), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 181/182 (99%), Positives = 182/182 (100%), Gaps = 0/182 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR
Sbjct 201 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 260
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTS+GIGA
Sbjct 261 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSKGIGA 320
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 180
VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL
Sbjct 321 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 380
Query 181 RA 182
RA
Sbjct 381 RA 382
>gi|15608641|ref|NP_216019.1| hypothetical protein Rv1503c [Mycobacterium tuberculosis H37Rv]
gi|7476793|pir||B70713 hypothetical protein Rv1503c - Mycobacterium tuberculosis (strain
H37RV)
gi|1524250|emb|CAB02017.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
Length=182
Score = 372 bits (956), Expect = 9e-102, Method: Compositional matrix adjust.
Identities = 182/182 (100%), Positives = 182/182 (100%), Gaps = 0/182 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR
Sbjct 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA
Sbjct 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 180
VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL
Sbjct 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 180
Query 181 RA 182
RA
Sbjct 181 RA 182
>gi|148822725|ref|YP_001287479.1| hypothetical protein TBFG_11534 [Mycobacterium tuberculosis F11]
gi|253799444|ref|YP_003032445.1| hypothetical protein TBMG_02476 [Mycobacterium tuberculosis KZN
1435]
gi|254231733|ref|ZP_04925060.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
16 more sequence titles
Length=180
Score = 367 bits (942), Expect = 3e-100, Method: Compositional matrix adjust.
Identities = 179/180 (99%), Positives = 180/180 (100%), Gaps = 0/180 (0%)
Query 3 LLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLD 62
+LRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLD
Sbjct 1 MLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLD 60
Query 63 LWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVF 122
LWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVF
Sbjct 61 LWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVF 120
Query 123 HYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTLRA 182
HYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTLRA
Sbjct 121 HYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTLRA 180
>gi|308377744|ref|ZP_07668580.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium tuberculosis
SUMu009]
gi|308354760|gb|EFP43611.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Mycobacterium tuberculosis
SUMu009]
Length=187
Score = 354 bits (908), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 171/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 11 EKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLWNRYHES 70
+KGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLWNRYHES
Sbjct 16 KKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLWNRYHES 75
Query 71 FESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHYVPLHDS 130
FESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHYVPLHDS
Sbjct 76 FESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHYVPLHDS 135
Query 131 PAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTLRA 182
PAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTLRA
Sbjct 136 PAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTLRA 187
>gi|183982333|ref|YP_001850624.1| pyridoxal phosphate-dependent enzyme, WecE [Mycobacterium marinum
M]
gi|183175659|gb|ACC40769.1| pyridoxal phosphate-dependent enzyme, WecE [Mycobacterium marinum
M]
Length=382
Score = 316 bits (810), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 150/182 (83%), Positives = 162/182 (90%), Gaps = 0/182 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
+++ RAEILR+KGTNRSRFLR EVDKYTWQDKGSSYL SEL+AAFLWAQFE+AERITR R
Sbjct 201 EYIYRAEILRDKGTNRSRFLRKEVDKYTWQDKGSSYLSSELIAAFLWAQFEDAERITRSR 260
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
LDLWN YH FESLEQRGLLRRPIIP+GCSHNAHMYYVLLAP DR VLA L E I A
Sbjct 261 LDLWNYYHAGFESLEQRGLLRRPIIPEGCSHNAHMYYVLLAPGTDRAGVLAALAKEDINA 320
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 180
VFHYVPLHDSPAGRRYGRT+G+LTVTND +SRLIRLPMWVGLQE DQ+RVV+ALTRILT
Sbjct 321 VFHYVPLHDSPAGRRYGRTSGDLTVTNDSSSRLIRLPMWVGLQEADQNRVVDALTRILTF 380
Query 181 RA 182
A
Sbjct 381 GA 382
>gi|148661298|ref|YP_001282821.1| hypothetical protein MRA_1514 [Mycobacterium tuberculosis H37Ra]
gi|340626520|ref|YP_004744972.1| hypothetical protein MCAN_15221 [Mycobacterium canettii CIPT
140010059]
gi|148505450|gb|ABQ73259.1| hypothetical protein MRA_1514 [Mycobacterium tuberculosis H37Ra]
gi|340004710|emb|CCC43854.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=146
Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/146 (99%), Positives = 146/146 (100%), Gaps = 0/146 (0%)
Query 37 LPSELVAAFLWAQFEEAERITRIRLDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMY 96
+PSELVAAFLWAQFEEAERITRIRLDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMY
Sbjct 1 MPSELVAAFLWAQFEEAERITRIRLDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMY 60
Query 97 YVLLAPSADREEVLARLTSEGIGAVFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRL 156
YVLLAPSADREEVLARLTSEGIGAVFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRL
Sbjct 61 YVLLAPSADREEVLARLTSEGIGAVFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRL 120
Query 157 PMWVGLQEVDQSRVVEALTRILTLRA 182
PMWVGLQEVDQSRVVEALTRILTLRA
Sbjct 121 PMWVGLQEVDQSRVVEALTRILTLRA 146
>gi|339631573|ref|YP_004723215.1| hypothetical protein MAF_15280 [Mycobacterium africanum GM041182]
gi|339330929|emb|CCC26600.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=146
Score = 296 bits (759), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 144/146 (99%), Positives = 146/146 (100%), Gaps = 0/146 (0%)
Query 37 LPSELVAAFLWAQFEEAERITRIRLDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMY 96
+PSELVAAFLWAQFEEAERITRIRLDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMY
Sbjct 1 MPSELVAAFLWAQFEEAERITRIRLDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMY 60
Query 97 YVLLAPSADREEVLARLTSEGIGAVFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRL 156
YVLLAPSADREEVLARLTS+GIGAVFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRL
Sbjct 61 YVLLAPSADREEVLARLTSKGIGAVFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRL 120
Query 157 PMWVGLQEVDQSRVVEALTRILTLRA 182
PMWVGLQEVDQSRVVEALTRILTLRA
Sbjct 121 PMWVGLQEVDQSRVVEALTRILTLRA 146
>gi|330808316|ref|YP_004352778.1| dTDP-4-keto-6-deoxy-D-glucose aminotransferase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327376424|gb|AEA67774.1| putative dTDP-4-keto-6-deoxy-D-glucose aminotransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length=378
Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/175 (65%), Positives = 134/175 (77%), Gaps = 0/175 (0%)
Query 4 LRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDL 63
LRAEI+REKGT+RSRF R EVDKYTWQ+ GSS+LP EL+AAFLWAQFEEAERIT RL++
Sbjct 203 LRAEIIREKGTDRSRFFRGEVDKYTWQEVGSSFLPGELIAAFLWAQFEEAERITHERLEI 262
Query 64 WNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFH 123
W RYHE E LE GLLRRPI+P+ C HNAHMYYVLLAP DR+ VL I +VFH
Sbjct 263 WQRYHELLEPLEADGLLRRPIVPEECQHNAHMYYVLLAPGLDRQYVLGEFKKHDISSVFH 322
Query 124 YVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRIL 178
YVPLH SP G+RYGR +G L VT+ + RL+RLP+W+GL Q R+V+ LT +
Sbjct 323 YVPLHSSPGGKRYGRAHGALEVTDRQSERLVRLPLWIGLSAEQQQRIVKVLTETI 377
>gi|119898966|ref|YP_934179.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Azoarcus sp. BH72]
gi|119671379|emb|CAL95292.1| aminotransferase [Azoarcus sp. BH72]
Length=380
Score = 246 bits (629), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 115/179 (65%), Positives = 138/179 (78%), Gaps = 0/179 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
D LRAEI+REKGT+RSRF R EVDKYTWQ+ GSS+LP EL+AAFLWAQ EEA+RIT+ R
Sbjct 202 DMSLRAEIIREKGTDRSRFFRGEVDKYTWQEVGSSFLPGELIAAFLWAQLEEADRITKER 261
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
L W RYHE E LE +G+LRRPI+P C HNAHMYYVLLAP +R+EVL I +
Sbjct 262 LASWQRYHEFLEPLEAKGILRRPIVPGDCQHNAHMYYVLLAPEINRQEVLDSFKRNEIWS 321
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILT 179
VFHYVPLH SPAG+RYGR++G+L VT ++ RL+RLPMWVGL Q RVVE L+ ++
Sbjct 322 VFHYVPLHSSPAGKRYGRSHGDLDVTTRLSERLVRLPMWVGLTNEQQERVVEVLSEAVS 380
>gi|104779538|ref|YP_606036.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Pseudomonas entomophila
L48]
gi|95108525|emb|CAK13219.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Pseudomonas entomophila
L48]
Length=381
Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 111/181 (62%), Positives = 141/181 (78%), Gaps = 0/181 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
+ +LRAEI+REKGT+RSRF R +VDKYTWQ+ GSS+LP EL+AAFLWAQ +EA IT R
Sbjct 201 ELVLRAEIIREKGTDRSRFFRGQVDKYTWQEVGSSFLPGELIAAFLWAQLQEARGITDRR 260
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
L LW+RYH++ LE +GLLRRPI+P C HNAHMY+VLLAP DR+ V+ L +E I A
Sbjct 261 LALWDRYHDTLAELEAQGLLRRPIVPADCQHNAHMYHVLLAPEVDRQAVIKALRAEEIYA 320
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 180
VFHYVPLH SPAG RYGR +G++ +T+ ++ RL+RLP+W GL+ Q RVV++L R LT
Sbjct 321 VFHYVPLHSSPAGERYGRVHGSMQLTDSLSERLVRLPLWCGLKPAQQDRVVDSLGRALTR 380
Query 181 R 181
R
Sbjct 381 R 381
>gi|116250565|ref|YP_766403.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Rhizobium leguminosarum
bv. viciae 3841]
gi|115255213|emb|CAK06288.1| putative lipopolysaccharide biosynthesis protein [Rhizobium leguminosarum
bv. viciae 3841]
Length=371
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/175 (64%), Positives = 130/175 (75%), Gaps = 0/175 (0%)
Query 4 LRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDL 63
LRAE++REKGT+RSRF R EVDKYTWQ+ GSS+LP EL+AAFLWAQ EE+ERIT+ RL +
Sbjct 192 LRAEVIREKGTDRSRFFRGEVDKYTWQEVGSSFLPGELIAAFLWAQLEESERITKDRLAI 251
Query 64 WNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFH 123
W+ YH E LE GLLRRPI+P C HNAHMYYVLL DR++VL L S GI +VFH
Sbjct 252 WHYYHAILEPLETEGLLRRPIVPDDCQHNAHMYYVLLPEERDRQKVLGELKSNGISSVFH 311
Query 124 YVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRIL 178
YVPLH SPAGRRY R +G L VT + RLIRLP+WVGL Q+RV L L
Sbjct 312 YVPLHSSPAGRRYARMSGELPVTTSQSERLIRLPLWVGLTFEQQNRVAAVLADAL 366
>gi|30250101|ref|NP_842171.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Nitrosomonas europaea
ATCC 19718]
gi|30139208|emb|CAD86078.1| DegT/DnrJ/EryC1/StrS family [Nitrosomonas europaea ATCC 19718]
Length=381
Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/179 (63%), Positives = 132/179 (74%), Gaps = 0/179 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
D LRAEI+REKGT+RS+F R EVDKYTWQ+ GSS+LP EL+AAFLWAQ EEA+RIT R
Sbjct 203 DLSLRAEIIREKGTDRSQFFRGEVDKYTWQEVGSSFLPGELIAAFLWAQLEEADRITNER 262
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
L W RYHE LE + +LRRPI+P+ C HNAHMYYVLLA DR+EVL I +
Sbjct 263 LASWQRYHELLGPLEAKEILRRPIVPEECQHNAHMYYVLLASKIDRQEVLDEFKRNDIWS 322
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILT 179
VFHYVPLH SPAG RYGR +GNL +T + RL+RLP+WVGL Q RVVE L + ++
Sbjct 323 VFHYVPLHSSPAGLRYGRIHGNLKITTQQSERLVRLPLWVGLSVEQQDRVVEVLCKAVS 381
>gi|254283358|ref|ZP_04958326.1| DegT/DnrJ/EryC1/StrS aminotransferase [gamma proteobacterium
NOR51-B]
gi|219679561|gb|EED35910.1| DegT/DnrJ/EryC1/StrS aminotransferase [gamma proteobacterium
NOR51-B]
Length=375
Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 103/169 (61%), Positives = 133/169 (79%), Gaps = 1/169 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAE++REKGTNRS+F R E+DKYTW D GSSYLP E+VAAFLWAQFEEAERIT R +LW
Sbjct 202 RAEVIREKGTNRSKFFRGEIDKYTWVDTGSSYLPGEMVAAFLWAQFEEAERITTCRRELW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
RYHE+F LE+ G LRRP IP GC HNAH+YY++L ADR + + ++ ++ + VFHY
Sbjct 262 MRYHEAFYPLERAGRLRRPSIPDGCGHNAHIYYLVLRDLADRTDFIRKMRAKDVQCVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEA 173
VPLH SP G R GR++G L VTN+++ ++RLP+W+GL+E +Q RV+EA
Sbjct 322 VPLHSSPQGARVGRSSGELPVTNELSDCIVRLPLWLGLEE-EQHRVIEA 369
>gi|237653914|ref|YP_002890228.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Thauera sp. MZ1T]
gi|237625161|gb|ACR01851.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Thauera sp. MZ1T]
Length=374
Score = 223 bits (568), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 100/168 (60%), Positives = 129/168 (77%), Gaps = 1/168 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW D GSSYLP EL+AAFLWAQ EEA+ ITR RL +W
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPGELIAAFLWAQMEEADSITRRRLGIW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
N YH+ F E++G LRRP+IP C HNAHMYY+LL R + RL GI VFHY
Sbjct 262 NTYHQWFAEAERQGRLRRPVIPAHCGHNAHMYYLLLPGLEQRTAFIERLRGLGIHCVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVE 172
+PLHD+PAGRR+GR +G L+VT ++A RL+RLP+W+G+++ Q+ +++
Sbjct 322 IPLHDAPAGRRFGRAHGELSVTENIADRLVRLPLWLGMEDA-QAEIIQ 368
>gi|333894120|ref|YP_004467995.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Alteromonas sp. SN2]
gi|332994138|gb|AEF04193.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Alteromonas sp. SN2]
Length=381
Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/174 (59%), Positives = 126/174 (73%), Gaps = 0/174 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
+AEI+REKGTNRS+F R EVDKYTWQ+ GSSYLP EL+AAFLWAQ E+AE+IT RL W
Sbjct 202 KAEIIREKGTNRSQFFRGEVDKYTWQEVGSSYLPGELIAAFLWAQLEDAEKITEARLRSW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
+ YH E +G L RPIIP C HNAH+YYV+L DR +L ++ + GIGAVFHY
Sbjct 262 DYYHSLLADAESQGYLNRPIIPSECGHNAHLYYVILPEHIDRNRILFKMKTAGIGAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRIL 178
VPLH SPAG++YGR +G L T ++ +LIRLP+WVGL + Q VV+ L L
Sbjct 322 VPLHSSPAGKKYGRVSGELRNTEVLSKQLIRLPLWVGLSKEQQETVVQVLLDAL 375
>gi|254515910|ref|ZP_05127970.1| aminotransferase [gamma proteobacterium NOR5-3]
gi|219675632|gb|EED31998.1| aminotransferase [gamma proteobacterium NOR5-3]
Length=378
Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/179 (57%), Positives = 128/179 (72%), Gaps = 0/179 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
D R EI+REKGT+RSRF R VDKYTWQ+ GSS+LP EL +AFLWAQ EEA IT R
Sbjct 198 DLCERGEIIREKGTDRSRFFRGLVDKYTWQEIGSSFLPGELTSAFLWAQLEEAREITLAR 257
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
L +W+ YH E LE+ G LRRP++P C HNAHMYYV+L+ DR VL+ L S G+GA
Sbjct 258 LQIWDIYHRLIEGLEREGYLRRPVVPDECEHNAHMYYVVLSDGIDRSRVLSELRSAGVGA 317
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILT 179
VFHYVPLH SP G RYG++ +L ++N V+ +LIRLP WVG+ +Q VV+ L + L+
Sbjct 318 VFHYVPLHSSPVGTRYGKSKDDLEISNFVSEQLIRLPFWVGMTLEEQMFVVDELGKALS 376
>gi|344338823|ref|ZP_08769754.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Thiocapsa marina 5811]
gi|343801405|gb|EGV19348.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Thiocapsa marina 5811]
Length=377
Score = 220 bits (561), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/167 (61%), Positives = 127/167 (77%), Gaps = 1/167 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW D GSSYLP E++AAFLWAQ EEA+ IT RL +W
Sbjct 201 RAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPGEIIAAFLWAQMEEADTITARRLAIW 260
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
RYH +FESLE+ G +RRP+IPQGC HNAH+Y +LL DR + + GI VFHY
Sbjct 261 ERYHAAFESLERAGRVRRPVIPQGCGHNAHLYSLLLQDLDDRTAFIDAMKQSGIHCVFHY 320
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVV 171
VPLH +P G+ GRT GNL VT+D+A RL+RLP+W+GL++ Q +V+
Sbjct 321 VPLHSAPHGQVVGRTAGNLPVTDDLADRLVRLPLWLGLED-QQEQVI 366
>gi|322419927|ref|YP_004199150.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Geobacter sp. M18]
gi|320126314|gb|ADW13874.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Geobacter sp. M18]
Length=378
Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 94/173 (55%), Positives = 131/173 (76%), Gaps = 0/173 (0%)
Query 2 FLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRL 61
F+ +AE++REKGTNRSRF R +VDKYTW D GSSYLP EL+AAFL+AQ +EA IT R+
Sbjct 198 FVEQAEVIREKGTNRSRFFRGQVDKYTWVDIGSSYLPGELIAAFLYAQLDEAANITERRI 257
Query 62 DLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAV 121
++W +Y+++F L +R + R P IP+ C HNAHM+Y+LL R ++ L +GI A+
Sbjct 258 EIWQKYNDAFFELGERKVARLPCIPEECQHNAHMFYLLLPTFEQRTRFISVLKKQGINAI 317
Query 122 FHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
FHYVPLH SPAG++Y RT+G + VT+DV+ RL+RLP++ L E+DQ ++VEA+
Sbjct 318 FHYVPLHSSPAGQKYCRTSGVMKVTDDVSDRLVRLPLYCDLSEIDQHKIVEAI 370
>gi|82701422|ref|YP_410988.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Nitrosospira multiformis
ATCC 25196]
gi|82409487|gb|ABB73596.1| DegT/DnrJ/EryC1/StrS aminotransferase [Nitrosospira multiformis
ATCC 25196]
Length=374
Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/171 (58%), Positives = 128/171 (75%), Gaps = 1/171 (0%)
Query 2 FLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRL 61
F +AEI+REKGTNRS+F R +VDKYTW D GSSYLPSEL+AAFLWAQ EEA+ IT+ RL
Sbjct 199 FAEQAEIIREKGTNRSQFFRGQVDKYTWVDFGSSYLPSELIAAFLWAQIEEADAITQRRL 258
Query 62 DLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAV 121
D+W+ YH +FE LE++G + RP IP C HNAHMYY+LL R + L +GIG V
Sbjct 259 DIWDVYHANFELLEKQGKIHRPTIPSDCMHNAHMYYLLLPDLDRRTAFINALRQKGIGTV 318
Query 122 FHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVE 172
FHYVPL SP G ++GR +G LT T +++ RL+RLP+W+GL+E Q+ V++
Sbjct 319 FHYVPLDSSPMGEKWGRKSGALTRTRELSDRLVRLPLWLGLEEY-QNEVIQ 368
>gi|288941513|ref|YP_003443753.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Allochromatium vinosum
DSM 180]
gi|288896885|gb|ADC62721.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Allochromatium vinosum
DSM 180]
Length=381
Score = 210 bits (534), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 103/174 (60%), Positives = 125/174 (72%), Gaps = 1/174 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS F R +VDKYTW D GSSYLPSELVAAFLWAQ EEA+ IT+ RL LW
Sbjct 202 RAEIIREKGTNRSLFFRGQVDKYTWVDLGSSYLPSELVAAFLWAQMEEADAITQRRLTLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
N YH+ E RRPI+P C HNAHMYY+LLA R+ +A L + I VFHY
Sbjct 262 NVYHQWLAPTEAEQRCRRPIVPSVCHHNAHMYYLLLADLDMRQRFIAGLKAREIHPVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRIL 178
VPLH +PAG+R+GR +G L T +A RL+RLP+W+GL+E DQ RV+ L ++
Sbjct 322 VPLHSAPAGQRWGRPHGELPNTESLADRLVRLPLWLGLEE-DQPRVIRELLAVI 374
>gi|254523108|ref|ZP_05135163.1| DegT/DnrJ/EryC1/StrS aminotransferase [Stenotrophomonas sp. SKA14]
gi|219720699|gb|EED39224.1| DegT/DnrJ/EryC1/StrS aminotransferase [Stenotrophomonas sp. SKA14]
Length=376
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 91/164 (56%), Positives = 123/164 (75%), Gaps = 0/164 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
+F AEI+REKGTNRSRF R +VDKYTW D GSSYLP E+ AAFL AQ ++AE+IT+ R
Sbjct 197 EFGEAAEIIREKGTNRSRFFRGQVDKYTWVDVGSSYLPGEITAAFLSAQMQQAEQITQRR 256
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
L +W++YH + EQ G LRRP+IP C+HNAHMYY+LL R +A L +G+ A
Sbjct 257 LAIWDQYHAWAQQHEQAGRLRRPVIPPHCTHNAHMYYMLLPSLEARTHFIATLREQGVQA 316
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQE 164
VFHY+PLH SPAG+ GRT ++ VT+D++ RL+R+P+W+G+++
Sbjct 317 VFHYIPLHSSPAGQAIGRTGSSMAVTDDISDRLVRMPLWLGVED 360
>gi|338814356|ref|ZP_08626377.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Acetonema longum DSM
6540]
gi|337273678|gb|EGO62294.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Acetonema longum DSM
6540]
Length=377
Score = 204 bits (519), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/171 (56%), Positives = 124/171 (73%), Gaps = 0/171 (0%)
Query 2 FLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRL 61
F+ RAEI+ EKGTNRSRF R +VDKYTW D GSS+LPSEL AA+LWAQ E A +IT+ RL
Sbjct 199 FIDRAEIIWEKGTNRSRFFRGQVDKYTWVDIGSSFLPSELNAAYLWAQLECASKITQARL 258
Query 62 DLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAV 121
++W+ YHE +SLE+ G +RRP+IP GC+HNAHMYY+L+ R ++ L S+ I AV
Sbjct 259 NVWHEYHERLQSLERAGHIRRPVIPDGCAHNAHMYYLLVQNLDVRTRLIDHLQSKEIYAV 318
Query 122 FHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVE 172
FHYVPLH+SPAG +YG+ G L T +A L+RLP+WV L + + +
Sbjct 319 FHYVPLHNSPAGLQYGKQQGELKQTEHLADCLVRLPLWVELTNAEIQYITD 369
>gi|114776260|ref|ZP_01451305.1| DegT/DnrJ/EryC1/StrS family protein [Mariprofundus ferrooxydans
PV-1]
gi|114553090|gb|EAU55488.1| DegT/DnrJ/EryC1/StrS family protein [Mariprofundus ferrooxydans
PV-1]
Length=367
Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/171 (57%), Positives = 120/171 (71%), Gaps = 1/171 (0%)
Query 2 FLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRL 61
F RAEIL EKGTNRS F R EVDKYTW D GSS+LP EL+AAFLWAQ E A+ IT RL
Sbjct 190 FAERAEILWEKGTNRSSFFRGEVDKYTWVDIGSSFLPGELIAAFLWAQLEHADGITARRL 249
Query 62 DLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAV 121
+WN YH +F E LRRP+IP+GC HNAHMYY++ A+R +A + + I V
Sbjct 250 HIWNNYHTAFADPETNHQLRRPVIPEGCRHNAHMYYLIYDSLAERSAFIAHMKAADIMTV 309
Query 122 FHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVE 172
FHYVPLH +PAG +Y RT+G L +T ++ RL+RLP+W GL E + RV++
Sbjct 310 FHYVPLHLAPAGLKYCRTHGPLPITEQLSERLVRLPLWPGL-ETELPRVID 359
>gi|326792620|ref|YP_004310441.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Clostridium lentocellum
DSM 5427]
gi|326543384|gb|ADZ85243.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Clostridium lentocellum
DSM 5427]
Length=379
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 88/173 (51%), Positives = 121/173 (70%), Gaps = 0/173 (0%)
Query 2 FLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRL 61
++ RAEI+REKGTNRS+F R E+ KYTW D+GSSYLPS++ AA+LWAQ E AE I + R+
Sbjct 198 YVERAEIIREKGTNRSKFFRGEIAKYTWVDQGSSYLPSDINAAYLWAQLEMAEIIKKNRM 257
Query 62 DLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAV 121
D WNRYHE+ E+LE RG +RRP++P+ C HNAH+YY+ +R +++ L I AV
Sbjct 258 DSWNRYHENLEALEVRGFIRRPVVPKECQHNAHIYYIKTTDIEERSKLIEYLRKHNILAV 317
Query 122 FHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
FHY+PLH S AG Y R NG T + +L+RLPM+ G+++ D +V +
Sbjct 318 FHYIPLHSSEAGLMYSRFNGEDEYTTRESEKLVRLPMYYGIKKEDIEYIVSCI 370
>gi|338782295|gb|EGP46670.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Achromobacter xylosoxidans
AXX-A]
Length=376
Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/170 (55%), Positives = 118/170 (70%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEILREKGT+RS+FLR EVD+YTWQD GSS+LPSEL+AAFLW+Q E++ IT RL W
Sbjct 203 RAEILREKGTDRSQFLRGEVDRYTWQDVGSSFLPSELIAAFLWSQLEDSRAITAARLAAW 262
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
NRYHE+F+ E++G L P +P G N H+YY+LL + RE + RL G+GA HY
Sbjct 263 NRYHEAFQDAERQGKLTLPTVPDGAQANGHIYYLLLDSAEKREALRQRLLEAGVGATTHY 322
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
V LH+SPAG R R L +T V+ L+RLPM+ GL Q RV++ L
Sbjct 323 VSLHNSPAGSRIARCASALPITERVSETLLRLPMFAGLDTQAQDRVIDVL 372
>gi|331086866|ref|ZP_08335943.1| lipopolysaccharide biosynthesis protein rffA [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330410032|gb|EGG89467.1| lipopolysaccharide biosynthesis protein rffA [Lachnospiraceae
bacterium 9_1_43BFAA]
Length=376
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/173 (50%), Positives = 121/173 (70%), Gaps = 0/173 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R ++DKYTW D GSSYLPS+L AA+LWAQFE+AE I R+ W
Sbjct 201 RAEIIREKGTNRSKFFRGQIDKYTWMDAGSSYLPSDLNAAYLWAQFEKAEEILNDRMTSW 260
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
N Y++ + LE +G + P IP+ C+HNAHM+Y+ +R+ +++ L +GIGAVFHY
Sbjct 261 NLYNQLLKELEDQGYIVLPEIPEECTHNAHMFYIKTKDLEERQNLISFLKEKGIGAVFHY 320
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRI 177
+PLH +PAG++YG G T + RL+RLP++ GL+E D + E + +
Sbjct 321 IPLHSAPAGKKYGEFFGKDIYTTSESERLLRLPLYYGLKEQDVMYITEQVKKF 373
>gi|187735008|ref|YP_001877120.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Akkermansia muciniphila
ATCC BAA-835]
gi|187425060|gb|ACD04339.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Akkermansia muciniphila
ATCC BAA-835]
Length=379
Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/169 (53%), Positives = 118/169 (70%), Gaps = 0/169 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNR+RF R +VDKYTW D GSSYLP E++AA+L+AQ E + I RL W
Sbjct 202 RAEIIREKGTNRARFFRGQVDKYTWVDVGSSYLPGEMIAAYLYAQLEHGQEINGERLKWW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
+ YH + LE++G+LRRP IP+ C+HNAHMYYVLL +R ++ +L GI AVFHY
Sbjct 262 DMYHRALAPLEEQGVLRRPCIPEHCTHNAHMYYVLLRSMEERTRLINKLAEHGIKAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEA 173
+PLH SPAG R+GR+ G + T+ + L+RLP++ L E V+ A
Sbjct 322 IPLHSSPAGMRFGRSAGAMPHTDRTSDTLLRLPLYYDLGEEGCREVLRA 370
>gi|257064133|ref|YP_003143805.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Slackia heliotrinireducens
DSM 20476]
gi|256791786|gb|ACV22456.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Slackia heliotrinireducens
DSM 20476]
Length=377
Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/173 (53%), Positives = 120/173 (70%), Gaps = 0/173 (0%)
Query 2 FLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRL 61
F RAEI+REKGTNRSRFLR +VDKYTW + GSSYLPS++ AA+L AQ E A+ I R+
Sbjct 199 FNERAEIIREKGTNRSRFLRGQVDKYTWVEYGSSYLPSDMNAAYLLAQLERADEINDSRI 258
Query 62 DLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAV 121
WNRY+E+ L G + P IP+GC HNAHM+Y+ +R +++ L I +V
Sbjct 259 HAWNRYNENLADLAADGSIELPFIPEGCGHNAHMFYIKCKDLEERTSLISYLGDRDIMSV 318
Query 122 FHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
FHYVPLH SPAG RYGRT +++VT+ ++RL RLPM+ GL + D RV +A+
Sbjct 319 FHYVPLHSSPAGLRYGRTAADMSVTDRESNRLTRLPMYYGLTDEDVDRVCDAV 371
>gi|292486666|ref|YP_003529536.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Erwinia amylovora
CFBP1430]
gi|292897903|ref|YP_003537272.1| lipopolysaccharide biosynthesis protein [Erwinia amylovora ATCC
49946]
gi|291197751|emb|CBJ44846.1| lipopolysaccharide biosynthesis protein [Erwinia amylovora ATCC
49946]
gi|291552083|emb|CBA19120.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Erwinia amylovora
CFBP1430]
gi|312170732|emb|CBX78994.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Erwinia amylovora
ATCC BAA-2158]
Length=376
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/170 (53%), Positives = 119/170 (70%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL ++L AA+LWAQ E AE + + RL LW
Sbjct 202 RAEIVREKGTNRSQFFRGQVDKYTWRDIGSSYLMADLQAAYLWAQLEVAETVNQQRLRLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
YH++ + + RG + P IP GC+HNAHM+++ L + DR ++ARL GI AVFHY
Sbjct 262 QNYHDALQPIAARGRITLPTIPDGCAHNAHMFWLKLRDNDDRSALIARLKEAGILAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLH SPAG+R+GR G T + RL+RLP++ L + Q V+ AL
Sbjct 322 IPLHGSPAGKRFGRLCGEDRYTQQESDRLLRLPLFYNLSDSQQKTVISAL 371
>gi|163795366|ref|ZP_02189333.1| putative lipopolysaccharide biosynthesis protein [alpha proteobacterium
BAL199]
gi|163796663|ref|ZP_02190622.1| enoyl-CoA hydratase [alpha proteobacterium BAL199]
gi|159178223|gb|EDP62768.1| enoyl-CoA hydratase [alpha proteobacterium BAL199]
gi|159179352|gb|EDP63883.1| putative lipopolysaccharide biosynthesis protein [alpha proteobacterium
BAL199]
Length=320
Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/178 (54%), Positives = 119/178 (67%), Gaps = 0/178 (0%)
Query 1 DFLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIR 60
+ + RAE++ +KGT+R+RF R E KY WQD GSS+ SEL +AFL AQ EE + I R
Sbjct 137 ELIARAEVISDKGTDRARFERGETQKYVWQDVGSSFRASELTSAFLLAQLEEQDAIVARR 196
Query 61 LDLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGA 120
+LW RYH + ES E RG L RP I Q C N H+YYVLL+ R ++ L ++GI A
Sbjct 197 RELWARYHIALESHEIRGGLLRPNISQSCGTNGHIYYVLLSDEDKRRTLIDGLKAQGIHA 256
Query 121 VFHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRIL 178
VFHYVPLHDSPAGRRY RT G++ T +ASR++RLPM +GL V RVV AL L
Sbjct 257 VFHYVPLHDSPAGRRYSRTAGSMAHTVSIASRILRLPMHLGLTNVAVDRVVTALGETL 314
>gi|153813212|ref|ZP_01965880.1| hypothetical protein RUMOBE_03628 [Ruminococcus obeum ATCC 29174]
gi|149830743|gb|EDM85834.1| hypothetical protein RUMOBE_03628 [Ruminococcus obeum ATCC 29174]
Length=375
Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 117/170 (69%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
+AEILREKGT+RS+F R ++DKY W D GSSYLPSE+ AA+L+AQ EE ++I R R ++
Sbjct 201 KAEILREKGTDRSKFFRGQIDKYRWIDYGSSYLPSEMNAAYLYAQLEECDKINRKRHQVY 260
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
+ YHE E LE++G ++RP++P+GC HNAHMYY+ + A R ++A L GI FHY
Sbjct 261 DGYHERLEDLEKQGKIQRPVVPEGCVHNAHMYYIKVKDIAVRTRLIAYLRENGIAPAFHY 320
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
VPLH SPAG ++GR +G T + RL+RLPM+ L D + E +
Sbjct 321 VPLHSSPAGEKFGRFHGKDVYTTKESERLLRLPMFYDLSMDDVDYIAEKI 370
>gi|161505558|ref|YP_001572670.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866905|gb|ABX23528.1| hypothetical protein SARI_03728 [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:--]
Length=376
Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 116/170 (69%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E A+RI + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++ L + G ++ P IP+ C HNAHM+Y+ L ADR ++ L I AVFHY
Sbjct 262 QTYYDALTPLARAGCIKLPSIPENCGHNAHMFYIKLRDIADRSALIHFLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLHD PAG ++G+ G+ T + RL+RLP++ L VDQ V+ L
Sbjct 322 IPLHDCPAGDKFGKFIGDDIYTTKESERLLRLPLFYNLAPVDQRTVIATL 371
>gi|293393874|ref|ZP_06638181.1| lipopolysaccharide biosynthesis protein RffA [Serratia odorifera
DSM 4582]
gi|291423701|gb|EFE96923.1| lipopolysaccharide biosynthesis protein RffA [Serratia odorifera
DSM 4582]
Length=376
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/174 (51%), Positives = 117/174 (68%), Gaps = 0/174 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E AERI + RL LW
Sbjct 202 RAEIVREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAAERINQRRLRLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++F+ L G + P+IPQGC HNAHM+Y+ L DR + L I VFHY
Sbjct 262 QSYYDAFKPLADAGRIDLPVIPQGCVHNAHMFYLKLKDINDRSAFIDYLKEAEIMTVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRIL 178
+PLH PAG ++GR G+ T+ + RL+RLP++ L +V+Q V+ + L
Sbjct 322 IPLHACPAGEKFGRFAGDDRFTSKESERLVRLPLFYNLSDVNQRTVINTVLSYL 375
>gi|340001383|ref|YP_004732267.1| lipopolysaccharide biosynthesis protein [Salmonella bongori NCTC
12419]
gi|339514745|emb|CCC32515.1| lipopolysaccharide biosynthesis protein [Salmonella bongori NCTC
12419]
Length=376
Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/170 (52%), Positives = 113/170 (67%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E A+RI + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
YH++ L + G + P IP+ C HNAHM+Y+ L ADR ++ L I AVFHY
Sbjct 262 QTYHDALTPLVRAGRIELPCIPENCEHNAHMFYIKLQDIADRSALINFLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLHD PAG ++G G T + RL+RLP++ L VDQ V+ L
Sbjct 322 IPLHDCPAGDKFGEFIGEDVYTTTESERLLRLPLFYNLAPVDQRTVIATL 371
>gi|336436440|ref|ZP_08616152.1| lipopolysaccharide biosynthesis protein rffA [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336007305|gb|EGN37330.1| lipopolysaccharide biosynthesis protein rffA [Lachnospiraceae
bacterium 1_4_56FAA]
Length=377
Score = 186 bits (473), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 85/172 (50%), Positives = 118/172 (69%), Gaps = 0/172 (0%)
Query 3 LLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLD 62
+LRAEI+REKGTNRS+F R E+DKYTW D GSSYLPSEL AA+LWAQ E+A++I R+
Sbjct 199 ILRAEIVREKGTNRSQFFRGEIDKYTWMDAGSSYLPSELNAAYLWAQLEDAQKIYDDRMR 258
Query 63 LWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVF 122
WN Y+E + L G + P+IP+GC HNAHM+Y+ +R +++ L + I +VF
Sbjct 259 SWNLYYEQLKPLADEGRIELPVIPEGCVHNAHMFYIKTKDLKERTDLIFYLKGKQINSVF 318
Query 123 HYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
HY+PLH SPAG++ G +G T + RL+RLPM+ GL + + V E++
Sbjct 319 HYIPLHSSPAGKKLGVFHGEDKYTTRESERLLRLPMYYGLGKENIECVTESI 370
>gi|218675444|ref|ZP_03525113.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Rhizobium etli GR56]
Length=375
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/176 (56%), Positives = 118/176 (68%), Gaps = 4/176 (2%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RA+I+REKGTNRS+F+R EV KY WQD GSS+LPS+LVAA L AQ E AE +TR RL LW
Sbjct 202 RAQIIREKGTNRSQFIRGEVAKYDWQDMGSSFLPSDLVAAVLLAQLEYAEELTRHRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
+ YH+ F++ G LR P IP +HN H+Y+V RE L +EGIGAV HY
Sbjct 262 HAYHKIFKAAGHNG-LRLPEIPADAAHNGHIYHVRFTNLERREVARRELVAEGIGAVTHY 320
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 180
VPLH SPAG RYGRT + VTN+ A L+RLP+ GL E D RV +RIL L
Sbjct 321 VPLHSSPAGERYGRTASLMAVTNETADSLLRLPLHGGLTEADIVRVA---SRILEL 373
>gi|313904877|ref|ZP_07838249.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Eubacterium cellulosolvens
6]
gi|313470310|gb|EFR65640.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Eubacterium cellulosolvens
6]
Length=376
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/176 (51%), Positives = 116/176 (66%), Gaps = 0/176 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEILREKGT+RSRF R +VDKYTW D G SYLPSEL AA+LWAQ E+A+ I R+ W
Sbjct 201 RAEILREKGTDRSRFFRGQVDKYTWVDFGDSYLPSELNAAYLWAQLEKADEIYDDRMHTW 260
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y +F LEQ GL+ P+IP+ HNAHMYY+ A R E +A + G+ FHY
Sbjct 261 ECYDRAFRPLEQEGLVSLPVIPEYDVHNAHMYYLKFRNLAQRTEFIAYMKERGVQTPFHY 320
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRILTL 180
VPLH +PAG R+GR +G T + RL+RLP++ G++E D+ V+ A+ T+
Sbjct 321 VPLHSAPAGERFGRFHGVDRCTTSESERLVRLPLYYGMKEEDRETVIRAVLDYFTV 376
>gi|146313629|ref|YP_001178703.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Enterobacter sp. 638]
gi|145320505|gb|ABP62652.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Enterobacter sp. 638]
Length=376
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 115/170 (68%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAE++REKGTNRS+F R +VDKYTW+D GSSYL ++L AAFLWAQ E AERI + RL LW
Sbjct 202 RAEVIREKGTNRSQFFRGQVDKYTWRDIGSSYLMADLQAAFLWAQLEAAERINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++ L ++G + P IP C HNAHM+Y+ L + DR +++A L I AVFHY
Sbjct 262 QTYYDALAPLAKKGRIELPTIPADCVHNAHMFYIKLRDNDDRSDLIAYLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLH SPAG +GR G T + RL+RLP++ L V+Q V+ L
Sbjct 322 IPLHSSPAGEMFGRFAGEDRYTTKESERLLRLPLFYNLAPVNQRTVINTL 371
>gi|188532361|ref|YP_001906158.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Erwinia tasmaniensis
Et1/99]
gi|188027403|emb|CAO95250.1| Lipopolysaccharide biosynthesis protein [Erwinia tasmaniensis
Et1/99]
Length=376
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 116/170 (69%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL ++L AA+LWAQ E AE + + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMADLQAAYLWAQLEVAEAVNQQRLRLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
YH++ + + RG + P IP GC HNAHM+++ L DR ++A L I AVFHY
Sbjct 262 QNYHDALQPIAARGRITLPAIPAGCEHNAHMFWLKLRDGCDRSALIAWLKEAEILAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLH SPAGRR+GR G T + RL+RLP++ L + +Q V+ +L
Sbjct 322 IPLHSSPAGRRFGRFCGEDRCTQQESDRLLRLPLFYNLSDNNQKTVIGSL 371
>gi|62182400|ref|YP_218817.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|62130033|gb|AAX67736.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|322716893|gb|EFZ08464.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
Length=376
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 115/170 (68%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E A+RI + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++ L + G + P IP+ C HNAHM+Y+ L ADR +++ L I AVFHY
Sbjct 262 QTYYDALTPLARAGRIELPSIPENCGHNAHMFYIKLRDIADRSALISFLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLHD PAG ++G G+ T + RL+RLP++ L VDQ V+ L
Sbjct 322 IPLHDCPAGDKFGEFIGDDVYTTKESERLLRLPLFYNLAPVDQRTVITTL 371
>gi|200387654|ref|ZP_03214266.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|199604752|gb|EDZ03297.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
Length=376
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 113/170 (67%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E A+RI + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++ L G + P IP+ C HNAHM+Y+ L ADR ++ L I AVFHY
Sbjct 262 QTYYDALTPLAHAGRIELPSIPENCGHNAHMFYIKLRDIADRSALINSLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLHD PAG ++G G+ T + RL+RLP++ L VDQ V+ L
Sbjct 322 IPLHDCPAGDKFGEFIGDDVYTTKESERLLRLPLFYNLAPVDQRTVITTL 371
>gi|294637942|ref|ZP_06716210.1| lipopolysaccharide biosynthesis protein RffA [Edwardsiella tarda
ATCC 23685]
gi|291088903|gb|EFE21464.1| lipopolysaccharide biosynthesis protein RffA [Edwardsiella tarda
ATCC 23685]
Length=376
Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/173 (53%), Positives = 114/173 (66%), Gaps = 0/173 (0%)
Query 2 FLLRAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRL 61
L RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E AERI + RL
Sbjct 199 LLERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEVAERINQRRL 258
Query 62 DLWNRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAV 121
LW YH++ L G L PIIP C HNAHM+Y+ L A R ++ L I AV
Sbjct 259 QLWQNYHDALAPLAAAGRLTLPIIPAECQHNAHMFYLKLRDEAQRGALIDFLKEAEIMAV 318
Query 122 FHYVPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
FHY+PLH SP G R+GR G T + RL+RLP++ L EV+Q V+ ++
Sbjct 319 FHYIPLHSSPGGARFGRFTGEDRYTTRESERLVRLPLFYNLPEVNQRTVINSI 371
>gi|226950127|ref|YP_002805218.1| lipopolysaccharide biosynthesis protein RffA [Clostridium botulinum
A2 str. Kyoto]
gi|226841166|gb|ACO83832.1| lipopolysaccharide biosynthesis protein RffA [Clostridium botulinum
A2 str. Kyoto]
Length=376
Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 80/174 (46%), Positives = 122/174 (71%), Gaps = 0/174 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
++EI+REKGTNRS+F R EVDKYTW DKGSSYLPS+++ AFLWAQF++ + I + R +++
Sbjct 202 KSEIVREKGTNRSQFFRGEVDKYTWIDKGSSYLPSDILVAFLWAQFQKMDEIQQKRKNIY 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y++ + L+ +G+L PIIP+ C N H++++LL +R ++ +L + IGAVFHY
Sbjct 262 ENYYKGLKKLQDKGVLTLPIIPKECESNYHIFHILLNSEKERNSLMYKLKEKNIGAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEALTRIL 178
VPLH S G + G G+L T +++ RL+RLPM+V L DQ+ ++ + +I
Sbjct 322 VPLHTSSMGEKLGYKLGDLPNTENLSWRLLRLPMYVELSLEDQNYIINEINKIF 375
>gi|205354506|ref|YP_002228307.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205274287|emb|CAR39307.1| lipopolysaccharide biosynthesis protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326629640|gb|EGE35983.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
Length=376
Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 114/170 (68%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E A+RI + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++ L + G + P IP+ C HNAHM+Y+ L ADR ++ L I AVFHY
Sbjct 262 QTYYDALTPLARAGRIELPSIPENCGHNAHMFYIKLRDIADRSALINFLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLHD PAG ++G G+ T + RL+RLP++ L VDQ V+ L
Sbjct 322 IPLHDCPAGDKFGEFIGDDVYTTKESERLLRLPLFYNLAPVDQRTVITTL 371
>gi|56415784|ref|YP_152859.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197364714|ref|YP_002144351.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|56130041|gb|AAV79547.1| lipopolysaccharide biosynthesis protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197096191|emb|CAR61787.1| lipopolysaccharide biosynthesis protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length=376
Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 114/170 (68%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E A+RI + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++ L + G + P IP+ C HNAHM+Y+ L ADR ++ L I AVFHY
Sbjct 262 QTYYDALTPLARAGRIELPSIPENCGHNAHMFYIKLRDIADRSALINFLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLHD PAG ++G G+ T + RL+RLP++ L VDQ V+ L
Sbjct 322 IPLHDCPAGDKFGEFIGDDVYTTKESERLLRLPLFYNLAPVDQRTVIATL 371
>gi|16762205|ref|NP_457822.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143694|ref|NP_807036.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|161617042|ref|YP_001591007.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
69 more sequence titles
Length=376
Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 114/170 (68%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E A+RI + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++ L + G + P IP+ C HNAHM+Y+ L ADR ++ L I AVFHY
Sbjct 262 QTYYDALTPLARAGRIELPSIPENCGHNAHMFYIKLRDIADRSALINFLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLHD PAG ++G G+ T + RL+RLP++ L VDQ V+ L
Sbjct 322 IPLHDCPAGDKFGEFIGDDVYTTKESERLLRLPLFYNLAPVDQRTVITTL 371
>gi|168244976|ref|ZP_02669908.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|194451216|ref|YP_002047945.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|204930195|ref|ZP_03221172.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|194409520|gb|ACF69739.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|204320599|gb|EDZ05801.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205336237|gb|EDZ23001.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
Length=376
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 113/170 (67%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E A+RI + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++ L G + P IP+ C HNAHM+Y+ L ADR ++ L I AVFHY
Sbjct 262 QTYYDALTPLAHAGRIELPSIPENCGHNAHMFYIKLRDIADRSALINFLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLHD PAG ++G G+ T + RL+RLP++ L VDQ V+ L
Sbjct 322 IPLHDCPAGDKFGEFIGDDVYTTKESERLLRLPLFYNLAPVDQRTVITTL 371
>gi|168234245|ref|ZP_02659303.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|194472376|ref|ZP_03078360.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|238912935|ref|ZP_04656772.1| TDP-4-oxo-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|194458740|gb|EDX47579.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|205331798|gb|EDZ18562.1| TDP-4-keto-6-deoxy-D-glucose transaminase [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
Length=376
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/170 (52%), Positives = 114/170 (68%), Gaps = 0/170 (0%)
Query 5 RAEILREKGTNRSRFLRNEVDKYTWQDKGSSYLPSELVAAFLWAQFEEAERITRIRLDLW 64
RAEI+REKGTNRS+F R +VDKYTW+D GSSYL S+L AA+LWAQ E A+RI + RL LW
Sbjct 202 RAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLW 261
Query 65 NRYHESFESLEQRGLLRRPIIPQGCSHNAHMYYVLLAPSADREEVLARLTSEGIGAVFHY 124
Y+++ L + G + P IP+ C HNAHM+Y+ L ADR ++ L I AVFHY
Sbjct 262 QTYYDALTPLARAGRIELPSIPENCGHNAHMFYIKLRDIADRSALINFLKEAEIMAVFHY 321
Query 125 VPLHDSPAGRRYGRTNGNLTVTNDVASRLIRLPMWVGLQEVDQSRVVEAL 174
+PLHD PAG ++G G+ T + RL+RLP++ L VDQ V+ L
Sbjct 322 IPLHDCPAGDKFGEFIGDDVYTTKESERLLRLPLFYNLAPVDQRTVITTL 371
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 164464225230
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40