BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1507A
Length=167
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840970|ref|NP_336007.1| hypothetical protein MT1555.1 [Myco... 343 4e-93
gi|289442957|ref|ZP_06432701.1| hypothetical protein TBLG_00060 ... 340 3e-92
gi|340626525|ref|YP_004744977.1| hypothetical protein MCAN_15271... 335 1e-90
gi|144899028|emb|CAM75892.1| conserved hypothetical protein [Mag... 39.3 0.20
gi|144899029|emb|CAM75893.1| Hemerythrin [Magnetospirillum gryph... 38.1 0.49
gi|149640945|ref|XP_001514678.1| PREDICTED: thioredoxin-related ... 37.0 0.90
gi|320594178|gb|EFX06581.1| c2h2 finger domain containing protei... 35.8 2.0
>gi|15840970|ref|NP_336007.1| hypothetical protein MT1555.1 [Mycobacterium tuberculosis CDC1551]
gi|57116879|ref|YP_177648.1| hypothetical protein Rv1507A [Mycobacterium tuberculosis H37Rv]
gi|148822729|ref|YP_001287484.1| hypothetical protein TBFG_11539 [Mycobacterium tuberculosis F11]
39 more sequence titles
Length=167
Score = 343 bits (881), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/167 (100%), Positives = 167/167 (100%), Gaps = 0/167 (0%)
Query 1 MQSGQNILAKVCNLIEQSRLSSTRCLQFRITNTSRPRQLRWSEFKRFCDIFNMVLGKARM 60
MQSGQNILAKVCNLIEQSRLSSTRCLQFRITNTSRPRQLRWSEFKRFCDIFNMVLGKARM
Sbjct 1 MQSGQNILAKVCNLIEQSRLSSTRCLQFRITNTSRPRQLRWSEFKRFCDIFNMVLGKARM 60
Query 61 GRDPGRPVRDERRIVSCEIIASDHIGLAAARLLAKRYRGRSVSGFVLMIKSASVHEIDSW 120
GRDPGRPVRDERRIVSCEIIASDHIGLAAARLLAKRYRGRSVSGFVLMIKSASVHEIDSW
Sbjct 61 GRDPGRPVRDERRIVSCEIIASDHIGLAAARLLAKRYRGRSVSGFVLMIKSASVHEIDSW 120
Query 121 SSPSVAMSIGVALCSYPHYAAARTSPPNRDWGEDTTRSRPVTGLLAG 167
SSPSVAMSIGVALCSYPHYAAARTSPPNRDWGEDTTRSRPVTGLLAG
Sbjct 121 SSPSVAMSIGVALCSYPHYAAARTSPPNRDWGEDTTRSRPVTGLLAG 167
>gi|289442957|ref|ZP_06432701.1| hypothetical protein TBLG_00060 [Mycobacterium tuberculosis T46]
gi|289569535|ref|ZP_06449762.1| hypothetical protein TBJG_03725 [Mycobacterium tuberculosis T17]
gi|289750069|ref|ZP_06509447.1| hypothetical protein TBDG_02796 [Mycobacterium tuberculosis T92]
gi|289415876|gb|EFD13116.1| hypothetical protein TBLG_00060 [Mycobacterium tuberculosis T46]
gi|289543289|gb|EFD46937.1| hypothetical protein TBJG_03725 [Mycobacterium tuberculosis T17]
gi|289690656|gb|EFD58085.1| hypothetical protein TBDG_02796 [Mycobacterium tuberculosis T92]
Length=167
Score = 340 bits (873), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 166/167 (99%), Positives = 166/167 (99%), Gaps = 0/167 (0%)
Query 1 MQSGQNILAKVCNLIEQSRLSSTRCLQFRITNTSRPRQLRWSEFKRFCDIFNMVLGKARM 60
MQSGQNILAKVCNLIEQSRLSSTRCLQFRITNTSRPRQLRWSEFKRFCDIFNMVLGKARM
Sbjct 1 MQSGQNILAKVCNLIEQSRLSSTRCLQFRITNTSRPRQLRWSEFKRFCDIFNMVLGKARM 60
Query 61 GRDPGRPVRDERRIVSCEIIASDHIGLAAARLLAKRYRGRSVSGFVLMIKSASVHEIDSW 120
GRDPGRPVRDERRIVSCEIIASDHIGLAAARL AKRYRGRSVSGFVLMIKSASVHEIDSW
Sbjct 61 GRDPGRPVRDERRIVSCEIIASDHIGLAAARLPAKRYRGRSVSGFVLMIKSASVHEIDSW 120
Query 121 SSPSVAMSIGVALCSYPHYAAARTSPPNRDWGEDTTRSRPVTGLLAG 167
SSPSVAMSIGVALCSYPHYAAARTSPPNRDWGEDTTRSRPVTGLLAG
Sbjct 121 SSPSVAMSIGVALCSYPHYAAARTSPPNRDWGEDTTRSRPVTGLLAG 167
>gi|340626525|ref|YP_004744977.1| hypothetical protein MCAN_15271 [Mycobacterium canettii CIPT
140010059]
gi|340004715|emb|CCC43859.1| hypothetical protein MCAN_15271 [Mycobacterium canettii CIPT
140010059]
Length=167
Score = 335 bits (859), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/167 (99%), Positives = 165/167 (99%), Gaps = 0/167 (0%)
Query 1 MQSGQNILAKVCNLIEQSRLSSTRCLQFRITNTSRPRQLRWSEFKRFCDIFNMVLGKARM 60
MQSGQNILAKVCNLIEQSRLSSTRCLQFRITNTSRPRQLR SEFKRFCDIFNMVLGKARM
Sbjct 1 MQSGQNILAKVCNLIEQSRLSSTRCLQFRITNTSRPRQLRRSEFKRFCDIFNMVLGKARM 60
Query 61 GRDPGRPVRDERRIVSCEIIASDHIGLAAARLLAKRYRGRSVSGFVLMIKSASVHEIDSW 120
GRDPGRPVRDERRIVSCEIIASDHIGLAAARLLAKRYRGRSVSG VLMIKSASVHEIDSW
Sbjct 61 GRDPGRPVRDERRIVSCEIIASDHIGLAAARLLAKRYRGRSVSGLVLMIKSASVHEIDSW 120
Query 121 SSPSVAMSIGVALCSYPHYAAARTSPPNRDWGEDTTRSRPVTGLLAG 167
SSPSVA+SIGVALCSYPHYAAARTSPPNRDWGEDTTRSRPVTGLLAG
Sbjct 121 SSPSVAISIGVALCSYPHYAAARTSPPNRDWGEDTTRSRPVTGLLAG 167
>gi|144899028|emb|CAM75892.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
MSR-1]
Length=396
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/57 (34%), Positives = 31/57 (55%), Gaps = 1/57 (1%)
Query 3 SGQNILAKVCNLIE-QSRLSSTRCLQFRITNTSRPRQLRWSEFKRFCDIFNMVLGKA 58
+G AKV NL+ +L R LQ R + P+ L+W+ ++ +FN++L KA
Sbjct 4 AGDGFEAKVANLVAVTQKLDVQRILQVRRLTMADPQSLKWASARQLDLVFNVILAKA 60
>gi|144899029|emb|CAM75893.1| Hemerythrin [Magnetospirillum gryphiswaldense MSR-1]
Length=424
Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/65 (36%), Positives = 35/65 (54%), Gaps = 3/65 (4%)
Query 10 KVCNLIEQSR-LSSTRCLQFRITNTSRPRQLRWSEFKRFCDIFNMVLGKA--RMGRDPGR 66
KV NLI +R L + L R + P L+W+ + +F+++LGKA R+G D R
Sbjct 14 KVSNLINATRHLEVPQILLLRRLTMADPESLKWANIRELDVVFSVILGKAVERLGVDALR 73
Query 67 PVRDE 71
RD+
Sbjct 74 QARDK 78
>gi|149640945|ref|XP_001514678.1| PREDICTED: thioredoxin-related transmembrane protein 4-like [Ornithorhynchus
anatinus]
Length=320
Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/99 (28%), Positives = 43/99 (44%), Gaps = 12/99 (12%)
Query 38 QLRWSEFKRFCDIFNMVLGKARMGRDPGRPVRDERRIVSCEIIASDHIGLAAARLLAKRY 97
+L W F + DI ++ +GK + ++PG R + A D I +RY
Sbjct 52 ELEWETFAKSGDILDISVGKVDVTQEPGLSGRFFVTTLPTIFHAKDGI--------FRRY 103
Query 98 RGRSVS----GFVLMIKSASVHEIDSWSSPSVAMSIGVA 132
RG +S ++L K +V + W SPS G+A
Sbjct 104 RGPGISKDLQNYILEKKWEAVEPVAGWKSPSSITMSGMA 142
>gi|320594178|gb|EFX06581.1| c2h2 finger domain containing protein [Grosmannia clavigera kw1407]
Length=1109
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/35 (46%), Positives = 25/35 (72%), Gaps = 0/35 (0%)
Query 100 RSVSGFVLMIKSASVHEIDSWSSPSVAMSIGVALC 134
SV GF+LM+++A V+E++ +SP VA+SI C
Sbjct 550 ESVDGFMLMLETACVYEVEVGNSPMVALSIVCLRC 584
Lambda K H
0.323 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127548590676
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40