BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1506c
Length=166
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840968|ref|NP_336005.1| hypothetical protein MT1554 [Mycoba... 337 5e-91
gi|15608644|ref|NP_216022.1| hypothetical protein Rv1506c [Mycob... 335 1e-90
gi|289447111|ref|ZP_06436855.1| conserved hypothetical protein [... 332 1e-89
gi|289569534|ref|ZP_06449761.1| LOW QUALITY PROTEIN: hypothetica... 317 5e-85
gi|183982335|ref|YP_001850626.1| hypothetical protein MMAR_2322 ... 276 1e-72
gi|330808323|ref|YP_004352785.1| SAM-binding motif-containing pr... 216 8e-55
gi|30250106|ref|NP_842176.1| SAM-binding motif-containing protei... 201 3e-50
gi|154253747|ref|YP_001414571.1| SAM-binding motif-containing pr... 201 4e-50
gi|116250571|ref|YP_766409.1| hypothetical protein RL0800 [Rhizo... 198 2e-49
gi|115350200|ref|YP_772039.1| SAM-binding motif-containing prote... 195 2e-48
gi|171320358|ref|ZP_02909398.1| SAM-binding motif containing pro... 193 5e-48
gi|172059222|ref|YP_001806874.1| SAM-binding motif-containing pr... 193 6e-48
gi|170698728|ref|ZP_02889793.1| SAM-binding motif containing pro... 192 1e-47
gi|254250928|ref|ZP_04944246.1| SAM-dependent methyltransferase ... 187 5e-46
gi|338782297|gb|EGP46672.1| SAM-binding motif-containing protein... 186 9e-46
gi|120613039|ref|YP_972717.1| SAM-binding motif-containing prote... 183 9e-45
gi|149177705|ref|ZP_01856306.1| SAM (and some other nucleotide) ... 162 1e-38
gi|218459410|ref|ZP_03499501.1| hypothetical protein RetlK5_0792... 131 4e-29
gi|146342904|ref|YP_001207952.1| putative S-adenosyl-L-methionin... 113 9e-24
gi|91792650|ref|YP_562301.1| methyltransferase type 12 [Shewanel... 84.7 4e-15
gi|109899363|ref|YP_662618.1| type 12 methyltransferase [Pseudoa... 83.6 1e-14
gi|344923649|ref|ZP_08777110.1| hypothetical protein COdytL_0325... 82.0 3e-14
gi|119469974|ref|ZP_01612779.1| hypothetical protein ATW7_05029 ... 79.0 2e-13
gi|83591987|ref|YP_425739.1| hypothetical protein Rru_A0648 [Rho... 77.0 1e-12
gi|110597168|ref|ZP_01385457.1| SAM (and some other nucleotide) ... 76.3 2e-12
gi|186681185|ref|YP_001864381.1| methyltransferase type 12 [Nost... 75.9 2e-12
gi|78485229|ref|YP_391154.1| hypothetical protein Tcr_0884 [Thio... 75.1 3e-12
gi|147918689|ref|YP_687588.1| hypothetical protein LRC45 [uncult... 73.6 8e-12
gi|147919371|ref|YP_686893.1| hypothetical protein RCIX2497 [unc... 72.0 3e-11
gi|158338853|ref|YP_001520030.1| hypothetical protein AM1_5766 [... 67.0 8e-10
gi|86147249|ref|ZP_01065564.1| SAM (and some other nucleotide) b... 65.5 2e-09
gi|291613075|ref|YP_003523232.1| methyltransferase type 12 [Side... 65.5 2e-09
gi|220930783|ref|YP_002507692.1| type 11 methyltransferase [Clos... 65.1 4e-09
gi|146298085|ref|YP_001192676.1| type 12 methyltransferase [Flav... 65.1 4e-09
gi|294085641|ref|YP_003552401.1| SAM-binding domain-containing p... 63.5 9e-09
gi|282164919|ref|YP_003357304.1| hypothetical protein MCP_2249 [... 62.4 2e-08
gi|300871580|ref|YP_003786453.1| methyltransferase type 11 [Brac... 62.0 3e-08
gi|296127074|ref|YP_003634326.1| methyltransferase type 12 [Brac... 62.0 3e-08
gi|303240519|ref|ZP_07327035.1| Methyltransferase type 11 [Aceti... 60.1 1e-07
gi|225621156|ref|YP_002722414.1| putative type 12 methyltransfer... 58.9 2e-07
gi|326203898|ref|ZP_08193760.1| Methyltransferase type 11 [Clost... 58.9 2e-07
gi|302392731|ref|YP_003828551.1| hypothetical protein Acear_1989... 58.5 3e-07
gi|343387541|gb|AEM23031.1| putative methyltransferase type 12 d... 58.2 4e-07
gi|206890797|ref|YP_002249744.1| hypothetical protein THEYE_A195... 58.2 4e-07
gi|114775641|ref|ZP_01451209.1| hypothetical protein SPV1_04913 ... 57.4 7e-07
gi|209809479|ref|YP_002265017.1| hypothetical protein VSAL_II070... 57.0 9e-07
gi|167620868|ref|ZP_02389499.1| hypothetical protein BthaB_31476... 56.2 2e-06
gi|83718558|ref|YP_443707.1| hypothetical protein BTH_I3213 [Bur... 56.2 2e-06
gi|114777246|ref|ZP_01452257.1| hypothetical protein SPV1_09273 ... 55.5 3e-06
gi|343493309|ref|ZP_08731636.1| putative cyclopropane fatty acid... 55.5 3e-06
>gi|15840968|ref|NP_336005.1| hypothetical protein MT1554 [Mycobacterium tuberculosis CDC1551]
gi|167969315|ref|ZP_02551592.1| hypothetical protein MtubH3_15335 [Mycobacterium tuberculosis
H37Ra]
gi|254231736|ref|ZP_04925063.1| hypothetical protein TBCG_01483 [Mycobacterium tuberculosis C]
23 more sequence titles
Length=172
Score = 337 bits (863), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/166 (100%), Positives = 166/166 (100%), Gaps = 0/166 (0%)
Query 1 VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF
Sbjct 7 VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 66
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA
Sbjct 67 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 126
Query 121 SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 166
SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS
Sbjct 127 SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 172
>gi|15608644|ref|NP_216022.1| hypothetical protein Rv1506c [Mycobacterium tuberculosis H37Rv]
gi|148661301|ref|YP_001282824.1| hypothetical protein MRA_1517 [Mycobacterium tuberculosis H37Ra]
gi|148822728|ref|YP_001287482.1| hypothetical protein TBFG_11537 [Mycobacterium tuberculosis F11]
28 more sequence titles
Length=166
Score = 335 bits (859), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/166 (99%), Positives = 166/166 (100%), Gaps = 0/166 (0%)
Query 1 VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+RIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF
Sbjct 1 MRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA
Sbjct 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
Query 121 SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 166
SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS
Sbjct 121 SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 166
>gi|289447111|ref|ZP_06436855.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289420069|gb|EFD17270.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=166
Score = 332 bits (851), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/166 (99%), Positives = 165/166 (99%), Gaps = 0/166 (0%)
Query 1 VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+RIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF
Sbjct 1 MRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA
Sbjct 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
Query 121 SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 166
SKMRDDLYYADPCALFDLCKRR SKSVALLHDYGLYEFTILVRKAS
Sbjct 121 SKMRDDLYYADPCALFDLCKRRSSKSVALLHDYGLYEFTILVRKAS 166
>gi|289569534|ref|ZP_06449761.1| LOW QUALITY PROTEIN: hypothetical protein TBJG_03723 [Mycobacterium
tuberculosis T17]
gi|289543288|gb|EFD46936.1| LOW QUALITY PROTEIN: hypothetical protein TBJG_03723 [Mycobacterium
tuberculosis T17]
Length=157
Score = 317 bits (811), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 155/157 (99%), Positives = 157/157 (100%), Gaps = 0/157 (0%)
Query 1 VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+RIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF
Sbjct 1 MRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA
Sbjct 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
Query 121 SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYE 157
SKMRDDLYYADPCALFDLCKRRYS+SVALLHDYGLYE
Sbjct 121 SKMRDDLYYADPCALFDLCKRRYSRSVALLHDYGLYE 157
>gi|183982335|ref|YP_001850626.1| hypothetical protein MMAR_2322 [Mycobacterium marinum M]
gi|183175661|gb|ACC40771.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=211
Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/165 (82%), Positives = 147/165 (90%), Gaps = 0/165 (0%)
Query 1 VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+RIV+ A FSI DLGCGYGALLDYLDARG + DYTGIDVSPEM RA A RF+GR +ADF
Sbjct 46 LRIVDVAGRFSIIDLGCGYGALLDYLDARGLEADYTGIDVSPEMARAGARRFQGRTDADF 105
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
IC +DREADYSVASGIFNVRL+ D EW ++EATLD+L+AASRRGF+FNCLTSYSDA
Sbjct 106 ICTTSVDREADYSVASGIFNVRLERSDAEWRDYLEATLDLLDAASRRGFAFNCLTSYSDA 165
Query 121 SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKA 165
SKMRDDLYYADPCALFDLCKRRYSK+VALLHDYGLYEFTILVRKA
Sbjct 166 SKMRDDLYYADPCALFDLCKRRYSKNVALLHDYGLYEFTILVRKA 210
>gi|330808323|ref|YP_004352785.1| SAM-binding motif-containing protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327376431|gb|AEA67781.1| Putative SAM-binding motif-containing protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length=210
Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 104/163 (64%), Positives = 126/163 (78%), Gaps = 0/163 (0%)
Query 2 RIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFI 61
+I+NA FSINDLGCGYGAL+DYL A Y G+D+S EM++AA R+ + A FI
Sbjct 47 KIINAPQAFSINDLGCGYGALVDYLKANNHTFSYLGVDISKEMIQAAKNRYVKDSQARFI 106
Query 62 CAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDAS 121
++ D ADYSVASGIFNVRL D+EW A++E TL++L+ SR GF+FNCLTSYSD
Sbjct 107 ESSEPDAVADYSVASGIFNVRLGRSDSEWLAYLENTLNILDRTSRLGFAFNCLTSYSDED 166
Query 122 KMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
+ R+DLYYADPC LFDLCKRRYS+ VALLHDYGLYEFT+LVRK
Sbjct 167 RKREDLYYADPCRLFDLCKRRYSRHVALLHDYGLYEFTLLVRK 209
>gi|30250106|ref|NP_842176.1| SAM-binding motif-containing protein [Nitrosomonas europaea ATCC
19718]
gi|30139213|emb|CAD86083.1| SAM (and some other nucleotide) binding motif [Nitrosomonas europaea
ATCC 19718]
Length=212
Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/156 (65%), Positives = 115/156 (74%), Gaps = 0/156 (0%)
Query 10 FSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARIDRE 69
FS+NDLGCGYGALLDYL + Y G+DVS EM++AA R A FI + D+
Sbjct 57 FSLNDLGCGYGALLDYLRDKYAACIYLGVDVSHEMIKAARQRHTAANQARFITSTEPDQV 116
Query 70 ADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDLYY 129
ADY VASGIFNVRL+ D EW ++ TLD+LN S GF+FNCLTSYSD K RD LYY
Sbjct 117 ADYGVASGIFNVRLERTDAEWFDYLLGTLDVLNRTSSLGFAFNCLTSYSDEDKKRDYLYY 176
Query 130 ADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKA 165
ADPC LFDLCKRRYS+ VALLHDYGLYEFTIL+RKA
Sbjct 177 ADPCRLFDLCKRRYSRQVALLHDYGLYEFTILIRKA 212
>gi|154253747|ref|YP_001414571.1| SAM-binding motif-containing protein [Parvibaculum lavamentivorans
DS-1]
gi|154157697|gb|ABS64914.1| SAM (and some other nucleotide) binding motif [Parvibaculum lavamentivorans
DS-1]
Length=215
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/163 (61%), Positives = 114/163 (70%), Gaps = 0/163 (0%)
Query 2 RIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFI 61
++V + FS+NDLG GYGAL YLD R Y G DVS MV AA +F NA F
Sbjct 52 KVVASGPAFSVNDLGAGYGALFSYLDTRYADVSYFGYDVSESMVMAARRQFGHARNATFS 111
Query 62 CAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDAS 121
++ ADY +ASGIFNVRL D EW ++IE TLD L+ SR GFSFNCLTSYSD
Sbjct 112 VSSTPQTSADYGMASGIFNVRLGRADAEWRSYIEQTLDQLHRTSRLGFSFNCLTSYSDKD 171
Query 122 KMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
KMR LYYADPC LFD+CK++YS+ VALLHDYGLYEFTILVRK
Sbjct 172 KMRPHLYYADPCELFDICKKKYSRQVALLHDYGLYEFTILVRK 214
>gi|116250571|ref|YP_766409.1| hypothetical protein RL0800 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255219|emb|CAK06294.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length=198
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/164 (58%), Positives = 119/164 (73%), Gaps = 0/164 (0%)
Query 1 VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+++V+++ P+SI D+GCGYGALLD+L G T Y G+D++ M+ AA R + F
Sbjct 35 LKVVDSSQPYSIADIGCGYGALLDHLSQLGHATRYIGVDIALPMIEAARSRIAASPDVTF 94
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
A DYSVASGIFNVRL D EW A++ TLDM+N +SR GFSFNCLTSYSDA
Sbjct 95 RLANSPGEIVDYSVASGIFNVRLGRTDEEWLAYLVETLDMMNISSRTGFSFNCLTSYSDA 154
Query 121 SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
+MR DL+YA+P LFDLCKRRYS+ VALLHDY LYEFT++VRK
Sbjct 155 DRMRGDLFYANPLDLFDLCKRRYSRRVALLHDYELYEFTMIVRK 198
>gi|115350200|ref|YP_772039.1| SAM-binding motif-containing protein [Burkholderia ambifaria
AMMD]
gi|115280188|gb|ABI85705.1| SAM-binding motif containing protein [Burkholderia ambifaria
AMMD]
Length=216
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/165 (63%), Positives = 116/165 (71%), Gaps = 3/165 (1%)
Query 3 IVNAADPFSINDLGCGYGALLDYLD--ARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+ AAD FS+NDLGCGYGAL+D+LD A G Y G DVSPEM+ AA R+ RA+ F
Sbjct 50 VAPAADGFSVNDLGCGYGALVDFLDEHAAGRSHAYAGNDVSPEMIDAARQRYRDRADVAF 109
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
ADY +ASGIFNV D W +I ATLD L+A SR GF+FNCLTSYSD
Sbjct 110 HVGDTPSSVADYGIASGIFNVHRGHGDDAWLDYIHATLDTLHATSRLGFAFNCLTSYSDP 169
Query 121 SKMRDD-LYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
MR + LYYADPCALFD CKRRYS+ VALLHDYGLYEFTILVRK
Sbjct 170 PHMRPERLYYADPCALFDRCKRRYSRHVALLHDYGLYEFTILVRK 214
>gi|171320358|ref|ZP_02909398.1| SAM-binding motif containing protein [Burkholderia ambifaria
MEX-5]
gi|171094405|gb|EDT39469.1| SAM-binding motif containing protein [Burkholderia ambifaria
MEX-5]
Length=216
Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/165 (62%), Positives = 115/165 (70%), Gaps = 3/165 (1%)
Query 3 IVNAADPFSINDLGCGYGALLDYLD--ARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+ AAD FS+NDLGCGYGAL+D+LD A G Y G DVSPEM+ AA R+ R + F
Sbjct 50 VAPAADGFSVNDLGCGYGALVDFLDEHAAGRSHAYAGNDVSPEMIDAARQRYRDRGDVSF 109
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
ADY +ASGIFNV D W ++ ATLD L+A SR GF+FNCLTSYSD
Sbjct 110 HVGDTPSSVADYGIASGIFNVHRGHGDDAWLDYLHATLDTLHATSRLGFAFNCLTSYSDP 169
Query 121 SKMRDD-LYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
MR + LYYADPCALFD CKRRYS+ VALLHDYGLYEFTILVRK
Sbjct 170 PHMRPERLYYADPCALFDRCKRRYSRHVALLHDYGLYEFTILVRK 214
>gi|172059222|ref|YP_001806874.1| SAM-binding motif-containing protein [Burkholderia ambifaria
MC40-6]
gi|171991739|gb|ACB62658.1| SAM-binding motif containing protein [Burkholderia ambifaria
MC40-6]
Length=216
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/165 (62%), Positives = 115/165 (70%), Gaps = 3/165 (1%)
Query 3 IVNAADPFSINDLGCGYGALLDYLD--ARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+ AAD FS+NDLGCGYGAL+D+LD A G Y G DVSPEM+ AA R+ R + F
Sbjct 50 VAPAADGFSVNDLGCGYGALVDFLDEHAAGRSHAYAGNDVSPEMIDAARQRYRDRGDVSF 109
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
+DY +ASGIFNV D W +I ATLD L+A SR GF+FNCLTSYSD
Sbjct 110 HVGDTPSSVSDYGIASGIFNVHRGHGDDAWLDYIHATLDTLHATSRLGFAFNCLTSYSDP 169
Query 121 SKMRDD-LYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
MR + LYYADPCALFD CKRRYS+ VALLHDYGLYEFTILVRK
Sbjct 170 PHMRPERLYYADPCALFDRCKRRYSRHVALLHDYGLYEFTILVRK 214
>gi|170698728|ref|ZP_02889793.1| SAM-binding motif containing protein [Burkholderia ambifaria
IOP40-10]
gi|170136353|gb|EDT04616.1| SAM-binding motif containing protein [Burkholderia ambifaria
IOP40-10]
Length=216
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/165 (61%), Positives = 115/165 (70%), Gaps = 3/165 (1%)
Query 3 IVNAADPFSINDLGCGYGALLDYLD--ARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+ AAD FS+NDLGCGYGAL+D+LD A G Y G DVSPEM+ AA R+ R + F
Sbjct 50 VAPAADGFSVNDLGCGYGALVDFLDEHAAGRSHAYAGNDVSPEMIDAARQRYRDRGDVSF 109
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
+DY +ASGIFNV D W ++ ATLD L+A SR GF+FNCLTSYSD
Sbjct 110 HVGDTPSSVSDYGIASGIFNVHRGHGDDAWLDYLHATLDTLHATSRLGFAFNCLTSYSDP 169
Query 121 SKMRDD-LYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
MR + LYYADPCALFD CKRRYS+ VALLHDYGLYEFTILVRK
Sbjct 170 PHMRPERLYYADPCALFDRCKRRYSRHVALLHDYGLYEFTILVRK 214
>gi|254250928|ref|ZP_04944246.1| SAM-dependent methyltransferase [Burkholderia dolosa AUO158]
gi|124893537|gb|EAY67417.1| SAM-dependent methyltransferase [Burkholderia dolosa AUO158]
Length=327
Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/165 (59%), Positives = 115/165 (70%), Gaps = 3/165 (1%)
Query 3 IVNAADPFSINDLGCGYGALLDYLD--ARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
+ AD FS+ND+GCGYGAL+D+LD A G + Y G D+S EM+ AA R+ RAN F
Sbjct 161 VAPGADGFSVNDVGCGYGALVDFLDEHAGGRRHTYAGNDISAEMIDAARQRYRDRANVSF 220
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
+DY++ASGIFNV W +I ATLD+L+ SR GF+FNCLTSYSD
Sbjct 221 DVGDTPRTISDYTIASGIFNVHRGHDADAWLDYIHATLDVLHDTSRAGFAFNCLTSYSDP 280
Query 121 SKMRDD-LYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
MR + LYYADPCALFD CKRRYS+ VALLHDYGLYEFTILVRK
Sbjct 281 PHMRPERLYYADPCALFDRCKRRYSRHVALLHDYGLYEFTILVRK 325
>gi|338782297|gb|EGP46672.1| SAM-binding motif-containing protein [Achromobacter xylosoxidans
AXX-A]
Length=213
Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/158 (57%), Positives = 111/158 (71%), Gaps = 0/158 (0%)
Query 9 PFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARIDR 68
P+S+NDLGCGYGA D+L Y G D+S EM+ A R NA ++ + D
Sbjct 56 PYSVNDLGCGYGAFFDFLTQESRNFRYAGFDISGEMIEACRNRHGDADNARYVTTSEPDE 115
Query 69 EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDLY 128
AD+ +ASGIFNVRL EW +IE TL++L S RGF+FNCLTSYSDA +MR DL+
Sbjct 116 PADFGIASGIFNVRLDHDPGEWQQYIEDTLEILARTSERGFAFNCLTSYSDADRMRPDLH 175
Query 129 YADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 166
YA+P ALFDLCK RYS++VALLHDY LYEFTILVRK++
Sbjct 176 YANPLALFDLCKTRYSRNVALLHDYDLYEFTILVRKSA 213
>gi|120613039|ref|YP_972717.1| SAM-binding motif-containing protein [Acidovorax citrulli AAC00-1]
gi|120591503|gb|ABM34943.1| SAM (and some other nucleotide) binding motif protein [Acidovorax
citrulli AAC00-1]
Length=218
Score = 183 bits (464), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 94/156 (61%), Positives = 110/156 (71%), Gaps = 0/156 (0%)
Query 9 PFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARIDR 68
P ++NDLGCGYGALLD+L G+ DY GID+S MV+AA R G ANA F A R
Sbjct 60 PTTLNDLGCGYGALLDFLVETGWNIDYEGIDLSASMVQAAQARHAGVANARFRVGAACTR 119
Query 69 EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDLY 128
ADYSVASG+FNVR + W I TLD L+ +SRRGF+FNCLTSYSDA KM+ L+
Sbjct 120 MADYSVASGLFNVRQEVPVPLWEKFIHDTLDDLDRSSRRGFAFNCLTSYSDAEKMKPHLH 179
Query 129 YADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
Y P +F CK R+S+ VALLHDYGLYEFTILVRK
Sbjct 180 YCVPEEIFRHCKTRFSRHVALLHDYGLYEFTILVRK 215
>gi|149177705|ref|ZP_01856306.1| SAM (and some other nucleotide) binding motif [Planctomyces maris
DSM 8797]
gi|148843523|gb|EDL57885.1| SAM (and some other nucleotide) binding motif [Planctomyces maris
DSM 8797]
Length=208
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/165 (50%), Positives = 110/165 (67%), Gaps = 3/165 (1%)
Query 1 VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF 60
++I N FSIND GCGYGAL +YL + + Y G D+S M+ A +F G N
Sbjct 44 LKICNHHSQFSINDFGCGYGALAEYLINQNYSFQYYGYDISDLMLNQARNKF-GIVNNHI 102
Query 61 ICAARIDR--EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYS 118
+I + E+DY+VASGIFNV+ + ++W +++ ATL+ ++ SR GF+FN LT YS
Sbjct 103 SFTDQISKVPESDYTVASGIFNVKQDTSTSDWESYLLATLEDISNLSRLGFAFNILTKYS 162
Query 119 DASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVR 163
D KMR DLYY DPC LFD CK +S++VA+LHDY LYEFT++VR
Sbjct 163 DEEKMRPDLYYGDPCFLFDYCKTNFSRNVAILHDYDLYEFTVIVR 207
>gi|218459410|ref|ZP_03499501.1| hypothetical protein RetlK5_07922 [Rhizobium etli Kim 5]
Length=213
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/153 (41%), Positives = 93/153 (61%), Gaps = 0/153 (0%)
Query 11 SINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARIDREA 70
S++++GCGYGAL Y+ + +Y G D+S M+ AAA F A + R
Sbjct 57 SLSEIGCGYGALAVYMRQKNLDFEYVGCDISTSMLEAAAEHCRSVDKVSFEQATKPRRPV 116
Query 71 DYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDLYYA 130
DY VASGIFNVR + W ++ T+D + A++ +G +FNCLT++SDA MR +L+Y
Sbjct 117 DYVVASGIFNVRFDYDEKVWLQYVWDTIDDMAASAHKGIAFNCLTAHSDADHMRSNLWYP 176
Query 131 DPCALFDLCKRRYSKSVALLHDYGLYEFTILVR 163
DP + + C + + + V+L HDY LYEFT+ +R
Sbjct 177 DPGYVLNHCLKEFGRRVSLAHDYNLYEFTVRIR 209
>gi|146342904|ref|YP_001207952.1| putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase
[Bradyrhizobium sp. ORS 278]
gi|146195710|emb|CAL79737.1| putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase
[Bradyrhizobium sp. ORS 278]
Length=232
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/171 (39%), Positives = 98/171 (58%), Gaps = 6/171 (3%)
Query 1 VRIVNAADPFSINDLGCGYGALLDYLDAR--GFKTDYTGIDVSPEMVRAAALRFEGRANA 58
+++ +A+ PFS+ND+GCGYGAL+ +L R + DY GID+S M+ A R+ G
Sbjct 57 MKLCDASAPFSLNDIGCGYGALVPFLATRFAANEIDYLGIDLSRAMISRARRRYAG-PQR 115
Query 59 DFICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYS 118
F A R ADYSVASGI NV + W ++ A L ++A SRRGF+ N +++
Sbjct 116 RFAVGAASPRIADYSVASGIMNVNVGHAREAWEDYVRAMLARMDATSRRGFAVNFVSAIE 175
Query 119 DAS---KMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 166
+A LY P C+R ++ V ++ +YG+ EFT+LVR+AS
Sbjct 176 EAPDSDPATTRLYRTTPDIWAAHCERAFAAQVEVIGNYGMKEFTLLVRRAS 226
>gi|91792650|ref|YP_562301.1| methyltransferase type 12 [Shewanella denitrificans OS217]
gi|91714652|gb|ABE54578.1| Methyltransferase type 12 [Shewanella denitrificans OS217]
Length=209
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/163 (37%), Positives = 78/163 (48%), Gaps = 16/163 (9%)
Query 11 SINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF----ICAARI 66
+I DLGCG +L YL GF Y G D PE + A ++ NA F I I
Sbjct 48 NIIDLGCGLADMLPYLRQNGFTGKYLGCDFVPEFIELAKGKYGEDLNAKFMEFNILQDEI 107
Query 67 DREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDD 126
DY + SGIFN ++K+ + E+ IE L A G FN L+ Y +
Sbjct 108 PTGYDYVLISGIFNNKIKN-NQEF---IELALKESMAKVNIGVVFNALSDY--VQYQDET 161
Query 127 LYYADPCALFDLCKRRYSKSVALLHDY-----GL-YEFTILVR 163
L+Y P +LFD CKR + V L HDY G YEFT+ +R
Sbjct 162 LFYISPLSLFDYCKRNITPYVTLKHDYLTKPGGFPYEFTMSLR 204
>gi|109899363|ref|YP_662618.1| type 12 methyltransferase [Pseudoalteromonas atlantica T6c]
gi|109701644|gb|ABG41564.1| Methyltransferase type 12 [Pseudoalteromonas atlantica T6c]
Length=208
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/164 (31%), Positives = 83/164 (51%), Gaps = 5/164 (3%)
Query 3 IVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRA--NADF 60
IV+A S+ D+GCG+ LL YL + DY+GIDV+ M+ + F AD
Sbjct 45 IVDATTKASMLDVGCGFAGLLSYLKEQSLNIDYSGIDVAQNMLSHSRKTFPDNQFIEAD- 103
Query 61 ICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDA 120
I + + D + DY V +GI +L + + A++E + + S G +FN +T +
Sbjct 104 ILSHQFDCKYDYVVCNGILTQKLTASQSSMTAYMEKLIKTMFEISNIGIAFNIMTDRVNF 163
Query 121 SKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
D+L+Y P AL C ++ + + H Y +YE+T+ + K
Sbjct 164 K--VDNLFYKSPEALIAFCLDNITRHIKIDHAYPMYEYTVYLYK 205
>gi|344923649|ref|ZP_08777110.1| hypothetical protein COdytL_03250 [Candidatus Odyssella thessalonicensis
L13]
Length=216
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/165 (34%), Positives = 84/165 (51%), Gaps = 14/165 (8%)
Query 6 AADPFSINDLGCGYGALLDYL--DARGFKTDYTGIDVSPEMVRAAALRFEGRANA--DFI 61
+P SI D+GCGYGA LDYL +++ Y+GID+S M+ A + D +
Sbjct 54 GVNPRSIVDVGCGYGAFLDYLLTNSKQAARGYSGIDLSEPMIEWARKAYPSHPFTCQDIL 113
Query 62 CAARIDREADYSVASGIFNVRLKSLDTEWCAHIEA----TLDMLNAASRRGFSFNCLTSY 117
D + +Y V +G+ +L +L E H+E + L A R G +FN ++S+
Sbjct 114 KTPLNDNQFEYGVMNGVLTEKL-NLSFE---HMETFAHRIIKTLFQACRHGIAFNVMSSH 169
Query 118 SDASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILV 162
D RDDL++ L D + S+ + HDYGLYE+T+ V
Sbjct 170 VDWQ--RDDLFHLPLDRLADFLTKNCSRHWQIRHDYGLYEYTVYV 212
>gi|119469974|ref|ZP_01612779.1| hypothetical protein ATW7_05029 [Alteromonadales bacterium TW-7]
gi|119446684|gb|EAW27957.1| hypothetical protein ATW7_05029 [Alteromonadales bacterium TW-7]
Length=170
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/164 (32%), Positives = 79/164 (49%), Gaps = 16/164 (9%)
Query 12 INDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADF----ICAARID 67
+ DLGCG G +L YL GF +Y G D PE + A+ +F A A F I I
Sbjct 8 VIDLGCGLGDMLLYLRKNGFTGEYLGYDFVPEFIDVASAKFSSDAKAQFEVFDIYKDEIA 67
Query 68 READYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDL 127
+ D+ + SG+FN ++ T+ + TL + FN L+++ + + L
Sbjct 68 QGYDHVLISGVFNNKM----TDNMDFLTLTLQKSIRQCEQSVIFNALSTFVEFK--NEAL 121
Query 128 YYADPCALFDLCKRRYSKSVALLHDYGL------YEFTILVRKA 165
+Y P LF+LCK + V+L HDY YEFT+ + K+
Sbjct 122 FYVSPLELFELCKTTMTPFVSLKHDYVTKPGGYPYEFTMQLSKS 165
>gi|83591987|ref|YP_425739.1| hypothetical protein Rru_A0648 [Rhodospirillum rubrum ATCC 11170]
gi|83574901|gb|ABC21452.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
Length=212
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/161 (37%), Positives = 79/161 (50%), Gaps = 10/161 (6%)
Query 4 VNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFE-GR---ANAD 59
V A S+ D+GCG G LL +LDA G DYTG+D++PEM+ ++ GR N
Sbjct 44 VGLASGHSVLDVGCGLGDLLPWLDAAGLAVDYTGLDMTPEMISHCRATYDHGRFLEGNLL 103
Query 60 FICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSD 119
A R D+ VASGIF R + A I A D+ ++RG +FN S S
Sbjct 104 DASAGFAPRSFDWVVASGIFAHRKEKPWEYMTALIRAMADL----AKRGIAFNA-QSLSG 158
Query 120 ASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTI 160
+ LY+ADP C+ SV L HD+ +FTI
Sbjct 159 PNPQTWLLYHADPDETIAFCE-SLGWSVRLTHDWRKTDFTI 198
>gi|110597168|ref|ZP_01385457.1| SAM (and some other nucleotide) binding motif [Chlorobium ferrooxidans
DSM 13031]
gi|110341359|gb|EAT59824.1| SAM (and some other nucleotide) binding motif [Chlorobium ferrooxidans
DSM 13031]
Length=210
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 7/150 (4%)
Query 11 SINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEG--RANADFICAARIDR 68
S+ D+GCG +L +G YTG+D+ PE++ A + + D +
Sbjct 52 SVLDVGCGLADFYAHLIGKGINVHYTGVDIVPELIDEARIAYPALDLRTLDLQDEPFPAK 111
Query 69 EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDLY 128
DY V S +FN+RL+ E A ++ L ++ +R G + + LTSY D + + LY
Sbjct 112 SYDYVVCSQVFNLRLEKEKNE--ALVQDMLRVMFNIARSGVAVDLLTSYVDFQQ--EHLY 167
Query 129 YADPCALFDLCKRRYSKSVALLHDYGLYEF 158
Y P LF K + ++ V L HDY L+EF
Sbjct 168 YYQPEKLFSFAK-QLTRRVTLRHDYPLFEF 196
>gi|186681185|ref|YP_001864381.1| methyltransferase type 12 [Nostoc punctiforme PCC 73102]
gi|186463637|gb|ACC79438.1| Methyltransferase type 12 [Nostoc punctiforme PCC 73102]
Length=220
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/164 (33%), Positives = 78/164 (48%), Gaps = 14/164 (8%)
Query 11 SINDLGCGYGALLDYLDAR-GFKTDYTGIDVSPEMVRAAALRFEG-RANADFICAARIDR 68
I D GCG G LL +L F +Y G DVS M++ A +F + + + I
Sbjct 56 KILDFGCGTGHLLTFLQKELEFVGEYIGYDVSEGMIKLAQNKFPKYKFEQRDVLSEGIPE 115
Query 69 EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDLY 128
+ DY + +G+FN RL W + A L L + +R +FN L++Y D D L+
Sbjct 116 DFDYILINGVFNNRLSD---NWGI-MTALLKTLFSHTRCVLAFNALSTYVDY--FNDGLF 169
Query 129 YADPCALFDLCKRRYSKSVALLHDYGL------YEFTILVRKAS 166
Y +P +F CK S V L HDY + +EFT+ V A
Sbjct 170 YVNPDQVFHFCKEELSPCVTLRHDYLIKPETVPFEFTVYVYNAK 213
>gi|78485229|ref|YP_391154.1| hypothetical protein Tcr_0884 [Thiomicrospira crunogena XCL-2]
gi|78363515|gb|ABB41480.1| Conserved hypothetical protein with a SAM-binding domain [Thiomicrospira
crunogena XCL-2]
Length=217
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/153 (31%), Positives = 76/153 (50%), Gaps = 4/153 (2%)
Query 14 DLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEG--RANADFICAARIDREAD 71
D+GCG+G L YL GF+ YTGIDVSP+MV+A + + + + + D
Sbjct 64 DVGCGFGDLSPYLKTAGFQVAYTGIDVSPDMVQAGQFKHQDIRLLHGELFDFDWAEASFD 123
Query 72 YSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDLYYAD 131
+ V SG N + E +A + + SR+G FN L + + + R DL
Sbjct 124 WVVCSGAMNEVVDPHGRE-GESAQAMIQKMYTLSRKGVVFNLLNAAHEWTNSRPDLQSFG 182
Query 132 PCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
P A+ D C+ +++ V++ DY +FT+ + K
Sbjct 183 PQAITDFCE-KFATQVSVKQDYLPNDFTVCLTK 214
>gi|147918689|ref|YP_687588.1| hypothetical protein LRC45 [uncultured methanogenic archaeon
RC-I]
gi|110622984|emb|CAJ38262.1| conserved hypothetical protein [uncultured methanogenic archaeon
RC-I]
Length=210
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/166 (35%), Positives = 85/166 (52%), Gaps = 17/166 (10%)
Query 4 VNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICA 63
+ D SI D+GCG+G L +L RG K DYTGID++P+ + A + G A FI
Sbjct 44 IGGLDGCSILDVGCGFGDLYGFLVGRGLKVDYTGIDINPKFIEIARREYPG---ARFIAG 100
Query 64 ARID----READYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFN-CLTSYS 118
D E D++ A+GIF +R+ D E A ++ L + AASR+G + + L +YS
Sbjct 101 DFDDCCPGEEYDWAFAAGIFTIRIS--DNE--AFAKSMLQKMLAASRKGIAVDFLLPTYS 156
Query 119 DASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
+D + P + C R S+ VAL DY E+ + V K
Sbjct 157 G----QDTYWRPAPEDMLRFC-RTLSRRVALRCDYMADEYCVYVYK 197
>gi|147919371|ref|YP_686893.1| hypothetical protein RCIX2497 [uncultured methanogenic archaeon
RC-I]
gi|110622289|emb|CAJ37567.1| conserved hypothetical protein [uncultured methanogenic archaeon
RC-I]
Length=225
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/165 (32%), Positives = 80/165 (49%), Gaps = 14/165 (8%)
Query 4 VNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICA 63
+ D SI D+GCG+ L +L RG DYTGID++PE + A R+ +A FI
Sbjct 44 IGDLDGSSILDVGCGFADLYGFLRDRGISVDYTGIDLNPEFIEIAKSRY---PDARFIVG 100
Query 64 ----ARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSD 119
+I D++ GIFN+++ E +E TL + + +G + + L+ S
Sbjct 101 DFEETKIPGRFDWAFECGIFNLKVH----EHRPFVENTLRKMFKMASKGIAADFLSPAS- 155
Query 120 ASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
+ ++Y+ DP + C R SK V L DY EF + V K
Sbjct 156 -YDLTGEMYHPDPLEMVRYCN-RLSKRVVLRCDYKPTEFCVYVYK 198
>gi|158338853|ref|YP_001520030.1| hypothetical protein AM1_5766 [Acaryochloris marina MBIC11017]
gi|158309094|gb|ABW30711.1| hypothetical protein AM1_5766 [Acaryochloris marina MBIC11017]
Length=225
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/168 (29%), Positives = 77/168 (46%), Gaps = 9/168 (5%)
Query 6 AADPFSIN------DLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANAD 59
A DP+ I D GCG G L +YL+ GF+ +YTGID+ P + A ++ AN
Sbjct 39 AIDPYLIRSNVRVLDYGCGLGYLYEYLNQSGFEVNYTGIDILPSFINACRDKYPDCANFH 98
Query 60 FI-CAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYS 118
I + I E D ASG+FN+ + ++ + L +R + L+ Y
Sbjct 99 QIEPESNITGEYDVVFASGVFNLVSSKDEESSKSYAYNRIKHLFEITREVLVCDFLSPYV 158
Query 119 DASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 166
D + + D A +LC + ++ + HD YEFT++ + S
Sbjct 159 DFKQELAQHFSIDEIA--NLCSKSLTRRFMIRHDLLPYEFTLIAHQKS 204
>gi|86147249|ref|ZP_01065564.1| SAM (and some other nucleotide) binding motif protein [Vibrio
sp. MED222]
gi|85834964|gb|EAQ53107.1| SAM (and some other nucleotide) binding motif protein [Vibrio
sp. MED222]
Length=209
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/160 (28%), Positives = 77/160 (49%), Gaps = 11/160 (6%)
Query 11 SINDLGCGYGALLDYL-DARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARIDRE 69
S+ D GCG +YL D DY+G+D+S + V + +F G + + C ++ +
Sbjct 55 SLLDFGCGASHFFEYLKDVELNNVDYSGLDISRKFVTLSKEKFPGNS---YYCVDILNND 111
Query 70 A-----DYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMR 124
DY++ +G+F + E + +A L + A G +FN ++ D R
Sbjct 112 TELPQFDYAILNGVFTEKCDLSFEEMLSFFKAVLTRVFAKVNIGMAFNVMSKNVDWE--R 169
Query 125 DDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
DDL++ L + + S+ + +DYGLYE+T+ V K
Sbjct 170 DDLFHLSLDLLTEFLSKNVSRKYIIRNDYGLYEYTVYVYK 209
>gi|291613075|ref|YP_003523232.1| methyltransferase type 12 [Sideroxydans lithotrophicus ES-1]
gi|291583187|gb|ADE10845.1| Methyltransferase type 12 [Sideroxydans lithotrophicus ES-1]
Length=213
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/167 (29%), Positives = 75/167 (45%), Gaps = 13/167 (7%)
Query 8 DP--FSINDLGCGYGALLDY-LDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAA 64
DP ++ D GCG L Y L+ R +Y G+D SP + +F D+ C
Sbjct 49 DPAGLTLLDFGCGASHLYPYMLNTRFAALEYHGLDASPAFCELSRSKF---PQIDYTCLD 105
Query 65 RIDREA-----DYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSD 119
+D DY V +G+F + + E + + L ++ RRG +FN ++ D
Sbjct 106 VLDAPERLCKFDYVVMNGVFTEKRELAFDEMFEYFKQVLRIVFPKVRRGMAFNVMSKAVD 165
Query 120 ASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 166
RDDL++ L + S+ + +DYGLYE+T+ V K
Sbjct 166 WE--RDDLFHLPADPLIAFLTKELSRHFVIRNDYGLYEYTVYVYKEP 210
>gi|220930783|ref|YP_002507692.1| type 11 methyltransferase [Clostridium cellulolyticum H10]
gi|220001111|gb|ACL77712.1| Methyltransferase type 11 [Clostridium cellulolyticum H10]
Length=203
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/163 (33%), Positives = 81/163 (50%), Gaps = 19/163 (11%)
Query 12 INDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARI----- 66
I D+GCG G LL+Y+ R +YTG+D+ P MV A E + FIC
Sbjct 51 ILDVGCGTGNLLEYISKRFTAFEYTGVDILPHMVNIAT---EKKLKGKFICMDLFKNNPF 107
Query 67 -DREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRD 125
D+ D +SGIFN+ L + + E+ I+A L++ S +FN L D S R+
Sbjct 108 QDKSVDVIFSSGIFNLNLGN-NKEFL--IDA-LNVFQQLSNGTIAFNLLW---DKSPDRE 160
Query 126 DLY-YADPCALFDLCKRRYSK--SVALLHDYGLYEFTILVRKA 165
D Y Y DP + L +Y +V++L Y +FT+++ +
Sbjct 161 DKYFYFDPDKVKGLLTEKYGGYWTVSILKGYLNNDFTVILEEK 203
>gi|146298085|ref|YP_001192676.1| type 12 methyltransferase [Flavobacterium johnsoniae UW101]
gi|146152503|gb|ABQ03357.1| Methyltransferase type 12 [Flavobacterium johnsoniae UW101]
Length=210
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/161 (27%), Positives = 75/161 (47%), Gaps = 11/161 (6%)
Query 11 SINDLGCGYGALLDYLDARGFKT-DYTGIDVSPEMVRAAALRFEGRANADFICAARIDRE 69
S+ D GCG LL+Y+ T DY+G+D+S + + A ++ N F C + E
Sbjct 55 SLLDFGCGTSHLLEYIHKNEMSTIDYSGLDISQKFINVAKNKY---PNNTFYCLDIFESE 111
Query 70 A-----DYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMR 124
DY + +G+F + E + L ++ + +GF+FN ++ D R
Sbjct 112 NCLGNFDYIIMNGVFTEKNSLSYEEMWEYFTNMLRVIYKKADKGFAFNVMSKNVDWE--R 169
Query 125 DDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKA 165
DL++ L +++ + +DYGLYE+T+ V K
Sbjct 170 QDLFHVPHDQLSSFLCNNLTRNYIIRNDYGLYEYTVYVLKK 210
>gi|294085641|ref|YP_003552401.1| SAM-binding domain-containing protein [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665216|gb|ADE40317.1| SAM-binding motif containing protein [Candidatus Puniceispirillum
marinum IMCC1322]
Length=224
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/163 (29%), Positives = 78/163 (48%), Gaps = 5/163 (3%)
Query 6 AADPFSINDLGCGYGALLDYLDARG--FKTDYTGIDVSPEMVRAAALRFEGRANADFICA 63
A SI D+GCGYGA+L++++ Y G+D++P M+ A F A+ F C
Sbjct 65 APRTLSIADIGCGYGAMLEFINTHPQFAHLRYMGLDINPVMIAACQDNFPT-ASHLFTCG 123
Query 64 ARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKM 123
+ D+SV SG FN+ W A++ A LD SR G + N L + +K+
Sbjct 124 KKPVSIVDFSVFSGTFNLCHIDDTRRWEAYMFACLDSCWQNSRMGMALNLLC--APETKI 181
Query 124 RDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKAS 166
++++YA+ R+ + A+ ++T L+ + S
Sbjct 182 SNNIFYANRDDFISKASARFGPTRAIATREVKEDYTFLITRNS 224
>gi|282164919|ref|YP_003357304.1| hypothetical protein MCP_2249 [Methanocella paludicola SANAE]
gi|282157233|dbj|BAI62321.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length=213
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/160 (32%), Positives = 81/160 (51%), Gaps = 19/160 (11%)
Query 11 SINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICA----ARI 66
S+ D+GCG+G L YL RG DYTGID++P+ +R A E +A F+ A I
Sbjct 51 SVLDVGCGFGDLYGYLCRRGINVDYTGIDINPDFIRIAR---EAYPDARFMVADFEEDDI 107
Query 67 DREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDD 126
+ D++ A+GIF +++ ++ I+ TL+ + RG + + L+ S + +D
Sbjct 108 GGDFDWAFAAGIFTIKI----SDNRRFIKNTLNKMFKVCNRGLAADFLSP----SALGND 159
Query 127 LYYADPCALFDLCK--RRYSKSVALLHDYGLYEFTILVRK 164
Y+ C D+ K R SK L DY E+ I + K
Sbjct 160 AYWQ--CPPEDVLKFCRSLSKRAVLRADYMSTEYCIYLYK 197
>gi|300871580|ref|YP_003786453.1| methyltransferase type 11 [Brachyspira pilosicoli 95/1000]
gi|300689281|gb|ADK31952.1| Methyltransferase type 11 [Brachyspira pilosicoli 95/1000]
Length=211
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/106 (37%), Positives = 54/106 (51%), Gaps = 9/106 (8%)
Query 14 DLGCGYGALLDYLDARGFKTDYTGIDVSPEMV-RAAALRFEGRA----NADFICAARIDR 68
D+GCG G+L +Y+D Y GID+ PEMV RA + ++ + DF I
Sbjct 56 DVGCGVGSLAEYIDKNNINLYYIGIDIMPEMVERAKSKNYKNISPQFMTMDFFKKTDIKD 115
Query 69 EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCL 114
+ DY SGIFN+ L + + IEA L A+R+G FN L
Sbjct 116 DVDYIYTSGIFNLNLGNNEEFLKEAIEAFL----LAARKGVCFNLL 157
>gi|296127074|ref|YP_003634326.1| methyltransferase type 12 [Brachyspira murdochii DSM 12563]
gi|296018890|gb|ADG72127.1| Methyltransferase type 12 [Brachyspira murdochii DSM 12563]
Length=211
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/106 (35%), Positives = 56/106 (53%), Gaps = 9/106 (8%)
Query 14 DLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANA-----DFICAARIDR 68
D+GCG G L +Y+D + T Y GID+ PEM+ A + N DF + I+
Sbjct 55 DVGCGLGHLAEYIDKKNIDTYYIGIDIMPEMIERAKKKVFKNINPQFMTIDFFKTSDIED 114
Query 69 EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCL 114
+ DY +SGIFN+ L + + E+ ++ L A+R+G FN L
Sbjct 115 DFDYIYSSGIFNLNLGN-NEEF---LKNALKNFLIAARKGVCFNLL 156
>gi|303240519|ref|ZP_07327035.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
gi|302591921|gb|EFL61653.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
Length=216
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (29%), Positives = 75/160 (47%), Gaps = 17/160 (10%)
Query 14 DLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARID------ 67
D+GCG G LL+YL++ G +YTG+D+ +M+ + + +F C
Sbjct 63 DVGCGLGNLLEYLNSNGINVEYTGVDIIEDMIESVK---QKNLIGEFYCMDIFKQHHFES 119
Query 68 READYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDL 127
R D SGIFN+ + + + E+ L S+ +FN L S + D
Sbjct 120 RSFDVIYTSGIFNLNMGN-NMEFLMR---ALGCFINLSKSIIAFNLLDKNSPGKE--DIY 173
Query 128 YYADPCALFDLCKRRYS--KSVALLHDYGLYEFTILVRKA 165
YY DP + + +R+Y K++ ++ Y +FTI+ RK
Sbjct 174 YYYDPEEVAAMMERQYPQIKNIKIVRGYLNNDFTIISRKV 213
>gi|225621156|ref|YP_002722414.1| putative type 12 methyltransferase domain-containing protein
[Brachyspira hyodysenteriae WA1]
gi|225215976|gb|ACN84710.1| putative methyltransferase type 12 domain protein [Brachyspira
hyodysenteriae WA1]
Length=217
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/106 (37%), Positives = 57/106 (54%), Gaps = 9/106 (8%)
Query 14 DLGCGYGALLDYLDARGFKTDYTGIDVSPEMV-RAAALRFEGR----ANADFICAARIDR 68
D+GCG G L +Y+D + T Y GID+ PEM+ RA + F+ DF +
Sbjct 59 DVGCGLGHLAEYIDKQNINTYYIGIDIMPEMIERAKSKNFKNIHPQFMTIDFFKNSDTKD 118
Query 69 EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCL 114
+ DY +SGIFN+ L + + E+ + A D L A+R+G FN L
Sbjct 119 DFDYIYSSGIFNLNLGN-NEEFLKN--AVKDFL-IAARKGVCFNLL 160
>gi|326203898|ref|ZP_08193760.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
gi|325985996|gb|EGD46830.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
Length=206
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/165 (32%), Positives = 80/165 (49%), Gaps = 21/165 (12%)
Query 12 INDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRA-NADFICAARI---- 66
I D+GCG G LL+Y++ + DYTG+D+ P M++ A EG+ FIC
Sbjct 51 ILDVGCGTGNLLEYINQKYTGFDYTGVDILPHMIKIA----EGKKLKGKFICMDLFKNNP 106
Query 67 --DREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMR 124
++ D +SGIFN+ L + + E+ L++ S SFN L D S R
Sbjct 107 FPNKSFDAIFSSGIFNLNLGN-NKEFLLD---ALEVFQDLSCGVISFNLLW---DKSPDR 159
Query 125 DDLY-YADPCALFDLCKRRY--SKSVALLHDYGLYEFTILVRKAS 166
+D Y Y DP + L +Y S +V + Y +FT+ ++K
Sbjct 160 EDKYFYFDPDEVEQLLTEKYGMSWTVIIAKGYLNNDFTVQLKKKQ 204
>gi|302392731|ref|YP_003828551.1| hypothetical protein Acear_1989 [Acetohalobium arabaticum DSM
5501]
gi|302204808|gb|ADL13486.1| hypothetical protein Acear_1989 [Acetohalobium arabaticum DSM
5501]
Length=202
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/129 (28%), Positives = 58/129 (45%), Gaps = 5/129 (3%)
Query 11 SINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARIDREA 70
SI D GCG LL +L R Y G+D+ E ++ +F D + ++
Sbjct 53 SIVDFGCGLADLLPWLQKRSLAEKYIGVDIMEEFLKDNRKKFPEFRFIDTGSFLKKPQKY 112
Query 71 DYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMRDDLYYA 130
+ VASG+F + S I+ + L S GFSFN ++S+ K + + YY
Sbjct 113 GFIVASGVFTL---SWGQNHRKQIKDMIKRLYNKSYHGFSFNMISSF--YPKTKKNYYYF 167
Query 131 DPCALFDLC 139
+P + + C
Sbjct 168 NPLKMGEFC 176
>gi|343387541|gb|AEM23031.1| putative methyltransferase type 12 domain protein [Brachyspira
intermedia PWS/A]
Length=217
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/106 (38%), Positives = 57/106 (54%), Gaps = 9/106 (8%)
Query 14 DLGCGYGALLDYLDARGFKTDYTGIDVSPEMV-RAAALRFEGR----ANADFICAARIDR 68
D+GCG G L +Y+D + T Y GID+ PEM+ RA +F+ DF +
Sbjct 61 DVGCGLGHLAEYIDKQNINTYYIGIDIMPEMIERAKHKKFKNINPQFMTIDFFKNSDTKD 120
Query 69 EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCL 114
+ DY +SGIFN+ L + + E+ + A D L AA R+G FN L
Sbjct 121 DFDYIYSSGIFNLNLGN-NEEFLRN--AVRDFLIAA-RKGVCFNLL 162
>gi|206890797|ref|YP_002249744.1| hypothetical protein THEYE_A1954 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742735|gb|ACI21792.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length=198
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/126 (29%), Positives = 62/126 (50%), Gaps = 9/126 (7%)
Query 1 VRIVNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRF-EGRANAD 59
V ++N SI D GCG G +L RG K DYTGID++P ++ A + E
Sbjct 42 VELINPEGK-SILDFGCGKGDFYGFLKQRGIKCDYTGIDINPSLIEVAIKNYPETVFYVK 100
Query 60 FICAARIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSD 119
I +DR+ +Y++A G+FN+ ++ + ++ L++L + CL
Sbjct 101 DIEREPLDRDFNYTLAIGVFNLAVQDIK----ELMQRCLEILFQHTNEKLILTCLNK--- 153
Query 120 ASKMRD 125
+K++D
Sbjct 154 KTKLKD 159
>gi|114775641|ref|ZP_01451209.1| hypothetical protein SPV1_04913 [Mariprofundus ferrooxydans PV-1]
gi|114553752|gb|EAU56133.1| hypothetical protein SPV1_04913 [Mariprofundus ferrooxydans PV-1]
Length=205
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/160 (29%), Positives = 73/160 (46%), Gaps = 18/160 (11%)
Query 11 SINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARIDRE- 69
S+ D+GCG+ ++ +G +TGID+SP+++R A+ R +A +C D +
Sbjct 52 SVLDVGCGFADFRQWIAGQGKAVSFTGIDLSPDLIRVASQR---HPDAALLCGELADFDF 108
Query 70 ----ADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMR- 124
D+ + SG N +L I D+ R+G +FN L DA ++
Sbjct 109 ASGSFDWVILSGAMNEQLHDEGAYARGMIARMFDL----CRKGVAFNML----DARHLKA 160
Query 125 DDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
DL DP + D C R L DY +FTI +R+
Sbjct 161 HDLQSVDPHLMLDYC-RTICPDAELRDDYLANDFTIYMRR 199
>gi|209809479|ref|YP_002265017.1| hypothetical protein VSAL_II0703 [Aliivibrio salmonicida LFI1238]
gi|208011041|emb|CAQ81457.1| hypothetical protein VSAL_II0703 [Aliivibrio salmonicida LFI1238]
Length=221
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/155 (33%), Positives = 70/155 (46%), Gaps = 13/155 (8%)
Query 14 DLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICAARIDRE---A 70
DLGCGYG L +LD Y G+D ++ A +FE + N +FI ++ A
Sbjct 76 DLGCGYGDLKTFLDMSCCVKSYVGVDQQSSFIKQAKKQFEQQDNCEFIKGDFSSKKLPVA 135
Query 71 DYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTS-YSDASKMRDDLYY 129
D VASG N R ++ H + DM A FN L S Y S++ L
Sbjct 136 DIVVASGSLNYRARN----KTYHAKVIRDMYEKAEEAAI-FNLLDSKYFKKSRL---LEA 187
Query 130 ADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
DP +F+ C S L+ Y +FTI++RK
Sbjct 188 HDPKQVFNYCLSLCPNS-QLITGYADEDFTIVMRK 221
>gi|167620868|ref|ZP_02389499.1| hypothetical protein BthaB_31476 [Burkholderia thailandensis
Bt4]
Length=215
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (27%), Positives = 74/165 (45%), Gaps = 11/165 (6%)
Query 6 AADPFSINDLGCGYGALLDYLDARGFK-TDYTGIDVSPEMVRAAALRFEGRANADFICA- 63
A P ++ D GCG L Y+ G Y G+D S + ++ + +++C
Sbjct 53 GARPATLLDFGCGASHLYQYMLDNGVGGLRYAGLDASQAFCTLSQSKY---PDNEYLCVD 109
Query 64 --ARIDR--EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSD 119
A +R E DY V +G+F + + + + L ++ A + +G +FN ++ D
Sbjct 110 VLAEPERVGEFDYIVMNGVFTEKRELSFDDMFDYFTRVLKIMFAKASKGIAFNVMSKEVD 169
Query 120 ASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
RDDL++ L S+ + HDYGLYE+T V +
Sbjct 170 WE--RDDLFHVPVTQLTHFVAAELSRHYVVRHDYGLYEYTTYVYR 212
>gi|83718558|ref|YP_443707.1| hypothetical protein BTH_I3213 [Burkholderia thailandensis E264]
gi|167582753|ref|ZP_02375627.1| hypothetical protein BthaT_31711 [Burkholderia thailandensis
TXDOH]
gi|83652383|gb|ABC36446.1| conserved hypothetical protein [Burkholderia thailandensis E264]
Length=210
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (27%), Positives = 74/165 (45%), Gaps = 11/165 (6%)
Query 6 AADPFSINDLGCGYGALLDYLDARGFK-TDYTGIDVSPEMVRAAALRFEGRANADFICA- 63
A P ++ D GCG L Y+ G Y G+D S + ++ + +++C
Sbjct 48 GARPATLLDFGCGASHLYQYMLDNGVGGLRYAGLDASQAFCTLSQSKY---PDNEYLCVD 104
Query 64 --ARIDR--EADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSD 119
A +R E DY V +G+F + + + + L ++ A + +G +FN ++ D
Sbjct 105 VLAEPERVGEFDYIVMNGVFTEKRELSFDDMFDYFTRVLKIMFAKASKGIAFNVMSKEVD 164
Query 120 ASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRK 164
RDDL++ L S+ + HDYGLYE+T V +
Sbjct 165 WE--RDDLFHVPVTQLTHFVAAELSRHYVVRHDYGLYEYTTYVYR 207
>gi|114777246|ref|ZP_01452257.1| hypothetical protein SPV1_09273 [Mariprofundus ferrooxydans PV-1]
gi|114552391|gb|EAU54874.1| hypothetical protein SPV1_09273 [Mariprofundus ferrooxydans PV-1]
Length=220
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/167 (28%), Positives = 72/167 (44%), Gaps = 15/167 (8%)
Query 4 VNAADPFSINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAALRFEGRANADFICA 63
V+A D S+ D+GCG+ L +L DYTGID+SPE++ A G + +C
Sbjct 64 VSAGD--SLLDVGCGFADLHSWLRGHDLSVDYTGIDLSPEILATGARMNPG---LNLLCG 118
Query 64 ARID-----READYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYS 118
D R D+ V SG N L + + + R+G +FN L +
Sbjct 119 ELFDFAWPPRSFDWVVLSGTLNWNLHDDG----GYARRVITRMFELCRQGVAFNMLDARK 174
Query 119 DASKMRDDLYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKA 165
+ D+ DP ++ + C + DY +FTI +R+A
Sbjct 175 FSVTQLGDMQAYDPGSILEFCA-TLTPDCRCRSDYLPDDFTIYMRRA 220
>gi|343493309|ref|ZP_08731636.1| putative cyclopropane fatty acid synthase [Vibrio nigripulchritudo
ATCC 27043]
gi|342826307|gb|EGU60741.1| putative cyclopropane fatty acid synthase [Vibrio nigripulchritudo
ATCC 27043]
Length=200
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/163 (30%), Positives = 73/163 (45%), Gaps = 23/163 (14%)
Query 11 SINDLGCGYGALLDYLDARGFKTDYTGIDVSPEMVRAAAL------RFEGRANADFICAA 64
SI DLGCGYG L+ +L + YTGID ++ A L RF A
Sbjct 53 SILDLGCGYGDLVHFLRVKQPIKHYTGIDFHKSFIKQAKLNADDSMRFLHGNFAQMRLPV 112
Query 65 RIDREADYSVASGIFNVRLKSLDTEWCAHIEATLDMLNAASRRGFSFNCLTSYSDASKMR 124
D ++ASG N R + + ++ + +ASR F FN L D+ R
Sbjct 113 H-----DITIASGSLNYRSNNKN-----YLPTVIRAGFSASREAFGFNLL----DSDYFR 158
Query 125 DD--LYYADPCALFDLCKRRYSKSVALLHDYGLYEFTILVRKA 165
+D L DP + +C R + V ++ DY +FTI+++ +
Sbjct 159 EDRLLQAYDPKEVLSIC-RNLTDDVEIIRDYMEEDFTIIMKPS 200
Lambda K H
0.325 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128142534078
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40