BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1534 Length=225 Score E Sequences producing significant alignments: (Bits) Value gi|15608672|ref|NP_216050.1| transcriptional regulator [Mycobact... 439 1e-121 gi|240167916|ref|ZP_04746575.1| putative transcriptional regulat... 322 2e-86 gi|262199730|ref|YP_003270939.1| TetR family transcriptional reg... 78.6 7e-13 gi|154250900|ref|YP_001411724.1| TetR family transcriptional reg... 76.3 3e-12 gi|108761069|ref|YP_630928.1| TetR family transcriptional regula... 75.5 5e-12 gi|220931347|ref|YP_002508255.1| TetR family transcriptional reg... 74.3 1e-11 gi|320095751|ref|ZP_08027398.1| TetR family transcriptional regu... 74.3 1e-11 gi|228994829|ref|ZP_04154627.1| Transcriptional regulator, TetR ... 73.9 2e-11 gi|205372234|ref|ZP_03225049.1| TetR family transcriptional regu... 73.6 2e-11 gi|260892943|ref|YP_003239040.1| transcriptional regulator, TetR... 72.4 4e-11 gi|113868235|ref|YP_726724.1| TetR/AcrR family transcriptional r... 71.6 7e-11 gi|338533897|ref|YP_004667231.1| TetR family transcriptional reg... 71.6 9e-11 gi|89070500|ref|ZP_01157793.1| regulatory protein, TetR [Oceanic... 71.2 9e-11 gi|167629196|ref|YP_001679695.1| transcriptional regulator, tetr... 71.2 1e-10 gi|228991428|ref|ZP_04151383.1| Transcriptional regulator, TetR ... 70.9 1e-10 gi|313902604|ref|ZP_07836004.1| regulatory protein TetR [Thermae... 70.5 2e-10 gi|339326287|ref|YP_004685980.1| TetR/AcrR family transcriptiona... 70.5 2e-10 gi|41409406|ref|NP_962242.1| hypothetical protein MAP3308 [Mycob... 70.1 2e-10 gi|342861165|ref|ZP_08717814.1| TetR family transcriptional regu... 70.1 2e-10 gi|311696042|gb|ADP98915.1| transcriptional regulator, TetR fami... 69.7 3e-10 gi|194289903|ref|YP_002005810.1| TetR family transcriptional reg... 69.7 3e-10 gi|302188049|ref|ZP_07264722.1| TetR family transcriptional regu... 69.3 4e-10 gi|302392441|ref|YP_003828261.1| TetR family transcriptional reg... 69.3 4e-10 gi|296169017|ref|ZP_06850682.1| TetR family transcriptional regu... 69.3 4e-10 gi|228997532|ref|ZP_04157147.1| Transcriptional regulator, TetR ... 69.3 4e-10 gi|118463482|ref|YP_883303.1| TetR family transcriptional regula... 68.9 5e-10 gi|229017860|ref|ZP_04174743.1| Transcriptional regulator, TetR ... 68.9 6e-10 gi|158522186|ref|YP_001530056.1| TetR family transcriptional reg... 68.6 6e-10 gi|332716536|ref|YP_004444002.1| transcriptional regulator, TetR... 68.6 7e-10 gi|114568864|ref|YP_755544.1| TetR family transcriptional regula... 68.6 7e-10 gi|229103132|ref|ZP_04233819.1| Transcriptional regulator, TetR ... 68.2 9e-10 gi|254821580|ref|ZP_05226581.1| TetR-family protein transcriptio... 68.2 1e-09 gi|228908263|ref|ZP_04072108.1| Transcriptional regulator, TetR ... 67.8 1e-09 gi|251796496|ref|YP_003011227.1| TetR family transcriptional reg... 67.8 1e-09 gi|319789657|ref|YP_004151290.1| transcriptional regulator, TetR... 67.4 2e-09 gi|295694802|ref|YP_003588040.1| TetR family transcriptional reg... 67.4 2e-09 gi|27379144|ref|NP_770673.1| transcriptional regulator [Bradyrhi... 67.4 2e-09 gi|331694385|ref|YP_004330624.1| regulatory protein TetR [Pseudo... 67.0 2e-09 gi|258651660|ref|YP_003200816.1| TetR family transcriptional reg... 67.0 2e-09 gi|311744705|ref|ZP_07718502.1| TetR family transcriptional regu... 66.6 2e-09 gi|317130525|ref|YP_004096807.1| TetR family transcriptional reg... 66.6 2e-09 gi|229116034|ref|ZP_04245428.1| Transcriptional regulator, TetR ... 66.6 3e-09 gi|67077957|ref|YP_245577.1| TetR/AcrR family transcriptional re... 66.2 3e-09 gi|332703361|ref|ZP_08423449.1| transcriptional regulator, TetR ... 66.2 3e-09 gi|115379793|ref|ZP_01466864.1| TetR family transcriptional regu... 66.2 3e-09 gi|229097072|ref|ZP_04228039.1| Transcriptional regulator, TetR ... 66.2 4e-09 gi|343928262|ref|ZP_08767716.1| putative TetR family transcripti... 66.2 4e-09 gi|317121320|ref|YP_004101323.1| regulatory protein TetR [Therma... 65.9 4e-09 gi|54025698|ref|YP_119940.1| putative transcriptional regulator ... 65.9 5e-09 gi|54023422|ref|YP_117664.1| putative transcriptional regulator ... 65.5 6e-09 >gi|15608672|ref|NP_216050.1| transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|15841000|ref|NP_336037.1| TetR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31792720|ref|NP_855213.1| transcriptional regulator [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=225 Score = 439 bits (1130), Expect = 1e-121, Method: Compositional matrix adjust. Identities = 224/225 (99%), Positives = 225/225 (100%), Gaps = 0/225 (0%) Query 1 VSRASARRRRAVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYF 60 +SRASARRRRAVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYF Sbjct 1 MSRASARRRRAVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYF 60 Query 61 DSKDDLFHALMAGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVK 120 DSKDDLFHALMAGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVK Sbjct 61 DSKDDLFHALMAGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVK 120 Query 121 LLFRDAYALGGRFEEHLGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQL 180 LLFRDAYALGGRFEEHLGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQL Sbjct 121 LLFRDAYALGGRFEEHLGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQL 180 Query 181 AHRRLNTDDNVTAAQVADFVVSLVLDGLRPRALAVGARGGRAART 225 AHRRLNTDDNVTAAQVADFVVSLVLDGLRPRALAVGARGGRAART Sbjct 181 AHRRLNTDDNVTAAQVADFVVSLVLDGLRPRALAVGARGGRAART 225 >gi|240167916|ref|ZP_04746575.1| putative transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=230 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 165/209 (79%), Positives = 181/209 (87%), Gaps = 1/209 (0%) Query 4 ASARRRRAVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSK 63 ++ RRRRAVSDE+KSQRRD+I+AAAK VFA GFHATT+ADIAKQAGLAYGLIYWYFDSK Sbjct 2 STTRRRRAVSDEEKSQRRDQIMAAAKEVFARNGFHATTIADIAKQAGLAYGLIYWYFDSK 61 Query 64 DDLFHALMAGEEEALRAHVAAELARVGGSTEA-PLRALLQAAVQATFEFFETDKATVKLL 122 D LFH+LMA EE+ALRAH+A L GGS ++ L +A VQATFEFFE DKATVKLL Sbjct 62 DVLFHSLMAAEEDALRAHLADALVAAGGSADSIGGEVLFRAGVQATFEFFEADKATVKLL 121 Query 123 FRDAYALGGRFEEHLGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAH 182 FRDA+ALG RFE+HLGGIYERFIDDIE +VAAQ RGEVV AP RM AYTLAALVGQLAH Sbjct 122 FRDAHALGDRFEKHLGGIYERFIDDIETFIVAAQERGEVVAAPPRMVAYTLAALVGQLAH 181 Query 183 RRLNTDDNVTAAQVADFVVSLVLDGLRPR 211 RRL+TDD VTAAQVADFVVSLVLDGLRPR Sbjct 182 RRLSTDDGVTAAQVADFVVSLVLDGLRPR 210 >gi|262199730|ref|YP_003270939.1| TetR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262083077|gb|ACY19046.1| transcriptional regulator, TetR family [Haliangium ochraceum DSM 14365] Length=242 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 66/205 (33%), Positives = 104/205 (51%), Gaps = 9/205 (4%) Query 13 SDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMA 72 S E +R+ IL AA+ VFA GF + V++IA+ AG+A G IY YF SKDDL ++ Sbjct 22 SGERGGDKRERILDAAERVFARAGFFQSRVSEIARDAGVADGTIYLYFKSKDDLLISVFE 81 Query 73 GEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFE-TDKATVKLLFRDAYALGG 131 E + H+A L + + L ALL++ + +F E + T++L + Sbjct 82 SRMERINDHLARALEGLATPPDK-LNALLRSYLGLVNDFPELAEVLTIELRQSSKF---- 136 Query 132 RFEEHLGGIYERFIDDIEAVVVAAQRRGEVVEA-PSRMAAYTLAALVGQLAH-RRLNTDD 189 +E+ + F+ + +VV Q RG+ A P A + ++ +LA L + Sbjct 137 -MKEYANPRFGDFLKLVASVVAEGQERGDFAAAIPPAHVARMVFGILDELALVWLLGRGE 195 Query 190 NVTAAQVADFVVSLVLDGLRPRALA 214 + A AD+V LV+DGL+PRA A Sbjct 196 SFDIATAADWVCLLVMDGLKPRAQA 220 >gi|154250900|ref|YP_001411724.1| TetR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154850|gb|ABS62067.1| transcriptional regulator, TetR family [Parvibaculum lavamentivorans DS-1] Length=220 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/198 (32%), Positives = 99/198 (50%), Gaps = 19/198 (9%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEE 76 K R+ IL AAK+VF+ G+ AT+V DI ++ GLA G Y YF SK+++F ALM Sbjct 26 KQNNREAILEAAKVVFSDLGYGATSVRDIIRKTGLASGTFYNYFKSKEEVFEALMDEGMR 85 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFE-- 134 +R + AE R+ T ++ A + F++ TD+ T +++ R+ + R + Sbjct 86 RIRPRLRAE--RIRSRT---FEDFIRNAFRTYFDYLATDRDTFQVMRRNPNTVRVRMDSP 140 Query 135 EHLGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVG---QLAHRRLNTDDNV 191 E + G E I + R G + P+ A Y +AA+VG ++ R L + + Sbjct 141 EIIAGFEE-----IREYIEEDIRNGTL---PAVDAEYLMAAVVGLAMEMGDRMLRRPE-M 191 Query 192 TAAQVADFVVSLVLDGLR 209 A + F +LVL G R Sbjct 192 DAEHASAFATALVLGGFR 209 >gi|108761069|ref|YP_630928.1| TetR family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108464949|gb|ABF90134.1| transcriptional regulator, TetR family [Myxococcus xanthus DK 1622] Length=233 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/156 (37%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query 11 AVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHAL 70 A S +S+RR IL AA VFA KG+H +AD+AK+AG+AYGL+Y YF +KD+L + Sbjct 9 AESGTRESERRRTILRAAIDVFARKGYHGCRIADVAKEAGVAYGLVYHYFKNKDELLETV 68 Query 71 MAGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDA--YA 128 + V A V G E PL ++ V+ FE + D VK+L + Sbjct 69 F---DTGWSGFVTRVRAVVEG--EGPLAEKVRGIVEVAFEAYRVDPRAVKVLILEIARSP 123 Query 129 LGGRFEEHLGGIYERFIDDI---EAVVVAAQRRGEV 161 G R F+D I A+ AAQ RGE+ Sbjct 124 AGSRINRQTA-----FVDAIRLSSALFNAAQERGEL 154 >gi|220931347|ref|YP_002508255.1| TetR family transcriptional regulator [Halothermothrix orenii H 168] gi|219992657|gb|ACL69260.1| transcriptional regulator, TetR family [Halothermothrix orenii H 168] Length=194 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/189 (27%), Positives = 93/189 (50%), Gaps = 9/189 (4%) Query 21 RDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALRA 80 RDEIL AA+ +FA +GFH +++ IAK+AG+ G +YWYFDSK +LF L+ + + Sbjct 10 RDEILKAARNLFAERGFHEASMSSIAKEAGVGKGTLYWYFDSKQELFKELIKTGGKIIED 69 Query 81 HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLGGI 140 + + E ++ ++ + +K ++ LF + LG F+ L Sbjct 70 KIHKWVKE-----ETSPEEFIKMFIETGLKHLSNNKRIIRALF-SSDELGREFKRELFET 123 Query 141 YERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRL-NTDDNVTAAQVADF 199 R I+ +E V+ G+ E +R AA + ++ + L +T+D++ ++ F Sbjct 124 RYRIINSLEMVIQQGINEGKFREVSTRHAAAAIIGIINGMTPALLCDTEDDI--EELLGF 181 Query 200 VVSLVLDGL 208 ++ GL Sbjct 182 SFDFIMKGL 190 >gi|320095751|ref|ZP_08027398.1| TetR family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977307|gb|EFW09003.1| TetR family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length=207 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/196 (30%), Positives = 104/196 (54%), Gaps = 15/196 (7%) Query 20 RRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALR 79 RR++++A + +FA KGF AT+V +IA +A ++ ++Y +F K+ L+ ++ E ++L Sbjct 13 RREQLVAVGRSLFAEKGFDATSVEEIAARAKVSKPVVYEHFGGKEGLYAVVVDREVQSLI 72 Query 80 AHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYA--LGGRFEEHL 137 A + + L S++ P R +L+ A A ++ E++ ++L RDA G F + Sbjct 73 ASLHSSLE----SSDRP-RLILENATLALLDYIESNTDGFRVLVRDAPTDRTAGSFSSVM 127 Query 138 GGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQVA 197 G + R +E V+ A R + + S + A L L+ Q+ L+ D + +VA Sbjct 128 GDVASR----VEHVIAAQFERSDFPTSWSPLYAQMLVGLIAQVGQWWLD-DRRMKKDEVA 182 Query 198 DFVVSLVLDG---LRP 210 VV+LV +G LRP Sbjct 183 AHVVNLVWNGQRNLRP 198 >gi|228994829|ref|ZP_04154627.1| Transcriptional regulator, TetR [Bacillus pseudomycoides DSM 12442] gi|228998527|ref|ZP_04158115.1| Transcriptional regulator, TetR [Bacillus mycoides Rock3-17] gi|229006003|ref|ZP_04163693.1| Transcriptional regulator, TetR [Bacillus mycoides Rock1-4] gi|228755271|gb|EEM04626.1| Transcriptional regulator, TetR [Bacillus mycoides Rock1-4] gi|228761252|gb|EEM10210.1| Transcriptional regulator, TetR [Bacillus mycoides Rock3-17] gi|228764937|gb|EEM13693.1| Transcriptional regulator, TetR [Bacillus pseudomycoides DSM 12442] Length=202 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/196 (30%), Positives = 91/196 (47%), Gaps = 13/196 (6%) Query 10 RAVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHA 69 R +DE K ++R IL AA +++ GF T VA+IAK+AG+++G ++ YFDSK+ L+ + Sbjct 4 RLTNDEKKKRKRSTILNAAIKLYSENGFAETKVAEIAKEAGVSFGTVFTYFDSKEALYES 63 Query 70 LMAGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYAL 129 + E ++ + G ++ ++ VQ F ++L+ + A Sbjct 64 AILEPLEEIKPYFIEIEEHFKGEPLEVVKEMIDCHVQ----LFSMKSEYLRLI-QQVLAR 118 Query 130 GGRFE---EHLGGIYERFIDDIEAVVVAAQRRGEVV-EAPSRMAAYTLAALVGQLAHRRL 185 RF + L FID I V+ A QR G E+PS +A L+ L G RL Sbjct 119 PDRFPKLFKELNDFVNVFIDCIHPVIEAGQRLGYFYEESPSLVAESYLSILNGM----RL 174 Query 186 NTDDNVTAAQVADFVV 201 D T D + Sbjct 175 TFIDEYTNLMWKDITI 190 >gi|205372234|ref|ZP_03225049.1| TetR family transcriptional regulator [Bacillus coahuilensis m4-4] Length=217 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/201 (28%), Positives = 106/201 (53%), Gaps = 9/201 (4%) Query 15 EDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGE 74 E +Q++ IL AA +F+ KGF AT+ ++IAK+AG+A G I+ ++ +K DL A++A Sbjct 16 ESLTQKQRNILEAAVEIFSEKGFAATSTSEIAKKAGVAEGTIFRHYRTKQDLLLAIVAPT 75 Query 75 EEALR-AHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDA---YALG 130 L V ++ + + +L++A + EF ++ K+L + L Sbjct 76 MAKLIGPFVLKDVFNIMDNPNHSYESLVRAILVNRLEFLRKNRILAKILILEMPYQEELK 135 Query 131 GRFEEHLGGIYERFIDDIEAVVVAAQRRGEVVEAPSR-MAAYTLAALVGQLA-HRRLNTD 188 +F EH I E+ +E + ++ GE+VE PS+ + +TL+ ++G + H L D Sbjct 136 RQFMEH---IIEKARVRLEKAIGHYKQEGEIVEMPSQSLMRFTLSTVIGHVVFHEFLFRD 192 Query 189 DNVTAAQVADFVVSLVLDGLR 209 ++ + D +SL++ G++ Sbjct 193 PSLNEEEEVDRTMSLLMYGVK 213 >gi|260892943|ref|YP_003239040.1| transcriptional regulator, TetR family [Ammonifex degensii KC4] gi|260865084|gb|ACX52190.1| transcriptional regulator, TetR family [Ammonifex degensii KC4] Length=196 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/145 (34%), Positives = 77/145 (54%), Gaps = 5/145 (3%) Query 15 EDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGE 74 E S +R I AA VF+ KGF T+ +IAK+AG+A G +Y+ + SK +LF +L+ Sbjct 2 ERTSTKRLPIFEAAVAVFSEKGFAKATMEEIAKRAGIAKGTLYYNYRSKKELFLSLIEEG 61 Query 75 EEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFE 134 E L A V E+AR ++ L+A + A FFE + KLL + + LG R+E Sbjct 62 IERLEATVKREIARRKDTS-----GKLEALIGAQLSFFEEYRDYCKLLLSEVWGLGTRWE 116 Query 135 EHLGGIYERFIDDIEAVVVAAQRRG 159 + + + +I I+ ++ Q G Sbjct 117 KQIERLRSGYIGIIKDLLQRGQAEG 141 >gi|113868235|ref|YP_726724.1| TetR/AcrR family transcriptional regulator [Ralstonia eutropha H16] gi|113527011|emb|CAJ93356.1| transcriptional regulator, TetR/AcrR-family [Ralstonia eutropha H16] Length=217 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/191 (27%), Positives = 93/191 (49%), Gaps = 9/191 (4%) Query 21 RDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALRA 80 R+ +L AA+ VF KG++A ++++I ++A +A G Y YF K+D+F AL+A E +RA Sbjct 36 REALLRAAEKVFGEKGYYAASISEITQEAKVAMGTFYLYFKDKEDIFRALVAHMLELVRA 95 Query 81 HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLGGI 140 H+ +A EA + ++A F K +++ D+Y++ E Sbjct 96 HLRKHVAAAATQMEAE-----RLGLKAFLSFVSRHKNLYRIVL-DSYSVD---ETIYSSY 146 Query 141 YERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQVADFV 200 ++ F + + A+ +GE+V + + A+ L + L R + +V D Sbjct 147 FQVFAELYSRRLTRAEEQGEIVPGDAEVRAWCLIGISNFLGMRYARWKRPPSMEKVVDTA 206 Query 201 VSLVLDGLRPR 211 L+ GL+PR Sbjct 207 FDLISHGLQPR 217 >gi|338533897|ref|YP_004667231.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1] gi|337259993|gb|AEI66153.1| TetR family transcriptional regulator [Myxococcus fulvus HW-1] Length=233 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/150 (35%), Positives = 72/150 (48%), Gaps = 15/150 (10%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEE 76 +S+RR IL AA VFA KG+H +AD+AK+AG+AYGL+Y YF +KD+L + Sbjct 15 ESERRRTILRAAIDVFARKGYHGCRIADVAKEAGVAYGLVYHYFKNKDELLETVFDTGWS 74 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDA--YALGGRFE 134 V R E L + V+ FE + D VK+L + G R Sbjct 75 GFVTRV-----RTVVEGEGSLAEKVHGIVEVAFEAYRVDPRAVKVLILEIARSPAGSRIN 129 Query 135 EHLGGIYERFIDDI---EAVVVAAQRRGEV 161 + F+D I A+ AAQ RGE+ Sbjct 130 RQMA-----FVDAIRLSSALFHAAQERGEL 154 >gi|89070500|ref|ZP_01157793.1| regulatory protein, TetR [Oceanicola granulosus HTCC2516] gi|89043904|gb|EAR50095.1| regulatory protein, TetR [Oceanicola granulosus HTCC2516] Length=198 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/191 (30%), Positives = 86/191 (46%), Gaps = 9/191 (4%) Query 20 RRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALR 79 RR +IL AA+ V GF A T+ADI + A A G Y YF SK+++FH L+ R Sbjct 15 RRAKILRAAEEVIGQSGFSAATIADITRAAETALGTFYIYFTSKEEVFHELVLEMGRTTR 74 Query 80 AHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLGG 139 A V +A EA +A ++A F E A +++ + + ++ Sbjct 75 ASVTQAVAGAADRLEAE-----RAGLRAFLSFVEERPALYRIVEEARFVDPDAYRDYFSS 129 Query 140 IYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQVADF 199 E + D + A A GE+ E + + A+ L + L R + DD +V D Sbjct 130 FAEAYADQLRAAAGA----GEISEGDAEVRAWALMGVAKTLGERFVLWDDTPDLERVVDS 185 Query 200 VVSLVLDGLRP 210 +L+ DGL P Sbjct 186 AFALIRDGLAP 196 >gi|167629196|ref|YP_001679695.1| transcriptional regulator, tetr family, putative [Heliobacterium modesticaldum Ice1] gi|167591936|gb|ABZ83684.1| transcriptional regulator, tetr family, putative [Heliobacterium modesticaldum Ice1] Length=195 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/188 (26%), Positives = 90/188 (48%), Gaps = 6/188 (3%) Query 22 DEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALRAH 81 ++I A +FA KGF T+ ++A+++G+A G +Y++FD K+DL LM E L + Sbjct 5 EQIFQGAVDIFAEKGFDRATMDEVAERSGVAKGTLYYHFDGKEDLIAFLMEEGLERLSKY 64 Query 82 VAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLGGIY 141 V +A E L+ A+ FF+ ++ ++L + R + I Sbjct 65 VHEAVAGCDDPAEQ-----LRRAIYGLVRFFDQNRDFCQMLLMGVWFNRER-QVQFRQIL 118 Query 142 ERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQVADFVV 201 F + A++ A RG++ P+ ++A L L+ ++ R + D + Q+ +F+ Sbjct 119 RNFYSQLAAIIQAGMERGQLRPMPAELSATGLFGLISVISLRVILDGDAMDCEQLGNFIF 178 Query 202 SLVLDGLR 209 L+G R Sbjct 179 QQYLNGAR 186 >gi|228991428|ref|ZP_04151383.1| Transcriptional regulator, TetR [Bacillus pseudomycoides DSM 12442] gi|228768358|gb|EEM16966.1| Transcriptional regulator, TetR [Bacillus pseudomycoides DSM 12442] Length=219 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/213 (28%), Positives = 104/213 (49%), Gaps = 15/213 (7%) Query 11 AVSDEDK-SQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHA 69 A +D DK ++R+ IL AA +F KG+ +T+ ++IAK+AG+A G I+ Y+ +K DL A Sbjct 11 AATDTDKRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLLA 70 Query 70 LMAGEEEALRA--HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAY 127 ++ A V A + +T L+ A++ FEF + +K+L ++ Sbjct 71 VVMPTLTKFAAPFFVQAFAKEILENTYETYEEFLRKAIRNRFEFAKKHFPMLKILIQEV- 129 Query 128 ALGGRFEEHLGGIYER-FIDDIEAVVVAAQRRGEVVEAP-SRMAAYTLAALVGQLAHRRL 185 + + + E+ E ++V Q +G+++E P + +TL+A++G + R L Sbjct 130 PFQPELKNEIQQLVEKELFSRFEKLIVHFQEQGQIIEMPIPSVIRFTLSAIMGLILTRFL 189 Query 186 -----NTDDNVTAAQVADFVVSLVLDGLRPRAL 213 DD V F +L GL P+ L Sbjct 190 LLPEEKWDDEVEIENTIQF----ILYGLTPQTL 218 >gi|313902604|ref|ZP_07836004.1| regulatory protein TetR [Thermaerobacter subterraneus DSM 13965] gi|313467170|gb|EFR62684.1| regulatory protein TetR [Thermaerobacter subterraneus DSM 13965] Length=203 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/212 (34%), Positives = 102/212 (49%), Gaps = 19/212 (8%) Query 18 SQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEA 77 + R EIL AA+ +F KG++ATT+ DIA+ GL +Y Y SK+ L +AGE Sbjct 2 ASREQEILDAARKLFRQKGYYATTMQDIAEAVGLQKASLYHYIRSKEALL-LQIAGETMR 60 Query 78 LRAHVAAELARV---GGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFE 134 L AEL R+ GGS L A ++A V+ E E T+ +LFR+++AL Sbjct 61 L---FHAELDRIEAAGGSVAQQLAAAIRAHVKVVAEHQE----TLTVLFRESHALPPEHA 113 Query 135 EHLGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAAL-VGQLAHRRLNTDDNVTA 193 E + G R+ + ++ E+ P A LA L +R + D +T Sbjct 114 EKVRGETGRYTRRLTELIARGVAASEL--RPVDPGAACLAILGACNWMYRWYSADGRLTP 171 Query 194 AQVADFVVSLVLDGLRPRALAVGARGGRAART 225 Q+ D V ++L GL LA G GR ART Sbjct 172 QQIGDQFVEVILHGL----LAPGG-AGRQART 198 >gi|339326287|ref|YP_004685980.1| TetR/AcrR family transcriptional regulator [Cupriavidus necator N-1] gi|338166444|gb|AEI77499.1| transcriptional regulator TetR/AcrR family [Cupriavidus necator N-1] Length=217 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/191 (27%), Positives = 92/191 (49%), Gaps = 9/191 (4%) Query 21 RDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALRA 80 R+ +L AA+ VF KG++A ++++I ++A +A G Y YF K+D+F AL+A E +R Sbjct 36 REALLRAAEKVFGEKGYYAASISEITQEAKVAMGTFYLYFKDKEDIFRALVAHMLELVRT 95 Query 81 HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLGGI 140 H+ +A EA + ++A F K +++ D+Y++ E Sbjct 96 HLRKHVAAAATQMEAE-----RLGLKAFLSFVSRHKNLYRIVL-DSYSVD---ETIYSSY 146 Query 141 YERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQVADFV 200 ++ F + + A+ +GE+V + + A+ L + L R + +V D Sbjct 147 FQVFAELYSRRLTRAEEQGEIVPGDAEVRAWCLIGISNFLGMRYARWKRPPSMEKVVDTA 206 Query 201 VSLVLDGLRPR 211 L+ GL+PR Sbjct 207 FDLISHGLQPR 217 >gi|41409406|ref|NP_962242.1| hypothetical protein MAP3308 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398237|gb|AAS05858.1| hypothetical protein MAP_3308 [Mycobacterium avium subsp. paratuberculosis K-10] Length=228 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/192 (30%), Positives = 94/192 (49%), Gaps = 8/192 (4%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEE 76 + +RR ++L A VF +G+HA + +IA +AG++ ++Y +F SK +L+ A++A E Sbjct 37 RDERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHFTSKLELYLAVLARHVE 96 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEH 136 L + V L ST R L AAVQA F+F E D +L+F + Y Sbjct 97 NLVSGVQQAL-----STTKDNRRRLHAAVQAFFDFIEHDSQGYRLIFENDYVTEPEVAAQ 151 Query 137 LGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQV 196 L E ID + A++ ++ G + +RM A L + A L++D ++ A Sbjct 152 LRVATESCIDAVYALI--SEDSG-LDPHRARMIAVGLVGISVDCARYWLDSDRPISKADA 208 Query 197 ADFVVSLVLDGL 208 + V+ GL Sbjct 209 VEGTVAFAWGGL 220 >gi|342861165|ref|ZP_08717814.1| TetR family transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342131609|gb|EGT84879.1| TetR family transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=228 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/192 (30%), Positives = 93/192 (49%), Gaps = 8/192 (4%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEE 76 + +RR ++L A VF +G+HA + +IA +AG++ ++Y +F SK +L+ A++A E Sbjct 37 RDERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHFSSKLELYLAVLARHVE 96 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEH 136 L + V L ST R L +AVQA F+F E D +L+F + Y Sbjct 97 NLVSGVQNAL-----STTTDNRRRLHSAVQAFFDFIEHDSQGYRLIFENDYVTEPEVAAQ 151 Query 137 LGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQV 196 + E ID + A++ ++ G + +RM A L + A L++D ++ A Sbjct 152 VRVATESCIDAVFALI--SEDSG-LDPHRARMIAVGLVGISVDCARYWLDSDRPISKADA 208 Query 197 ADFVVSLVLDGL 208 D V GL Sbjct 209 VDGTVQFAWGGL 220 >gi|311696042|gb|ADP98915.1| transcriptional regulator, TetR family [Marinobacter adhaerens HP15] Length=203 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/88 (40%), Positives = 54/88 (62%), Gaps = 4/88 (4%) Query 13 SDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMA 72 + ED + R +L AA +F+ G+ TT++ IAK+AG + G IYW+F++KDDL+ A++A Sbjct 4 TKEDAEKTRQTVLEAALKLFSRDGYSLTTLSRIAKEAGCSRGPIYWHFENKDDLYEAVLA 63 Query 73 GEEEALRAHVAAELARVGGSTEAPLRAL 100 +E L A V A G E P+ A+ Sbjct 64 YSQEPLEALV----AECSGMRETPIEAM 87 >gi|194289903|ref|YP_002005810.1| TetR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223738|emb|CAQ69745.1| putative transcriptional regulator, TetR family [Cupriavidus taiwanensis LMG 19424] Length=219 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/191 (27%), Positives = 92/191 (49%), Gaps = 9/191 (4%) Query 21 RDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALRA 80 R+ +L AA+ VF KG++A ++++I ++A +A G Y YF K+D+F AL+ E +RA Sbjct 35 REALLRAAEKVFGEKGYYAASISEITQEAKVAMGTFYLYFKDKEDIFRALVGHMLELVRA 94 Query 81 HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLGGI 140 H+ +A EA + ++A F K +++ D+Y++ E Sbjct 95 HLRKHVAAAETQMEAE-----RLGLKAFLSFVSRHKNLYRIVL-DSYSVD---ETIYSSY 145 Query 141 YERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQVADFV 200 ++ F + + A+ +GE+V + + A+ L + L R + +V D Sbjct 146 FQVFAELYSRRLTRAEEQGEIVPGDAEVRAWCLIGISNFLGMRYARWKRPPSMEKVVDTA 205 Query 201 VSLVLDGLRPR 211 L+ GL+PR Sbjct 206 FDLIAHGLQPR 216 >gi|302188049|ref|ZP_07264722.1| TetR family transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length=201 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/187 (27%), Positives = 82/187 (44%), Gaps = 6/187 (3%) Query 21 RDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALRA 80 +DEIL+ A I+FA KGF A T+ DIA G ++Y+YF +K+++ + E+ + Sbjct 18 QDEILSTAAILFADKGFRAITINDIAAGLGYTKSVVYYYFKNKNEILWQIFNRMYESYQQ 77 Query 81 HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLGGI 140 + + + TE L Q A+Q K + FRD L + + Sbjct 78 SIDEVIGKSQSPTETLREILYQHALQVM-----KRKHWTAIYFRDESELEPEQQNLMRKR 132 Query 141 YERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQVADFV 200 + IE V + G V+ PS +A + +H N + + TA Q+A + Sbjct 133 KREYDASIEKVYQEGVKEGVFVDIPSHIAVSGFLGMCN-WSHTWFNDNGSHTAEQIAGYY 191 Query 201 VSLVLDG 207 S++ G Sbjct 192 CSIMSKG 198 >gi|302392441|ref|YP_003828261.1| TetR family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302204518|gb|ADL13196.1| transcriptional regulator, TetR family [Acetohalobium arabaticum DSM 5501] Length=189 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/192 (24%), Positives = 96/192 (50%), Gaps = 7/192 (3%) Query 18 SQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMA-GEEE 76 + ++++I AA F+ KG TT+ +IA+ AG+ G +Y YF +K+DL +L+ G +E Sbjct 2 NSKQEKIFTAAIEKFSQKGSTNTTMQEIAETAGVGKGTLYRYFKNKEDLIFSLIKYGIDE 61 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEH 136 +A+++ + + P++ L+ ++ EF+ + K L R+ + +FEEH Sbjct 62 -----MASKVKEAVENVQDPVKK-LEIVIEVQLEFYNQYRGFCKFLTREIWGPQSKFEEH 115 Query 137 LGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQV 196 + I IE ++ G++ + + A +L+ ++ A ++ ++ Sbjct 116 IKEIRTNNTVIIEDIISQGIEEGKLKGINAELGAVSLSGMINITALHWFMFHESFPVEKI 175 Query 197 ADFVVSLVLDGL 208 + ++SL DG+ Sbjct 176 KENLISLYFDGI 187 >gi|296169017|ref|ZP_06850682.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896314|gb|EFG75971.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=228 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/192 (30%), Positives = 94/192 (49%), Gaps = 8/192 (4%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEE 76 + +RR ++L A VF +G+HA + +IA++AG++ ++Y +F SK +L+ A++A E Sbjct 37 RDERRGQLLIVASDVFVDRGYHAAGMDEIAERAGVSKPVLYQHFSSKLELYLAVLARHVE 96 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEH 136 L + V L ST R L AAVQA F+F E D +L+F + Y Sbjct 97 NLVSGVQQAL-----STTTDNRRRLHAAVQAFFDFIEHDSQGYRLIFENDYVTEPEVAAQ 151 Query 137 LGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQV 196 + E ID + A++ ++ G + +RM A L + A L++D ++ A Sbjct 152 VRVATESCIDAVFALI--SEDSG-LDPHRARMIAVGLVGISVDCARYWLDSDRPISKADA 208 Query 197 ADFVVSLVLDGL 208 + V GL Sbjct 209 VEGTVQFAWGGL 220 >gi|228997532|ref|ZP_04157147.1| Transcriptional regulator, TetR [Bacillus mycoides Rock3-17] gi|229005157|ref|ZP_04162880.1| Transcriptional regulator, TetR [Bacillus mycoides Rock1-4] gi|228756132|gb|EEM05454.1| Transcriptional regulator, TetR [Bacillus mycoides Rock1-4] gi|228762224|gb|EEM11155.1| Transcriptional regulator, TetR [Bacillus mycoides Rock3-17] Length=219 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/213 (28%), Positives = 104/213 (49%), Gaps = 15/213 (7%) Query 11 AVSDEDK-SQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHA 69 A +D DK ++R+ IL AA +F KG+ +T+ ++IAK+AG+A G I+ Y+ +K DL A Sbjct 11 AATDTDKRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLLA 70 Query 70 LMAGEEEALRA--HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAY 127 ++ A V A + +T L+ A++ FEF + +K+L ++ Sbjct 71 VVMPTLTKFAAPFFVQAFAKEILENTYETYEEFLRKAIRNRFEFAKKHFPMLKILIQEV- 129 Query 128 ALGGRFEEHLGGIYER-FIDDIEAVVVAAQRRGEVVEAP-SRMAAYTLAALVGQLAHRRL 185 + + + E+ + ++V Q +G+++E P + +TL+A++G + R L Sbjct 130 PFQPELKNEIQQLVEKELFSRFKKLIVHFQEQGQIIEMPIPSVIRFTLSAIMGLILTRFL 189 Query 186 -----NTDDNVTAAQVADFVVSLVLDGLRPRAL 213 DD V F +L GL P+ L Sbjct 190 LLPEEKWDDEVEIENTIQF----ILYGLTPQTL 218 >gi|118463482|ref|YP_883303.1| TetR family transcriptional regulator [Mycobacterium avium 104] gi|254776594|ref|ZP_05218110.1| TetR-family protein transcriptional regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|118164769|gb|ABK65666.1| TetR-family protein transcriptional regulator [Mycobacterium avium 104] gi|336459524|gb|EGO38461.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=228 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/192 (30%), Positives = 94/192 (49%), Gaps = 8/192 (4%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEE 76 + +RR ++L A VF +G+HA + +IA +AG++ ++Y +F SK +L+ A++A E Sbjct 37 RDERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHFTSKLELYLAVLARHVE 96 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEH 136 L + V L ST R L AAVQA F+F E D +L+F + Y Sbjct 97 NLVSGVQQAL-----STTKDNRRRLHAAVQAFFDFIEHDSQGYRLIFENDYVTEPEVAAQ 151 Query 137 LGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQV 196 + E ID + A++ ++ G + +RM A L + A L++D ++ A Sbjct 152 VRVATESCIDAVYALI--SEDSG-LDPHRARMIAVGLVGISVDCARYWLDSDRPISKADA 208 Query 197 ADFVVSLVLDGL 208 + V+ GL Sbjct 209 VEGTVAFAWGGL 220 >gi|229017860|ref|ZP_04174743.1| Transcriptional regulator, TetR [Bacillus cereus AH1273] gi|229024063|ref|ZP_04180537.1| Transcriptional regulator, TetR [Bacillus cereus AH1272] gi|228737241|gb|EEL87762.1| Transcriptional regulator, TetR [Bacillus cereus AH1272] gi|228743451|gb|EEL93568.1| Transcriptional regulator, TetR [Bacillus cereus AH1273] Length=217 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/210 (27%), Positives = 98/210 (47%), Gaps = 14/210 (6%) Query 11 AVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHAL 70 A + + +++R+ IL AA +F KG+ +T+ ++IAK+AG+A G I+ Y+ +K DL A+ Sbjct 12 ATNTDKRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLFAV 71 Query 71 MAGEEEALRA--HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYA 128 + A + A + LL+ + FEF + +K+L ++ Sbjct 72 VMPTLTKFAAPFFIQAFAKEIFKKDYKSYEGLLRVVIHNRFEFAKKHFPMIKILIQEV-P 130 Query 129 LGGRFEEHLGGIYE-RFIDDIEAVVVAAQRRGEVVE-APSRMAAYTLAALVGQLAHRRL- 185 + + + E + + ++V Q GE++E PS + TL+A++G L R L Sbjct 131 FQPELKSEIQQLVETELLSHFKKLIVKFQEEGEIIEMPPSSVLRLTLSAVLGFLLTRFLL 190 Query 186 ----NTDDNVTAAQVADFVVSLVLDGLRPR 211 DD V F +L GL PR Sbjct 191 LPEEKWDDEVEIENTIQF----ILYGLTPR 216 >gi|158522186|ref|YP_001530056.1| TetR family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511012|gb|ABW67979.1| transcriptional regulator, TetR family [Desulfococcus oleovorans Hxd3] Length=218 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/152 (27%), Positives = 78/152 (52%), Gaps = 9/152 (5%) Query 2 SRASARRRRAVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFD 61 +R + RR+R +K QR + IL AA+ +F KG+H T++ +IA+ A ++ G +Y+YF Sbjct 10 ARTALRRQR-----EKEQRHETILGAAETLFVKKGYHQTSLEEIAEAAEVSVGTVYFYFK 64 Query 62 SKDDLFHALMAGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKL 121 +K++L +LM + + AH+ L + + +++A +F + + Sbjct 65 NKEELLISLM----QKVGAHLRVMLQEAFLKKQGTMEGIVEAGTVFFQDFCRSHPGHASI 120 Query 122 LFRDAYALGGRFEEHLGGIYERFIDDIEAVVV 153 FR++ R E +Y + I D+E +V Sbjct 121 FFRESGGRSARVETERKRLYVKLISDLEKALV 152 >gi|332716536|ref|YP_004444002.1| transcriptional regulator, TetR family [Agrobacterium sp. H13-3] gi|325063221|gb|ADY66911.1| transcriptional regulator, TetR family [Agrobacterium sp. H13-3] Length=204 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/207 (31%), Positives = 97/207 (47%), Gaps = 27/207 (13%) Query 15 EDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALM--- 71 E K QR EIL AA F +GF AT V DIA++ G+ G +Y YF++K+ LF A++ Sbjct 10 EQKIQRPLEILDAAFEEFTKRGFTATRVEDIAERVGVTKGTVYVYFETKEALFEAMIRHA 69 Query 72 -AGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALG 130 A +EA +A+ AR LR LL+ A D ++ LFR A G Sbjct 70 SAPFQEAFKAY-----ARTSDDPVEELRMLLEFLFDAL-----VDNRKMRELFRFIVAEG 119 Query 131 GRF----EEH----LGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAH 182 +F ++H + ++ER +E V + R P+ +A ++ +VG L Sbjct 120 AKFPDLIDQHHDVVMAPVFERINTILEDGVAKKRFRAN----PTELAKVVMSPIVGTLVF 175 Query 183 RRLNTDDNVTAAQVADFV-VSLVLDGL 208 R + D QV + + L++ GL Sbjct 176 RLIFDDRRSLDKQVVLKIHLELIMRGL 202 >gi|114568864|ref|YP_755544.1| TetR family transcriptional regulator [Maricaulis maris MCS10] gi|114339326|gb|ABI64606.1| transcriptional regulator, TetR family [Maricaulis maris MCS10] Length=202 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/190 (28%), Positives = 86/190 (46%), Gaps = 9/190 (4%) Query 21 RDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALRA 80 + ++L AA+ F GFHAT++ DI ++A +A G Y YFDSKD++F AL+A E R Sbjct 22 QSKLLEAAEGAFGENGFHATSIGDITRRASVALGTFYVYFDSKDEIFRALVAHMGEMTRG 81 Query 81 HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLGGI 140 +A + E R L+ A EF +++ + ++ H Sbjct 82 WIAERVKGAPDRLETEHRGLV-----AYIEFARAHPNLYRIIEESQFVAPDAYKAH---- 132 Query 141 YERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQVADFV 200 Y+ F+D + + A RGEV A+ L + + R + + VA V Sbjct 133 YDVFMDRYQRNLEDAAARGEVAAGDQGTRAWALIGMSVFMGLRFGIWERDRDPEDVARVV 192 Query 201 VSLVLDGLRP 210 L+ +GL+P Sbjct 193 SDLIANGLKP 202 >gi|229103132|ref|ZP_04233819.1| Transcriptional regulator, TetR [Bacillus cereus Rock3-28] gi|228680321|gb|EEL34511.1| Transcriptional regulator, TetR [Bacillus cereus Rock3-28] Length=217 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/210 (27%), Positives = 99/210 (48%), Gaps = 14/210 (6%) Query 11 AVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHAL 70 A + + +++R+ IL AA +F KG+ +T+ ++IAK+AG+A G I+ Y+ +K DL A+ Sbjct 12 ATNTDKRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLLAV 71 Query 71 MAGEEEALRA--HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYA 128 + A V A + + LL+ + FEF + +K+L ++ Sbjct 72 VMPTLTKFAAPFFVQAFAKEIFKTDYESYEGLLRVVILNRFEFAKKHFPMIKILIQEV-P 130 Query 129 LGGRFEEHLGGIYE-RFIDDIEAVVVAAQRRGEVVE-APSRMAAYTLAALVGQLAHRRL- 185 + + + E + + ++V Q GE++E P + TL+A++G L R L Sbjct 131 FQPELKSEIQQLVETELLSHFKKLIVKFQEEGEIIEMPPPSVLRLTLSAVLGFLLTRFLL 190 Query 186 ----NTDDNVTAAQVADFVVSLVLDGLRPR 211 N DD + F +L GL PR Sbjct 191 LPEENWDDELEIENTIQF----ILYGLTPR 216 >gi|254821580|ref|ZP_05226581.1| TetR-family protein transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length=228 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/192 (30%), Positives = 93/192 (49%), Gaps = 8/192 (4%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEE 76 + +RR ++L A VF +G+HA + +IA +AG++ ++Y +F SK +L+ A++A E Sbjct 37 RDERRGQLLIVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHFTSKLELYLAVLARHVE 96 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEH 136 L + V L ST R L AAVQA F+F E D +L+F + Y Sbjct 97 NLVSGVQQAL-----STTKDNRRRLHAAVQAFFDFIEHDSQGYRLIFENDYVTEPEVAAQ 151 Query 137 LGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQV 196 + E ID + A++ ++ G + +RM A L + A L++D ++ A Sbjct 152 VRVATESCIDAVFALI--SEDSG-LDPHRARMIAVGLVGISVDCARYWLDSDRPISKADA 208 Query 197 ADFVVSLVLDGL 208 + V GL Sbjct 209 VEGTVQFAWGGL 220 >gi|228908263|ref|ZP_04072108.1| Transcriptional regulator, TetR [Bacillus thuringiensis IBL 200] gi|228851304|gb|EEM96113.1| Transcriptional regulator, TetR [Bacillus thuringiensis IBL 200] Length=217 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/214 (27%), Positives = 100/214 (47%), Gaps = 22/214 (10%) Query 11 AVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHAL 70 A + + +++R+ IL AA +F KG+ +T+ ++IAK+AG+A G I+ Y+ +K DL A+ Sbjct 12 ATNTDKRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLLAV 71 Query 71 MAGEEEALRAHVAAEL--ARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYA 128 + A + + S LL+ + F+F + +K+L ++ Sbjct 72 VMPTLTKFAAPFFVQTFAKEIFKSEYESYEGLLRVVIHNRFKFAQKHFPMIKILIQEV-- 129 Query 129 LGGRFEEHLGGIYERFIDD-----IEAVVVAAQRRGEVVEAP-SRMAAYTLAALVGQLAH 182 F+ L ++ I+ + ++V Q GE++E P S + TL+A++G L Sbjct 130 ---PFQPELKNEIQQLIETELFSHFKKLIVKFQEEGEIIEIPSSSVLRLTLSAVLGLLVT 186 Query 183 RRL-----NTDDNVTAAQVADFVVSLVLDGLRPR 211 R L DD + F +L GL PR Sbjct 187 RFLLLPEEKWDDEMEIENTIQF----ILYGLTPR 216 >gi|251796496|ref|YP_003011227.1| TetR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247544122|gb|ACT01141.1| transcriptional regulator, TetR family [Paenibacillus sp. JDR-2] Length=211 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/76 (44%), Positives = 49/76 (65%), Gaps = 0/76 (0%) Query 12 VSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALM 71 +S++ K QRR +IL AAK VF KG+ A T+ DI +AG++ G IY YF +K+++F ALM Sbjct 8 ISNDQKEQRRLQILEAAKQVFTDKGYGAATLKDIVVEAGMSRGWIYLYFQTKEEIFEALM 67 Query 72 AGEEEALRAHVAAELA 87 ++E + LA Sbjct 68 DHQDEEYDKQLKEALA 83 >gi|319789657|ref|YP_004151290.1| transcriptional regulator, TetR family [Thermovibrio ammonificans HB-1] gi|317114159|gb|ADU96649.1| transcriptional regulator, TetR family [Thermovibrio ammonificans HB-1] Length=188 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/141 (32%), Positives = 74/141 (53%), Gaps = 11/141 (7%) Query 19 QRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEAL 78 +R E+L AAK +F+ +GF+ TTV+DI + G+A G Y YF +KDD++ ++ E + Sbjct 3 KRERELLLAAKTLFSRRGFYDTTVSDIVESLGIARGTFYQYFKNKDDIYRRVL----EQV 58 Query 79 RAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLG 138 +++ L V S + P A L+ ++ E D+ +L+F Y L RF+ Sbjct 59 VEELSSRLKLV--SPDDPF-AQLRENLKGVLELMVEDRDLARLVFYHPYKLNPRFD---- 111 Query 139 GIYERFIDDIEAVVVAAQRRG 159 + E F + A+V A + G Sbjct 112 AVLEEFFLKVYALVEHAVKTG 132 >gi|295694802|ref|YP_003588040.1| TetR family transcriptional regulator [Bacillus tusciae DSM 2912] gi|295410404|gb|ADG04896.1| transcriptional regulator, TetR family [Bacillus tusciae DSM 2912] Length=192 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/193 (27%), Positives = 93/193 (49%), Gaps = 10/193 (5%) Query 19 QRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEAL 78 + +EI AAA +F KG+HAT+V DIA GL G +Y Y SK++L L+ +A+ Sbjct 4 NKYEEIAAAAIQLFEQKGYHATSVQDIADAVGLQKGSLYHYIASKEEL---LLKITHQAI 60 Query 79 RAHV--AAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEH 136 V E+ T P+ + ++ ++ + +L R+A++LG E Sbjct 61 NGFVRRLEEII----DTNLPVEERFRQGIRTHMQYITQYLSMSTVLLREAFSLGEPHNEV 116 Query 137 LGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQV 196 + + +R+++ ++ G SR+AA T+ + +R + TA ++ Sbjct 117 IRDLTDRYLNLWTQIINEGVAAGVFSVKDSRIAALTILGSCNWV-YRWFKEEGKYTAEEI 175 Query 197 ADFVVSLVLDGLR 209 AD + +L LDGL+ Sbjct 176 ADQMANLFLDGLK 188 >gi|27379144|ref|NP_770673.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27352294|dbj|BAC49298.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length=210 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/95 (42%), Positives = 55/95 (58%), Gaps = 2/95 (2%) Query 12 VSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALM 71 +SD+ + RR +IL AA FA GFH T +ADI K++GL++G +Y YF SKDDL AL Sbjct 4 ISDKQREGRRRQILEAALACFAENGFHQTGMADIVKRSGLSHGAVYLYFRSKDDLIEAL- 62 Query 72 AGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQ 106 ++ R V +A+ G L AL++ Q Sbjct 63 -ADDRHRREAVLNSVAQGSGDPIEGLHALVRVYAQ 96 >gi|331694385|ref|YP_004330624.1| regulatory protein TetR [Pseudonocardia dioxanivorans CB1190] gi|326949074|gb|AEA22771.1| regulatory protein TetR [Pseudonocardia dioxanivorans CB1190] Length=218 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/184 (34%), Positives = 90/184 (49%), Gaps = 8/184 (4%) Query 9 RRAVSDEDKSQR-RDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLF 67 RRAV + +R R +L AA+IVFA GF A + DIA QAG A+G Y YF SKD++F Sbjct 18 RRAVPATARGRRSRQALLDAARIVFARDGFTAARITDIADQAGAAHGSFYTYFKSKDEIF 77 Query 68 HALMAGEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAY 127 AL+ EE LR E A S +A R +L+A + ++ D + +++ A Sbjct 78 LALIEELEEDLRVSGRGESA---ASDDAYAR-ILRANTEYLTAYY--DNRGIMVVWEQAA 131 Query 128 ALGGRFEEHLGGIYERFIDDIEAVVVAAQRRGEVVEA-PSRMAAYTLAALVGQLAHRRLN 186 L E +R + + + Q GEV A +R AA L ++ A+R Sbjct 132 TLNPEVAELRSQASDRAVARVVRAIERMQAAGEVSPAIDARYAATALTGMISNFAYRWCL 191 Query 187 TDDN 190 D++ Sbjct 192 RDED 195 >gi|258651660|ref|YP_003200816.1| TetR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554885|gb|ACV77827.1| transcriptional regulator, TetR family [Nakamurella multipartita DSM 44233] Length=204 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/76 (47%), Positives = 51/76 (68%), Gaps = 4/76 (5%) Query 12 VSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHA-- 69 V+D ++ RRD+IL AA + FA KGFHAT++AD+ +AGL+ G +Y YF SK+++ A Sbjct 4 VTDAHRAARRDQILQAAWVCFARKGFHATSMADVIGEAGLSAGAVYLYFRSKEEIIVAVA 63 Query 70 --LMAGEEEALRAHVA 83 + G E L A+VA Sbjct 64 GEVFGGIEHRLSAYVA 79 >gi|311744705|ref|ZP_07718502.1| TetR family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312014|gb|EFQ81934.1| TetR family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length=203 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/176 (32%), Positives = 91/176 (52%), Gaps = 9/176 (5%) Query 9 RRAVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFH 68 R+A E ++IL A + V G+ A + +AKQAG++ G +Y YF KD + Sbjct 9 RKAPQQERSRLMVEKILTAGREVLLRDGYDAASTNKVAKQAGISPGSLYQYFADKDAVVD 68 Query 69 ALMAGEEEALRAHVAAELA-RVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAY 127 A++A + L VAA L ++GG P +L+ A + A + E ++A ++ +F D Sbjct 69 AVVAKYADELSDRVAASLTDQLGG----PDDSLIHATLHALLDALEENEAFLR-VFVDEL 123 Query 128 ALGGRFEEHLGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHR 183 R E L G+ +R + D+ A +AA RRG+V + P AA+ + + QL R Sbjct 124 P-RTRNHERLAGVEQR-VSDLMAAYLAA-RRGDVRDVPPSRAAWIVVRAIEQLTVR 176 >gi|317130525|ref|YP_004096807.1| TetR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475473|gb|ADU32076.1| transcriptional regulator, TetR family [Bacillus cellulosilyticus DSM 2522] Length=192 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/193 (30%), Positives = 92/193 (48%), Gaps = 7/193 (3%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEE 76 +S ++ IL AA FAH G+ ATTV +AK A + G IY YF +K++LF ++ Sbjct 2 ESNKKARILEAATKSFAHFGYKATTVDQVAKIAKVGKGTIYTYFANKEELFKEIIDDLAR 61 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGR-FEE 135 +R VA+EL G S + A L V EF E + T+KL ++ +G E Sbjct 62 QMRV-VASELIIPGNSFISNFTAALHGVV----EFREKHELTIKLS-QEVKEMGTPVVAE 115 Query 136 HLGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAAQ 195 L I IE+ ++ A RGE+ ++ A+ + + L + + + + Sbjct 116 ALQSIENEICAFIESRIIKAVERGELRNCNPKITAFLMFKMYINLVSDWKDRYEPLPKEE 175 Query 196 VADFVVSLVLDGL 208 VA+ + +DGL Sbjct 176 VANLIKLYFIDGL 188 >gi|229116034|ref|ZP_04245428.1| Transcriptional regulator, TetR [Bacillus cereus Rock1-3] gi|228667429|gb|EEL22877.1| Transcriptional regulator, TetR [Bacillus cereus Rock1-3] Length=217 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/210 (27%), Positives = 99/210 (48%), Gaps = 14/210 (6%) Query 11 AVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHAL 70 A + +++++R+ IL AA +F KG+ +T+ ++IAK+AG+A G I+ Y+ +K DL A+ Sbjct 12 ATNTDNRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLLAV 71 Query 71 MAGEEEALRA--HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYA 128 + A V A + + LL+ + FEF + +K+L ++ Sbjct 72 VMPTLTKFAAPFFVQAFAKEIFKTDYESYEGLLRVVIHNRFEFAKKHFPMIKILIQEV-P 130 Query 129 LGGRFEEHLGGIYE-RFIDDIEAVVVAAQRRGEVVE-APSRMAAYTLAALVGQLAHRRL- 185 + + + E + + ++V Q G ++E P + TL+A++G L R L Sbjct 131 FQPELKSEIQQLVETELLSHFKKLIVKFQEEGGIIEMPPPSVLRLTLSAVLGFLLTRFLL 190 Query 186 ----NTDDNVTAAQVADFVVSLVLDGLRPR 211 N DD + F +L GL PR Sbjct 191 LPEENWDDELEIENTIQF----ILYGLTPR 216 >gi|67077957|ref|YP_245577.1| TetR/AcrR family transcriptional regulator [Bacillus cereus E33L] gi|66970263|gb|AAY60239.1| probable transcriptional regulator, TetR/AcrR family [Bacillus cereus E33L] Length=196 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/128 (32%), Positives = 71/128 (56%), Gaps = 5/128 (3%) Query 19 QRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEAL 78 + ++ ++ AA +VF+ KG+ A+T DIAK+AG+ GLIY YF SK+DL A++ ++ L Sbjct 13 ETKNNLIDAALVVFSKKGYAASTTKDIAKEAGVTDGLIYHYFKSKEDLLWAII--DKHTL 70 Query 79 RAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLG 138 + +A VG ++ PL +L + + F+ + + F +A +EHL Sbjct 71 NHELNKMIADVG--SDEPLEVILFRIIDSLFDLLHAKAELIVMFFGEAQR-NSAVQEHLS 127 Query 139 GIYERFID 146 + ++ ID Sbjct 128 QLIQQGID 135 >gi|332703361|ref|ZP_08423449.1| transcriptional regulator, TetR family [Desulfovibrio africanus str. Walvis Bay] gi|332553510|gb|EGJ50554.1| transcriptional regulator, TetR family [Desulfovibrio africanus str. Walvis Bay] Length=190 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/160 (29%), Positives = 81/160 (51%), Gaps = 10/160 (6%) Query 24 ILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALRAHVA 83 IL AA+ +FA KGF T +ADIAK+AG+A G I ++F SK++L L+ +L H Sbjct 7 ILNAARDLFAEKGFEQTPIADIAKKAGVAGGTIIYHFKSKENLLFILIRQILYSLYRHAQ 66 Query 84 AELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEHLGG---- 139 E++ A +++ ++A F F ++ + K+L + +EH Sbjct 67 DEISTATNGLNA-----VESYIRAFFSFLDSRGSDFKVLLKTNPFEVINLQEHPNADVKL 121 Query 140 IYERFIDDIEAVVVAAQRRGEVVEA-PSRMAAYTLAALVG 178 I++R++D + + Q G + + P+ + + AAL G Sbjct 122 IFDRYLDLLVDAIKRGQADGSIRDGQPAELGKFIFAALFG 161 >gi|115379793|ref|ZP_01466864.1| TetR family transcriptional regulator, putative [Stigmatella aurantiaca DW4/3-1] gi|310820722|ref|YP_003953080.1| tetr family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115363211|gb|EAU62375.1| TetR family transcriptional regulator, putative [Stigmatella aurantiaca DW4/3-1] gi|309393794|gb|ADO71253.1| TetR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length=230 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/111 (37%), Positives = 59/111 (54%), Gaps = 13/111 (11%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDL----FHALMA 72 + +RR IL AA VFA KG+H +AD+A++AG+AYGL+Y YF +KD+L F + Sbjct 15 EGERRRTILRAAIDVFARKGYHGCRIADVAREAGVAYGLVYHYFKNKDELLETVFETGWS 74 Query 73 GEEEALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLF 123 G +RA V A E P+ ++ F+ + D VK+L Sbjct 75 GFVSRIRAVVEA---------EGPVGPKVRGITDVAFDAYRVDPRAVKVLI 116 >gi|229097072|ref|ZP_04228039.1| Transcriptional regulator, TetR [Bacillus cereus Rock3-29] gi|228686358|gb|EEL40269.1| Transcriptional regulator, TetR [Bacillus cereus Rock3-29] Length=217 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/210 (27%), Positives = 99/210 (48%), Gaps = 14/210 (6%) Query 11 AVSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHAL 70 A + +++++R+ IL AA +F KG+ +T+ ++IAK+AG+A G I+ Y+ +K DL A+ Sbjct 12 ATNTDNRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLLAV 71 Query 71 MAGEEEALRA--HVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYA 128 + A V A + + LL+ + FEF + +K+L ++ Sbjct 72 VMPTLTKFAAPFFVQAFAKEIFKTDYESYEGLLRVVIHNRFEFAKRHFPMIKILIQEV-P 130 Query 129 LGGRFEEHLGGIYE-RFIDDIEAVVVAAQRRGEVVE-APSRMAAYTLAALVGQLAHRRL- 185 + + + E + + ++V Q G ++E P + TL+A++G L R L Sbjct 131 FQPELKSEIQQLVETELLSHFKKLIVKFQEEGGIIEMPPPSVLRLTLSAVLGFLLTRFLL 190 Query 186 ----NTDDNVTAAQVADFVVSLVLDGLRPR 211 N DD + F +L GL PR Sbjct 191 LPEENWDDELEIENTIQF----ILYGLTPR 216 >gi|343928262|ref|ZP_08767716.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343761856|dbj|GAA14642.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=210 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 63/197 (32%), Positives = 92/197 (47%), Gaps = 8/197 (4%) Query 17 KSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEE 76 +S RRDE+LA A +FA G +TTV DIA AG+ G +Y +FDSK+ + ++ + Sbjct 20 RSSRRDELLATAGRMFAENGLRSTTVRDIADAAGILSGSLYHHFDSKESMVDEILRRFLD 79 Query 77 ALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGG--RFE 134 L A E+A G S LR L V A+FE + ++ V + +A L G RF Sbjct 80 DLFARY-REIAGAGLSASETLRGL----VVASFESIDAERNAVAIYQDEAKRLSGQERF- 133 Query 135 EHLGGIYERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAALVGQLAHRRLNTDDNVTAA 194 ++G + F AV+ GE Y +A R +T Sbjct 134 GYIGELNVEFRQLWHAVLQRGVDDGEFRPDLDVELVYRFMRDTVWVAVRWYRPGGPMTVE 193 Query 195 QVADFVVSLVLDGLRPR 211 +AD +S+VLDG+ PR Sbjct 194 SIADQYLSIVLDGILPR 210 >gi|317121320|ref|YP_004101323.1| regulatory protein TetR [Thermaerobacter marianensis DSM 12885] gi|315591300|gb|ADU50596.1| regulatory protein TetR [Thermaerobacter marianensis DSM 12885] Length=200 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 72/209 (35%), Positives = 102/209 (49%), Gaps = 21/209 (10%) Query 20 RRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEEEALR 79 R EIL AA+ +F KG++ATT+ DIA+ GL +Y Y SK+ L +AGE L Sbjct 4 REQEILDAARKLFRQKGYYATTMQDIAEAVGLQKASLYHYIRSKEALL-LQVAGETMRL- 61 Query 80 AHVAAELARV---GGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALGGRFEEH 136 AEL R+ GGS L A ++A V+ E E T+ +LFR+++AL E Sbjct 62 --FHAELDRIEAAGGSYAEQLAAAIRAHVRVVAEHQE----TLTVLFRESHALPPEHAEK 115 Query 137 LGGI---YERFIDDIEAVVVAAQRRGEVVEAPSRMAAYTLAAL-VGQLAHRRLNTDDNVT 192 + G Y R + D+ A VAA GE P A LA L +R + + ++ Sbjct 116 VRGETRRYTRRLTDLIARGVAA---GEF--RPVDPGAACLAILGACNWMYRWYSAEGRLS 170 Query 193 AAQVADFVVSLVLDGL-RPRALAVGARGG 220 ++AD V ++L GL PR G G Sbjct 171 PQEIADQFVQVILHGLVLPRGGPAGTPAG 199 >gi|54025698|ref|YP_119940.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017206|dbj|BAD58576.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=202 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/115 (39%), Positives = 64/115 (56%), Gaps = 6/115 (5%) Query 16 DKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALMAGEE 75 D + RR EIL AA VFA KGF A+ V D+A AG+A G +Y FDS++DL A+ E+ Sbjct 7 DTTARRAEILDAAVRVFARKGFAASRVEDVAAAAGIAKGSVYLAFDSREDLLRAIF--ED 64 Query 76 EALRAHVAAELARVGGSTEAPLRALLQAAVQATFEFFETDKATVKLLFRDAYALG 130 A R AR + E P L +++TF ++ T ++LF D +++G Sbjct 65 FAERTAAGMRRAR---TAEGPALDRLAELIRSTFVLLTQERETARILF-DLWSVG 115 >gi|54023422|ref|YP_117664.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54014930|dbj|BAD56300.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=205 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/73 (46%), Positives = 48/73 (66%), Gaps = 0/73 (0%) Query 12 VSDEDKSQRRDEILAAAKIVFAHKGFHATTVADIAKQAGLAYGLIYWYFDSKDDLFHALM 71 VS+E +RR +IL AA++ FA KGFH T++ D+ ++GL+ G +Y YF SK+DL AL Sbjct 4 VSEEHLERRRQQILDAAQLCFARKGFHETSMQDVFAESGLSAGAVYRYFKSKNDLVAALA 63 Query 72 AGEEEALRAHVAA 84 LR+ +AA Sbjct 64 GQTSVQLRSVIAA 76 Lambda K H 0.322 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 289298170616 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40