BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1508A
Length=120
Score E
Sequences producing significant alignments: (Bits) Value
gi|57116880|ref|YP_177649.1| hypothetical protein Rv1508A [Mycob... 248 1e-64
gi|15840977|ref|NP_336014.1| GDP-D-mannose dehydratase [Mycobact... 68.2 4e-10
gi|289750076|ref|ZP_06509454.1| LOW QUALITY PROTEIN: GDP-D-manno... 67.8 5e-10
gi|289447121|ref|ZP_06436865.1| GDP-D-mannose dehydratase gmdA [... 67.8 5e-10
gi|340626530|ref|YP_004744982.1| GDP-D-mannose dehydratase gmdA ... 67.8 5e-10
gi|15608649|ref|NP_216027.1| GDP-D-mannose dehydratase gmdA (GDP... 67.8 5e-10
gi|240171768|ref|ZP_04750427.1| GDP-D-mannose dehydratase [Mycob... 66.6 1e-09
gi|326775975|ref|ZP_08235240.1| GDP-mannose 4,6-dehydratase [Str... 65.9 2e-09
gi|26546921|gb|AAN05764.1| GDP-D-mannose-dehydratase MdhtA [Myco... 65.9 2e-09
gi|111022410|ref|YP_705382.1| GDP-mannose 4,6-dehydratase [Rhodo... 65.5 2e-09
gi|3550473|emb|CAA11571.1| gsbA [Mycobacterium avium subsp. silv... 65.5 2e-09
gi|182435335|ref|YP_001823054.1| putative GDP-D-mannose dehydrat... 65.5 2e-09
gi|117927658|ref|YP_872209.1| GDP-mannose 4,6-dehydratase [Acido... 65.5 2e-09
gi|3550478|emb|CAA11575.1| gsbA [Mycobacterium avium subsp. para... 65.5 2e-09
gi|41407329|ref|NP_960165.1| GmdA [Mycobacterium avium subsp. pa... 65.5 3e-09
gi|254775706|ref|ZP_05217222.1| GmdA [Mycobacterium avium subsp.... 65.5 3e-09
gi|226334852|ref|YP_002784524.1| GDP-mannose 4,6-dehydratase [Rh... 65.1 4e-09
gi|152965793|ref|YP_001361577.1| GDP-mannose 4,6-dehydratase [Ki... 65.1 4e-09
gi|345002640|ref|YP_004805494.1| GDP-mannose 4,6-dehydratase [St... 64.7 4e-09
gi|119960832|ref|YP_949780.1| GDP-mannose 4,6-dehydratase [Arthr... 64.3 6e-09
gi|320007946|gb|ADW02796.1| GDP-mannose 4,6-dehydratase [Strepto... 63.9 7e-09
gi|108797919|ref|YP_638116.1| GDP-mannose 4,6-dehydratase [Mycob... 63.9 7e-09
gi|229492398|ref|ZP_04386205.1| GDP-mannose 4,6-dehydratase [Rho... 63.9 8e-09
gi|206890367|ref|YP_002248314.1| GDP-mannose 4,6-dehydratase [Th... 63.5 1e-08
gi|238928051|ref|ZP_04659811.1| GDP-mannose 4,6-dehydratase [Sel... 63.5 1e-08
gi|229492317|ref|ZP_04386124.1| GDP-mannose 4,6-dehydratase [Rho... 63.5 1e-08
gi|226304813|ref|YP_002764771.1| GDP-mannose 4,6-dehydratase [Rh... 63.5 1e-08
gi|145225332|ref|YP_001136010.1| GDP-mannose 4,6-dehydratase [My... 63.5 1e-08
gi|239991460|ref|ZP_04712124.1| putative GDP-D-mannose dehydrata... 63.2 1e-08
gi|284030676|ref|YP_003380607.1| GDP-mannose 4,6-dehydratase [Kr... 63.2 1e-08
gi|296140313|ref|YP_003647556.1| GDP-mannose 4,6-dehydratase [Ts... 63.2 1e-08
gi|320530309|ref|ZP_08031377.1| GDP-mannose 4,6-dehydratase [Sel... 62.8 1e-08
gi|313895297|ref|ZP_07828854.1| GDP-mannose 4,6-dehydratase [Sel... 62.8 2e-08
gi|302537023|ref|ZP_07289365.1| GDP-mannose 4,6-dehydratase [Str... 62.4 2e-08
gi|311746684|ref|ZP_07720469.1| GDP-mannose 4,6-dehydratase [Alg... 62.4 2e-08
gi|15076985|gb|AAK83010.1|AF285969_2 GDP-D-mannose dehydratase G... 62.0 3e-08
gi|194428784|ref|ZP_03061320.1| GDP-mannose 4,6-dehydratase [Esc... 62.0 3e-08
gi|83744452|gb|ABC42542.1| putative mannose dehydratase [Strepto... 62.0 3e-08
gi|332711566|ref|ZP_08431497.1| GDP-mannose 4,6-dehydratase [Lyn... 62.0 3e-08
gi|33239515|ref|NP_874457.1| GDP-D-mannose dehydratase [Prochlor... 62.0 3e-08
gi|224373676|ref|YP_002608048.1| GDP-mannose 4,6-dehydratase [Na... 61.6 3e-08
gi|193069311|ref|ZP_03050267.1| GDP-mannose 4,6-dehydratase [Esc... 61.6 3e-08
gi|323650603|gb|ADX97399.1| GDP-mannose 4,6-dehydratase [Yersini... 61.6 4e-08
gi|166226992|dbj|BAG06237.1| GDP-mannose-4,6-dehydratase [Escher... 61.6 4e-08
gi|88802224|ref|ZP_01117751.1| GDP-D-mannose dehydratase [Polari... 61.6 4e-08
gi|332184329|gb|AEE26583.1| GDP-mannose-4,6-dehydratase [Francis... 61.6 4e-08
gi|302038311|ref|YP_003798633.1| GDP-mannose 4,6-dehydratase [Ca... 61.6 4e-08
gi|334127343|ref|ZP_08501270.1| GDP-mannose 4,6-dehydratase [Cen... 61.6 4e-08
gi|170781973|ref|YP_001710305.1| GDP-mannose 4,6-dehydratase [Cl... 61.6 4e-08
gi|148272781|ref|YP_001222342.1| putative GDP-mannose 4,6-dehydr... 61.6 4e-08
>gi|57116880|ref|YP_177649.1| hypothetical protein Rv1508A [Mycobacterium tuberculosis H37Rv]
gi|148661304|ref|YP_001282827.1| hypothetical protein MRA_1520 [Mycobacterium tuberculosis H37Ra]
gi|148822731|ref|YP_001287486.1| hypothetical protein TBFG_11541 [Mycobacterium tuberculosis F11]
49 more sequence titles
Length=120
Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/120 (99%), Positives = 120/120 (100%), Gaps = 0/120 (0%)
Query 1 VKRALITGITGPDGSYLAKLPLKGYVAAGSPAEVYFCWATRNYRELYGLLAVNSIWFNHE 60
+KRALITGITGPDGSYLAKLPLKGYVAAGSPAEVYFCWATRNYRELYGLLAVNSIWFNHE
Sbjct 1 MKRALITGITGPDGSYLAKLPLKGYVAAGSPAEVYFCWATRNYRELYGLLAVNSIWFNHE 60
Query 61 SPRHGETFMTRNPAPYRGRQRGADRCADADAPAHPDRYQYWGVPASVRGVIDRAMGVCVE 120
SPRHGETFMTRNPAPYRGRQRGADRCADADAPAHPDRYQYWGVPASVRGVIDRAMGVCVE
Sbjct 61 SPRHGETFMTRNPAPYRGRQRGADRCADADAPAHPDRYQYWGVPASVRGVIDRAMGVCVE 120
>gi|15840977|ref|NP_336014.1| GDP-D-mannose dehydratase [Mycobacterium tuberculosis CDC1551]
gi|253799433|ref|YP_003032434.1| GDP-D-mannose dehydratase gmdA [Mycobacterium tuberculosis KZN
1435]
gi|254231741|ref|ZP_04925068.1| GDP-D-mannose dehydratase gmdA [Mycobacterium tuberculosis C]
gi|294996480|ref|ZP_06802171.1| GDP-mannose 4,6-dehydratase [Mycobacterium tuberculosis 210]
gi|297731066|ref|ZP_06960184.1| GDP-mannose 4,6-dehydratase [Mycobacterium tuberculosis KZN R506]
gi|13881184|gb|AAK45828.1| GDP-D-mannose dehydratase [Mycobacterium tuberculosis CDC1551]
gi|124600800|gb|EAY59810.1| GDP-D-mannose dehydratase gmdA [Mycobacterium tuberculosis C]
gi|253320936|gb|ACT25539.1| GDP-D-mannose dehydratase gmdA [Mycobacterium tuberculosis KZN
1435]
Length=348
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/41 (76%), Positives = 33/41 (81%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY WATRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 164 AKVYSYWATRNYREAYGLFAVNGILFNHESPRRGETFVTRK 204
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/30 (77%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
VKRALITGITG DGSYLA+L L KGY G
Sbjct 9 VKRALITGITGQDGSYLAELLLAKGYEVHG 38
>gi|289750076|ref|ZP_06509454.1| LOW QUALITY PROTEIN: GDP-D-mannose dehydratase gmdA [Mycobacterium
tuberculosis T92]
gi|289690663|gb|EFD58092.1| LOW QUALITY PROTEIN: GDP-D-mannose dehydratase gmdA [Mycobacterium
tuberculosis T92]
Length=341
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/41 (76%), Positives = 33/41 (81%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY WATRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWATRNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLAKGYEVHG 30
>gi|289447121|ref|ZP_06436865.1| GDP-D-mannose dehydratase gmdA [Mycobacterium tuberculosis CPHL_A]
gi|289420079|gb|EFD17280.1| GDP-D-mannose dehydratase gmdA [Mycobacterium tuberculosis CPHL_A]
Length=340
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/41 (76%), Positives = 33/41 (81%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY WATRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWATRNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLAKGYEVHG 30
>gi|340626530|ref|YP_004744982.1| GDP-D-mannose dehydratase gmdA [Mycobacterium canettii CIPT 140010059]
gi|340004720|emb|CCC43864.1| GDP-D-mannose dehydratase gmdA (GDP-mannose 4,6 dehydratase)
(GMD) [Mycobacterium canettii CIPT 140010059]
Length=340
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/41 (76%), Positives = 33/41 (81%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY WATRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWATRNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.8 bits (94), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLAKGYEVHG 30
>gi|15608649|ref|NP_216027.1| GDP-D-mannose dehydratase gmdA (GDP-mannose 4,6 dehydratase)
(GMD) [Mycobacterium tuberculosis H37Rv]
gi|148661307|ref|YP_001282830.1| GDP-D-mannose dehydratase [Mycobacterium tuberculosis H37Ra]
gi|148822736|ref|YP_001287490.1| GDP-D-mannose dehydratase gmdA [Mycobacterium tuberculosis F11]
57 more sequence titles
Length=340
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/41 (76%), Positives = 33/41 (81%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY WATRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWATRNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.8 bits (94), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLAKGYEVHG 30
>gi|240171768|ref|ZP_04750427.1| GDP-D-mannose dehydratase [Mycobacterium kansasii ATCC 12478]
Length=344
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/41 (74%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W TRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWVTRNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLSKGYEVHG 30
>gi|326775975|ref|ZP_08235240.1| GDP-mannose 4,6-dehydratase [Streptomyces cf. griseus XylebKG-1]
gi|326656308|gb|EGE41154.1| GDP-mannose 4,6-dehydratase [Streptomyces griseus XylebKG-1]
Length=353
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/43 (70%), Positives = 33/43 (77%), Gaps = 0/43 (0%)
Query 30 SPAEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
S A+VY WAT NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 171 SVAKVYAYWATVNYREAYGMFAVNGILFNHESPRRGETFVTRK 213
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/29 (69%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITG+TG DGSYLA+L L KGY G
Sbjct 19 KTALITGVTGQDGSYLAELLLDKGYTVHG 47
>gi|26546921|gb|AAN05764.1| GDP-D-mannose-dehydratase MdhtA [Mycobacterium avium]
Length=340
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/41 (71%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W TRNYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWVTRNYREAYGMFAVNGILFNHESPRRGETFVTRK 196
Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLSKGYEVHG 30
>gi|111022410|ref|YP_705382.1| GDP-mannose 4,6-dehydratase [Rhodococcus jostii RHA1]
gi|110821940|gb|ABG97224.1| GDP-mannose 4,6-dehydratase [Rhodococcus jostii RHA1]
Length=376
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/41 (71%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W TRNYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 190 AKVYSYWVTRNYREAYGMFAVNGILFNHESPRRGETFVTRK 230
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 35 LKRALITGITGQDGSYLAELLLAKGYEVHG 64
>gi|3550473|emb|CAA11571.1| gsbA [Mycobacterium avium subsp. silvaticum]
Length=343
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/41 (71%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+V+ W TRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVFSYWTTRNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLSKGYEVHG 30
>gi|182435335|ref|YP_001823054.1| putative GDP-D-mannose dehydratase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178463851|dbj|BAG18371.1| putative GDP-D-mannose dehydratase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length=337
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/43 (70%), Positives = 33/43 (77%), Gaps = 0/43 (0%)
Query 30 SPAEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
S A+VY WAT NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 155 SVAKVYAYWATVNYREAYGMFAVNGILFNHESPRRGETFVTRK 197
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/29 (69%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITG+TG DGSYLA+L L KGY G
Sbjct 3 KTALITGVTGQDGSYLAELLLDKGYTVHG 31
>gi|117927658|ref|YP_872209.1| GDP-mannose 4,6-dehydratase [Acidothermus cellulolyticus 11B]
gi|117648121|gb|ABK52223.1| GDP-mannose 4,6-dehydratase [Acidothermus cellulolyticus 11B]
Length=380
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/41 (74%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY WAT NYRE YGL AVN I FNHESPR GETF+TR
Sbjct 200 AKVYAYWATVNYREAYGLFAVNGILFNHESPRRGETFVTRK 240
Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/29 (73%), Positives = 23/29 (80%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
+RALITGITG DGSYLA+L L KGY G
Sbjct 46 RRALITGITGQDGSYLAELLLAKGYEVHG 74
>gi|3550478|emb|CAA11575.1| gsbA [Mycobacterium avium subsp. paratuberculosis]
Length=343
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/41 (71%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+V+ W TRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVFSYWTTRNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLSKGYEVHG 30
>gi|41407329|ref|NP_960165.1| GmdA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395681|gb|AAS03548.1| GmdA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336457965|gb|EGO36953.1| GDP-mannose 4,6-dehydratase [Mycobacterium avium subsp. paratuberculosis
S397]
Length=343
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/41 (71%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+V+ W TRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVFSYWTTRNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLSKGYEVHG 30
>gi|254775706|ref|ZP_05217222.1| GmdA [Mycobacterium avium subsp. avium ATCC 25291]
gi|5524326|gb|AAD44219.1|AF143772_25 mdhtA [Mycobacterium avium]
gi|4416473|gb|AAD20373.1| GDP-D-mannose-dehydratase mdhtA [Mycobacterium avium]
Length=343
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/41 (71%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+V+ W TRNYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVFSYWTTRNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLSKGYEVHG 30
>gi|226334852|ref|YP_002784524.1| GDP-mannose 4,6-dehydratase [Rhodococcus opacus B4]
gi|226246072|dbj|BAH56172.1| GDP-mannose 4,6-dehydratase [Rhodococcus opacus B4]
Length=342
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/41 (71%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W T+NYRE YGL AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWVTKNYREAYGLFAVNGILFNHESPRRGETFVTRK 196
Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLRKGYEVHG 30
>gi|152965793|ref|YP_001361577.1| GDP-mannose 4,6-dehydratase [Kineococcus radiotolerans SRS30216]
gi|151360310|gb|ABS03313.1| GDP-mannose 4,6-dehydratase [Kineococcus radiotolerans SRS30216]
Length=330
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/41 (71%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W TRNYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 157 AKVYGYWMTRNYREAYGMFAVNGILFNHESPRRGETFVTRK 197
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/29 (73%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITGITG DGSYLA+L L KGY G
Sbjct 3 KTALITGITGQDGSYLAELLLEKGYEVHG 31
>gi|345002640|ref|YP_004805494.1| GDP-mannose 4,6-dehydratase [Streptomyces sp. SirexAA-E]
gi|344318266|gb|AEN12954.1| GDP-mannose 4,6-dehydratase [Streptomyces sp. SirexAA-E]
Length=337
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/43 (70%), Positives = 33/43 (77%), Gaps = 0/43 (0%)
Query 30 SPAEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
S A+VY WAT NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 155 SVAKVYAYWATVNYREAYGMYAVNGILFNHESPRRGETFVTRK 197
Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/29 (66%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITG+TG DGSYL++L L KGY G
Sbjct 3 KTALITGVTGQDGSYLSELLLDKGYTVHG 31
>gi|119960832|ref|YP_949780.1| GDP-mannose 4,6-dehydratase [Arthrobacter aurescens TC1]
gi|119947691|gb|ABM06602.1| GDP-mannose 4,6-dehydratase [Arthrobacter aurescens TC1]
Length=345
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/41 (69%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W T+NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 157 AKVYSYWMTKNYREAYGMFAVNGILFNHESPRRGETFVTRK 197
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/29 (73%), Positives = 23/29 (80%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K+ALITGITG DGSYLA+L L KGY G
Sbjct 3 KKALITGITGQDGSYLAELLLSKGYEVHG 31
>gi|320007946|gb|ADW02796.1| GDP-mannose 4,6-dehydratase [Streptomyces flavogriseus ATCC 33331]
Length=337
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/43 (68%), Positives = 32/43 (75%), Gaps = 0/43 (0%)
Query 30 SPAEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
S A+VY WAT NYRE YG+ A N I FNHESPR GETF+TR
Sbjct 155 SVAKVYSYWATVNYREAYGMFATNGILFNHESPRRGETFVTRK 197
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/29 (66%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITG+TG DGSYL++L L KGY G
Sbjct 3 KTALITGVTGQDGSYLSELLLEKGYTVHG 31
>gi|108797919|ref|YP_638116.1| GDP-mannose 4,6-dehydratase [Mycobacterium sp. MCS]
gi|119867015|ref|YP_936967.1| GDP-mannose 4,6-dehydratase [Mycobacterium sp. KMS]
gi|108768338|gb|ABG07060.1| GDP-mannose 4,6-dehydratase [Mycobacterium sp. MCS]
gi|119693104|gb|ABL90177.1| GDP-mannose 4,6-dehydratase [Mycobacterium sp. KMS]
Length=351
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/41 (69%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A++Y W T+NYRE YGL AVN I FNHESPR GETF+TR
Sbjct 157 AKLYSYWITKNYREAYGLFAVNGILFNHESPRRGETFVTRK 197
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 23/30 (77%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
KRALITGITG DGSYLA+L L KGY G
Sbjct 2 TKRALITGITGQDGSYLAELLLHKGYEVHG 31
>gi|229492398|ref|ZP_04386205.1| GDP-mannose 4,6-dehydratase [Rhodococcus erythropolis SK121]
gi|229320807|gb|EEN86621.1| GDP-mannose 4,6-dehydratase [Rhodococcus erythropolis SK121]
Length=343
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/41 (69%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W T+NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWITKNYREAYGIFAVNGILFNHESPRRGETFVTRK 196
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K+ALITGITG DGSYLA+L L KGY G
Sbjct 1 MKKALITGITGQDGSYLAELLLGKGYEVHG 30
>gi|206890367|ref|YP_002248314.1| GDP-mannose 4,6-dehydratase [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742305|gb|ACI21362.1| GDP-mannose 4,6-dehydratase [Thermodesulfovibrio yellowstonii
DSM 11347]
Length=384
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/42 (67%), Positives = 31/42 (74%), Gaps = 0/42 (0%)
Query 30 SPAEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTR 71
+ A+VY W T NYRE YGL A N I FNHESPR GETF+TR
Sbjct 154 AAAKVYAYWVTVNYREAYGLFACNGILFNHESPRRGETFVTR 195
Score = 37.7 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 20/30 (67%), Positives = 23/30 (77%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K+ALITGITG DGSYLA+ L KGY G
Sbjct 1 MKKALITGITGQDGSYLAEFLLSKGYEVHG 30
>gi|238928051|ref|ZP_04659811.1| GDP-mannose 4,6-dehydratase [Selenomonas flueggei ATCC 43531]
gi|238884011|gb|EEQ47649.1| GDP-mannose 4,6-dehydratase [Selenomonas flueggei ATCC 43531]
Length=353
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/41 (66%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A++Y W T+NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 167 AKLYSYWITKNYRESYGMFAVNGILFNHESPRRGETFVTRK 207
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/30 (67%), Positives = 23/30 (77%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K+ALITGITG DGSYL +L L KGY G
Sbjct 11 MKKALITGITGQDGSYLTELLLDKGYEVHG 40
>gi|229492317|ref|ZP_04386124.1| GDP-mannose 4,6-dehydratase [Rhodococcus erythropolis SK121]
gi|229320726|gb|EEN86540.1| GDP-mannose 4,6-dehydratase [Rhodococcus erythropolis SK121]
Length=343
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/41 (69%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W T+NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWITKNYREAYGIFAVNGILFNHESPRRGETFVTRK 196
Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLSKGYEVHG 30
>gi|226304813|ref|YP_002764771.1| GDP-mannose 4,6-dehydratase [Rhodococcus erythropolis PR4]
gi|226183928|dbj|BAH32032.1| GDP-mannose 4,6-dehydratase [Rhodococcus erythropolis PR4]
Length=343
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/41 (69%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W T+NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 156 AKVYSYWITKNYREAYGIFAVNGILFNHESPRRGETFVTRK 196
Score = 40.8 bits (94), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA+L L KGY G
Sbjct 1 MKRALITGITGQDGSYLAELLLSKGYEVHG 30
>gi|145225332|ref|YP_001136010.1| GDP-mannose 4,6-dehydratase [Mycobacterium gilvum PYR-GCK]
gi|145217818|gb|ABP47222.1| GDP-mannose 4,6-dehydratase [Mycobacterium gilvum PYR-GCK]
Length=350
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/41 (66%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A++Y W T+NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 157 AKLYSYWITKNYREAYGMFAVNGILFNHESPRRGETFVTRK 197
Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/30 (77%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
VKRALITGITG DGSYLA+L L KGY G
Sbjct 2 VKRALITGITGQDGSYLAELLLSKGYEVHG 31
>gi|239991460|ref|ZP_04712124.1| putative GDP-D-mannose dehydratase [Streptomyces roseosporus
NRRL 11379]
gi|291448456|ref|ZP_06587846.1| GDP-mannose 4,6-dehydratase [Streptomyces roseosporus NRRL 15998]
gi|291351403|gb|EFE78307.1| GDP-mannose 4,6-dehydratase [Streptomyces roseosporus NRRL 15998]
Length=351
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/43 (68%), Positives = 32/43 (75%), Gaps = 0/43 (0%)
Query 30 SPAEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
S A+VY WAT NYRE Y + AVN I FNHESPR GETF+TR
Sbjct 169 SVAKVYSYWATVNYREAYDMFAVNGILFNHESPRRGETFVTRK 211
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/29 (69%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITG+TG DGSYLA+L L KGY G
Sbjct 17 KTALITGVTGQDGSYLAELLLDKGYTVHG 45
>gi|284030676|ref|YP_003380607.1| GDP-mannose 4,6-dehydratase [Kribbella flavida DSM 17836]
gi|283809969|gb|ADB31808.1| GDP-mannose 4,6-dehydratase [Kribbella flavida DSM 17836]
Length=327
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/41 (71%), Positives = 31/41 (76%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W TRNYRE Y L AVN I FNHESPR GETF+TR
Sbjct 156 AKVYGYWMTRNYREAYDLFAVNGILFNHESPRRGETFVTRK 196
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/30 (64%), Positives = 23/30 (77%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K+A +TGITG DGSYLA+L L KGY G
Sbjct 1 MKKAFVTGITGQDGSYLAELLLAKGYEVHG 30
>gi|296140313|ref|YP_003647556.1| GDP-mannose 4,6-dehydratase [Tsukamurella paurometabola DSM 20162]
gi|296028447|gb|ADG79217.1| GDP-mannose 4,6-dehydratase [Tsukamurella paurometabola DSM 20162]
Length=342
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/41 (69%), Positives = 31/41 (76%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W TRNYRE Y + AVN I FNHESPR GETF+TR
Sbjct 157 AKVYSYWITRNYREAYDMFAVNGILFNHESPRRGETFVTRK 197
Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 22/30 (74%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITGITG DGSYLA+L L KGY G
Sbjct 2 TKTALITGITGQDGSYLAELLLAKGYEVHG 31
>gi|320530309|ref|ZP_08031377.1| GDP-mannose 4,6-dehydratase [Selenomonas artemidis F0399]
gi|320137452|gb|EFW29366.1| GDP-mannose 4,6-dehydratase [Selenomonas artemidis F0399]
Length=354
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/41 (66%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A++Y W T+NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 168 AKLYSYWITKNYRESYGMFAVNGILFNHESPRRGETFVTRK 208
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/29 (69%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K+ALITGITG DGSYL +L L KGY G
Sbjct 13 KKALITGITGQDGSYLTELLLEKGYEIHG 41
>gi|313895297|ref|ZP_07828854.1| GDP-mannose 4,6-dehydratase [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976192|gb|EFR41650.1| GDP-mannose 4,6-dehydratase [Selenomonas sp. oral taxon 137 str.
F0430]
Length=343
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/41 (66%), Positives = 32/41 (79%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A++Y W T+NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 157 AKLYSYWITKNYRESYGMFAVNGILFNHESPRRGETFVTRK 197
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/30 (67%), Positives = 23/30 (77%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K+ALITGITG DGSYL +L L KGY G
Sbjct 1 MKKALITGITGQDGSYLTELLLEKGYEIHG 30
>gi|302537023|ref|ZP_07289365.1| GDP-mannose 4,6-dehydratase [Streptomyces sp. C]
gi|302445918|gb|EFL17734.1| GDP-mannose 4,6-dehydratase [Streptomyces sp. C]
Length=361
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/41 (66%), Positives = 31/41 (76%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+V+ W T NYRE YG+ AVN I FNHESPR GETF+TR
Sbjct 181 AKVFAYWTTVNYREAYGMFAVNGILFNHESPRRGETFVTRK 221
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/29 (69%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITG+TG DGSYLA+L L KGY G
Sbjct 27 KTALITGVTGQDGSYLAELLLSKGYTVHG 55
>gi|311746684|ref|ZP_07720469.1| GDP-mannose 4,6-dehydratase [Algoriphagus sp. PR1]
gi|126578357|gb|EAZ82521.1| GDP-mannose 4,6-dehydratase [Algoriphagus sp. PR1]
Length=390
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/40 (63%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTR 71
A++Y W T+NYRE Y + A N I FNHESPR GETF+TR
Sbjct 164 AKIYAYWITKNYREAYNMFACNGILFNHESPRRGETFVTR 203
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 21/30 (70%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K ALITGITG DGSYLA+L L KGY+ G
Sbjct 1 MKTALITGITGQDGSYLAELLLEKGYMVHG 30
>gi|15076985|gb|AAK83010.1|AF285969_2 GDP-D-mannose dehydratase Gmd [Salmonella enterica]
Length=372
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/58 (54%), Positives = 37/58 (64%), Gaps = 5/58 (8%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRNPAPYRG---RQRGADRC 86
A++Y W T NYRE YG+ A N I FNHESPR GETF+TR RG +G D+C
Sbjct 160 AKLYAYWITVNYRESYGMFACNGILFNHESPRRGETFVTRKIT--RGIANIAQGLDKC 215
Score = 37.7 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 21/29 (73%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITGITG DGSYLA+L L KGY G
Sbjct 3 KVALITGITGQDGSYLAELLLEKGYEVHG 31
>gi|194428784|ref|ZP_03061320.1| GDP-mannose 4,6-dehydratase [Escherichia coli B171]
gi|5678716|gb|AAD46729.1|AF078736_3 GDP-D-mannose dehydratase [Escherichia coli]
gi|194413231|gb|EDX29517.1| GDP-mannose 4,6-dehydratase [Escherichia coli B171]
Length=372
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/58 (54%), Positives = 37/58 (64%), Gaps = 5/58 (8%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRNPAPYRG---RQRGADRC 86
A++Y W T NYRE YG+ A N I FNHESPR GETF+TR RG +G D+C
Sbjct 160 AKLYAYWITVNYRESYGMFACNGILFNHESPRRGETFVTRKIT--RGIANIAQGLDKC 215
Score = 37.7 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 21/29 (73%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITGITG DGSYLA+L L KGY G
Sbjct 3 KVALITGITGQDGSYLAELLLEKGYEVHG 31
>gi|83744452|gb|ABC42542.1| putative mannose dehydratase [Streptomyces hygroscopicus]
Length=352
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/39 (70%), Positives = 30/39 (77%), Gaps = 0/39 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMT 70
A+VY W TRNYRE YG+ VN I FNHESPR GETF+T
Sbjct 156 AKVYSYWMTRNYREAYGMFTVNGILFNHESPRRGETFVT 194
Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/30 (74%), Positives = 23/30 (77%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+KRALITGITG DGSYLA L L KGY G
Sbjct 1 MKRALITGITGQDGSYLADLLLDKGYEVHG 30
>gi|332711566|ref|ZP_08431497.1| GDP-mannose 4,6-dehydratase [Lyngbya majuscula 3L]
gi|332349544|gb|EGJ29153.1| GDP-mannose 4,6-dehydratase [Lyngbya majuscula 3L]
Length=383
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/40 (68%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTR 71
A+VY W T NYRE YG+ A N I FNHESPR GETF+TR
Sbjct 188 AKVYAHWQTINYRESYGMFACNGILFNHESPRRGETFVTR 227
Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 21/29 (73%), Positives = 23/29 (80%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
KRALITGITG DGSYL++L L KGY G
Sbjct 29 KRALITGITGQDGSYLSELLLEKGYEVHG 57
>gi|33239515|ref|NP_874457.1| GDP-D-mannose dehydratase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237040|gb|AAP99109.1| GDP-D-mannose dehydratase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length=375
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/58 (56%), Positives = 36/58 (63%), Gaps = 5/58 (8%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRNPAPYRGRQR---GADRC 86
A++Y W T NYRE YG+ A N I FNHESPR GETF+TR RG R G D C
Sbjct 163 AKLYGYWITVNYREAYGMYACNGILFNHESPRRGETFVTRKIT--RGLARIDAGLDEC 218
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 22/29 (76%), Positives = 23/29 (80%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITGITG DGSYLA+L L KGYV G
Sbjct 6 KTALITGITGQDGSYLAELLLEKGYVVHG 34
>gi|224373676|ref|YP_002608048.1| GDP-mannose 4,6-dehydratase [Nautilia profundicola AmH]
gi|223589707|gb|ACM93443.1| GDP-mannose 4,6-dehydratase [Nautilia profundicola AmH]
Length=392
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTR 71
A++Y W T NYRE Y + AVN I FNHESPR GETF+TR
Sbjct 161 AKMYAYWITVNYREAYNMFAVNGILFNHESPRRGETFVTR 200
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 20/29 (69%), Positives = 21/29 (73%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITGITG DGSYLA+ L KGY G
Sbjct 4 KVALITGITGQDGSYLAEFLLEKGYEVHG 32
>gi|193069311|ref|ZP_03050267.1| GDP-mannose 4,6-dehydratase [Escherichia coli E110019]
gi|260868760|ref|YP_003235162.1| GDP-D-mannose dehydratase [Escherichia coli O111:H- str. 11128]
gi|192957444|gb|EDV87891.1| GDP-mannose 4,6-dehydratase [Escherichia coli E110019]
gi|257765116|dbj|BAI36611.1| GDP-D-mannose dehydratase [Escherichia coli O111:H- str. 11128]
gi|323177059|gb|EFZ62649.1| GDP-mannose 4,6-dehydratase [Escherichia coli 1180]
gi|345338640|gb|EGW71067.1| GDP-mannose 4,6-dehydratase [Escherichia coli 2534-86]
gi|345354815|gb|EGW87032.1| GDP-mannose 4,6-dehydratase [Escherichia coli 3030-1]
Length=372
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTR 71
A++Y W T NYRE YG+ A N I FNHESPR GETF+TR
Sbjct 160 AKLYAYWITVNYRESYGMFACNGILFNHESPRRGETFVTR 199
Score = 37.7 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 21/29 (73%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K ALITGITG DGSYLA+L L KGY G
Sbjct 3 KVALITGITGQDGSYLAELLLEKGYEVHG 31
>gi|323650603|gb|ADX97399.1| GDP-mannose 4,6-dehydratase [Yersinia pseudotuberculosis]
Length=371
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTR 71
A++Y W T NYRE YG+ A N I FNHESPR GETF+TR
Sbjct 159 AKLYAYWITVNYREAYGIYACNGILFNHESPRRGETFVTR 198
Score = 38.1 bits (87), Expect = 0.47, Method: Composition-based stats.
Identities = 19/30 (64%), Positives = 23/30 (77%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K+ALITG+TG DGSYLA+ L KGY G
Sbjct 1 MKKALITGVTGQDGSYLAEFLLEKGYQVHG 30
>gi|166226992|dbj|BAG06237.1| GDP-mannose-4,6-dehydratase [Escherichia hermannii]
Length=382
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTR 71
A++Y W T NYRE YG+ A N I FNHESPR GETF+TR
Sbjct 170 AKMYAYWITVNYREAYGMYACNGILFNHESPRRGETFVTR 209
>gi|88802224|ref|ZP_01117751.1| GDP-D-mannose dehydratase [Polaribacter irgensii 23-P]
gi|88781082|gb|EAR12260.1| GDP-D-mannose dehydratase [Polaribacter irgensii 23-P]
Length=375
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/40 (63%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTR 71
A++Y W T+NYRE Y + A N I FNHESPR GETF+TR
Sbjct 164 AKIYGFWITKNYREAYNMFACNGILFNHESPRRGETFVTR 203
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 21/30 (70%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K ALITGITG DGSYLA+L L KGY+ G
Sbjct 1 MKVALITGITGQDGSYLAELLLGKGYMVHG 30
>gi|332184329|gb|AEE26583.1| GDP-mannose-4,6-dehydratase [Francisella cf. novicida 3523]
Length=372
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTR 71
A++Y W T NYRE YG+ A N I FNHESPR GETF+TR
Sbjct 159 AKLYAYWITVNYREAYGIYACNGILFNHESPRRGETFVTR 198
Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 20/30 (67%), Positives = 23/30 (77%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K+ALITGITG DGSYLA+ L KGY G
Sbjct 1 MKKALITGITGQDGSYLAEFLLEKGYEVHG 30
>gi|302038311|ref|YP_003798633.1| GDP-mannose 4,6-dehydratase [Candidatus Nitrospira defluvii]
gi|300606375|emb|CBK42708.1| GDP-mannose 4,6-dehydratase [Candidatus Nitrospira defluvii]
Length=335
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/41 (69%), Positives = 30/41 (74%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A+VY W T NYRE YGL A N I FNHESPR GETF+TR
Sbjct 156 AKVYAHWITVNYREAYGLFACNGILFNHESPRRGETFVTRK 196
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/27 (71%), Positives = 20/27 (75%), Gaps = 1/27 (3%)
Query 4 ALITGITGPDGSYLAKLPL-KGYVAAG 29
ALITGITG DGSYLA+ L KGY G
Sbjct 3 ALITGITGQDGSYLAEFLLAKGYDVYG 29
>gi|334127343|ref|ZP_08501270.1| GDP-mannose 4,6-dehydratase [Centipeda periodontii DSM 2778]
gi|333389696|gb|EGK60855.1| GDP-mannose 4,6-dehydratase [Centipeda periodontii DSM 2778]
Length=343
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/41 (64%), Positives = 31/41 (76%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A++Y W T+NYRE YG+ A N I FNHESPR GETF+TR
Sbjct 157 AKLYSFWITKNYRESYGMFACNGILFNHESPRRGETFVTRK 197
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/30 (64%), Positives = 22/30 (74%), Gaps = 1/30 (3%)
Query 1 VKRALITGITGPDGSYLAKLPL-KGYVAAG 29
+K+ LITGITG DGSYL +L L KGY G
Sbjct 1 MKKVLITGITGQDGSYLTELLLEKGYEVHG 30
>gi|170781973|ref|YP_001710305.1| GDP-mannose 4,6-dehydratase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156541|emb|CAQ01692.1| GDP-mannose 4,6-dehydratase [Clavibacter michiganensis subsp.
sepedonicus]
Length=350
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/41 (64%), Positives = 31/41 (76%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A++Y W T+NYRE Y + AVN I FNHESPR GETF+TR
Sbjct 157 AKLYSFWITKNYREAYDMFAVNGILFNHESPRRGETFVTRK 197
Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/29 (69%), Positives = 22/29 (76%), Gaps = 1/29 (3%)
Query 2 KRALITGITGPDGSYLAKLPL-KGYVAAG 29
K+A ITGITG DGSYLA+L L KGY G
Sbjct 3 KKAFITGITGQDGSYLAELLLAKGYEVHG 31
>gi|148272781|ref|YP_001222342.1| putative GDP-mannose 4,6-dehydratase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830711|emb|CAN01651.1| putative GDP-mannose 4,6-dehydratase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length=350
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/41 (64%), Positives = 31/41 (76%), Gaps = 0/41 (0%)
Query 32 AEVYFCWATRNYRELYGLLAVNSIWFNHESPRHGETFMTRN 72
A++Y W T+NYRE Y + AVN I FNHESPR GETF+TR
Sbjct 157 AKLYSFWITKNYREAYDMFAVNGILFNHESPRRGETFVTRK 197
Lambda K H
0.322 0.138 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128530997826
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40